HHsearch alignment for GI: 254780694 and conserved domain: pfam08279
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.11 E-value=0.014 Score=35.40 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=32.7
Q ss_pred HHHHHHHHHH--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 7999999998--59-997999999499988999999999998079
Q gi|254780694|r 189 REVECLTWIS--EG-KTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 189 RE~eVl~lia--~G-~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 1 R~~~il~~L~~~~~~vt~~~La~~l~VSr~TV~rdi~~L~-~~G~ 44 (55)
T pfam08279 1 RLLQILELLLQAREPISGQELAEKLGVSRRTIRRDIKALE-ALGV 44 (55)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCC
T ss_conf 9899999999769991899999996988999999999999-8899