HHsearch results for GI: 254780694 and protein with PDBid: 1l9z_H

>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1

Probab=96.80  E-value=0.002  Score=39.50  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCHHHHH
Q ss_conf             8897799999999-----859997999999499988999999999998079-9889999
Q gi|254780694|r  185 ELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT-KTRSGAI  237 (246)
Q Consensus       185 ~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv-~~R~eav  237 (246)
                      .|++||++|+.+-     .+.+|-+|||..|+||...|+...+++++||-- .+|.+-.
T Consensus       375 ~L~~REr~II~~RfGl~~~~~~Tl~EIg~~lgvSreRVrQIe~kAL~KLR~~~~r~~~l  433 (438)
T 1l9z_H          375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKL  433 (438)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             59999999999707778998503999999989799999999999999988677868999