HHsearch results for GI: 254780694 and protein with PDBid: 1u78_A
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=96.83 E-value=0.0026 Score=38.71 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=27.6
Q ss_pred CCCCHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88897799-99999985999799999949998899999999
Q gi|254780694|r 184 FELTGREV-ECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 184 ~~LT~RE~-eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
-.||+-|+ +|..+..+|+|..+||..|++|..||..+++.
T Consensus 5 ~~lt~~~R~~I~~l~~~G~s~~~IAk~lg~s~stV~r~lk~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 87999999999999997999999999989578999999997