BLAST/PSIBLAST alignment of GI: 254780694 and GI: 116250468 at iteration 1
>gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 262
>gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 262
 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 156/229 (68%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R +LL R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 34  SAVVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 93

Query: 80  SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A      Y     L++  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 94  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 153

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 154 GRSRLSLMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262