HHsearch alignment for GI: 254780694 and conserved domain: pfam08281

>pfam08281 Sigma70_r4_2 Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.

Probab=98.12  E-value=6.2e-06  Score=56.94  Aligned_cols=45  Identities=36%  Similarity=0.395  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88897799999999-8599979999994999889999999999980
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT  228 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  228 (246)
T Consensus         9 ~~Lp~~~r~~~~l~~~~~~s~~eIA~~lg~s~~tVk~~l~RA~~~L   54 (54)
T pfam08281         9 EELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL   54 (54)
T ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             8599999989687998785999999998949999999999999719