HHsearch results for GI: 254780694 and protein with PDBid: 1l3l_A
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=99.97 E-value=1.7e-30 Score=213.31 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=152.7
Q ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 3799997327-999999999999987193023000266631112321000689589999999669845173899998523
Q gi|254780694|r 31 DLLARMIPLD-CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109 (246)
Q Consensus 31 d~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 109 (246)
|.+..+.... +...+...+..+++.+||+.|.+..... .+....++++.+|...|...++...||++..+....
T Consensus 6 ~~l~~~~~~~~~~~~l~~~l~~~~~~~Gf~~~~~~~~~~-----~~~~~~~~~p~~w~~~Y~~~~~~~~DP~~~~~~~~~ 80 (234)
T 1l3l_A 6 DKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQH-----RHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRK 80 (234)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEEEEEEET-----TEEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCEEEECCCCHHHHHHHHHCCCHHCCHHHHHHHCCC
T ss_conf 999998853286999999999999977998799983278-----765787189989999999779612098999997489
Q ss_pred HHHHCCCHH-------------HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHHHH
Q ss_conf 244303254-------------3333214457147503373689999999717875469----89999999999999975
Q gi|254780694|r 110 CPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANM 172 (246)
Q Consensus 110 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 172 (246)
.|+.|.... ......+...|+..+.....+..+.+........... ............+....
T Consensus 81 ~p~~w~~~~~~~~~~~~~~~~~~~a~~~g~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
T 1l3l_A 81 HIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARIS 160 (234)
T ss_dssp SCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGGGCEEEEEEEESSSSCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98795050200336878999999999839751588885068885699974367650356899999999999999999998
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 42014677988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 173 ~~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
.............||+||+|||+|+++|+||+|||.+|+||++||++|++|||+|||++||+|||++|+++|||
T Consensus 161 ~~~~~~~~~~~~~LT~RE~evL~~~a~G~s~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nr~qav~~A~~~glI 234 (234)
T 1l3l_A 161 FLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 (234)
T ss_dssp HTTCCCSEECCCCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 62168988777789989999999997699999999996989999999999999986899999999999986999