HHsearch results for GI: 254780694 and protein with PDBid: 1u78_A

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=96.83  E-value=0.0026  Score=38.71  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=27.6

Q ss_pred             CCCCHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             88897799-99999985999799999949998899999999
Q gi|254780694|r  184 FELTGREV-ECLTWISEGKTSDEIAVILGISRNTVNNYIAS  223 (246)
Q Consensus       184 ~~LT~RE~-eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~  223 (246)
                      -.||+-|+ +|..+..+|+|..+||..|++|..||..+++.
T Consensus         5 ~~lt~~~R~~I~~l~~~G~s~~~IAk~lg~s~stV~r~lk~   45 (141)
T 1u78_A            5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKD   45 (141)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             87999999999999997999999999989578999999997