HHsearch results for GI: 254780694 and protein with PDBid: 1kgs_A
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=97.08 E-value=0.00055 Score=43.07 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 33332144571475033736899999997178754698999999999999997542014677988888977999999998
Q gi|254780694|r 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 (246)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia 198 (246)
.......++.+|+.++++.......+................ ............-...+....||++|.++|.+++
T Consensus 89 ~~~~l~~Gaddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~L~ 164 (225)
T 1kgs_A 89 RVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLV----CGDLILDTATKKAYRGSKEIDLTKKEYQILEYLV 164 (225)
T ss_dssp HHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEE----ETTEEEETTTTEEEETTEEECCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCHHHCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 999997799852458999999999999997113346775330----4764456655031128978626579999999987
Q ss_pred CC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 59----9979999994-----99988999999999998079988
Q gi|254780694|r 199 EG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATKTR 233 (246)
Q Consensus 199 ~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~~R 233 (246)
+. .|..+|...+ .++.+||+.|++++++||+..+.
T Consensus 165 ~~~~~vvsr~~L~~~vwg~~~~~~~~tl~~~I~rLR~KL~~~~~ 208 (225)
T 1kgs_A 165 MNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFK 208 (225)
T ss_dssp HTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCS
T ss_pred HCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 52434442999999871777787657699999999998457799