HHsearch results for GI: 254780694 and protein with PDBid: 1l3l_A

>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=99.97  E-value=1.7e-30  Score=213.31  Aligned_cols=211  Identities=13%  Similarity=0.102  Sum_probs=152.7

Q ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             3799997327-999999999999987193023000266631112321000689589999999669845173899998523
Q gi|254780694|r   31 DLLARMIPLD-CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF  109 (246)
Q Consensus        31 d~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  109 (246)
                      |.+..+.... +...+...+..+++.+||+.|.+.....     .+....++++.+|...|...++...||++..+....
T Consensus         6 ~~l~~~~~~~~~~~~l~~~l~~~~~~~Gf~~~~~~~~~~-----~~~~~~~~~p~~w~~~Y~~~~~~~~DP~~~~~~~~~   80 (234)
T 1l3l_A            6 DKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQH-----RHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRK   80 (234)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEEEEEEET-----TEEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCEEEECCCCHHHHHHHHHCCCHHCCHHHHHHHCCC
T ss_conf             999998853286999999999999977998799983278-----765787189989999999779612098999997489


Q ss_pred             HHHHCCCHH-------------HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHHHH
Q ss_conf             244303254-------------3333214457147503373689999999717875469----89999999999999975
Q gi|254780694|r  110 CPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANM  172 (246)
Q Consensus       110 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  172 (246)
                      .|+.|....             ......+...|+..+.....+..+.+...........    ............+....
T Consensus        81 ~p~~w~~~~~~~~~~~~~~~~~~~a~~~g~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (234)
T 1l3l_A           81 HIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARIS  160 (234)
T ss_dssp             SCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGGGCEEEEEEEESSSSCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98795050200336878999999999839751588885068885699974367650356899999999999999999998


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf             42014677988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r  173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV  246 (246)
Q Consensus       173 ~~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli  246 (246)
                      .............||+||+|||+|+++|+||+|||.+|+||++||++|++|||+|||++||+|||++|+++|||
T Consensus       161 ~~~~~~~~~~~~~LT~RE~evL~~~a~G~s~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nr~qav~~A~~~glI  234 (234)
T 1l3l_A          161 FLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI  234 (234)
T ss_dssp             HTTCCCSEECCCCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             62168988777789989999999997699999999996989999999999999986899999999999986999