HHsearch results for GI: 254780694 and protein with PDBid: 1a04_A
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.85 E-value=1.1e-20 Score=150.34 Aligned_cols=210 Identities=14% Similarity=0.075 Sum_probs=131.6
Q ss_pred HHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHH
Q ss_conf 11000221445888876553023213799997327999999999999987193023000266631112321000689589
Q gi|254780694|r 6 QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 (246)
Q Consensus 6 ~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (246)
+..+|++..+++.-...+.++....+....+..+.+..+....+.. ..++... .+..+.+..+.+
T Consensus 4 ep~rILIvdD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~~l~~~~~----~~pdlvl-----------lD~~lp~~~G~~ 68 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES----LDPDLIL-----------LDLNMPGMNGLE 68 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----HCCSEEE-----------EETTSTTSCHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH----CCCCEEE-----------EECCCCCCCCCC
T ss_conf 8878999929899999999999858992899997999999999974----6996899-----------968889989862
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999966984517389999852324430325433332144571475033736899999997178754698999999999
Q gi|254780694|r 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
+............- ..................++.+|+.++.........+.....+....+......+..
T Consensus 69 ~~~~~~~~~~~~~i--------ivlt~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~- 139 (215)
T 1a04_A 69 TLDKLREKSLSGRI--------VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAA- 139 (215)
T ss_dssp HHHHHHHSCCCSEE--------EEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHH-
T ss_pred CCCCCCCCCCCCCC--------CCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH-
T ss_conf 32101124566554--------344367999999999984998986025999999999999984887568567678888-
Q ss_pred HHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 999997542-0146779888889779999999985999799999949998899999999999807998899999999758
Q gi|254780694|r 166 AAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
... ...........||+||.||++++++|+||++||+.|+||++||++|+++||+|||++||+|++.||.++|
T Consensus 140 ------~~~~~~~~~~~~~~~LT~rE~~vl~ll~~g~sn~~IA~~L~iS~~TV~~h~~~i~~KL~v~~r~e~~~~a~~~~ 213 (215)
T 1a04_A 140 ------SLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 213 (215)
T ss_dssp ------HC-------CCCGGGSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred ------HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf ------87624454578702089899999999998663126799978868799999999999809998899999999848
Q ss_pred C
Q ss_conf 9
Q gi|254780694|r 245 I 245 (246)
Q Consensus 245 l 245 (246)
|
T Consensus 214 l 214 (215)
T 1a04_A 214 I 214 (215)
T ss_dssp C
T ss_pred C
T ss_conf 9