BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] (246 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH Sbjct: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI Sbjct: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW Sbjct: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA Sbjct: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 Query: 241 VRNNIV 246 VRNNIV Sbjct: 241 VRNNIV 246 >gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 246 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/246 (91%), Positives = 234/246 (95%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MNFE+QQVNIVLNREDEQRTS VSHLPTRSDLLARMIPLD TVS MRMYALTEYVGASH Sbjct: 1 MNFEMQQVNIVLNREDEQRTSIVSHLPTRSDLLARMIPLDRTVSSKMRMYALTEYVGASH 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120 FLLVRWDLFQEQKLDS+VSSDWPFDLVRCM LSEKDKYYNVLQRP ELFCPVFH LPENI Sbjct: 61 FLLVRWDLFQEQKLDSVVSSDWPFDLVRCMTLSEKDKYYNVLQRPAELFCPVFHILPENI 120 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P+GMDNRYC+LTFDV RIRIGLMLLFPKGRI+ +DRLWEIGLLAAYQANMFK+Y+VH Sbjct: 121 DLPSGMDNRYCALTFDVGRIRIGLMLLFPKGRIVSQDRLWEIGLLAAYQANMFKNYNVHL 180 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKDFELTGRE+ECLTWISEGKTSDEIAVILGISRNT+NNYIASIMRKTATKTRSGAIAYA Sbjct: 181 GKDFELTGREIECLTWISEGKTSDEIAVILGISRNTINNYIASIMRKTATKTRSGAIAYA 240 Query: 241 VRNNIV 246 VRNNIV Sbjct: 241 VRNNIV 246 >gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 161/240 (67%), Gaps = 6/240 (2%) Query: 13 NREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68 ++ ++Q +F S L R +L+ R+ + T + ALTEYVGASH+LL R DL Sbjct: 9 SKGEKQMMNFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYVGASHYLLARCDL 68 Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGM 126 QE LD +VSSDWPFDLV+ +A Y L++ ++F P F LPE+ P G Sbjct: 69 IQESGLDFVVSSDWPFDLVKDIANDLVSGYARSTELEKCMQVFQPNFALLPESAAVPEGA 128 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 +YCSLTF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFEL Sbjct: 129 SRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDRDFEL 188 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 189 TDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/248 (48%), Positives = 163/248 (65%), Gaps = 5/248 (2%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ +I Q + + + R + S +R L+ ++ + + LT+YVGASH Sbjct: 1 MDMQISQAS---KGDKDARAAAPSSAMSRDQLILQLTAVAGPAYLQSGLRVLTDYVGASH 57 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPE 118 +LL R DL QE LD +VSSDWPFDLVR +A + Y L++ LF PVF LP+ Sbjct: 58 YLLARCDLIQESGLDFVVSSDWPFDLVRRLASELTNGYGRAGELEKSMSLFQPVFAFLPD 117 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 ++ PP G+ YC+LTF+V R R LMLL ++ +RL ++GLLA Y A+ +S + Sbjct: 118 DVEPPEGVSRHYCALTFNVGRTRFSLMLLARDSLLLSPERLRDVGLLAGYFASFTRSVEG 177 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +DF+LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA Sbjct: 178 KLERDFDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 237 Query: 239 YAVRNNIV 246 +AVRNN+V Sbjct: 238 FAVRNNLV 245 >gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 122/229 (53%), Positives = 156/229 (68%), Gaps = 2/229 (0%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 ++ V L R +LL R+ + T + ALT+YVGASH+LL R DL QE LD IVS Sbjct: 34 SAVVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 93 Query: 80 SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 SDWPFDLVR +A Y L++ ++F P F LP++ P G +YCS+TF+V Sbjct: 94 SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 153 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFELT RE+ECL WI Sbjct: 154 GRSRLSLMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262 >gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 122/229 (53%), Positives = 155/229 (67%), Gaps = 2/229 (0%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 ++ V L R LL R+ + + + ALT+YVGASH+LL R DL QE LD IVS Sbjct: 20 SAVVPDLLPRDKLLQRLHGVTSSGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 79 Query: 80 SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 SDWPFDLVR +A Y L+R ++F P F LP++ P G +YCS+TF+V Sbjct: 80 SDWPFDLVRDIANDLVRGYARSTELERCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 139 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFELT RE+ECL WI Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWI 199 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae] Length = 262 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 122/229 (53%), Positives = 156/229 (68%), Gaps = 2/229 (0%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 ++ V L R +LL R+ + T + ALT+YVGASH+LL R DL QE LD IVS Sbjct: 34 SAVVPDLLPRDELLLRLHGVASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 93 Query: 80 SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 SDWPFDLVR +A Y L++ ++F P F LP++ P G +YCS+TF+V Sbjct: 94 SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 153 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFELT RE+ECL WI Sbjct: 154 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262 >gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 122/229 (53%), Positives = 155/229 (67%), Gaps = 2/229 (0%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 ++ V L R LL R+ + T + ALTEYVGASH+LL R DL QE LD IVS Sbjct: 20 SAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVS 79 Query: 80 SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 SDWPFDLVR +A Y L++ ++F P F +P++ P G +YCS+TF+V Sbjct: 80 SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDSADVPDGASRQYCSVTFNV 139 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFELT RE+ECL WI Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWI 199 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 123/223 (55%), Positives = 153/223 (68%), Gaps = 3/223 (1%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 LP R +L+ R+ + T + ALT+YVGASH+LL R DL QE LD IVSSDWPFD Sbjct: 13 LP-RDELVRRLHGVADTGRLQSGLRALTDYVGASHYLLARCDLIQESGLDFIVSSDWPFD 71 Query: 86 LVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 LVR +A Y L++ ++F P F LPE P G +YCSLTF+V R R+ Sbjct: 72 LVRDIANDLVSTYARSTELEKCMQVFQPNFALLPEGADVPEGASRQYCSLTFNVGRSRLA 131 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 LM LF +G I+ +RL ++GLLA Y A+ + +DFELT RE+ECL WI+EGKTS Sbjct: 132 LMFLFGEGFILSPERLRDVGLLAGYIASFLRCGGAKVDRDFELTDRELECLFWIAEGKTS 191 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 DEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 192 DEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234 >gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/229 (52%), Positives = 156/229 (68%), Gaps = 2/229 (0%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 ++ V L R +LL R+ + T + ALT+YVGAS++LL R DL QE LD IVS Sbjct: 20 SAAVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASYYLLARCDLLQESGLDFIVS 79 Query: 80 SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 SDWPFDLVR +A Y L++ ++F P F LP++ P G +YCS+TF+V Sbjct: 80 SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 139 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFELT RE+ECL WI Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 199 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family [Sinorhizobium meliloti 1021] Length = 245 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 149/221 (67%), Gaps = 2/221 (0%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 +R L+ R+ + + ALTEYVGA+H+LL R D+ Q+ LD +V SDWPFD+V Sbjct: 25 SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIV 84 Query: 88 RCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 R ++ ++ L+R P FHT+P++I P G+ YC++TF V R R LM Sbjct: 85 RRLSGIIAGLHAKITELERCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLM 144 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 LLFP+ I+ ++ L +I +LA Y A+ DV ++ ELT RE+ECL WI+EGKTSDE Sbjct: 145 LLFPEDVILSQEALRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDE 204 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V Sbjct: 205 IAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245 >gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti] Length = 245 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/221 (49%), Positives = 149/221 (67%), Gaps = 2/221 (0%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 +R L+ R+ + + ALTEYVGA+H+LL R D+ Q+ LD +V SDWPFD+V Sbjct: 25 SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIV 84 Query: 88 RCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 R ++ ++ L++ P FHT+P++I P G+ YC++TF V R R LM Sbjct: 85 RRLSGIIAGLHAKITELEKCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLM 144 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 LLFP+ I+ ++ L +I +LA Y A+ DV ++ ELT RE+ECL WI+EGKTSDE Sbjct: 145 LLFPEDVILSQESLRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDE 204 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V Sbjct: 205 IAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245 >gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 210 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/200 (54%), Positives = 142/200 (71%), Gaps = 2/200 (1%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPT 106 + ALTEYVGA+H+LL R D+ Q+ LD +V SDWPFD+VR ++ ++ L+R Sbjct: 11 LAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELERCL 70 Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 P FHT+P++I P G+ YC++TF V R R LMLLFP+ I+ ++ L +I +LA Sbjct: 71 AQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQEALRDIAVLA 130 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 Y A+ DV ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MR Sbjct: 131 GYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMR 190 Query: 227 KTATKTRSGAIAYAVRNNIV 246 KTAT+TRS AIA+AVRNN+V Sbjct: 191 KTATRTRSEAIAHAVRNNLV 210 >gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 245 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 148/221 (66%), Gaps = 2/221 (0%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 +R L+ R+ L + LTEYVGA+H+LL R D+ Q+ LD +V SDWPFD+V Sbjct: 25 SREQLIRRLGELASGTGLGNGLAVLTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIV 84 Query: 88 RCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 R ++ ++ + L++ PVFH +P++I P G+ YC++TF + R LM Sbjct: 85 RRLSGIIAGLNSKTTELEKCRAQLQPVFHAMPDDIGLPRGVSRSYCAVTFSIGPTRFSLM 144 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 LLFP+ I+ +D L ++ +LA Y A+ DV ++ ELT RE+ECL WI+EGKTSDE Sbjct: 145 LLFPEDVILSQDALRDVAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDE 204 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V Sbjct: 205 IAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245 >gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 245 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 113/228 (49%), Positives = 149/228 (65%), Gaps = 16/228 (7%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 +R L+ R+ S + LTEYVGA+H LL R DL Q+ LD ++ SDWPFD+V Sbjct: 25 SREQLIRRLGEAAERSSLANGLAILTEYVGATHHLLARHDLSQDGGLDFVLCSDWPFDVV 84 Query: 88 RCMA---------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 R +A +E +K LQ P F LP++I P G++ YCS+TF+V Sbjct: 85 RRLASIVIGLNAKTTELEKCLAALQ-------PCFQVLPDDIDLPRGVNRSYCSVTFNVG 137 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 R R LMLLFP+ I+ ++ L +I +LA+Y A+ V +DFELT RE+ECL WI+ Sbjct: 138 RSRFSLMLLFPEDVILSQEGLRDIAVLASYLASFKAGAGVRHDRDFELTEREIECLFWIA 197 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGKTS+EIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVR+N+V Sbjct: 198 EGKTSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245 >gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 248 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 117/233 (50%), Positives = 152/233 (65%), Gaps = 5/233 (2%) Query: 18 QRTSFVSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKLD 75 Q+T+ P D + R + S +R M+ LT+Y GASH+LL R+DL QE LD Sbjct: 17 QKTANRPEGPRLRDAMIRQLS-SAASSGKLRVAMHILTDYAGASHYLLARYDLIQEHGLD 75 Query: 76 SIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V++DWPFDL R +A LS L++ L F LP+++ P G +YCS+ Sbjct: 76 FVVTADWPFDLARGVATELSAACSRATELEKCLGLLQAKFVLLPDDLELPLGASRQYCSV 135 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 F+V R R+ L++L P G +I DRL ++GLLAAY ++ +DFELT RE+EC Sbjct: 136 MFNVGRTRLALVMLLPDGFVISPDRLRDVGLLAAYCVSLSTGRSQKADRDFELTERELEC 195 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L WI+EGKTSDEIA ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V Sbjct: 196 LFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 248 >gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 251 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 2/197 (1%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELF 109 L Y GASH+LL R DL +E L I++SDWPFDLVR + L+ + +++ L Sbjct: 55 LVTYAGASHYLLAREDLLEETGLKFIITSDWPFDLVRRLGAELANSQNRSSEMEKCLSLL 114 Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 P LP++++ P G+D +Y +L+F V RIR+ L+LLFP+ + DRL EI LL Y Sbjct: 115 QPRLLVLPDDVSVPFGIDRQYSALSFCVGRIRLSLLLLFPEHSVPSPDRLREIALLTGYC 174 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + + +D +LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTA Sbjct: 175 VSFGIASEAKAVRDIDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTA 234 Query: 230 TKTRSGAIAYAVRNNIV 246 TKTRS AIAYAVRNN+V Sbjct: 235 TKTRSEAIAYAVRNNLV 251 >gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 226 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 2/197 (1%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELF 109 L Y GASH+LL R DL +E L IV+SDWPFDLVR + L+ + +++ L Sbjct: 30 LVTYAGASHYLLARDDLLEETGLKFIVTSDWPFDLVRRLGIELTNSQNRSSEMEKCLSLL 89 Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 P LP++++ P G+D +Y +L+F V RIR+ L+LLFP+ + +RL EI LL Y Sbjct: 90 QPRLLLLPDDVSVPYGIDRQYSALSFCVGRIRLSLLLLFPEEAVPSPERLREIALLTGYC 149 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + + +D +LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTA Sbjct: 150 VSFGIASEAKTVRDIDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTA 209 Query: 230 TKTRSGAIAYAVRNNIV 246 TKTRS AIAYAVRNN+V Sbjct: 210 TKTRSEAIAYAVRNNLV 226 >gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 144 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/144 (58%), Positives = 107/144 (74%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 ++ ++F P F LPE+ P G +YCSLTF+V R R+ LM LF +G I+ +RL ++ Sbjct: 1 EKCMQVFQPNFALLPESAAVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDV 60 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 GLLA Y A+ + +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI Sbjct: 61 GLLAGYVASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYIT 120 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S+MRKTATKTRS AIA+AVRNN+V Sbjct: 121 SVMRKTATKTRSEAIAFAVRNNLV 144 >gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 224 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 124/204 (60%), Gaps = 15/204 (7%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELF 109 +++Y GA +L+ R+D + ++ D +++S+WPFDLVR + L + + + R F Sbjct: 27 ISDYTGAKCYLVARYDHYSDRHHDFVLTSNWPFDLVRNLGAGLVDAQARTSEVSRCLHAF 86 Query: 110 CPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P+F LPEN++P R C + ++V ++R+ + LLF K + DR+ + Sbjct: 87 EPLFQDVDGVAVNLPENLSP------RVCLVPYNVGKVRLLMALLFEKDAFVSHDRIRDA 140 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L A+Y A F +LT REVECL+WI EGKTSDEIA+I+GISRNTVNNYI Sbjct: 141 ALAASYHAVHFTEITTTSDSLSDLTDREVECLSWIGEGKTSDEIALIIGISRNTVNNYIT 200 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 SIM KT KTRS A+A+AVR I+ Sbjct: 201 SIMNKTGAKTRSEAVAFAVRQRII 224 >gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 124 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 78/124 (62%), Positives = 96/124 (77%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 P G +YCSLTF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + + Sbjct: 1 PEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDR 60 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVR Sbjct: 61 DFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 120 Query: 243 NNIV 246 NN+V Sbjct: 121 NNLV 124 >gi|218671090|ref|ZP_03520761.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 202 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 6/185 (3%) Query: 13 NREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68 ++ + Q +F S L R +L+ R+ + T + ALTEYVGASH+LL R DL Sbjct: 9 SKGERQMINFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYVGASHYLLARCDL 68 Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGM 126 QE LD +V+SDWPFDLV+ +A + Y L++ ++F P F LPE+ P G Sbjct: 69 IQESGLDFVVASDWPFDLVKDIANNLVSGYARSTELEKCMQVFQPNFALLPESADVPEGA 128 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 +YCSLTF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFEL Sbjct: 129 SRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDRDFEL 188 Query: 187 TGREV 191 T RE+ Sbjct: 189 TDREL 193 >gi|218680630|ref|ZP_03528527.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 186 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 2/134 (1%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 ++ V+ L R +LL R+ + T + ALTEYVGASH+LL R DL QE LD IVS Sbjct: 20 SAVVADLLPRDELLQRLHGVADTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVS 79 Query: 80 SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 SDWPFDLVR +A Y L++ ++F P F +P+N P G +YCSLTF+V Sbjct: 80 SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDNADVPDGASRQYCSLTFNV 139 Query: 138 ARIRIGLMLLFPKG 151 R R+ LM LF +G Sbjct: 140 GRSRLALMFLFRRG 153 >gi|218509885|ref|ZP_03507763.1| LuxR family transcriptional regulator [Rhizobium etli Brasil 5] Length = 49 Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 41/49 (83%), Positives = 47/49 (95%) Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 1 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 49 >gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA------LSEKDKYYNVLQRP 105 LT +GA ++LV Q++ IVSS+W FD + + L++ RP Sbjct: 30 LTAEIGADSYMLVAMVHDQDRNDARIVSSNWIFDAIELIGKRLIAGLAQGTLTVAPGTRP 89 Query: 106 TELFCPVFHTLPENITPPAGMDNRYC---------SLTFDVARIRIGLMLLFPKGRIILR 156 L V P+ +G + R SL +V R R+ + I + Sbjct: 90 RPL---VAAQAPDADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAASAGKIDQ 146 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 L + L Y + L+ RE ECL W+SEGKT+DE+AVILG+S NT Sbjct: 147 PALMKAQLKCCYALSHIPQLIAAAAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNT 206 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 VN+YI ++K A R+ AIA A+R+ I+ Sbjct: 207 VNSYITHAIQKFAASNRAMAIATAIRSGII 236 >gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 236 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 107/244 (43%), Gaps = 31/244 (12%) Query: 18 QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77 Q + S L +R DL S+ M+ LT +GA ++LV Q++ I Sbjct: 9 QSDTLGSRLTSRGDL----------TSFFMQ---LTAEIGADSYMLVAIVHDQDRNDARI 55 Query: 78 VSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 VSS+W FD + + L++ RP L V PE G + R Sbjct: 56 VSSNWIFDAIELIGKRLIAGLAQGALTVAPGIRPQPL---VASRAPEADGLVTGEEARLL 112 Query: 132 ---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 SL +V R R+ + I + L L Y + Sbjct: 113 DVLGHAEIYSLRLNVGRQRLFALFSAATAGSIDQPALMRAQLKCCYALSHIPQLIAAAAM 172 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI ++K A R+ AIA A+R Sbjct: 173 QDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIR 232 Query: 243 NNIV 246 + I+ Sbjct: 233 SGII 236 >gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 265 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM------ALSEKDKYYNVLQRP 105 LT +GA ++LV Q++ IVSS+W FD + + +L++ RP Sbjct: 59 LTAEIGADSYMLVAIVHDQDRNDARIVSSNWIFDAIELIGKRLIASLAQGALTVAPGIRP 118 Query: 106 TELFCPVFHTLPENITPPAGMDNRYC---------SLTFDVARIRIGLMLLFPKGRIILR 156 L V P+ +G + R SL +V R R+ + I + Sbjct: 119 RPL---VAARAPDADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAATSGQIDQ 175 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 L + L Y + L+ RE ECL W+SEGKT+DE+AVILG+S NT Sbjct: 176 PALMKAQLKCCYALSHIPQLIAAAAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNT 235 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 VN+YI ++K A R+ AIA A+R+ I+ Sbjct: 236 VNSYITHAIQKFAASNRAMAIATAIRSGII 265 >gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 247 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 20/215 (9%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 M L G +HF++ R L EQ+ + +V S+WP +LV+ E + +++R + Sbjct: 36 MRRLISRYGFAHFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGETFQTSELVERLRQ 95 Query: 108 LFCPVFHTLPENITPPAGMDNR--YCSLTFDVARIRIGLMLLFPKGRIIL---------- 155 PV PE + P + + L ++L G + Sbjct: 96 TKLPVTGG-PELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPFVAVLSGTRDEP 154 Query: 156 ----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L+ + LL ++ + +++D G +L+ REVECL W + GK+SDEIA+ILG Sbjct: 155 AGAERATLY-LALLQLFEC-LERTFDAGSGAREKLSSREVECLRWAAAGKSSDEIAIILG 212 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV++Y S RK R AIA A+R ++ Sbjct: 213 ISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247 >gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 247 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 18/234 (7%) Query: 30 SDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDL 86 +D+L + P + + M L G +HF++ R + EQ+ + ++ S+WP +L Sbjct: 15 TDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLMLSNWPAEL 74 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF----DVARIRI 142 V+ SE + +++R + P+ PE + P + ++ D+A + Sbjct: 75 VQQYDASETFQASLLIERLRQTKLPIAGG-PELMEPARKGAGKAPAILLPPHADMAHFAV 133 Query: 143 GLMLLFPKGRIIL----RDRL--WEIGLLAAYQANMF----KSYDVHWGKDFELTGREVE 192 L + + +++ RD E L +F +++D G +L+ RE+E Sbjct: 134 LLHTTYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAGSGAREKLSSREIE 193 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK+SDEIA+ILGIS TV++Y S RK R AIA A+R ++ Sbjct: 194 CLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247 >gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 321 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 22/216 (10%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 M L G +HF++ R L EQ+ + +V S+WP +LV+ E + +++R + Sbjct: 110 MRRLISRYGFAHFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGETFQTSELVERLRQ 169 Query: 108 LFCPVFHTLPENITPPAGMDN---RYCSLTFDVARIRIGLMLLFPKGRIIL--------- 155 PV T + PAG + L ++L G + Sbjct: 170 TKLPV--TGGPELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPFVAVLSGTRDE 227 Query: 156 -----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 R L+ + LL ++ + +++D G +L+ REVECL W + GK+SDEIA+IL Sbjct: 228 PAGAERATLY-LALLQLFEC-LERTFDAGSGAREKLSSREVECLRWAAAGKSSDEIAIIL 285 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GIS TV++Y S RK R AIA A+R ++ Sbjct: 286 GISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 321 >gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 208 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 7/103 (6%) Query: 151 GRIILRDR----LWEIGLLAAYQANMFKSY-DVHWGKDF--ELTGREVECLTWISEGKTS 203 G I+LR+R E+ L+A + +F+ Y +V D L+ RE++ ++W SEGKTS Sbjct: 105 GLILLRNRERPLHSEVALIAYDASIVFQRYFEVVLSLDSISGLSEREIQIVSWTSEGKTS 164 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA+ILG+S +TVN+YIA+I+RK R+ +A A+RN ++ Sbjct: 165 SEIAIILGLSEHTVNSYIAAILRKLQVVNRAQMVASALRNGLI 207 >gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565] gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565] Length = 258 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/62 (54%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE ECL W SEGKTS EIA ILGIS TVN ++ + KT +K RS AIA + + Sbjct: 182 ELSDREKECLFWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSG 241 Query: 245 IV 246 I+ Sbjct: 242 II 243 >gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m] Length = 260 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLVWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 43/62 (69%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE ECL W SEGKTS EIA ILGIS TVN ++ + KT +K R+ AIA ++ + Sbjct: 127 ELSDREKECLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSG 186 Query: 245 IV 246 I+ Sbjct: 187 II 188 >gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 43/62 (69%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE ECL W SEGKTS EIA ILGIS TVN ++ + KT +K R+ AIA ++ + Sbjct: 184 ELSDREKECLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSG 243 Query: 245 IV 246 I+ Sbjct: 244 II 245 >gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKD LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA Sbjct: 179 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 237 Query: 241 VRNNIV 246 V ++ Sbjct: 238 VSTGLL 243 >gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51] gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24] gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565] gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565] Length = 268 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKD LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA Sbjct: 187 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 245 Query: 241 VRNNIV 246 V ++ Sbjct: 246 VSTGLL 251 >gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1] gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m] gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKD LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA Sbjct: 179 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 237 Query: 241 VRNNIV 246 V ++ Sbjct: 238 VSTGLL 243 >gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei] gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 233 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 55/96 (57%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G ++L + +L++ ++ ++ Y + FK K T RE+ECL W +EGKT Sbjct: 130 GCLILRTENNKLLKEEHFKSIVIVIYMYDAFKRCKKKSNKTVNFTKREIECLKWATEGKT 189 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 S EI+ IL I+ TVN +IA+ +RKT + R AIA Sbjct: 190 SWEISKILTITDRTVNYHIANCIRKTNSSNRQQAIA 225 >gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30] gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila] gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida] gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp. salmonicida] gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia] gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 261 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 184 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 243 Query: 246 V 246 + Sbjct: 244 L 244 >gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTERETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 261 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 184 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 243 Query: 246 V 246 + Sbjct: 244 L 244 >gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTERETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii] Length = 260 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|294055674|ref|YP_003549332.1| transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293615007|gb|ADE55162.1| transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 269 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 G+DN +C++ +R I + KG E LL A QA++ + + W + Sbjct: 117 GIDN-HCAVHVPSSRNEINFFGIERKGGPDFTSE--EKALLEAAQAHLTNARALAWERSL 173 Query: 185 E--------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 LT RE E L+W++EGK++ EIA+++GIS VN++I +I KT T Sbjct: 174 SNHSPINPEKLAQHGLTTRESEILSWLAEGKSNGEIAILMGISSYRVNDHIQAIHTKTNT 233 Query: 231 KTRSGAIAYAVRNN 244 +R A +A+R N Sbjct: 234 PSRPAAALWAIRAN 247 >gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKD LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA Sbjct: 179 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKE 237 Query: 241 VRNNIV 246 V ++ Sbjct: 238 VSTGLL 243 >gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSAI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W S GKTS EIA ILGI+ TVN ++ + RKT + R AIA + N I Sbjct: 183 LTDRETECLFWASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria] Length = 258 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240 Query: 246 V 246 + Sbjct: 241 L 241 >gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ] Length = 260 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + + Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGM 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria] Length = 237 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I Sbjct: 163 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 222 Query: 246 V 246 + Sbjct: 223 L 223 >gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4] gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4] Length = 243 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 33/187 (17%) Query: 69 FQEQKLDSIVSSDWPF---DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125 FQ+ + IVSS+ F D + + +S +K+ ++ + E F TLP Sbjct: 80 FQDPAIRHIVSSEPSFVWSDFSKTLPISRDEKW--LMDQAKEFFVSNGFTLP-----ILS 132 Query: 126 MDNRYCSLTF------DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 +D R +TF D + R G+ L+ + R L Y AN ++ Sbjct: 133 LDGRRAGVTFAGSDIDDSPQARTGMALI--ASLVFAR-------ALELYGANQKQTT--- 180 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE E + WI+ GKT EI+VI G+S V ++ +IM K +RS AIA Sbjct: 181 -----RLTPREREVIGWIANGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVSRSHAIAE 235 Query: 240 AVRNNIV 246 A R ++ Sbjct: 236 AFRQKLI 242 >gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila] Length = 260 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TV ++ + RKT + TR AIA V + I Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 239 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +GL A D W LT RE+ECL W++ GKTS EI+ +LGISR+T + Y+ Sbjct: 155 VGLYAYDHVRALSQGDPAWSAG-TLTPRELECLKWVAAGKTSWEISQVLGISRHTADWYL 213 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A +RK R+ A+A A R ++ Sbjct: 214 AEAVRKLGAANRTHAVAEAFRRAMI 238 >gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1] Length = 260 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGVSTGH 242 Query: 246 V 246 V Sbjct: 243 V 243 >gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2] Length = 260 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS +IA ILGI+ TVN ++ + RKT + R AIA V I Sbjct: 183 LTDRETECLFWASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSRGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila] Length = 260 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 37/56 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238 >gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7] Length = 260 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V Sbjct: 183 LTERETECLFWASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSTGH 242 Query: 246 V 246 V Sbjct: 243 V 243 >gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 230 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 44/61 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ECLTW + GKTS EIA I+G+S +T+N+Y+ RK T R+ A+A A+R ++ Sbjct: 169 LTEREIECLTWTAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSL 228 Query: 246 V 246 + Sbjct: 229 I 229 >gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis] Length = 230 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 44/61 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ECLTW + GKTS EIA I+G+S +T+N+Y+ RK T R+ A+A A+R ++ Sbjct: 169 LTEREIECLTWTAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSL 228 Query: 246 V 246 + Sbjct: 229 I 229 >gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 43/61 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE ECL W S GK++ EI VIL IS TV +++ S +RK + TR+ A+A A+R +I Sbjct: 187 LTGREAECLKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHI 246 Query: 246 V 246 + Sbjct: 247 I 247 >gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 234 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 173 LTQREAEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W S+GKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTERETECLFWASDGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKRVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 234 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|282866538|ref|ZP_06275581.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558585|gb|EFB64144.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 220 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R + IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGMAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|320007816|gb|ADW02666.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 220 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R + IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGMAPIGANAARMHRRPPGTPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 173 LTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 102 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 41 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 100 Query: 246 V 246 V Sbjct: 101 V 101 >gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 172 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 111 LTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 170 Query: 246 V 246 V Sbjct: 171 V 171 >gi|239945114|ref|ZP_04697051.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991577|ref|ZP_04712241.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448577|ref|ZP_06587967.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351524|gb|EFE78428.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 220 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R + IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|182435268|ref|YP_001822987.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775907|ref|ZP_08235172.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178463784|dbj|BAG18304.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656240|gb|EGE41086.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 220 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R + IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|29828772|ref|NP_823406.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605877|dbj|BAC69941.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 234 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 173 LTQREADIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771] Length = 253 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE EC+ W++ GK+S +I ILGIS+NTV+ +I ++MRK T +R+ A A I Sbjct: 191 LSGRERECIAWVARGKSSSDIGTILGISKNTVDFHIKNVMRKLDTASRTVAAITAATLGI 250 Query: 246 V 246 + Sbjct: 251 I 251 >gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 245 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE ECL W S GKTS EIA IL +S +TVN+Y+ + RK R+ A+A A+R Sbjct: 181 DSPLTERERECLVWTSSGKTSVEIARILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIR 240 Query: 243 NNIV 246 + Sbjct: 241 QGFI 244 >gi|239983037|ref|ZP_04705561.1| two-component system response regulator [Streptomyces albus J1074] gi|291454869|ref|ZP_06594259.1| two-component system response regulator [Streptomyces albus J1074] gi|291357818|gb|EFE84720.1| two-component system response regulator [Streptomyces albus J1074] Length = 220 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 254 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 38/53 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+GRE ECL W+SEGKTS EIA ILGI+ TVN ++ + +RK+ K R +A Sbjct: 173 LSGREKECLFWVSEGKTSWEIAQILGITERTVNFHLNNAIRKSGCKNRYQTVA 225 >gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 248 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++++ RE EC+ WIS+GKTS EI ILG S+NTV+ ++ ++MRK T R+ A AV Sbjct: 184 YKISDRERECIHWISKGKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVEL 243 Query: 244 NIV 246 I+ Sbjct: 244 GII 246 >gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D E +GRE + L W ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236 >gi|297203085|ref|ZP_06920482.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712083|gb|EDY56117.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 212 VALRTGII 219 >gi|294632015|ref|ZP_06710575.1| two-component system response regulator [Streptomyces sp. e14] gi|292835348|gb|EFF93697.1| two-component system response regulator [Streptomyces sp. e14] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 211 VALRTGII 218 >gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D E +GRE + L W ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236 >gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D E +GRE + L W ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236 >gi|329940179|ref|ZP_08289461.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301005|gb|EGG44901.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 211 VALRTGII 218 >gi|239928247|ref|ZP_04685200.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291436576|ref|ZP_06575966.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|302557677|ref|ZP_07310019.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|89274975|gb|ABD65938.1| two-component response regulator [Streptomyces fungicidicus] gi|291339471|gb|EFE66427.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|302475295|gb|EFL38388.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 212 VALRTGII 219 >gi|302537555|ref|ZP_07289897.1| two-component system response regulator [Streptomyces sp. C] gi|302446450|gb|EFL18266.1| two-component system response regulator [Streptomyces sp. C] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 212 VALRTGII 219 >gi|302554896|ref|ZP_07307238.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472514|gb|EFL35607.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 212 VALRTGII 219 >gi|21224361|ref|NP_630140.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|256784453|ref|ZP_05522884.1| two-component regulator [Streptomyces lividans TK24] gi|289768332|ref|ZP_06527710.1| two-component system response regulator [Streptomyces lividans TK24] gi|3169043|emb|CAA19241.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|289698531|gb|EFD65960.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 212 VALRTGII 219 >gi|295835904|ref|ZP_06822837.1| two-component system response regulator [Streptomyces sp. SPB74] gi|333023773|ref|ZP_08451837.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|295825771|gb|EFG64471.1| two-component system response regulator [Streptomyces sp. SPB74] gi|332743625|gb|EGJ74066.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 211 VALRTGII 218 >gi|294815678|ref|ZP_06774321.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] gi|326444025|ref|ZP_08218759.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328277|gb|EFG09920.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 153 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 212 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 213 VALRTGII 220 >gi|328885874|emb|CCA59113.1| two-component regulator [Streptomyces venezuelae ATCC 10712] Length = 221 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 153 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 212 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 213 VALRTGII 220 >gi|302522529|ref|ZP_07274871.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302431424|gb|EFL03240.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 211 VALRTGII 218 >gi|297191334|ref|ZP_06908732.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720655|gb|EDY64563.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 220 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 212 VALRTGII 219 >gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 234 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY----DVHWGKDFE 185 YC+ D A + + ++ +G ++ + + +A+ + F+ +V G Sbjct: 103 YCTKDIDPAEL-VTVIRRVARGEYLINENVLSRPFVASRVLDQFRELAQIDEVSSGVFSP 161 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT REVE L ++ G ++ EIA +L IS TV N+I SI+RK A R+ A+ YA+R+ Sbjct: 162 LTPREVEILDCVARGNSNKEIARLLNISDQTVKNHITSILRKLAVNDRTQAVIYALRH 219 >gi|290956584|ref|YP_003487766.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260646110|emb|CBG69203.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 198 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 130 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 189 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 190 VALRTGII 197 >gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 245 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a] Length = 241 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Query: 138 ARIRIGLMLLFPKGRII-------LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 A+ R+GL+ L + + I L+ + A + + ++ D E +GRE Sbjct: 126 AQGRVGLLSLARRNKAISAEEFEALKPVTKAFAMAAHEKLSELENDDSSLNVQVEFSGRE 185 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + L W ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV Sbjct: 186 CDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236 >gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 245 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 257 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 18/238 (7%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPF 84 LP D + + L+ M +T G FL+ ++L + V S+ P Sbjct: 20 LPRGGDFASEIAKLETQFDIIRYMRRITHIFGFKTFLICSIPPIDMERLSAATVISNMPA 79 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----PENITPPAGMD-------NRYCSL 133 +L+ ++ ++R E P TL E TP + D N Sbjct: 80 ELLNKYDSLSMLRFSTGVRRLRETTTPFQITLEDWESEGGTPDSAADYIVMLRENGIFQA 139 Query: 134 TF----DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTG 188 + D R ++L+ P+ + + + E+ ++A + N W L+ Sbjct: 140 NYFPVHDAEGGRGAVILMGPEADLPMTAAM-ELQMIAIHVYNRLAEIGSVWKSSSTTLSE 198 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE++CL+W + GKTS EIA ILG+S +TVN+Y+ + +K R+ A+ A++ + Sbjct: 199 REIQCLSWTAAGKTSAEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 256 >gi|318061060|ref|ZP_07979781.1| two-component response regulator [Streptomyces sp. SA3_actG] Length = 198 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 130 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 189 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 190 VALRTGII 197 >gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 187 LTDREIDCLNWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 246 Query: 246 V 246 + Sbjct: 247 I 247 >gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 245 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 184 LTEREIDCLNWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens] Length = 234 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAV 208 +I L + L+ Y F+ K+FE LT RE+ECL W++ GKTS EI+ Sbjct: 135 LINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECLKWVAAGKTSWEISR 194 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IL + TVN ++ + MRK ++R A+ +R+ +V Sbjct: 195 ILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis EO147] Length = 347 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR+GA A A++ Sbjct: 284 FGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATAAAIK 342 >gi|298247008|ref|ZP_06970813.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549667|gb|EFH83533.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 644 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ REVE L ++ GK++ +I IL IS TV N+IASI KT R+GA A+A+R+ Sbjct: 581 LDLSEREVEVLRLVATGKSNRQIGEILVISERTVINHIASIFNKTGVSNRAGATAFAIRH 640 Query: 244 NIV 246 +V Sbjct: 641 KLV 643 >gi|90415637|ref|ZP_01223571.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium HTCC2207] gi|90332960|gb|EAS48130.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium HTCC2207] Length = 302 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT RE E LTWIS+GKT+ EIA+IL S T N ++ I RK + R+ A A ++ Sbjct: 236 EKFGLTAREAEVLTWISKGKTNHEIAIILDFSPRTANKHLEQIFRKLNVENRTTAAAVSL 295 Query: 242 R 242 R Sbjct: 296 R 296 >gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 245 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 183 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 242 Query: 246 V 246 + Sbjct: 243 I 243 >gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis C6786] Length = 345 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR+GA A A++ Sbjct: 282 FGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATAAAIK 340 >gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 42/65 (64%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LTGRE E LTW + GK+ EIA ILGIS TV ++ + RK + + A+A+AV Sbjct: 179 RDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAV 238 Query: 242 RNNIV 246 R+ ++ Sbjct: 239 RHALI 243 >gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae] Length = 246 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REVECL W S GK S +IA ILG+S +T Y+ S K T S AIA+AV N+ Sbjct: 178 LGTREVECLHWASRGKDSKDIAEILGLSEHTARGYLKSARYKLGCPTLSAAIAHAVHLNL 237 Query: 246 V 246 + Sbjct: 238 I 238 >gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum] Length = 261 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%) Query: 156 RDRLWEIGLLA-AYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +DR+ + LA A+ A + D D LT RE ECL W++EGK++ I ++ Sbjct: 167 QDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTPRETECLYWVAEGKSAWVIGQLVN 226 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ NTVN ++ +++RK R+ A+A A R I+ Sbjct: 227 VTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 261 >gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 277 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 20/239 (8%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPF 84 LP D + + L+ M +T+ G FL+ + ++L + V S+ P Sbjct: 40 LPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPA 99 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSL-------- 133 +L+ ++ ++R E P F + E+ G + Y ++ Sbjct: 100 ELLNKYDSLSMLRFSTGVRRLRETTTP-FQVMLEDWEREGGKPDSAADYIAMLRENGIFQ 158 Query: 134 -----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELT 187 D R ++L+ P+ + + + E+ ++A + N W + L+ Sbjct: 159 ANYFPVHDAEGGRGAVILMGPEAELPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVLS 217 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE++CL+W + GKTS EIA ILG+S +TVN+Y+ + +K R+ A+ A++ + Sbjct: 218 EREIQCLSWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276 >gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 258 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 38/56 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L W+ +GKT++EIA ILG+S TV N++ M+K +TR A+A A+ Sbjct: 189 ITAREAEVLAWVRDGKTNEEIAAILGLSMLTVKNHLRHAMQKLVVRTRGQAVARAI 244 >gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%) Query: 156 RDRLWEIGLLA-AYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +DR+ + LA A+ A + D D LT RE ECL W++EGK++ I ++ Sbjct: 159 QDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTPRETECLYWVAEGKSAWVIGQLVN 218 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ NTVN ++ +++RK R+ A+A A R I+ Sbjct: 219 VTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 253 >gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein [Sinorhizobium meliloti 1021] gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family, regulator of sinI [Sinorhizobium meliloti 1021] gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 245 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 42/65 (64%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LTGRE E LTW + GK+ EIA ILGIS TV ++ + RK + + A+A+AV Sbjct: 178 RDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAV 237 Query: 242 RNNIV 246 R+ ++ Sbjct: 238 RHALI 242 >gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 244 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 183 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 242 Query: 246 V 246 + Sbjct: 243 I 243 >gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 183 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 242 Query: 246 V 246 + Sbjct: 243 I 243 >gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 254 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 36/53 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L WIS GKT+ EI++ILGIS NTV N++ASI+ K R A A Sbjct: 198 LTSREREVLNWISSGKTNGEISMILGISPNTVKNHVASILGKLNAPNRLAATA 250 >gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 286 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 20/239 (8%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPF 84 LP D + + L+ M +T+ G FL+ + ++L + V S+ P Sbjct: 49 LPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPA 108 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-----PENITPPAGMD-------NRYCS 132 +L+ ++ ++R E P F L E P A D N Sbjct: 109 ELLNKYDSLSMLRFSTGVRRLRETTTP-FQILLEDWEKEGGKPDAAADYFAMLRENGLLQ 167 Query: 133 LTF----DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELT 187 + D R ++L+ P+ + + + E+ ++A + N W + L+ Sbjct: 168 ANYFPVHDAEGGRGAVILMGPEAGLPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVLS 226 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE++CL W + GKTS EIA ILG+S +TVN+Y+ + +K R+ A+ A++ + Sbjct: 227 EREIQCLNWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285 >gi|311898876|dbj|BAJ31284.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 246 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A A+R Sbjct: 184 ELSGREVEVLRLVAEGQSNKAIGVAMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 243 Query: 245 IV 246 I+ Sbjct: 244 II 245 >gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 E +GRE + L W ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV Sbjct: 180 EFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236 >gi|315657544|ref|ZP_07910426.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492016|gb|EFU81625.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 221 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 179 HWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H G+ D LT RE E LT +SE +T+ +IA L IS NTV +I SI++K R+GA Sbjct: 151 HAGEPSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGA 210 Query: 237 IAYAVRNNIV 246 +A+ +R I+ Sbjct: 211 VAHGIRQGII 220 >gi|304390336|ref|ZP_07372289.1| possible response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326092|gb|EFL93337.1| possible response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 221 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 179 HWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H G+ D LT RE E LT +SE +T+ +IA L IS NTV +I SI++K R+GA Sbjct: 151 HAGEPSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGA 210 Query: 237 IAYAVRNNIV 246 +A+ +R I+ Sbjct: 211 VAHGIRQGII 220 >gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 246 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 185 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 244 Query: 246 V 246 + Sbjct: 245 I 245 >gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] Length = 265 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 45/67 (67%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +G+ +LT REV+ L+W ++GKT+DE +VIL + R TV+ ++++ RK ++ A+A Sbjct: 197 FGRPPKLTSREVDVLSWAAKGKTADETSVILALGRETVHTHLSNACRKLQASNKTHAVAM 256 Query: 240 AVRNNIV 246 AV ++ Sbjct: 257 AVHRRLI 263 >gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 245 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 245 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|307325178|ref|ZP_07604382.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889324|gb|EFN20306.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A A+R Sbjct: 157 ELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 216 Query: 245 IV 246 I+ Sbjct: 217 II 218 >gi|297156497|gb|ADI06209.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A A+R Sbjct: 157 ELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 216 Query: 245 IV 246 I+ Sbjct: 217 II 218 >gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D E +GRE + L W ++GKTS+EI VI+G+ +TVN + +I RK R A YAV Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQASRYAV 236 >gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + EL+ RE E L W ++GK+S EIA+ILGIS NTVN ++ I +K ++ A AYA Sbjct: 176 AEQLELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYA 235 Query: 241 V 241 Sbjct: 236 A 236 >gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R + Sbjct: 184 LTDRELDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42] Length = 246 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+ECL W S GK S +I ILG+S +T Y+ S K T S AIA+AV N+ Sbjct: 178 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNL 237 Query: 246 V 246 + Sbjct: 238 I 238 >gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens] Length = 234 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAV 208 +I L + L+ Y F+ K+ E LT RE+ECL W++ GKTS EI+ Sbjct: 135 VIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECLKWVAAGKTSWEISR 194 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IL + TVN ++ + MRK ++R A+ +R+ +V Sbjct: 195 ILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 261 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+ECL W S GK S +I ILG+S +T Y+ S K T S AIA+AV N+ Sbjct: 193 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNL 252 Query: 246 V 246 + Sbjct: 253 I 253 >gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens] Length = 244 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D E + RE + L W ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV Sbjct: 181 DVEFSERECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 239 >gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85'] Length = 260 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL +EGKTS EIA ILGI+ VN ++ + RKT + R AI V + I Sbjct: 183 LTARETECLFLATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L I+EGKT+ EIA IL +S NT+ NY++ I+ K R+ A AYAVRNN+ Sbjct: 154 LNPQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVRNNL 213 Query: 246 V 246 + Sbjct: 214 M 214 >gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1] Length = 201 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W K+ L RE+E LTW++ GKTS EIA ILG+S+ TV+ +I + K TR+ A Sbjct: 133 WVKEVNLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHIDNARIKLGVATRTQAAIK 192 Query: 240 AVRNNIV 246 AV ++ Sbjct: 193 AVTGKLI 199 >gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L ++ G+T+ EIA +L IS TV N+I+SI+RK A R+ A+ YA+R Sbjct: 161 LSPRELQVLELVAAGRTNKEIAKVLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 217 >gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator [Pseudomonas fluorescens] Length = 241 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 38/57 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 EL+ RE E L W ++GK+S EIA+ILGIS NTVN ++ I +K ++ A AYA Sbjct: 180 ELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAA 236 >gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 246 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+ECL W S GK S +I ILG+S +T Y+ + K T S AIA+AV N+ Sbjct: 178 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSAAIAHAVHLNL 237 Query: 246 V 246 + Sbjct: 238 I 238 >gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 239 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 177 DVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++H G D L+ RE+ECLT + GK +IA+ILG+S +TV Y+ S K + Sbjct: 166 EIHGGNDQALHLSPREIECLTLAARGKDHKDIALILGLSGHTVQGYLKSARHKLGSVNIP 225 Query: 235 GAIAYAVRNNIV 246 AIA A+R+ I+ Sbjct: 226 QAIAEAIRSRII 237 >gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] Length = 213 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +I+EG ++ EI+ LGIS TV N+++SI+RK R+ YA++NN+ Sbjct: 153 LTAREKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSSILRKLNLMDRTQVAVYALKNNL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L ++ G+T+ EIA L IS TV N+I+SI+RK A R+ A+ YA+R Sbjct: 161 LSARELEVLELVAAGRTNREIAAQLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 217 >gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] Length = 218 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 43/70 (61%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ GK +LT RE++ L I+ G + EIAV L IS TV N+I++I RK R+ A Sbjct: 146 DIMTGKVNDLTKRELQVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQA 205 Query: 237 IAYAVRNNIV 246 +A++N IV Sbjct: 206 AVFAIKNKIV 215 >gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] Length = 214 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 DV K ELT RE+E L I+ G + EIA L IS TV N++++I +K R+ A Sbjct: 142 DVLKDKVSELTRRELEVLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQA 201 Query: 237 IAYAVRNNIV 246 +A++NNI+ Sbjct: 202 AVFAIKNNII 211 >gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 235 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R+VE L W +GKTSDEIA IL IS+ TV+ ++ + M + T+S A A+A R Sbjct: 174 LTKRQVEVLRWTGDGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASR 230 >gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)] Length = 241 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +GRE + L W ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV Sbjct: 181 FSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236 >gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L ++ G+T+ EIA+ L IS TV N+++SI+RK A R+ A+ YA+R Sbjct: 161 LSPRELEVLELVAAGRTNKEIALNLDISNQTVKNHVSSILRKLAVNDRTQAVVYAMR 217 >gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 231 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE +CL W EGKT+ EI+ ILGIS++TV +I + K +++ AIA A+R + Sbjct: 170 LTAREWDCLLWAGEGKTNWEISAILGISKSTVTKHIMAARAKLGAVSKAHAIAMAIRTKL 229 Query: 246 V 246 + Sbjct: 230 L 230 >gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 249 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE ECL W +EGKTS EIA ILGIS T ++ + R+ +R A+A AV Sbjct: 183 ELTAREHECLLWAAEGKTSWEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQG 242 Query: 245 IV 246 ++ Sbjct: 243 LI 244 >gi|311696551|gb|ADP99424.1| two-component response regulator [marine bacterium HP15] Length = 279 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 FELT RE + L WI+ GKT+ EI IL +S TVN ++ + RK + R+ A A A+R Sbjct: 216 FELTLRESDVLLWIANGKTNREIGQILDMSPRTVNKHLEQVFRKLGVENRTAAAASAIR 274 >gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 217 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 165 LAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA+ F D H K+ +LT RE E LT I+EG+ + EIA L IS TV N++ Sbjct: 131 LASQLVKEFNRRDDHHDKEPREGKLTKREYEVLTLIAEGQNNKEIASNLFISEKTVKNHV 190 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 ++I +K R+ A YA ++NI Sbjct: 191 SNIFKKIHVNDRTQAAIYAYKHNI 214 >gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++ECLTW++ GKTS EI ILG SR TV +I M ++R+ A +A I Sbjct: 200 LTARQLECLTWVARGKTSAEIGEILGRSRYTVEFHIKEAMDALNIRSRTAAAVHATVQGI 259 Query: 246 V 246 + Sbjct: 260 I 260 >gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 339 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE E L+W+S+GKT+ +IA ILG+S TVN ++ I K +TR+ A A A Sbjct: 272 QQVALTPRETEVLSWLSKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAAVA 330 >gi|192360065|ref|YP_001981449.1| two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190686230|gb|ACE83908.1| two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 312 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F +TGRE + L WI+ GKT+ EI IL +S TVN ++ I +K + R+ A A A+ Sbjct: 247 QQFAVTGREADVLRWIANGKTNREIGQILDMSPRTVNKHLEQIFKKLGVENRTSAAAAAI 306 Query: 242 R 242 + Sbjct: 307 K 307 >gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++ECLTW++ GKTS EI ILG S TV+ +I M ++R+ A +A + I Sbjct: 200 LTARQLECLTWVARGKTSAEIGEILGRSHYTVDYHIKEAMEALNIRSRTAAAVHATVHGI 259 Query: 246 V 246 + Sbjct: 260 I 260 >gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 237 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L W + GKTS EIA IL +S +TVN Y+ S MRK R+ +A A+R ++ Sbjct: 176 ITTRELEVLHWAANGKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] Length = 195 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++CL W EGKT EI+VILGISR+TV +I S K + AIA A+R I Sbjct: 134 LSPRELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVNKPHAIAIAMRLKI 193 Query: 246 V 246 + Sbjct: 194 L 194 >gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m] Length = 260 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL SEGKTS +IA IL I+ TVN ++ + RKT + R AIA V + I Sbjct: 183 LTDRETECLFCASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSGI 242 Query: 246 V 246 + Sbjct: 243 L 243 >gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE E L ++EG T+DEI LG+SRNT N++ ++ K +++ A+A A Sbjct: 149 GGGAALTARERETLDLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGARSKLEAVAVA 208 Query: 241 VRNNIV 246 R ++ Sbjct: 209 RREGLI 214 >gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 269 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 40/57 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE +CL W ++GKT++EIA ILG+ T+ YI ++M++ ++++ A+ A+ Sbjct: 196 KLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSKTQAVVKAI 252 >gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H DF LT RE E L I+ G+ E+ LGI+R TV +Y+ SI K +R+ A+A Sbjct: 151 HENSDFHLTAREREVLAGIASGERGKEVGARLGITRRTVESYLNSIYTKLNVDSRAAAVA 210 Query: 239 YAVRNNIV 246 A+ + ++ Sbjct: 211 IAIEHGLL 218 >gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 301 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L W+++GKT+ +IA ILG+S TVN ++ I K +TRS A A A + Sbjct: 236 EVPLTPRETEVLAWLAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRSAATAVASK 295 >gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 254 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 42/66 (63%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT R++E L W+ +GKT+ EI+VILG+S + V ++ I RK R+ A+A A Sbjct: 189 GRGAELTPRQIEILEWLRQGKTNWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEA 248 Query: 241 VRNNIV 246 +++ Sbjct: 249 ASRSVI 254 >gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] Length = 214 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F H G ELT RE E L I++G T+ +IA L IS TV N+I +I RK K Sbjct: 141 FNRTVAHSGD--ELTEREKEVLGLIAQGSTNADIASALFISEKTVKNHITNIFRKLQVKD 198 Query: 233 RSGAIAYAVRNNIV 246 R+ A YA++N +V Sbjct: 199 RTQAALYAIKNRLV 212 >gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 228 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE +CL W EGKT+ E + ILGISR+TV +I + K +++ AIA A+R + Sbjct: 167 LTAREWDCLLWAGEGKTNWETSAILGISRSTVTKHIMAARAKLGAVSKAHAIATAIRTKL 226 Query: 246 V 246 + Sbjct: 227 L 227 >gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 308 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E L+WI++GKT+ +IA ILG+S TVN ++ I K +TR+ A A A Sbjct: 245 VDLTPRETEVLSWIAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALA 301 >gi|300870842|ref|YP_003785713.1| two-component system regulator [Brachyspira pilosicoli 95/1000] gi|300688541|gb|ADK31212.1| two-component system regulator [Brachyspira pilosicoli 95/1000] Length = 320 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 36/51 (70%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 DF LT RE + L+++ GKT+ EI++I IS NTVNN++A+I K+ K R Sbjct: 260 DFNLTKREKQILSYLLSGKTNKEISLIFDISLNTVNNHVANIYYKSGVKNR 310 >gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 232 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVECL W S G TS EIA LGISR+T + Y+ +K + R+ A+ A R Sbjct: 170 DLTPREVECLKWSSNGLTSSEIAEKLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099] gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099] Length = 248 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE EC+ WI+ GK+S EI ILGIS NTVN ++ + MRK T +R+ A A Sbjct: 185 DLSLREKECILWIARGKSSWEIGKILGISGNTVNFHLKNAMRKLDTASRTVAAIKATSLG 244 Query: 245 IV 246 IV Sbjct: 245 IV 246 >gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 240 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K T E++CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+ Sbjct: 174 KPIAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 233 Query: 242 RNNIV 246 R NI+ Sbjct: 234 RLNII 238 >gi|225620688|ref|YP_002721946.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] gi|225215508|gb|ACN84242.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] Length = 317 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 37/51 (72%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I K+ K R Sbjct: 257 DINLTRREKEILSYLLDGKTNKEVSLILSISLNTVNNHVANIYEKSGVKNR 307 >gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] Length = 234 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ECL W++ GKT +IA +LG+S+ T +I RK +TRS A+A V + + Sbjct: 174 LTHRELECLRWVAAGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSGL 233 >gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE ECL W+S GKT+ +I+VILGIS NT+N Y+ +++ K R A+ A+ N++ Sbjct: 180 REKECLLWVSRGKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLI 237 >gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L ++ G T+ EIA L IS TV N+I+SI+RK A R+ A+ YA+R Sbjct: 161 LSARELEVLELVAAGHTNREIAARLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 217 >gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 71 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE ECL W + GKTS EIAVILG+S TVN +I + K R A+A A+ + Sbjct: 6 LSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIALSQGL 65 Query: 246 V 246 + Sbjct: 66 L 66 >gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ECL WI+ GK+S EIA+ILGIS N V ++ +M K ++R A+ A+ + + Sbjct: 178 LTHRELECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMASGV 237 Query: 246 V 246 V Sbjct: 238 V 238 >gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 201 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++CL W + GKTS EIA I+ +S +T+N+Y+ +K T R+ A+A A+R + Sbjct: 140 LSEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGL 199 Query: 246 V 246 + Sbjct: 200 I 200 >gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 173 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K T E++CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+ Sbjct: 107 KPIAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 166 Query: 242 RNNIV 246 R NI+ Sbjct: 167 RLNII 171 >gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 242 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + T D SL + + G + PK G++I + R L E+G++ Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRSVVNGHAYIHPKVTGKLINQLRRMTYLDEMGVI 159 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + A M G+D LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 160 SGAAAGMEPGVKFVAGEDNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 219 Query: 226 RKTATKTRSGAIAYAVR 242 +K R+ A+ +++ Sbjct: 220 QKMEVDDRTQAVIQSIK 236 >gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 242 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W + GK+S +I VIL IS NTVN ++ + M K TR AI A+R + Sbjct: 180 LTARERECLIWSARGKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 240 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K T E++CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+ Sbjct: 174 KPIAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 233 Query: 242 RNNIV 246 R NI+ Sbjct: 234 RLNII 238 >gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 240 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K T E++CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+ Sbjct: 174 KPIAFTSSELDCLRLTAGGRKSSEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 233 Query: 242 RNNIV 246 R NI+ Sbjct: 234 RLNII 238 >gi|196231768|ref|ZP_03130625.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224240|gb|EDY18753.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +I+EG+T+ E+A +LG+S T ++ A++M+K KT I YA+RN I Sbjct: 154 LTSREREAVKFIAEGRTNKELADVLGVSLRTAESHRAAVMQKLGLKTIGELIRYALRNGI 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 236 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 43/63 (68%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GA+A A+ Sbjct: 172 LKMSDRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNASNKAGAVAIAMMR 231 Query: 244 NIV 246 ++ Sbjct: 232 GLI 234 >gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 241 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 40/171 (23%) Query: 109 FCPVFHTLPENITP---------PAGMDNRYCSLTFDVA---RIRIGLMLLFPKGRIILR 156 FCPV +I P P M + D+ ++ +G++ +FP L Sbjct: 77 FCPVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVVFIFPS----LD 132 Query: 157 DRLW-----------------EIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLT 195 RL+ E+G+LA +F +YD + L+ RE+E L Sbjct: 133 SRLYFMRFDGDRSPLSQCEVNELGMLAM---AVFDTYDRLRRTELMNVDVLSVRELEVLR 189 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W ++GKTS EI IL +S +T+N Y+ + M+K R+ +A A+R ++ Sbjct: 190 WTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240 >gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 214 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E + I+EGK + EIA L IS TV N+I+SI RK R+ A YA++ N Sbjct: 154 ELTAREREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTN 213 Query: 245 I 245 + Sbjct: 214 L 214 >gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 321 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 40/63 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ R+ ECL W++ GK+S IA I+GIS +TV+ +IA M+ +R+ A +AV Sbjct: 257 LELSPRQQECLAWVARGKSSWAIAAIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTT 316 Query: 244 NIV 246 ++ Sbjct: 317 GLI 319 >gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 246 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++CL W + GKTS EIA I+ +S +T+N+Y+ +K T R+ A+A A+R + Sbjct: 185 LNEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGL 244 Query: 246 V 246 + Sbjct: 245 I 245 >gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 262 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 40/63 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ R+ ECL W++ GK+S IA I+GIS +TV+ +IA M+ +R+ A +AV Sbjct: 198 LELSPRQQECLAWVARGKSSWAIASIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTT 257 Query: 244 NIV 246 ++ Sbjct: 258 GLI 260 >gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] Length = 244 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 41/65 (63%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT RE E LTW + GK+ EIA ILGIS TV ++++ RK + + A+A AV Sbjct: 177 RDTRLTSRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNVVSNTQAVAQAV 236 Query: 242 RNNIV 246 R+ ++ Sbjct: 237 RHALI 241 >gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] Length = 326 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE EC+ W++ GK+S +I VI+ IS NTVN +I ++MRK T +R+ A A+ I Sbjct: 264 LSLREKECVLWVARGKSSWDIGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIKAISLGI 323 Query: 246 V 246 + Sbjct: 324 I 324 >gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 5/191 (2%) Query: 59 SHFLLVRWDLFQEQKLDSIVS-SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 +H ++ + F ++ D +V D+ D V L+ K+ V P + +F Sbjct: 56 THKIIYSDNAFMQRTDDYVVPMEDYAADKVFPQILAGKE-VIKVTNSPVYVHDVIFQHAG 114 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKS 175 + P ++RY + +I +++F + +I L A N + Sbjct: 115 NAGSKPCENEDRYILAKMN-HETQIASLIVFVVNAKESEGKFEQIACYLHAHLLTNYVRI 173 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V +L+GRE LTW+ GKTS E+A IL I+ NTVN +I +I K R Sbjct: 174 LSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFHIKNIKNKLNATNRQH 233 Query: 236 AIAYAVRNNIV 246 A+A A+ +I+ Sbjct: 234 AVAIAIAKSII 244 >gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 292 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L+ +G +L R+ E GLL+ Q + ++ + F+LT RE E L W++ GKT+ EI Sbjct: 195 LWHQGERLLFTRI-EPGLLS-IQRHAAQAEPEALARIFQLTAREAESLYWVALGKTNKEI 252 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 IL IS TVN ++ + K +TR+ A A Sbjct: 253 GEILQISPRTVNKHLEHVFEKLGVETRTAAAA 284 >gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 333 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LTGRE E L W+++GKT+ +I ILG S TV+ ++ + K +TR+ A A A+ Sbjct: 268 FRLTGREAEVLHWVAQGKTNRDIGDILGTSPRTVHKHLEHVFAKLGVETRTSAAAMAL 325 >gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 478 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I+EG+ ++EIA+ LG+S+NTV NY+A++ K + R+ A+ +A Sbjct: 401 DLTARERQVLELIAEGQKNEEIALALGLSKNTVRNYVANLYAKIGVQGRAEAVIWARERG 460 Query: 245 IV 246 ++ Sbjct: 461 VI 462 >gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 258 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W+ EGK+S +IA++LGI TV ++A++MRK R+ +A A+R + Sbjct: 195 LSRREREVLDWLKEGKSSWDIAMVLGIRERTVRFHVANLMRKLGAVNRAQTVALALRRGL 254 Query: 246 V 246 + Sbjct: 255 I 255 >gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family [Tepidanaerobacter sp. Re1] Length = 215 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G ++ EI++ LGIS TV N+++SI+RK R+ A +A++N + Sbjct: 155 LTAREKEVLADIAKGMSNREISIDLGISEKTVKNHVSSILRKLNLMDRTQAAVFAIKNRL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri DSM 4166] Length = 222 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K + F+LTGREVE L W+S GKT+ +I ILG+S TVN ++ + K +TR Sbjct: 150 KQIQAMLSQRFQLTGREVEVLHWVSCGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETR 209 Query: 234 S 234 + Sbjct: 210 T 210 >gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 240 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 41/65 (63%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K E T E++CL + G+ +EIA +L ++ N VNN+I S+++K TR+ A+ A+ Sbjct: 174 KPIEFTRSELDCLRLTAGGRKGNEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSAL 233 Query: 242 RNNIV 246 R NI+ Sbjct: 234 RLNII 238 >gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A Sbjct: 174 KMSARELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230 >gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++S G ++ EIA L IS NTV N++ I+ K R+ A AYAVRN Sbjct: 161 ELTEREREVLQYLSAGASNKEIARALFISENTVRNHVRHILDKLHLSNRAQAAAYAVRNG 220 Query: 245 I 245 I Sbjct: 221 I 221 >gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5] gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 41/64 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L W +EGK+++EI++IL ISR+TV ++ I +K R AIA A+R Sbjct: 179 DTNLSERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAKALR 238 Query: 243 NNIV 246 ++ Sbjct: 239 AGLI 242 >gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] Length = 239 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%) Query: 145 MLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 ML+F + L +R L +G+ A+ + + + + LT RE+ECL W + G Sbjct: 134 MLIFGGPEVRLNEREISVLHLVGIYASNKVRELVGANTNRPR-HRLTPRELECLKWSAAG 192 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 KTS EI+ IL IS++T + Y+AS RK R+ A+A R ++ Sbjct: 193 KTSWEISQILNISQHTADWYLASAARKLHAANRTHAVAEGFRLGLI 238 >gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 254 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 41/63 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++L+ RE ECL W++ GKTS EI ILGI+ T ++ + M+K RS A+A A+++ Sbjct: 190 YKLSERERECLRWVAAGKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQH 249 Query: 244 NIV 246 ++ Sbjct: 250 GVI 252 >gi|298244586|ref|ZP_06968392.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552067|gb|EFH85932.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 523 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 163 GLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 L+A+ QA ++ K + + +LT RE+E + +++G+ + +IA L IS+ TV +++ Sbjct: 439 ALVASLQAGDVGKKAVLKRSQATDLTQREIEVVRLLTQGQNTPQIARTLSISKKTVEHHL 498 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A I K R+ A+AYAV+ N+V Sbjct: 499 AHIYTKFGVSCRTAAVAYAVQQNLV 523 >gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 281 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 8/105 (7%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 TF+V +GL++ P +LR ++ I + A +A V K + L+ RE+E Sbjct: 180 TFNVQDSLMGLLM--PHIDNVLR-KIQHIEPVDASEAE-----SVSVIKSYNLSVRELEI 231 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + W+ +GKT EIA+IL IS+NTV +++ + K R+ A+A Sbjct: 232 IDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVA 276 >gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens GS-15] Length = 246 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E ++W++ GK EI+VILGIS TV + ++I++K RS A+A A+ + Sbjct: 183 LTPREIEVISWLANGKNYWEISVILGISERTVKFHTSTIVQKLGAANRSHAVAIAISTGL 242 Query: 246 V 246 + Sbjct: 243 I 243 >gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 219 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ Y A + + D +D LT RE+E L I++G +++EIA L ISR TV +++ Sbjct: 138 LVGRYAARIRPTGD--AARDIPLTPRELEVLRLIADGLSNNEIAAALVISRETVKTFVSR 195 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ YA R +V Sbjct: 196 ILTKLGLRDRVQAVIYAYRQGLV 218 >gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 237 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D L+ RE ECL W+++GK + EI+ IL IS NTV ++ +IM+K R A+ A+ Sbjct: 171 EDCSLSDRERECLLWVAQGKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAI 230 >gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL WISEGKT+ EI+ IL S TV+ +I ++ K T RS +I+ ++ Sbjct: 177 QLTPREKECLAWISEGKTTWEISKILDCSERTVSFHITNLQTKLGTNNRSQSISKSI 233 >gi|89093728|ref|ZP_01166675.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082124|gb|EAR61349.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 303 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 E+T RE E L WI+ GKT+ EIA ILG+S TVN ++ + K + R+ A A+R Sbjct: 239 LEITERESEVLHWIANGKTNREIAEILGMSPRTVNKHLEQLFPKLGVENRTAAAGVALR 297 >gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + T D +L + + G + PK G++I + R L E+G + Sbjct: 100 VFETLRKGATGYLLKDMEAEALINAIRSVMTGHSYIHPKVTGKLINQLRRMTYLDEMGAV 159 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + A G+D LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 160 SGAAAGKETGVKFVAGEDNPLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSIL 219 Query: 226 RKTATKTRSGAIAYAVR 242 +K R+ A+ ++++ Sbjct: 220 QKMEVDDRTQAVIHSIK 236 >gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L ++ G ++ EIA L IS TV N+I SI+RK A R+ A+ YA+R+ Sbjct: 162 LTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHG 220 >gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae NTUH-K2044] gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE+E L W +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV Sbjct: 177 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE+E L W +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV Sbjct: 177 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 301 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F+LT RE + L WI+ GKT+ EI IL +S TVN ++ + RK + R+ A A A+R Sbjct: 238 FDLTLRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKMNVENRTAAAANAIR 296 >gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE+E L W +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV Sbjct: 165 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 224 Query: 243 NNIV 246 ++ Sbjct: 225 TGLI 228 >gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE+E L W +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV Sbjct: 177 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 41/57 (71%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT+ ++GA+A A Sbjct: 174 KMSKRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTSAANKAGAVAIAA 230 >gi|171912646|ref|ZP_02928116.1| methyl-accepting chemotaxis sensory transducer [Verrucomicrobium spinosum DSM 4136] Length = 331 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W+ EGK++ EI VILGIS +TV ++ ++ K + R A Y Sbjct: 265 DETLTAREKEVLEWMQEGKSNPEIGVILGISTHTVKRHVERVLAKLGVENRVAAALYG 322 >gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 304 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ +LT RE E L WI+ GKT+ EIA IL +S TVN ++ I K + R+ A A+ Sbjct: 238 KELDLTDRESEVLHWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTSAAGVAL 297 Query: 242 R 242 R Sbjct: 298 R 298 >gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LTGREVE L W++ GKT+ +I IL +S TVN ++ + K +TR+ A + A+ Sbjct: 161 FQLTGREVEVLRWVACGKTNRDIGTILDLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218 >gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 246 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L RE E L W +EGKTS EIA I G+S +TVN+Y +K R+ A+ A+R Sbjct: 185 LNARETEVLQWTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIR 241 >gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] Length = 296 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE + L W + GKT+ E A+ILG+S TVN+++ +K ++ A+A A+ + Sbjct: 234 LSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMAANKTHAVAIAINRGV 293 Query: 246 V 246 + Sbjct: 294 I 294 >gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 217 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L WI+ GKT+ EIA ILGI TV YI + K K RS A A+R I Sbjct: 155 LSNRETEILHWIALGKTNSEIATILGIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGI 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 248 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 43/64 (67%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +FEL+ RE+E L W+ +GK+S +I+VIL IS TV ++ +IM K +R+ A+A A+ Sbjct: 182 NFELSKREIEVLNWVKKGKSSWDISVILAISVRTVKFHVENIMVKLNAVSRTHAVAIALS 241 Query: 243 NNIV 246 ++ Sbjct: 242 AGVI 245 >gi|295134891|ref|YP_003585567.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Zunongwangia profunda SM-A87] gi|294982906|gb|ADF53371.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Zunongwangia profunda SM-A87] Length = 207 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 158 RLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R IG A Y+ + ++ W DF+LT RE+E L I +GK++ EI+ IL S+ T Sbjct: 118 RKVRIGETAFYEEHTKAVSNIKIWTSDFKLTNRELEILQLIKDGKSTKEISEILHRSQFT 177 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243 + + +++RK K SG + +A++N Sbjct: 178 IETHRKNMIRKLNLKNSSGLLHFAMKN 204 >gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] Length = 304 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L P GR+ + L+ + A +A ++ FELT RE E L WI++GK++ +I Sbjct: 210 LHPLGRVGPDENLFRV--TAEDEAGQVQALQ----GSFELTQREAEVLIWIAKGKSNKDI 263 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ILG+S TVN ++ I K + R+ A A Sbjct: 264 GEILGLSPRTVNKHLEQIFVKLGVENRASAAVRA 297 >gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 240 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 37/55 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ R+ ECL W+ +GKTS EI +I+GIS +TV+ +++ M+ +R+ A +A Sbjct: 178 LSPRQQECLYWVGQGKTSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFA 232 >gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 10/87 (11%) Query: 169 QANMFKS----------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 QANM + +D ++ LT REVE L I+EG + EIA L IS TV Sbjct: 128 QANMTRELVREFNKITLHDKSKSEESNLTAREVEVLELIAEGMINKEIAKRLYISEKTVK 187 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245 N++++I RK R+ A YA ++N+ Sbjct: 188 NHVSNIFRKLNVSDRTQAAIYAFKHNM 214 >gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 213 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE + LT + +G T+ E+A ++ IS TV N++ SI RK K R+ A YA++ Sbjct: 147 EIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVKNHLTSIFRKLGVKDRTHAAIYALK 206 Query: 243 NNIV 246 N IV Sbjct: 207 NRIV 210 >gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida F1] gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A Sbjct: 174 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230 >gi|146343657|ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196463|emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families (two-component signal transduction system) [Bradyrhizobium sp. ORS278] Length = 305 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +F LT RE E L+W+S+GKT+ +IA ILG+S TV+ ++ I K + R+ A A Sbjct: 236 EFSSEFGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295 Query: 239 YA 240 A Sbjct: 296 IA 297 >gi|116694039|ref|YP_728250.1| response regulator [Ralstonia eutropha H16] gi|113528538|emb|CAJ94885.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 297 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E + W++ GKT+ +IA ILG+S TVN ++ I K +TR+ A+A RN Sbjct: 236 LTLREAEVMAWVARGKTNRDIADILGMSPRTVNKHLEHIYEKLGVETRTAAVAATRRN 293 >gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L I+ G ++ EIA LGIS TV N+I+SI+RK + R+ A+ +A+R Sbjct: 172 LSEREIEVLERIAAGNSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALR 228 >gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A Sbjct: 174 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230 >gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE+E L W +EGKTS EI++IL IS NTVN + ++ +K ++ YAV Sbjct: 177 EMKFSKRELEILKWTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACYAVA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A + Sbjct: 154 HLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATS 213 Query: 239 YAV 241 A+ Sbjct: 214 VAL 216 >gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 257 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 36/53 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+GRE+E + W+++GKT+ EI +IL IS TV N++ I +K R+ A+A Sbjct: 201 LSGRELEIMDWVTKGKTNQEIGMILDISAFTVKNHLQRIFKKLNVMNRAQAVA 253 >gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (luxr family) [Ralstonia solanacearum PSI07] gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum PSI07] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 41/65 (63%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ D LTGREVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K ++ A Sbjct: 168 DLAGDSDDSLTGREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAA 227 Query: 237 IAYAV 241 + A Sbjct: 228 VVRAA 232 >gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510] gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510] Length = 310 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L WI+ GK + +I ILGIS TVN ++ + K + R+ A A A+R Sbjct: 248 LTAREAEVLLWIANGKPNRDIGEILGISPRTVNKHLEQVFAKLGVENRASAAALAIRT 305 >gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 39/56 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A Sbjct: 175 MSERELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230 >gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 216 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I+EG + EIA L IS TV N+I++I +K R+ A YA ++NI Sbjct: 155 LTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKHNI 214 >gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 279 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A Sbjct: 218 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 274 >gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 258 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE+E LT +++G TS EI L IS +TV+ YI I R+ + K R +A A RN Sbjct: 195 LELTRREMEVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRN 254 Query: 244 NIV 246 ++ Sbjct: 255 GLL 257 >gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L I+ G ++ EIA LGIS TV N+I+SI+RK + R+ A+ +A+R Sbjct: 174 LSEREIEVLERIAAGSSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALR 230 >gi|38230162|gb|AAR14178.1| AHL receptor-like protein [Aeromonas veronii] Length = 75 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + R+ Sbjct: 33 LTERETECLFWASEGKTSGEIACILGITERTVNYHLNPVTRR 74 >gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 18/118 (15%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 R S T+D +R+ L + R+ L L ++ +M + ++ + K Sbjct: 141 RCSSFTYDEVELRLQL---------LARESL---SALTRFEDDMVMAPEMRFSK------ 182 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 183 REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +F LT RE E L+W+S+GKT+ +IA ILG+S TV+ ++ I K + R+ A A Sbjct: 236 EFSSEFGLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295 Query: 239 YA 240 A Sbjct: 296 IA 297 >gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain [Thiomonas sp. 3As] gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 223 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 41/72 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S ++ + LT RE E L + +G T EIAV LG+SR+TV +Y+ I RK +R+ Sbjct: 151 SSNLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISSRA 210 Query: 235 GAIAYAVRNNIV 246 A AVR +V Sbjct: 211 EAALEAVRRGLV 222 >gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 217 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE + LT I+ GK++ EI L IS TV N+I +I RK R+ A YAV+ Sbjct: 152 DEPLSRRETDVLTLIARGKSNKEIGDELYISEKTVKNHITNIFRKIQVTDRTQAALYAVK 211 Query: 243 NNIV 246 N IV Sbjct: 212 NRIV 215 >gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 234 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 38/55 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L W + GKT+ ++A IL +S +TVN +I S++ KT ++GAIA A Sbjct: 174 LSERELEVLKWSAGGKTAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVA 228 >gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 240 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] Length = 240 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 240 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 240 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 254 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ REVE L +I+ G ++ EIA L IS TV N+I SI++K + R+ A+ +A+R+ Sbjct: 164 LSSREVEILDYIARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVHALRH 221 >gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A Sbjct: 174 KMSERELEVLRWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNASNKAGAIAIAA 230 >gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 221 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT REVE L W++ GKT+ +I ILG+S TVN ++ + K +TR+ A + A+ Sbjct: 161 FQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218 >gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 226 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 7/98 (7%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSD 204 KG I+ + L +A+ F+ D+ +D E LT REVE L I+ G ++ Sbjct: 121 KGEYIINENLITKPFVASRVLKQFR--DLAALEDEENLFTPLTSREVEILDCIARGMSNK 178 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 EIA + IS TV N+I SI+RK A R+ A+ YA++ Sbjct: 179 EIARQMSISDQTVKNHITSILRKLAVNDRTQAVIYALK 216 >gi|254562561|ref|YP_003069656.1| response regulator [Methylobacterium extorquens DM4] gi|254269839|emb|CAX25817.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens DM4] Length = 302 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A A R+ Sbjct: 238 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 297 >gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 254 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|260575467|ref|ZP_05843466.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259022387|gb|EEW25684.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 245 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REV+CL+W++ G D+IA LGI TV+ YI S K +TR A+A A+ Sbjct: 183 LTPREVDCLSWLAAGLRPDQIAETLGIGYRTVDKYIVSARGKLRARTRDQAVAKAL 238 >gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ATCC 35469] gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC 35469] Length = 251 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA I Sbjct: 191 FSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGI 250 Query: 246 V 246 + Sbjct: 251 I 251 >gi|188582813|ref|YP_001926258.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179346311|gb|ACB81723.1| two component transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 301 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A A R+ Sbjct: 237 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 296 >gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 217 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 43/73 (58%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K D D LT RE E + ++EG ++ E+A LGIS TV + A+IM+K K+ Sbjct: 143 KPKDEEQTVDGRLTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSF 202 Query: 234 SGAIAYAVRNNIV 246 S + YA+RN+I+ Sbjct: 203 SDLVRYAIRNHII 215 >gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ECD227] Length = 240 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA I Sbjct: 180 FSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGI 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|218531623|ref|YP_002422439.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218523926|gb|ACK84511.1| two component transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 300 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A A R+ Sbjct: 236 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295 >gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L IS+G + EIA L +S TV NYI SI +K + R A YA+RNNI Sbjct: 158 LTNRELNILYEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217 >gi|163852797|ref|YP_001640840.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163664402|gb|ABY31769.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 300 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A A R+ Sbjct: 236 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295 >gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia fergusonii B253] Length = 251 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA I Sbjct: 191 FSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGI 250 Query: 246 V 246 + Sbjct: 251 I 251 >gi|240140122|ref|YP_002964599.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens AM1] gi|240010096|gb|ACS41322.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens AM1] Length = 300 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A A R+ Sbjct: 236 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295 >gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 131 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 67 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 126 Query: 245 IV 246 +V Sbjct: 127 LV 128 >gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium cellulolyticum H10] Length = 216 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I+EG + EIA L IS TV N+I++I +K R+ A YA ++NI Sbjct: 155 LTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKHNI 214 >gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627] gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627] Length = 228 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 165 EMHFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 224 Query: 243 NNIV 246 ++ Sbjct: 225 TGLI 228 >gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 240 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQI 230 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 231 ACYAAATGLI 240 >gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L I+EG ++ EIA L ISR TV +++ I+ K + R A+ YA R Sbjct: 155 DIPLTPRELEVLRLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVYAYR 214 Query: 243 NNIV 246 +V Sbjct: 215 QGLV 218 >gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 240 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K E T E++CL + G+ EIA +L ++ N VNN+I S ++K TR+ A+ A+ Sbjct: 174 KPIEFTPGELDCLRLTAGGRKGSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSAL 233 Query: 242 RNNIV 246 R NI+ Sbjct: 234 RLNII 238 >gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 213 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG + EIA L IS TV N++++I +K + R+ A YA++NN Sbjct: 150 LTRREIDVLKLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDRTQAAVYAIKNNF 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 192 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 123 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 182 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 183 ACYAAATGLI 192 >gi|170751099|ref|YP_001757359.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657621|gb|ACB26676.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 196 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LTGRE E LTW S GKTS EIA+IL + TVN + M++ R+ A+A A+ Sbjct: 135 LTGREREVLTWASRGKTSAEIALILDLRERTVNFHFDQAMKRLNVVNRTHAVARAL 190 >gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato Max13] gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato K40] gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 254 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato str. DC3000] Length = 254 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] Length = 240 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] Length = 252 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ R++ECL W EGK+S I IL +S TV+ ++AS RK TR A+A A Sbjct: 186 KLSARQIECLRWAREGKSSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241 >gi|218459661|ref|ZP_03499752.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5] Length = 65 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E + W++ GKT+ EI ILGIS TVN +I++ K + + +A A+RN I Sbjct: 4 VTPRELEIIGWMAAGKTAAEIGAILGISPITVNTHISNAKAKLSVFKETALVAAALRNGI 63 Query: 246 V 246 + Sbjct: 64 I 64 >gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] Length = 303 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LTGRE E L WI+ GKT+ E A IL +S TVN ++ I K R+ A A++ Sbjct: 235 ELDLTGRESEVLYWIANGKTNRETAEILAMSPRTVNKHLEQIFSKLGVDNRTSAAGVALK 294 >gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ELT RE E L ++ G+ S EIAV LGIS TV +++ASI K +R+ A+A A+ Sbjct: 159 EGMELTEREREILQGVARGERSKEIAVRLGISIRTVGSHLASIYTKLGVDSRASAVALAI 218 Query: 242 RNNIV 246 ++ Sbjct: 219 ERGLL 223 >gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 301 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+ECLTW + GKT ++IAVIL +S +TV Y+ + +K RS A+A A+ Sbjct: 237 SLSKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAM 293 >gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 233 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG+ + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 170 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 229 >gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 251 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 20/171 (11%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDNRYCSLTF----- 135 PF MA KD Y+ +R ++ F H L + I P G + SL+ Sbjct: 93 PFRWREAMAAFRKDAYH---RRMEQMMVDAFGHGLEDGYIFPIHGRNGILASLSLAGKPI 149 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 +++ + I L+ + R W + L ++ + D LT RE+E L Sbjct: 150 ELSPVEIALL------EAVARKAFWRLLDLKGEA----QALETVLPADTPLTRREMEILH 199 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ ++ Sbjct: 200 YLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250 >gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 506 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 12/169 (7%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDVA--RIRIGLM 145 M + + D+ L + ++ PVF NI P + ++ + S L V R +G+M Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQSYVNKFHLSSLLVCPVIDNRRMLGIM 396 Query: 146 LLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWI 197 LL GR D R+ E L A + + + Y LT RE E L I Sbjct: 397 LLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQLI 456 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + EI L IS TV +++SI+RK K R+ A+A A+R I+ Sbjct: 457 ADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505 >gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 240 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K T E++CL + G+ S EIA +L +S + VNN I S++RK TR+ A+ A+ Sbjct: 174 KPVAFTQSELDCLRLTAGGRKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSAL 233 Query: 242 RNNIV 246 R NI+ Sbjct: 234 RLNII 238 >gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 506 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 14/170 (8%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL-----TFDVARIRIGL 144 M + + D+ L + ++ PVF NI P ++ + S D R+ +G+ Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQPYVNKFHLSSLLVCPVIDQRRL-LGI 395 Query: 145 MLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTW 196 MLL GR D R+ E L A + + + Y LT RE E L Sbjct: 396 MLLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQL 455 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + EI L IS TV +++SI+RK K R+ A+A A+R I+ Sbjct: 456 IADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505 >gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 301 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE + L WI+ GKT+ EIA IL +S TVN ++ I RK + R+ A A ++ Sbjct: 237 LHVTHREAQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295 >gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 212 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ LT +EV+ L IS GK + EIA I+ IS TV NY+++I++K R+ A +Y + Sbjct: 147 KEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVSNRTEAASYWM 206 Query: 242 RNN 244 RN+ Sbjct: 207 RNS 209 >gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 222 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ +E L +SEGKT+ EIA L + TV NY++SI+ K R+ A AYAV +N+ Sbjct: 159 LSQQEKHVLLLVSEGKTNREIAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVEHNL 218 >gi|71907077|ref|YP_284664.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71846698|gb|AAZ46194.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 308 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT RE E L W+ +GKTS++I ILG S TVN ++ + K +TR+ A A+ Sbjct: 245 FRLTQREAEVLYWVVQGKTSNDIGDILGNSPRTVNKHLEHVFEKLGVETRTAAANLAM 302 >gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 186 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++G ++ EIA L IS TV +I I RK K+RS A+ YAVRN Sbjct: 122 ELTEREKEILFELAKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181 Query: 245 IV 246 +V Sbjct: 182 LV 183 >gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 257 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L I+ G T+ +IA L IS TV N+I+SI+RK + R+ A+ YA+R Sbjct: 167 LSDREIEVLEHIASGATNKDIADALKISTQTVKNHISSILRKLSLNDRTQAVLYALR 223 >gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 254 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L I++GK + EIA +L IS TV +++ +IM K R+ A+ AV+ Sbjct: 146 ELTSREIQVLQEIAKGKANKEIAAVLAISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRG 205 Query: 245 IV 246 I+ Sbjct: 206 II 207 >gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 254 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAQAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 233 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT REVE L W+++GKT+ EI++I+ IS TVN ++ + + K T + A+A A Sbjct: 170 IELTAREVEVLKWVADGKTASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAA 227 >gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] Length = 240 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis] gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis] Length = 213 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT REVE L W++ GKT+ +I ILG+S TVN ++ + K +TR+ A + A+ Sbjct: 149 FQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 206 >gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 254 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADHLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG+ + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 150 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 209 >gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 210 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L ++ G T+ EIA +LGIS TV ++ I+RK R+ A +AVR Sbjct: 147 DVPLTQRESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVR 206 Query: 243 NNIV 246 N+V Sbjct: 207 KNLV 210 >gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046] gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227] gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli E24377A] gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC 3083-94] gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019] gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei Ss046] gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii Sb227] gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A] gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94] gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019] gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407] gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae CDC 74-1112] gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G] gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68] gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli E1520] gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli TA007] gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9] gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9] Length = 244 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240 Query: 243 NNIV 246 ++ Sbjct: 241 TGLI 244 >gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1] gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 239 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG+ + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 176 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235 >gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAKVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] Length = 238 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV + K + LT RE E L W +EGKTS EIA ILG++ TVN ++++ M+K + Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227 Query: 236 AIAYAV 241 A AV Sbjct: 228 AAIRAV 233 >gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 237 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L W +EGKT+ E+ IL +S TVN ++ S MRK + A+A A + + Sbjct: 176 HLSPREIEVLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAKAAQIH 235 Query: 245 IV 246 ++ Sbjct: 236 VI 237 >gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI] gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989] gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989] gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073] gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89] gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] Length = 244 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240 Query: 243 NNIV 246 ++ Sbjct: 241 TGLI 244 >gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli H489] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75] gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75] Length = 228 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 165 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 224 Query: 243 NNIV 246 ++ Sbjct: 225 TGLI 228 >gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1] gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|253996413|ref|YP_003048477.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera mobilis JLW8] gi|253983092|gb|ACT47950.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Methylotenera mobilis JLW8] Length = 274 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 36/53 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE+E ++WI GKT+ EI +IL IS+NTV +++ I +K R+ A+A Sbjct: 198 LSEREIEVISWIKAGKTNQEIGMILSISQNTVKSHLKRIFQKLNIGRRAQAVA 250 >gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11] gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088] gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE11] gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088] Length = 244 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240 Query: 243 NNIV 246 ++ Sbjct: 241 TGLI 244 >gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS] gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC 8739] gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a] gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli UMN026] gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280] gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299] gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS] gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a] gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026] gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280] gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli E482] gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|311280044|ref|YP_003942275.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308749239|gb|ADO48991.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 216 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 35/184 (19%) Query: 68 LFQEQKLDSIVSSDWPFDLVRC------MALSEKDKYYN--VLQRPTELFCPVFHTLPEN 119 LF Q +DS W F L C + + Y+N +++ P + VFHT + Sbjct: 58 LFDMQSIDSQAMHQWCFALQNCPKQFKVLLFNTPQHYHNRDIVEWP--MISGVFHTETDE 115 Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 G+ N V R FPK ++ Y Sbjct: 116 EHLIDGIKN--------VCRGE----KCFPK-------------VINDYIVQQLNLSHPQ 150 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + ELT RE E L + +G ++ EIA +L IS NTV +I ++ +K + K R+ A+ + Sbjct: 151 WNECVELTRREKEILCKLRQGASNIEIAHLLFISENTVKTHIYNLFKKLSVKNRTQAVFW 210 Query: 240 AVRN 243 A RN Sbjct: 211 ANRN 214 >gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736] gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736] gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357] gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli H120] gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3] gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli E1167] gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii AYE] gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB900] gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB056] gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB058] gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB059] gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR family) [Acinetobacter baumannii AYE] gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] Length = 238 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV + K + LT RE E L W +EGKTS EIA ILG++ TVN ++++ M+K + Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227 Query: 236 AIAYAV 241 A AV Sbjct: 228 AAIRAV 233 >gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 198 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV + K + LT RE E L W +EGKTS EIA ILG++ TVN ++++ M+K + Sbjct: 128 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 187 Query: 236 AIAYAV 241 A AV Sbjct: 188 AAIRAV 193 >gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 215 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 22/208 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 ++++Y+ S + ++ + QE +V P +V + + E D Y + RP Sbjct: 17 SISDYLEISGYTVISAENGQEAL--ELVDKHKPHLIVTDITMPEMDGYDLVKRIRSRPAF 74 Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII---LRDR 158 PV HT ++ G DN Y F++ + + + L + ++I LR R Sbjct: 75 RLLPVIFLTAHTAIQSRIRGYQLGCDN-YLPKPFELDELGVVIRALLERSQLIESELRSR 133 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + E ++ + F + LT RE + L ++EG+++ +I L +S T+ Sbjct: 134 VSESPVVTNGATSTF-------SHEISLTEREQQVLDLLTEGRSNVKIGEKLHLSPRTIE 186 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT + R+ + +A++N+++ Sbjct: 187 KYVSSLLRKTESNNRAELVRFALKNHLI 214 >gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC O1] gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli CFT073] gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89] gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11] gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88] gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39] gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972] gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605] gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1] gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11] gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88] gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39] gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82] gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972] gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE15] gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034] gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972] gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146] gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1 str. NRG 857C] gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3] gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1] gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3] gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli WV_060327] gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1] gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli H252] gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli H263] gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2] gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1] gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Escherichia coli AA86] gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] Length = 218 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D H K LT RE+E L +++G+++ +IA L IS TV N++ +I +K R+ Sbjct: 145 SVDHHDKKHSTLTERELEVLKQVAKGQSNKDIAKTLFISEKTVKNHLTNIFQKIGVADRT 204 Query: 235 GAIAYAVRNNIV 246 A YA++ +V Sbjct: 205 QAALYAIKEKLV 216 >gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302] gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302] Length = 244 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240 Query: 243 NNIV 246 ++ Sbjct: 241 TGLI 244 >gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] Length = 238 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV + K + LT RE E L W +EGKTS EIA ILG++ TVN ++++ M+K + Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227 Query: 236 AIAYAV 241 A AV Sbjct: 228 AAIRAV 233 >gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli SMS-3-5] gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9] gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5] gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W] gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli M863] gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli] Length = 242 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECLTW++ GK+S EI I+ IS +TVN ++ + M K T +R A A Sbjct: 178 KLTSREAECLTWVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLG 237 Query: 245 IV 246 ++ Sbjct: 238 LI 239 >gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22] gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli EC4100B] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp. 4_1_40B] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli O127:H6 str. E2348/69] gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6 str. E2348/69] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E ++W S+GK++ EI IL I++ T ++A+ RK R+ A+A A+R+ I Sbjct: 180 LTPREREVISWASQGKSAWEIGEILHITQRTAEEHLATAARKLGAVNRTHAVALAIRHKI 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A] gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171] gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1] gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354] gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271] gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591] gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A] gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171] gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1] gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042] gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354] gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010] gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180] gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271] gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143] gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli TW10509] gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143] Length = 240 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 201 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 164 LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ Q + + H +L+ REVE L W + GKTS EIA ILG+S+ TV+ ++ Sbjct: 116 LMSIVQTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K TR A+ A + I+ Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199 >gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241] gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293] gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241] gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 239 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG+ + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 176 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235 >gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 213 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 217 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE ECL W++ GKT EI++ILGIS TV + +I K T +R I AVR + Sbjct: 155 LSPRERECLIWLANGKTRWEISLILGISEETVKYHFKNIRAKFGTYSRHEIIIQAVRLGL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|296126426|ref|YP_003633678.1| LuxR family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018242|gb|ADG71479.1| transcriptional regulator, LuxR family [Brachyspira murdochii DSM 12563] Length = 320 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 36/49 (73%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I K+ K R Sbjct: 263 NLTRREREILSYLLDGKTNKEVSLILDISLNTVNNHVANIYEKSGVKNR 311 >gi|291441190|ref|ZP_06580580.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291344085|gb|EFE71041.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 133 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G LT R+ L+ ++EG + +IA++LG S +TV N I IM + + R+ A+A+ Sbjct: 67 GGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAVAH 126 Query: 240 AVRNNIV 246 AVR+ +V Sbjct: 127 AVRHGLV 133 >gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale DSM 17629] gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale M104/1] Length = 214 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ A + M + + D LT RE+E L ++ GK + +IA + IS TV N+I+ Sbjct: 129 SLIPALNSKMIQKNEDELKIDA-LTKREMEVLKEMAVGKFNRDIAKEMKISERTVKNHIS 187 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 SI +K R+ A +A+RNNI+ Sbjct: 188 SIFKKLEVTDRTQAAVFAIRNNII 211 >gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDEKMRSCTAIKLTRRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ S M+K K R A+ AV Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70] gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70] Length = 221 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 158 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 217 Query: 243 NNIV 246 ++ Sbjct: 218 TGLI 221 >gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 250 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG+ + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 187 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 246 >gi|239932840|ref|ZP_04689793.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G LT R+ L+ ++EG + +IA++LG S +TV N I IM + + R+ A+A+ Sbjct: 78 GGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAVAH 137 Query: 240 AVRNNIV 246 AVR+ +V Sbjct: 138 AVRHGLV 144 >gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 213 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 222 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 99/210 (47%), Gaps = 19/210 (9%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 ++++Y+ S ++++ QE +V P +V +A+ E D + V +P Sbjct: 17 SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74 Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL---RDR 158 PV HT E G DN Y F++ + + + L + ++I R R Sbjct: 75 RLLPVIFLTAHTSTEERIRGYQLGCDN-YLPKPFELDELGVVIRALLERSQLIEAEWRSR 133 Query: 159 LWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + E L+ + + +K + H + LT RE + L ++EG ++ +I L +S T Sbjct: 134 INEP--LSNHTSPRYKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNVKIGNSLHLSSRT 191 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V Y++S++RKT + R+ + +A+ N+++ Sbjct: 192 VEKYVSSLLRKTDSSNRAALVRFALENDLI 221 >gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia thailandensis MSMB43] Length = 230 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 26/137 (18%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANM 172 AG+DN I + L P GR++L D W L Q N+ Sbjct: 104 AGLDNG------------ISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYLLGMQFNL 151 Query: 173 -FKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 F+S LT RE CLTW++ GK+S IA +L IS+ TV+ +I + M K Sbjct: 152 QFQSMRTCSPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLN 211 Query: 230 TKTRSGAIAYAVRNNIV 246 T++R+ A A R ++ Sbjct: 212 TRSRTFAAVKATRQGLI 228 >gi|241203502|ref|YP_002974598.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857392|gb|ACS55059.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 65 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + W++ GKT+ EI ILGIS TVN +IA+ + + +A A+RN I Sbjct: 4 VTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNGI 63 Query: 246 V 246 + Sbjct: 64 I 64 >gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] Length = 238 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV + K + LT RE E L W +EGKTS EIA ILG++ TVN ++++ M+K + Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227 Query: 236 AIAYAV 241 A AV Sbjct: 228 AAIRAV 233 >gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 315 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F+LT RE E L W ++GKTS +I ILG S TVN ++ + K +TR+ A A A Sbjct: 251 FKLTSRESEVLYWATKGKTSRDIGDILGSSPRTVNKHLEHVFVKLGVETRTAAAALA 307 >gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 123 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 40/67 (59%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G D LT RE+E L+ ++EG ++ IA LGIS +T ++ S++ K R+ A+A+ Sbjct: 55 AGPDVGLTPREIEVLSLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAH 114 Query: 240 AVRNNIV 246 A R ++ Sbjct: 115 AARRGVI 121 >gi|241518604|ref|YP_002979232.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863017|gb|ACS60681.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 864 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L W+ GK++ EIA +L +S TV+++++SI+ K KTR+ A ++A Sbjct: 803 LTTREMDVLRWVDLGKSNGEIAALLFVSAKTVDHHVSSILAKLNAKTRTAAASHA 857 >gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S T+ ++ S M+K K R A+ AV Sbjct: 219 SVATITLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ++ RE+E L ++ G+T+ EIA L IS TV N+I+SI+RK A R+ A+ +A++ Sbjct: 178 MSPREIEVLELVAAGQTNKEIAARLEISNQTVKNHISSILRKLAVNDRTQAVVFALQ 234 >gi|289811480|ref|ZP_06542109.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 115 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 46 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 105 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 106 ACYAAATGLI 115 >gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] Length = 201 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L W + GKTS EIA ILG+S+ TV+ +I + +K TR A+ A I Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 213 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE + L + +G ++ E+A L IS TV N++ SI RK K R+ A+ YA++ Sbjct: 147 EMKLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLTSIFRKLEVKDRTQAVIYALK 206 Query: 243 NNIV 246 N +V Sbjct: 207 NKVV 210 >gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. W3110] gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12 substr. W3110] gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] Length = 201 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L W + GKTS EIA ILG+S+ TV+ +I + +K TR A+ A I Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S T+ ++ S M+K K R A+ AV Sbjct: 219 SVATITLHLNSAMQKLGAKNRVQAVVRAVH 248 >gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis z3032] gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032] Length = 241 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +L+ RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 178 EMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236 >gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 238 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG+ + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 175 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 234 >gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense] Length = 275 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W SEGKT E VILG+S +TV Y+ S K + + A + A ++ + Sbjct: 211 LSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLATKSGL 270 Query: 246 V 246 + Sbjct: 271 L 271 >gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 251 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L +++EG TS EI +L IS +TV+ Y+ + K K R A+A A R Sbjct: 187 DTPLTRREMEILHYLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFR 246 Query: 243 NNIV 246 + ++ Sbjct: 247 HRLI 250 >gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 301 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE + L WI+ GKT+ EIA IL +S TVN ++ I RK + R+ A A ++ Sbjct: 237 LHVTHRESQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295 >gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei DM98] gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 14] gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 91] gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 9] gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei B7210] gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 7894] gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei NCTC 13177] gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 112] gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei BCC215] gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei] gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 230 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 26/137 (18%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANM 172 AG+DN I + L P GR++L D W L Q N+ Sbjct: 104 AGLDNG------------ISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYLLGMQFNL 151 Query: 173 -FKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 F+S LT RE CLTW++ GK+S IA +L IS+ TV+ +I + M K Sbjct: 152 QFQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLN 211 Query: 230 TKTRSGAIAYAVRNNIV 246 T++R+ A A R ++ Sbjct: 212 TRSRTFAAVKATRQGLI 228 >gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661] gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + EL+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ ++ +YA Sbjct: 177 NMELSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAA 235 >gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 201 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L W + GKTS EIA ILG+S+ TV+ +I + +K TR A+ A I Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC1212] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638] gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718] gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638] gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431] gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14] gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185] gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185] Length = 244 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 181 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240 Query: 243 NNIV 246 ++ Sbjct: 241 TGLI 244 >gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC 9905] gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii ATCC BAA-894] gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894] Length = 241 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +L+ RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 178 EMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236 >gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. H 2687] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 34/51 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQA 234 >gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 EDL933] gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. Sakai] gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC4024] gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. TW14359] gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK2000] gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK966] gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. EDL933] gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. Sakai] gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. TW14359] gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. 493-89] gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. USDA 5905] gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. LSU-61] gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1044] gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L I+ G ++ EIA L IS TV N+I+SI+RK + R+ A+ YA+R Sbjct: 173 LSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQAVLYALR 229 >gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638] gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638] Length = 240 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMKFSKREKEILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236 Query: 243 NNIV 246 + Sbjct: 237 TGFI 240 >gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 250 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 32/194 (16%) Query: 64 VRWD-LFQEQK---LDSIVSSDWPF-------DLVRCMALSEKDKYYNVLQRPTELFCPV 112 V WD ++Q++K +D +VS F + + LSE +N L+R E+ Sbjct: 78 VEWDNIYQKKKFQYIDPVVSCSASFRRSFNWASVPSMITLSEVQ--FNFLERAQEM---- 131 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 G+ +F +I L + G + ++L + L+ A A Sbjct: 132 ------------GLKEGASIGSFSTRQIYKELTITSVCGCSLNPEQLASLELINAVSAQA 179 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K + K LTGRE E L W SEGK+S EI +I I+ TV ++ +I +K + Sbjct: 180 MKRLILPAEK---LTGRESEILAWSSEGKSSWEIGMICSITERTVKFHLKNIYKKLNVQN 236 Query: 233 RSGAIAYAVRNNIV 246 R+ AI A+R ++ Sbjct: 237 RAQAIVCAIRLGLI 250 >gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. G5101] Length = 240 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 210 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 39/60 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L+ I+EG ++ EIA L +S TV N++ +I RK K R+ A Y ++NN Sbjct: 144 ELTDREMQILSLIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203 >gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 202 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ GK + EIA L IS NTV N++ +I+ K +R A YA+R N+ Sbjct: 138 LTERELEVLGLVARGKANKEIATQLFISENTVKNHVRNILEKLQLHSRVEAALYAMRRNL 197 Query: 246 V 246 + Sbjct: 198 I 198 >gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510] gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L W S GKTS E ++LG+S TVN Y+ + +K T+ A A AVR Sbjct: 226 KLSPREREVLDWASRGKTSWETGMVLGLSEKTVNFYLRNACQKMNAATKVQAAAQAVREG 285 Query: 245 IV 246 ++ Sbjct: 286 LI 287 >gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 246 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L ++ G T+ IA L IS TV N+I+SI+RK A R+ A+ YA+R Sbjct: 176 LSPRELQVLELVAAGHTNKAIAQSLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 232 >gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium] Length = 238 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W+++GK++ IA IL IS +TV Y+ +RK TR A+A V + Sbjct: 177 LSPRELECLRWVAQGKSNTVIADILKISDDTVAFYLRGALRKLGVSTRMQAVALCVTFGL 236 Query: 246 V 246 + Sbjct: 237 I 237 >gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 208 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +S+G ++ EIA L +S TV N++ +I RK K R+ A Y ++N Sbjct: 144 ELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIYMLKNQ 203 Query: 245 IV 246 + Sbjct: 204 TI 205 >gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 234 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 6/126 (4%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWGK-- 182 ++ SL + + G ++L P I+ D RLW G ++ ++ Sbjct: 109 EDGASSLAGAIRQAVAGNLVLSPTSSAIISDQARLWANGSAQPSESTSKQTQTQQSASPL 168 Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E LT + + KT+ +IA L +S TV ++++I+ K + R GA+ YA Sbjct: 169 PHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATVKTHVSAIIAKLGVQDRVGAVVYA 228 Query: 241 VRNNIV 246 +++N+V Sbjct: 229 LQHNLV 234 >gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli] Length = 241 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 178 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 237 Query: 243 NNIV 246 ++ Sbjct: 238 TGLI 241 >gi|254504710|ref|ZP_05116861.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222440781|gb|EEE47460.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 248 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L+P GR+ + L+ + A + ++ V +F+LT RE E L WI++GK++ +I Sbjct: 154 LYPLGRVGPDENLFRV--TAEDEEGQVRALQV----EFQLTQREAEVLIWIAKGKSNKDI 207 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 IL +S TVN ++ I K + R+ A A Sbjct: 208 GEILNLSPRTVNKHLEQIFVKLGVENRASAAVRAA 242 >gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 240 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K E T E++CL + G+ EIA +L ++ N VNN+I S ++K TR+ A+ A+ Sbjct: 174 KPIEFTRNELDCLRLTAGGRKGAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSAL 233 Query: 242 RNNIV 246 R NI+ Sbjct: 234 RLNIL 238 >gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC BAA-895] gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895] Length = 240 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 177 EMRFSKREKEILKWTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 TGLI 240 >gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 254 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L I+ G ++ EIA L IS TV N+I+SI+RK + R+ A+ YA+R Sbjct: 173 LSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQAVLYALR 229 >gi|325971781|ref|YP_004247972.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027019|gb|ADY13778.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 295 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 2/67 (2%) Query: 169 QANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 +A + KS ++ G +++ +T RE + IS+G T+ EIA LGIS NTVNN++A+I Sbjct: 218 RAEVVKSKELVLGDLEEYHITEREFAVIQLISKGLTNKEIASQLGISANTVNNHVANIYG 277 Query: 227 KTATKTR 233 KT ++R Sbjct: 278 KTQVRSR 284 >gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT RE+E L + EG ++ +IA L IS TV ++++I +K K+RS AI +AV Sbjct: 144 EDKTLTPREMEVLLVLVEGLSNKDIATRLYISDKTVKIHVSNIFKKFDVKSRSQAIIFAV 203 Query: 242 RNNIV 246 +NN+V Sbjct: 204 QNNLV 208 >gi|258592172|emb|CBE68481.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 367 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE E L W++ GKT+ E+A ILG+S TV ++ I +K +TR A Sbjct: 304 DLTRREAEVLLWVAHGKTNVEVAEILGLSSRTVQKHLEHIFKKLGVETRVAA 355 >gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC 796-83] Length = 159 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 96 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 155 Query: 243 NNIV 246 ++ Sbjct: 156 TGLI 159 >gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 99 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ Sbjct: 30 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 89 Query: 237 IAYAVRNNIV 246 YA ++ Sbjct: 90 ACYAAATGLI 99 >gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella australiensis 50-1 BON] Length = 217 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 46/80 (57%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L QA+ ++V D +LT RE E L +++G ++ EIA L IS TV N+++S Sbjct: 135 VLKEDQASPLYGFNVGIRYDDDLTQREREVLALVAKGLSNGEIAKKLFISEKTVKNHLSS 194 Query: 224 IMRKTATKTRSGAIAYAVRN 243 I RK R+ A YA+++ Sbjct: 195 IFRKLNVSDRTQAAVYAIKH 214 >gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 73 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ YAVRN Sbjct: 9 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 68 Query: 245 IV 246 +V Sbjct: 69 LV 70 >gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] Length = 307 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E + W+S+GK+S EIA ILGIS +V Y+ S+ RK R+ A+ A+ Sbjct: 226 LSAREKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKAI 281 >gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 251 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 188 EMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 247 Query: 243 NNIV 246 ++ Sbjct: 248 TGLI 251 >gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 247 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + + LT E CL S G TS+EI + ++ TVN+Y+ I RK + RS AIA Sbjct: 180 FNQQIGLTAGETTCLELASRGMTSEEIGAQMDLTTETVNSYMKLITRKLGARNRSQAIAD 239 Query: 240 AVRNNIV 246 A+R N++ Sbjct: 240 ALRLNLI 246 >gi|121608696|ref|YP_996503.1| response regulator receiver protein [Verminephrobacter eiseniae EF01-2] gi|121553336|gb|ABM57485.1| two component transcriptional regulator, LuxR family [Verminephrobacter eiseniae EF01-2] Length = 361 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G F+LT RE E L W+ +GK + +I ILG S TV ++ + K +TR+ A A A Sbjct: 289 GLAFKLTAREAEVLYWVVQGKINRDIGAILGASPATVKKHLERVFAKLGVETRTAAAAMA 348 Query: 241 V 241 + Sbjct: 349 L 349 >gi|38230165|gb|AAR14179.1| AHL receptor-like protein [uncultured bacterium] Length = 73 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 29/45 (64%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 CL W SEGKTS EIA ILGI+ TVN ++ + R T + R AI Sbjct: 29 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRXTGSMNRYQAI 73 >gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 218 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y +Y + ++ ELT REV+ L + +G ++ EIA L IS +T+ +++ +I Sbjct: 139 LLTYYKGKESTYSIEPAEEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNI 198 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 199 FRKIEVKNRTQATSWAKRN 217 >gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis M50/1] Length = 213 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +S G + EIA L IS TV N++++I +K R+ A +A+RNN+ Sbjct: 151 LTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQAAVFAIRNNL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 204 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W+++GKT+ EIA ILGI TV ++ ++ K + R+ A A A+ Sbjct: 145 LTPREAEILFWVAQGKTNPEIATILGIGLTTVKKHLEAVFVKLGVENRTSAAALAL 200 >gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 251 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R Sbjct: 187 DTPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQHAVALAFR 246 Query: 243 NNIV 246 + ++ Sbjct: 247 HGLI 250 >gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 306 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L WI+ GKT+ EIA IL +S TVN ++ I K + R+ A A+R Sbjct: 242 ELNLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVALR 301 >gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 222 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 102/213 (47%), Gaps = 25/213 (11%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 ++++Y+ S ++++ QE +V P +V +A+ E D + V + ++ Sbjct: 17 SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQ--- 71 Query: 111 PVFHTLP-----------ENITP-PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL--- 155 P+F LP E I G DN Y F++ + + + L + ++I Sbjct: 72 PIFRLLPVIFLTAHTSTEERIRGYQLGCDN-YLPKPFELEELGVVIRSLLERSQLIEAEW 130 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 R R+ E L+ + ++ K + H + LT RE + L ++EG ++ +I L +S Sbjct: 131 RSRINEP--LSNHTSSSHKRHHFHSFSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLS 188 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV Y++S++RKT + R+ + +A+ N+++ Sbjct: 189 SRTVEKYVSSLLRKTDSSNRAELVRFALENDLI 221 >gi|119717534|ref|YP_924499.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119538195|gb|ABL82812.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 512 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I+ G ++E+A LG+SR T +I I KT +RS A +A+RN + Sbjct: 447 LTQREVEVLVLIARGVATNEVAARLGVSRKTAATHIERIYAKTGACSRSTATLFALRNGL 506 Query: 246 V 246 + Sbjct: 507 L 507 >gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 254 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+AY+ + S D E T RE++CL W + GKT EIA I+G+S T+ ++ + Sbjct: 169 FLSAYKDAVLPSADPEM---VEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTN 225 Query: 224 IMRKTATKTRSGAIAYA 240 RK RS I A Sbjct: 226 ASRKLGVSGRSQTIRLA 242 >gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GKT+ E+A I+ +S TVN+Y+ RK + R +A A+R + Sbjct: 185 LSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGL 244 Query: 246 V 246 + Sbjct: 245 I 245 >gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4] gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H + +L+ R+ +CL+W+++GKTS +I +IL ISR+TV +I MR +R A Sbjct: 192 HPNEFIQLSPRQRQCLSWVAQGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAV 251 Query: 239 YA 240 A Sbjct: 252 IA 253 >gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74] Length = 147 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 84 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 143 Query: 243 NNIV 246 ++ Sbjct: 144 TGLI 147 >gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 230 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE CLTW++ GK+S IA +L IS+ TV+ +I + M K T++R+ A A R Sbjct: 167 HLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226 Query: 245 IV 246 ++ Sbjct: 227 LI 228 >gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13] Length = 210 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F S ++H ELT RE+E L I++GK++ EIA L I+ TV ++++I+ K Sbjct: 141 FGSTNLHE----ELTKRELEVLAEIAKGKSNKEIASSLFITEKTVKTHVSNILAKLEVAD 196 Query: 233 RSGAIAYAVRNNI 245 R+ A YAV++ I Sbjct: 197 RTQAALYAVKHGI 209 >gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ Y A + + D +D LT RE+E L I++G ++ EIA L IS TV +++ Sbjct: 138 LVGTYVARIRPAEDTS--RDIPLTPRELEVLRLIADGFSNSEIAAALQISPETVKTFVSR 195 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ YA R +V Sbjct: 196 ILTKLDLRDRVQAVVYAYRQGLV 218 >gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 257 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE E L+W+ GK+S +I+ IL IS TVN +I +I++K + R A+A A I Sbjct: 194 LSGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQNRPQAVAVATHLGI 253 Query: 246 V 246 + Sbjct: 254 L 254 >gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 YD+H L+ REVE +TW+ +GKT+ EI IL IS TV N++ I RK R Sbjct: 201 YDLHG-----LSEREVEIMTWVRKGKTNAEIGSILRISSYTVKNHLHQIFRKLDVYNRVQ 255 Query: 236 AIA 238 AI+ Sbjct: 256 AIS 258 >gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum] Length = 251 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R Sbjct: 187 DTPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFR 246 Query: 243 NNIV 246 + ++ Sbjct: 247 HGLI 250 >gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 243 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE+ECL W + GK+S EI IL + TVN + ++I RK +T +R AI A+ Sbjct: 180 VTHRELECLKWSASGKSSWEIGHILNCTEATVNFHFSNIRRKFSTTSRQQAIVKAI 235 >gi|217978159|ref|YP_002362306.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503535|gb|ACK50944.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 306 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L W++ GK++ +I+ IL IS TVN ++ I RK + R+ A AV+ Sbjct: 244 LTSREAEVLVWLAAGKSNRDISAILSISPRTVNKHLEQIFRKLGVENRAAAAVMAVQT 301 >gi|329114860|ref|ZP_08243616.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] gi|326695757|gb|EGE47442.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] Length = 299 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT RE E L WIS+GKT+ +IA IL IS TVN ++ K + R+ A A + Sbjct: 235 KRLNLTAREAEVLFWISKGKTNRDIAEILSISHRTVNKHLEQAYVKIGVENRASATARVL 294 Query: 242 R 242 + Sbjct: 295 Q 295 >gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 237 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 38/57 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L W ++GK+S +IA IL +S+NTV+ +I + ++K ++ A+ AV Sbjct: 175 HLTSREIEVLKWTADGKSSQDIADILTLSKNTVDFHIKNTVQKLNVPNKTAAVVQAV 231 >gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 186 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I RK K+RS A+ YAVRN Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181 Query: 245 IV 246 +V Sbjct: 182 LV 183 >gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC 11218] Length = 240 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE +CLTW +EGK++ EIA I+ S TV +IA+ +K R AI A+ Sbjct: 175 ELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAI 231 >gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168] gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168] Length = 240 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 175 APEMRFSKREKEILKWTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYA 234 Query: 241 VRNNIV 246 ++ Sbjct: 235 AATGLI 240 >gi|311067149|ref|YP_003972072.1| DNA-binding response regulator, luxR family protein [Bacillus atrophaeus 1942] gi|310867666|gb|ADP31141.1| DNA-binding response regulator, luxR family protein [Bacillus atrophaeus 1942] Length = 200 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E LT I+E KT+ EI+ L IS+ TV YI+SI++K +R GA+ ++ + Sbjct: 138 LTHKELEVLTLIAEDKTNMEISTELMISKRTVERYISSIIQKMKANSRVGAVVNGIKQGL 197 Query: 246 V 246 + Sbjct: 198 L 198 >gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] Length = 206 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ L+ RE+E L+W + GKTS EIA ILG+S+ TV+ +I K TR A+ A Sbjct: 140 QNVTLSEREIEALSWSARGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVEAVVRAA 199 Query: 242 RNNIV 246 + Sbjct: 200 TEGFI 204 >gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] Length = 240 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE +CLTW +EGK++ EIA I+ S TV +IA+ +K R AI A+ Sbjct: 175 ELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAI 231 >gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 40/65 (61%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 DV D LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K ++ A Sbjct: 168 DVAGYSDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAA 227 Query: 237 IAYAV 241 + A Sbjct: 228 VVRAA 232 >gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 312 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 249 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298 >gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 209 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG T+ EIA L +S TV ++ASI+RK R+ A YA+R+ + Sbjct: 148 LTEREREVLKLVAEGLTNAEIASRLTVSEETVKTHVASILRKLGLAHRTQAAIYALRHGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|110680752|ref|YP_683759.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] gi|109456868|gb|ABG33073.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] Length = 304 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 17/136 (12%) Query: 108 LFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 L PVF + L I P R+ F + + G P G ++L+ Sbjct: 180 LGGPVFKSWLDSCIQLPTSQTRRFSCEDFTLDFLGGG-----PSGELLLQ---------I 225 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A +NM S + F+LT RE E L W+S GKT+ +IA IL +S T+N ++ + + Sbjct: 226 ARTSNMRPS--TYLETAFDLTPREAEVLYWLSMGKTNRDIAQILSLSSRTINKHLEQVFQ 283 Query: 227 KTATKTRSGAIAYAVR 242 K R+ A A R Sbjct: 284 KMGVDNRTAAAVAADR 299 >gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 222 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK +T RE E L I++GK++ E+A + +S NTV +YI SI RK ++R+ A+ + Sbjct: 144 GKREGITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWG 203 Query: 241 V 241 V Sbjct: 204 V 204 >gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GKT+ E+A I+ +S TVN+Y+ RK + R +A A+R + Sbjct: 185 LSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGL 244 Query: 246 V 246 + Sbjct: 245 I 245 >gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 312 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 249 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298 >gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 248 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 40/65 (61%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 DV D LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K ++ A Sbjct: 178 DVAGYSDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAA 237 Query: 237 IAYAV 241 + A Sbjct: 238 VVRAA 242 >gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 186 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I RK K+RS A+ YAVRN Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181 Query: 245 IV 246 +V Sbjct: 182 LV 183 >gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] Length = 212 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 38/54 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R+ A+ Sbjct: 154 QLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 207 >gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E LT ++ GK++ EIA L I + TV Y++ I+ K +R+ A YAV++ Sbjct: 146 QLTEREAEVLTMLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806] gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 218 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF+LT RE E L ++ G ++ EI L +S T+ Y++S++RKT T R+ + +++ Sbjct: 154 DFKLTNREREVLEHLARGLSNSEIGQKLHLSSRTIEKYVSSLLRKTTTNNRAELVRFSLE 213 Query: 243 NNIV 246 + ++ Sbjct: 214 HRLI 217 >gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] Length = 216 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 47/83 (56%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L + + M + + G D L+ RE+E L + G ++ EIA L IS+ TV+ + A+ Sbjct: 131 VLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTVDKHRAN 190 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ KT K + + YAVR+ +V Sbjct: 191 ILEKTGCKNTASLVVYAVRHGLV 213 >gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Acinetobacter calcoaceticus PHEA-2] Length = 238 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W +EGKTS EIA ILG++ TVN ++ + M+K + A AV Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAV 233 >gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 215 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 234 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%) Query: 181 GKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G +F+ LT RE + L W ++GKT+ EI++IL IS +TVN ++ +I+ K T + A+A Sbjct: 167 GDEFDPTLTQRETDVLKWTADGKTAYEISLILSISESTVNFHVKNIVAKLGTANKVHAVA 226 Query: 239 YAV 241 A Sbjct: 227 KAA 229 >gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 312 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 249 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298 >gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5] gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5] Length = 215 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +M +D K ++LT RE + LT I+ GK++ EIA L IS TV ++++++ K Sbjct: 135 HMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 194 Query: 231 KTRSGAIAYAVRNNI 245 R+ A +AV+ N+ Sbjct: 195 ADRTQAALFAVKYNL 209 >gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] Length = 326 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 159 LWEIGLLA-AYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 L IGLLA +Q ++F +D W + L+ RE ECL W +EG T+ EIA L S Sbjct: 236 LARIGLLAHTFQEHVFPLFDEAWYHCRHVHLSPREQECLAWSAEGLTAKEIARKLHRSLA 295 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAV 241 TVN ++ + RK R A+ A+ Sbjct: 296 TVNLHLNNAARKLGASNRVQAVVRAM 321 >gi|297584895|ref|YP_003700675.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143352|gb|ADI00110.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 219 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE E L +I+ G T EI+ L IS TV+ Y +M K +K +S + YA+++N Sbjct: 154 ELSQREQEVLKYIALGYTQKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVRYALKHN 213 Query: 245 IV 246 I+ Sbjct: 214 II 215 >gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 206 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT ++ CLTW++ GKTS EIA ILG S TV+ +I M+ +R+ A YA I Sbjct: 144 LTPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQALNMCSRTAAAVYASVQGI 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] Length = 269 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L W + GKT+ E +ILG++ TV+ Y+ + K T++ A+A+AV+ Sbjct: 206 QLTKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVATKTQAVAFAVKER 265 Query: 245 IV 246 ++ Sbjct: 266 LI 267 >gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] Length = 215 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLQLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 206 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AY+ F DV ++ LT E+ L I++ KT++ I+ L ISR TV +++++I+ Sbjct: 124 GAYEGFAFFPNDVDEEENISLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTII 183 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 +K +R GA+ A++ I+ Sbjct: 184 KKLRVDSRVGAVVKAIKEGII 204 >gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 215 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+++L+ RE E L I+ G T+ EIA L IS TV +IA I K RS + YA+ Sbjct: 148 KNYDLSDREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYAM 207 Query: 242 RNNIV 246 RNNI+ Sbjct: 208 RNNII 212 >gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 238 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W +EGKTS EIA ILG++ TVN ++ + M+K + A AV Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAV 233 >gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf-5] gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 252 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W +EG TS EIA L S+ T+N ++ S M K + R A+ AV Sbjct: 189 DLTRRERECLKWAAEGMTSGEIAERLQRSQATINLHLTSAMHKLGARNRVQAVVRAVHYR 248 Query: 245 IV 246 ++ Sbjct: 249 LL 250 >gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 214 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 4/77 (5%) Query: 171 NMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 N +K +VH + ELT REV+ L + EG ++ EIA L IS +T+ +++ +I R Sbjct: 137 NYYKGKEVHHVVEPAIEVELTRREVQVLQMLKEGGSNMEIADSLFISEHTIKSHLYNIFR 196 Query: 227 KTATKTRSGAIAYAVRN 243 K K R+ A ++A RN Sbjct: 197 KIEVKNRTQATSWAKRN 213 >gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli] Length = 242 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECLTW++ GK+S EI I+ IS +TVN ++ + M K T +R A A Sbjct: 178 KLTSREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLG 237 Query: 245 IV 246 ++ Sbjct: 238 LI 239 >gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei] gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231 >gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231 >gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184] gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184] Length = 347 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 284 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 333 >gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231 >gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 234 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK +T RE E L I++GK++ E+A + +S NTV +YI SI RK ++R+ A+ + Sbjct: 156 GKREGITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWG 215 Query: 241 V 241 V Sbjct: 216 V 216 >gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp. subtilis str. 168] gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp. subtilis str. 168] gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp. subtilis str. SMY] gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yhcZ gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp. subtilis str. 168] Length = 214 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +M +D K ++LT RE + LT I+ GK++ EIA L IS TV ++++++ K Sbjct: 134 HMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 193 Query: 231 KTRSGAIAYAVRNNI 245 R+ A +AV+ N+ Sbjct: 194 ADRTQAALFAVKYNL 208 >gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] Length = 238 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 38/54 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R+ A+ Sbjct: 180 KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 233 >gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 234 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 171 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 229 >gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] Length = 238 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 38/54 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R+ A+ Sbjct: 180 KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 233 >gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 238 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE++ + W ++GKTS EIA +L IS +TVN Y+ + MRK R+ +A +R Sbjct: 177 LTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIR 233 >gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] Length = 234 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 171 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 229 >gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GKT+ E+A I+ +S TVN+Y+ RK + R +A A+R + Sbjct: 185 LSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGL 244 Query: 246 V 246 + Sbjct: 245 I 245 >gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto BEST195] Length = 215 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +M +D K ++LT RE + LT I+ GK++ EIA L IS TV ++++++ K Sbjct: 135 HMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 194 Query: 231 KTRSGAIAYAVRNNI 245 R+ A +AV+ N+ Sbjct: 195 ADRTQAALFAVKYNL 209 >gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis EO147] gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis C6786] Length = 230 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE CLTW++ GK+S IA +L IS+ TV+ +I + M K T++R+ A A R Sbjct: 167 HLTDREQICLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226 Query: 245 IV 246 ++ Sbjct: 227 LI 228 >gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 211 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 10/175 (5%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + + IV D+ L+ + +S + K ++ TE+ H E ++ R Sbjct: 45 ETMSDIVIVDYSMPLMNGLEVSRRLKALDL---RTEVLILTMHEDEELLSEAVLAGVRGF 101 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 D + I + GR L E LL YQ N H D LT RE Sbjct: 102 LFKSDAKKHLISAIEALLDGRPYFTSALVE-KLLHDYQLNK------HGRSDMLLTSREQ 154 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + I+EG T+ ++VIL +S TV + AS MRK + + + YA+R +V Sbjct: 155 SVVQLIAEGHTNRSMSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIRKKLV 209 >gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum CMR15] Length = 238 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 38/59 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K ++ A+ A Sbjct: 174 DDSLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAA 232 >gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A + A+ Sbjct: 159 FQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216 >gi|297538453|ref|YP_003674222.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera sp. 301] gi|297257800|gb|ADI29645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Methylotenera sp. 301] Length = 258 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 35/53 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE+E + WI GKT+ EIA IL IS+NTV +++ + +K R+ A+A Sbjct: 199 LSVRELEIIHWIKSGKTNQEIATILDISQNTVKSHLKRVFQKMNVTRRAQAVA 251 >gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 213 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+EC+ W + GKT EI+ IL +S+ TV Y+ + RK R IA A+R+ ++ Sbjct: 185 SAREIECMRWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244 >gi|170751882|ref|YP_001758142.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658404|gb|ACB27459.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A R+ Sbjct: 243 LPVTGREAEVLLWLSRGKSSRDIGEILGLSHRTVTKHLEGIYAKLGVENRTAASIIAARH 302 >gi|120403052|ref|YP_952881.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] gi|119955870|gb|ABM12875.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] Length = 521 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL E+ + A QA ++ H + LT RE+E L ++ G ++ EIA LGIS T Sbjct: 431 RLDEVAVEAVLQAAGHRARG-HSPRPGGLTPREIEVLCLVARGASNKEIAATLGISGKTA 489 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N++ K R GA +A+ + +V Sbjct: 490 RNHVERTYAKIGATNRIGASMFALNHGLV 518 >gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 305 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT RE E L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 240 RHFGLTAREAEVLLWIAKGKANRDIGDILGLSPRTVNKHLEQIYAKLGVENRASAAVRAA 299 Query: 242 R 242 + Sbjct: 300 Q 300 >gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT RE+E L I+ G ++ EIA L IS+ TV +++ I+ K + R A+ YA Sbjct: 154 RDIPLTPRELEVLRLIANGLSNSEIAATLVISQETVKTFVSRILAKLGLRDRVQAVVYAY 213 Query: 242 RNNIV 246 R +V Sbjct: 214 RQGLV 218 >gi|284045352|ref|YP_003395692.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949573|gb|ADB52317.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 592 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 12/100 (12%) Query: 159 LWE---IGLLAAYQANMFKSYDVHWGKD---------FELTGREVECLTWISEGKTSDEI 206 LWE +GLL + + WG++ F LT RE+ LT ++ G ++ EI Sbjct: 58 LWESPRLGLLQVWIEPVRVPSGDEWGRELTAAPARNEFGLTRRELHVLTLLAGGSSNGEI 117 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A LG + T+ ++A ++ K +RSGA A AV ++ Sbjct: 118 AAQLGTAPRTIGAHVARLLEKLDQSSRSGAAAVAVERGLL 157 >gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 254 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+++CL I+ GKT E+ ILG+S +T++ Y+ + R+ KTRS + A R+ Sbjct: 188 LTPRQIDCLRLIAAGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGY 247 Query: 246 V 246 V Sbjct: 248 V 248 >gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] Length = 295 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE E L W+S GKTS EI++IL +S TVN ++ I +K R+ A A ++R Sbjct: 233 LPITKRESEVLYWVSYGKTSWEISLILEMSPRTVNKHLEQIYKKLGVDNRTSAAAISIR 291 >gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 201 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 164 LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ Q + + H +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ Sbjct: 116 LISIVQTRLARRPRTHTAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K TR A+ A + I+ Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199 >gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A + A+ Sbjct: 159 FQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216 >gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 236 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231 >gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] Length = 194 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 131 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 189 >gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297] gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297] Length = 240 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+ECLTW +EGK+S EI+ ILG S T ++++ K R AI+ A+ Sbjct: 175 KLTKREIECLTWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCG 234 Query: 245 IV 246 I+ Sbjct: 235 II 236 >gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K A + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|159897476|ref|YP_001543723.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890515|gb|ABX03595.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 799 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E LT I++GK++ EIA+ L +S TVNN++ +I RK TRS A AY R Sbjct: 732 LTKREHELLTLIAQGKSNSEIALELVLSPFTVNNHLRAIYRKLGVSTRSAA-AYIAR 787 >gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 212 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L ++EGKT+ EI L I+ TV ++++I+ K + R+ A+ YA +++ Sbjct: 146 ELTNREMEILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQDRTQAVIYAFQHS 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 237 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL A + V + LT RE E LT ++EG ++ EIA L +S TV +++ Sbjct: 142 LLEALAGGRPEPVPVAPQRPAGLTAREAEVLTLVAEGLSNAEIARRLVVSEGTVKSHMNH 201 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R+ A+A+A RN +V Sbjct: 202 LLAKIDARDRAQAVAFAYRNGLV 224 >gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE E L I+ G+ S EI LGI+R TV +Y+ SI K +R+ A+A A+ Sbjct: 155 NVQLTEREQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIE 214 Query: 243 NNIV 246 ++ Sbjct: 215 RGLL 218 >gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 213 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 241 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE ECL W + GK S +IA IL +S TV +Y+ + +K +T S A+A A R I Sbjct: 179 LAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRI 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 222 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A + A+ Sbjct: 159 FQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216 >gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] Length = 213 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 208 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 7/76 (9%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QA +S D LT RE E L ++EG T+ EIA L + TV ++ASI+RK Sbjct: 138 QAQTMRSSDA-------LTEREGEVLKLLAEGLTNAEIAARLSVGEETVKTHVASILRKL 190 Query: 229 ATKTRSGAIAYAVRNN 244 R+ A YA+R+ Sbjct: 191 GLAHRTQAAIYALRHG 206 >gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 213 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 213 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I +K K+RS A+ YAVRN Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 216 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV +I I +K K+RS A+ YAVRN Sbjct: 152 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 211 Query: 245 IV 246 +V Sbjct: 212 LV 213 >gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 236 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L ++ G + EIA LGIS NTV N++ +I+ K +R A+ YAVR I Sbjct: 173 LSPRELDVLRLLARGMANREIAGSLGISENTVKNHVRNILEKLQLHSRMEAVVYAVREKI 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 386 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELTGREVE L + G ++ ++A LGIS TV ++++++RKT +R+ A +AVR Sbjct: 308 ELTGREVEVLDCLVAGMSNKQVARALGISVRTVTVHVSNLLRKTGAASRTEAALWAVRQR 367 Query: 245 I 245 + Sbjct: 368 L 368 >gi|149375695|ref|ZP_01893464.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] gi|149360097|gb|EDM48552.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] Length = 301 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LTGRE + L WI+ GKT+ EI IL +S TVN ++ + RK + R+ A A A++ Sbjct: 238 FSLTGRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKLGVENRTSAAAAAIK 296 >gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 234 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L W ++GKT+ EI+ IL IS +TVN ++ +IM K T + A+A A Sbjct: 174 LTSRETDVLKWTADGKTAYEISRILSISESTVNFHVKNIMSKLGTSNKIQAVAKAA 229 >gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 200 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +H G + LT RE+E L I +G + ++A ILGI+ TVN +I+++++K R+ A+ Sbjct: 131 MHLGGE-HLTVRELEVLALIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAM 189 Query: 238 AYAVRNN 244 A AVR Sbjct: 190 AIAVRRG 196 >gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 210 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + M K + H +LT RE+E L ++EGK + EIA L I+ TV ++++I+ K Sbjct: 135 SQMRKKQEAHLHD--QLTEREMEVLKLMTEGKANQEIADELYIALKTVKVHVSNILNKLE 192 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A+ YA +NN++ Sbjct: 193 VHDRTQAVIYAFKNNLI 209 >gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] Length = 210 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EG ++ EIA L +S TV N++ +I RK K R+ A Y ++NN Sbjct: 144 DLTDREFEILNLIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203 >gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 243 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE +CL WIS+GKT +IA +LG+S V ++ + R A T A+A A R + Sbjct: 182 LTQRERQCLAWISDGKTMQDIAELLGVSPRGVKFHLDNARRNLAALTLPHAVALAFRQGL 241 Query: 246 V 246 + Sbjct: 242 L 242 >gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 243 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 169 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 228 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 229 SAAASRAVQLRII 241 >gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 184 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + +G ++ EIA L IS TV ++ I RK K+RS A+ YAVRN Sbjct: 120 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHVNKIFRKLNVKSRSQAVIYAVRNQ 179 Query: 245 IV 246 +V Sbjct: 180 LV 181 >gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 511 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +I++G + EI+ L +S TV+ Y+ +I+R+ RS A+A A+R NI Sbjct: 450 LTPREQQILQFIADGLDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMRQNI 509 Query: 246 V 246 + Sbjct: 510 I 510 >gi|171057768|ref|YP_001790117.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775213|gb|ACB33352.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 316 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT RE E L W+++GKT+ +I ILG S TV ++ + K +TR+ A A A+ Sbjct: 251 FRLTPREAEVLYWLAKGKTNRDIGEILGSSAATVKKHLEHVYEKLGVETRNAAAAVAI 308 >gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 220 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++S G ++ EIA L IS +TV N+I +I+ K R A AYA+R I Sbjct: 151 LTSRELEVLGYLSTGASNREIAKQLFISEHTVRNHIQNILGKLHLTNRVQAAAYAIRQGI 210 >gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 167 YELHGENDPVPSLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 227 SAAASRAVQLRII 239 >gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 241 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 167 YELHGENDPVPSLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 227 SAAASRAVQLRII 239 >gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GREVE L +++G+++ EI L +S TV ++++ I RK T R+ +A A+R Sbjct: 159 ELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAG 218 Query: 245 IV 246 ++ Sbjct: 219 VI 220 >gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440] Length = 220 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L I++G ++ EIA L IS+ TV Y++ I+ K + R A+ YA R Sbjct: 155 DIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYR 214 Query: 243 NNIV 246 + +V Sbjct: 215 SGLV 218 >gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 251 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ + Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGL 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE E L I+ G+ S EI LGI+R TV +Y+ SI K +R+ A+A A+ Sbjct: 155 NVQLTEREQEVLAGIATGERSKEIGARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIE 214 Query: 243 NNIV 246 ++ Sbjct: 215 RGLL 218 >gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 208 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L I++GKT+ EIA L IS TV ++++I+ K + R+ A+ YA ++ Sbjct: 146 QLTSREMEVLLLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLDVQDRTQAVIYAFKHG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] Length = 210 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 147 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 205 >gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 92 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D D L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 1 MSSVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60 Query: 233 RSGAIAYAVRN 243 R + +A+ N Sbjct: 61 RVALLNWAMDN 71 >gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 248 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+ECL W EGKT+ EI+ I+ +S TV ++ + K R A+A A++ Sbjct: 183 ELTKRELECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVALAIKKG 242 Query: 245 IV 246 I+ Sbjct: 243 II 244 >gi|332560426|ref|ZP_08414744.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N] gi|332274224|gb|EGJ19540.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N] Length = 105 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 38/54 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R+ A+ Sbjct: 47 KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 100 >gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 253 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L I+ G ++ EIA L IS TV N+I+SI+RK + R+ A+ +A+R Sbjct: 173 LSEREIEVLERIAAGGSNKEIADSLSISTQTVKNHISSILRKLSLNDRTQAVLFALR 229 >gi|258652794|ref|YP_003201950.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556019|gb|ACV78961.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 562 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G T+ ++A L IS TV ++A++ RK TR+ A+A+A RN + Sbjct: 495 LTARETEILALVARGDTNRQVAQALVISEKTVARHLANVHRKLGVSTRTAAVAWARRNGL 554 >gi|302522670|ref|ZP_07275012.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] gi|318057801|ref|ZP_07976524.1| response regulator [Streptomyces sp. SA3_actG] gi|302431565|gb|EFL03381.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] Length = 290 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++EG T+ +A LG+ TV Y+ + MRK +TR A+A A R + Sbjct: 229 LTPREVEVLVIVAEGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGV 288 Query: 246 V 246 V Sbjct: 289 V 289 >gi|116250894|ref|YP_766732.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255542|emb|CAK06619.1| putative GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 159 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + W++ GKT+ EI ILGIS TVN +IA+ + + +A A+RN I Sbjct: 98 VTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNGI 157 Query: 246 V 246 + Sbjct: 158 I 158 >gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 292 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QAN+ + V+ GKD +L+ RE + L ++ G +S EI L IS T N +I +I RK Sbjct: 216 QANV-EPLPVNQGKDNKLSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKL 274 Query: 229 ATKTRSGAIAYAVRNNI 245 + R+ A+++A + + Sbjct: 275 NVRNRAQAVSFAANHGL 291 >gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4] gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4] Length = 220 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ R+++ L ++EG+T+ EIA+ILGIS TV ++++I R TR+GA+ + + Sbjct: 146 LSQRQLDVLHLLAEGRTNKEIAIILGISPFTVRIHVSAIFRALGVATRAGAVTKGIAMGL 205 Query: 246 V 246 V Sbjct: 206 V 206 >gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 163 GLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 G +A +MF + G D+ LT RE + L + +G+T EIA L +S +TV+ ++ Sbjct: 132 GRIARRVLDMFARFAPTRGDGDYGLTTRETQILEAMVKGRTKKEIAAQLDLSFHTVDTHL 191 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +I +K TR+GA+A A++ +V Sbjct: 192 RNIYQKLEVNTRTGAVAKALKEKLV 216 >gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 13/153 (8%) Query: 96 DKYYNVLQRPTELFCPVF-HTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 D N P EL + H +P + P +D R F R +G + + Sbjct: 99 DDTVNGQAFPAELRALMLRHAIPAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIV 158 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 IL L AY A + H L+ RE+E + W ++GKTS EI IL +S Sbjct: 159 ILHT-------LDAYNAVRRNEENAHSA----LSARELEVVRWTAQGKTSIEIGQILTLS 207 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TVN Y+ + ++K R+ +A A+R ++ Sbjct: 208 DHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|333023628|ref|ZP_08451692.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332743480|gb|EGJ73921.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 290 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++EG T+ +A LG+ TV Y+ + MRK +TR A+A A R + Sbjct: 229 LTPREVEVLVIVAEGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGV 288 Query: 246 V 246 V Sbjct: 289 V 289 >gi|331657961|ref|ZP_08358923.1| regulatory protein SdiA [Escherichia coli TA206] gi|331056209|gb|EGI28218.1| regulatory protein SdiA [Escherichia coli TA206] Length = 87 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 24 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 83 Query: 243 NNIV 246 ++ Sbjct: 84 TGLI 87 >gi|316935504|ref|YP_004110486.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603218|gb|ADU45753.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 309 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +F LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 240 QFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 232 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E LT ++ GK + EIA L I + TV Y++ I+ K +R+ A YAV++ Sbjct: 149 QLTERETEVLTMLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSG 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|303238745|ref|ZP_07325277.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593624|gb|EFL63340.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+ + I +GK++ EIA+ + I+ +V N I +I+ K K R+ +AV+ Sbjct: 153 DINLTDRELSIIKLIVDGKSNKEIALSIFITEGSVKNIITNILEKLNLKDRTQLAVFAVK 212 Query: 243 NNIV 246 NNIV Sbjct: 213 NNIV 216 >gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 245 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE+E L +++G TS EI L IS +TV+ YI I R+ + K R +A A R+ Sbjct: 182 LELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRH 241 Query: 244 NIV 246 ++ Sbjct: 242 GLL 244 >gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 215 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|238782956|ref|ZP_04626984.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] gi|238716159|gb|EEQ08143.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] Length = 244 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 21/138 (15%) Query: 112 VFHTLPENITPPAGMDNRYC------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 V H N+T + M ++ C + D A I++ LML+ K L Sbjct: 112 VLHDQYYNLTILSLMTDKDCDEDIEDKIANDKANIQMLLMLIHEK--------------L 157 Query: 166 AAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ ++ +S D G++ T RE E + W S GK+ EIA+ILGI TV +++ + Sbjct: 158 TSFYNDLNRSSDFCKMGRNEIFTKRENEIIYWASVGKSYPEIALILGIKPTTVKHHMGKV 217 Query: 225 MRKTATKTRSGAIAYAVR 242 +RK AI+ AV Sbjct: 218 VRKLGVTNAKHAISLAVE 235 >gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 243 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R + Sbjct: 182 LSARELEVVRWTAQGKTSVEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKL 241 Query: 246 V 246 + Sbjct: 242 I 242 >gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT R E L W+++GKT+ +IA ILGIS +TV ++ I K +TRS A A+ Sbjct: 145 LTPRAAETLLWVAQGKTNLDIATILGISESTVKKHLLEIFDKLNIETRSAATLRAL 200 >gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] Length = 210 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 147 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 205 >gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 215 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|311742180|ref|ZP_07715990.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314673|gb|EFQ84580.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 899 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W+S G ++ +IA LGIS TV+ ++++++RK +R+ A A R Sbjct: 836 DPHLTPRESEVLRWVSTGASNRQIARTLGISEGTVSVHVSNLLRKLGVGSRTEAAVRAAR 895 >gi|289165158|ref|YP_003455296.1| transcriptional regulator [Legionella longbeachae NSW150] gi|288858331|emb|CBJ12199.1| putative transcriptional regulator [Legionella longbeachae NSW150] Length = 282 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL RE ECL W GK++ E + ILG+ R TV NY+ + K + AI A+++ Sbjct: 220 ELKDRERECLFWARYGKSTSETSEILGLKRATVKNYLEGVREKFHVSSVQEAITLALQHQ 279 Query: 245 IV 246 I+ Sbjct: 280 II 281 >gi|192289851|ref|YP_001990456.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283600|gb|ACE99980.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 308 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +F LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 240 QFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|39934323|ref|NP_946599.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39648171|emb|CAE26691.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 308 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +F LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 240 QFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|11465809|ref|NP_053953.1| ORF29 [Porphyra purpurea] gi|1723332|sp|P51343|YCF29_PORPU RecName: Full=Probable transcriptional regulator ycf29 gi|1276809|gb|AAC08229.1| hypothetical chloroplast ORF 29 [Porphyra purpurea] Length = 209 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L + +G T+ EIAVIL S V Y++ +++KT T+ R+ + Y+++NN+ Sbjct: 146 LTPREKSILNLVIDGLTNKEIAVILDTSIRNVEKYVSRLLQKTNTRNRTLLVKYSIKNNL 205 Query: 246 V 246 + Sbjct: 206 L 206 >gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 225 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGREVE LT ++ G + EIA L +S+ TV ++ASI K +R+ AI +A++ + Sbjct: 154 LTGREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLASIFSKLKVGSRTEAILFALKEGM 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 173 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + YA Sbjct: 110 EMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKIQIACYAAA 169 Query: 243 NNIV 246 ++ Sbjct: 170 TGLI 173 >gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E LT ++ GK + EIA L I + TV Y++ I+ K +R+ A YAV++ Sbjct: 146 QLTERETEVLTMLARGKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 188 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT REVE L +++G + IA LGIS +TV ++ SI+ K +R+ A+A A Sbjct: 122 EEVPLTQREVEVLALMADGLPNKAIAARLGISEHTVKFHVGSILAKLGASSRAEAVAIAA 181 Query: 242 RNNIV 246 R ++ Sbjct: 182 RKGLL 186 >gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)] gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24] gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24] gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)] gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)] gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24] Length = 217 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++GKT+ E+A L +S TV +++ I+RK TR+ A+A A + Sbjct: 145 ELTPRETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRILRKLGAATRAQAVAIAYESG 204 Query: 245 IV 246 ++ Sbjct: 205 LL 206 >gi|134094678|ref|YP_001099753.1| putative two-component response regulator protein [Herminiimonas arsenicoxydans] gi|133738581|emb|CAL61626.1| Two-component response regulator, LuxR family [Herminiimonas arsenicoxydans] Length = 315 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L+W+++GKT+ +I IL +S TV+ ++ I K +TRS A+A A Sbjct: 244 LTPRETEVLSWLAKGKTNRDIGDILQLSPRTVSKHLEHIFEKLGVETRSAAVAMA 298 >gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L] gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W] gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L] gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W] gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|302526791|ref|ZP_07279133.1| predicted protein [Streptomyces sp. AA4] gi|302435686|gb|EFL07502.1| predicted protein [Streptomyces sp. AA4] Length = 71 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L RE+ L ++EG ++ EIA LG S +TV N + +M + + R+ A AYAVRN Sbjct: 10 QLGERELRVLRLVAEGYSNSEIAAELGWSEHTVKNALYDLMARLGVRNRAHAAAYAVRNG 69 Query: 245 IV 246 ++ Sbjct: 70 LI 71 >gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] Length = 225 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G ++ EIA L +S TV N++ +I RK R+ A+ YA+R+ I Sbjct: 161 LTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVTDRTQALIYAIRHKI 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium leguminosarum] Length = 241 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 167 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 227 SAAASRAVQLRII 239 >gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans] gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 237 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ REVE L W EGKTS EIA IL I+ TVN +I+ M K ++ A+ A Sbjct: 175 QLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAA 231 >gi|325066389|ref|ZP_08125062.1| two component LuxR family transcriptional regulator [Actinomyces oris K20] Length = 234 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIG-------LLAAYQANMFKSYD 177 ++ SL + + G ++L P I+ D RLW G + A S Sbjct: 109 EDGASSLAGAIHQAVAGNLVLSPTSSAIISDQARLWASGSSRPSESIPVPTHAQQPPSPL 168 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H L+ RE E LT + + KT+ +IA L +S TV ++++I+ K + R GA Sbjct: 169 PHG---VTLSEREREVLTLVVDAKTNKQIATRLRVSEATVKTHVSAIIAKLGVQDRVGAA 225 Query: 238 AYAVRNNIV 246 YA+++N+V Sbjct: 226 VYALQHNLV 234 >gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] Length = 222 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 19/210 (9%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 ++++Y+ S + ++ QE +V P +V +A+ E D + V +P Sbjct: 17 SISDYLEMSGYFVISATNGQEAL--QLVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74 Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL---RDR 158 PV HT E G DN Y F++ + + + L + ++I R R Sbjct: 75 RLLPVIFLTAHTSTEERIRGYQLGCDN-YLPKPFELEELGVVIRSLLERSQLIEAEWRSR 133 Query: 159 LWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + E L+ + ++ K + H + LT RE + L ++EG ++ +I L +S T Sbjct: 134 INEP--LSNHTSSSHKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLSSRT 191 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V Y++S++RKT + R+ + +A+ N+++ Sbjct: 192 VEKYVSSLLRKTDSSNRAELVRFALENDLI 221 >gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT RE+E L I++G ++ EIA L IS+ TV +++ I+ K + R A+ YA Sbjct: 155 RDLPLTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKLGLRDRVQAVVYAY 214 Query: 242 RNNI 245 R + Sbjct: 215 RRGL 218 >gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 217 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L ISEG T+ EIA L +S+ TV + +++ KT K + I YAV+ Sbjct: 154 EIELSDRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALIKYAVK 213 Query: 243 NNIV 246 N ++ Sbjct: 214 NGLI 217 >gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 186 YELHGENDPVPTLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 245 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 246 SAAASRAVQLRII 258 >gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense] Length = 272 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 198 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 257 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 258 SAAASRAVQLRII 270 >gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QA +S ++H LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 QAEKQESSNIHVDV---LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKL 197 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A YAV+N +V Sbjct: 198 NLSDRTQAALYAVKNGVV 215 >gi|218677979|ref|ZP_03525876.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 121 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 47 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 106 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 107 SAAASRAVQLRII 119 >gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 226 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REVE L WI++GKT+ EIA ILG++ TV +IA + +K R+ R I Sbjct: 164 LPRREVEILHWIAKGKTNAEIAAILGVAAPTVATHIARMFQKLDVNDRAALAVKGFRYGI 223 Query: 246 V 246 + Sbjct: 224 I 224 >gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 272 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L W+ GK++ EIA IL IS TV N++ +I+RK + RS A A A R + Sbjct: 210 ITPREKEILQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGL 269 Query: 246 V 246 + Sbjct: 270 I 270 >gi|325293769|ref|YP_004279633.1| two-component response regulator protein [Agrobacterium sp. H13-3] gi|325061622|gb|ADY65313.1| putative two-component response regulator protein [Agrobacterium sp. H13-3] Length = 309 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 177 DVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D H KD F LT RE E L WI++GK++ +I ILG+S TVN ++ I K + R+ Sbjct: 238 DDHLLKDHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENRAS 297 Query: 236 AIAYAV 241 A A Sbjct: 298 AAVKAA 303 >gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99] gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA Sbjct: 178 LDLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAA 235 >gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E LT ++EG + EI L IS TV N++++I +K R+ A YA ++N Sbjct: 161 ELTRREYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYKHN 220 Query: 245 I 245 I Sbjct: 221 I 221 >gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 242 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 6/137 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + T D SL + + G + PK G++I + R L E G + Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRTVAEGNAFIHPKVTGKLIQQLRRMEYLSETGAI 159 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A A G D LT RE E L ++EG+++ I L IS TV N+++SI+ Sbjct: 160 AEDTAIREAGVKFVAGDDNPLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSIL 219 Query: 226 RKTATKTRSGAIAYAVR 242 +K R+ A+ A++ Sbjct: 220 QKMDVDDRTQAVINAIK 236 >gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 199 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT E+ L ISE KT+ EI+ +L ISR TV ++++SI+RK +R GA+ A++ Sbjct: 138 LTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRVGAVVKAMK 194 >gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T Sbjct: 167 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226 Query: 234 SGAIAYAVRNNIV 246 S A + AV+ I+ Sbjct: 227 SAAASRAVQLRII 239 >gi|209548302|ref|YP_002280219.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534058|gb|ACI53993.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 70 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + W++ GKT+ EI IL IS TVN +IA+ + + +A A+RN I Sbjct: 9 VTPRETEIIGWMAAGKTAAEIGTILAISHITVNTHIANAKARLGVFKDTALVAAALRNGI 68 Query: 246 V 246 + Sbjct: 69 I 69 >gi|85706509|ref|ZP_01037602.1| two-component response regulator [Roseovarius sp. 217] gi|85668921|gb|EAQ23789.1| two-component response regulator [Roseovarius sp. 217] Length = 232 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF LT RE E +T + G +IA L I+R TV ++A+ ++KT K+R A+ +A+ Sbjct: 161 DFGLTRREAEIMTMLGGGAPVSDIADALDITRQTVRVHLANAIKKTGLKSREAAVRFAME 220 Query: 243 N 243 N Sbjct: 221 N 221 >gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1] gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1] Length = 245 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 11/131 (8%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYD------- 177 ++R+ L ++ +I G L P R++ RL + G +A A+ + Sbjct: 115 EDRFEVLVEELQKIVRGQPPLSPAIARRLLSHFRLGDSGSMALDSAHAPGDFQPARPAAP 174 Query: 178 -VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V+ D E LT RE E LT++S+G T EIA ++GI TVN++I +I RK +R+ Sbjct: 175 AVYAEPDHERLTPRETEVLTYLSKGFTIKEIAGLMGIKWFTVNDHIKAIYRKLNVSSRAE 234 Query: 236 AIAYAVRNNIV 246 A A + +V Sbjct: 235 AAVLASKQGLV 245 >gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K++E LT RE E L I++GK + EI L IS TV+ ++ +I RK +TR+ A+ YA Sbjct: 189 KNYEPLTEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRKMQVRTRAQAVRYA 248 Query: 241 VRNNIV 246 V I+ Sbjct: 249 VLKGII 254 >gi|91786468|ref|YP_547420.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91695693|gb|ABE42522.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 297 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 32/48 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L+W+++GKT+ +I ILG+S TVN ++ I K +TR Sbjct: 238 LTPRETEVLSWLAKGKTNKDIGDILGMSHRTVNKHLEHIFEKLGVETR 285 >gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 215 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 219 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ Y A + + D + LT RE+E L I++G ++ EIA L IS+ TV Y++ Sbjct: 138 LVGRYAARIRPAED--SSSEIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSR 195 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ YA R+ +V Sbjct: 196 ILTKLDLRDRVQAVVYAYRSGLV 218 >gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911] gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 41/61 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L ++EGKT+ EIA L I+ TV ++++I+ K + R+ A+ YA +++ Sbjct: 148 ELTSREMEILLLMTEGKTNQEIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHS 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] Length = 238 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W +EGKTS EIA ILG++ TVN ++ + M+K + A AV Sbjct: 178 LTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAV 233 >gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] Length = 215 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|327439935|dbj|BAK16300.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 159 LWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L E L ++ M ++ + + +L+ RE E + ++ G +S +IA +L IS T+ Sbjct: 143 LMEANLFSSQVGEMLFNHPCYVENNEIKLSKREFEVMKCVAFGYSSKQIAHLLEISETTI 202 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 YI S+M KT T R+ A+A+ + I+ Sbjct: 203 KQYIKSVMSKTNTSNRTHAVAFLFQKRIL 231 >gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1] gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1] gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1] Length = 238 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W +EGKTS EIA ILG++ TVN ++ + M+K + A AV Sbjct: 178 LTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAV 233 >gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 215 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] Length = 215 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 237 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231 >gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58] gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58] Length = 208 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/38 (57%), Positives = 28/38 (73%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LT REVECL W + GKT++EI +ILG+ R TV +I S Sbjct: 144 LTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRS 181 >gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] Length = 215 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 260 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 191 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 250 Query: 246 V 246 + Sbjct: 251 I 251 >gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] Length = 240 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGI 212 +L+DR E LA + K +H LT RE+ECL W+S G + E+A L I Sbjct: 147 VLQDREAEFHFLANFLHLRMKDVALHAHSSAPVLTRRELECLKWLSAGLRTAELADKLAI 206 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAV 241 S TV +I + K + KTR A+A AV Sbjct: 207 SGPTVEFHIKNAREKLSAKTREQAVARAV 235 >gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 214 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 154 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H D LT RE E L ++EG++S +IA IL IS TV + A+++RK + R Sbjct: 150 HETPDQILTAREEEVLKLVAEGRSSKDIAEILFISVKTVQRHRANLLRKLGLRDRLDLTR 209 Query: 239 YAVRNNIV 246 YA+R ++ Sbjct: 210 YAIRAGLI 217 >gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 309 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +F LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 240 EFATEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 250 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L W SEGK+S EI +I I+ TV ++ +I +K + R+ AI A+R Sbjct: 189 ELTKREREILAWSSEGKSSWEIGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRQG 248 Query: 245 IV 246 ++ Sbjct: 249 LI 250 >gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] Length = 215 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 241 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 180 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 235 >gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 224 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE + L I+ G T+ EIA LG+S NTV NY+ SI+ K + R A A+A+ N Sbjct: 157 LSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRVQAAAWALNN 214 >gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans] Length = 214 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ REVE L W EGKTS EIA IL I+ TVN +I+ M K ++ A+ A Sbjct: 152 QLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAA 208 >gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 242 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L W ++GK++D+IA ILG++RNTV ++ +I K + AI A+R Sbjct: 180 LTARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRRQ 238 >gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 210 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +++GKT+ EIA L I+ TV ++++I+ K + R+ A+ YA +++ Sbjct: 148 ELTNREMEVLLLMAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAFKHS 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 215 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E LT +++GKT+ EIA L +S T+ +++ I K R+ A YA++NN Sbjct: 146 KLSKRESEVLTEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVTDRTQAAIYAMQNN 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426] gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 500 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++EG ++ E A L +S TV +Y+++I++K K R+ AI A+R+ I Sbjct: 440 LSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDGI 499 Query: 246 V 246 + Sbjct: 500 I 500 >gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 248 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIAV LG+S +TVN Y+ S K + R AIA A+R Sbjct: 187 LSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243 >gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] Length = 245 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 15/119 (12%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKD 183 D+ Y + +V + +I ++L+ + +L YQ N+ ++ + V G++ Sbjct: 132 DSIYFDESIEVNKEKIQMLLILTHDK-----------MLGLYQKNINENNELGKVPNGRE 180 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+ILGI R+TV +I +++RK AI + Sbjct: 181 I-FSPRENEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIE 238 >gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 268 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 169 QANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Q F+ + G D +T RE+E L+W +EGKT ++I+V++ IS+ TV ++ S K Sbjct: 189 QQRAFEMHHQDEGIDINTITKREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYK 248 Query: 228 TATKTRSGAIAYAVRNNIV 246 R A+A A+R ++ Sbjct: 249 LGALNRIHAVAKAIRAGLI 267 >gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 215 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 242 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L W ++GK++D+IA ILG++RNTV ++ +I K + AI A+R Sbjct: 180 LTARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRRQ 238 >gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1710b] gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 237 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231 >gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 251 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIAV LG+S +TVN Y+ S K + R AIA A+R Sbjct: 190 LSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 246 >gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] Length = 260 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 191 LTPREVDCLRWAANGKTDGEIAEILNIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 250 Query: 246 V 246 + Sbjct: 251 I 251 >gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I+ G+++ EIA L ++ TV ++++++ K + R+ A YAVRN + Sbjct: 152 LTDREREVLTLIASGRSNREIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211 >gi|218675092|ref|ZP_03524761.1| LuxR family transcriptional regulator [Rhizobium etli GR56] Length = 81 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + W++ GKT+ EI IL IS TVN +IA+ K + +A A+RN I Sbjct: 20 VTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGVFKETALVAAALRNGI 79 Query: 246 V 246 + Sbjct: 80 I 80 >gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei SAVP1] gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 668] gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1106a] gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 241 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 180 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 235 >gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] Length = 268 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 199 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 258 Query: 246 V 246 + Sbjct: 259 I 259 >gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] Length = 268 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 199 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 258 Query: 246 V 246 + Sbjct: 259 I 259 >gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14] gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112] gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] Length = 237 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231 >gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L I++G +D+IA L IS TV ++ I++K + R+ A+A A+R+ Sbjct: 166 ELTDRELDVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQAVAKALRHK 225 Query: 245 IV 246 IV Sbjct: 226 IV 227 >gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 201 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 164 LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ Q + + H +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ Sbjct: 116 LISIVQTRLARRPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K TR A+ A I+ Sbjct: 176 NAREKLGVATRIEAVVRASSAGII 199 >gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] Length = 215 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|300088572|ref|YP_003759094.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528305|gb|ADJ26773.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 220 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E LT I+ GK + EIA L I TV N+I I K K+R AI+Y +R N Sbjct: 159 LTAREIEILTLIAAGKGNREIAETLFIEEKTVKNHINVIYSKLRIKSRYEAISYMLRQN 217 >gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 198 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ + Sbjct: 137 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGL 196 Query: 246 V 246 + Sbjct: 197 I 197 >gi|258541258|ref|YP_003186691.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632336|dbj|BAH98311.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01] gi|256635393|dbj|BAI01362.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-03] gi|256638448|dbj|BAI04410.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-07] gi|256641502|dbj|BAI07457.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-22] gi|256644557|dbj|BAI10505.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-26] gi|256647612|dbj|BAI13553.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-32] gi|256650665|dbj|BAI16599.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653656|dbj|BAI19583.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-12] Length = 299 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 K LT RE E L WI++GKT+ +IA IL IS TVN ++ K + R+ A A Sbjct: 235 KRLNLTAREAEVLFWIAKGKTNRDIAEILSISHRTVNKHLEQSYIKIGVENRAAATA 291 >gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 237 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231 >gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8] gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8] Length = 499 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ +LT RE E L + +G T EIA L +SRNTV N++A++ K RS AI +A Sbjct: 422 GELADLTPREREILGLMCQGHTDAEIAASLHLSRNTVRNHVAALYSKLDVHRRSAAIIWA 481 Query: 241 VRNNIV 246 + IV Sbjct: 482 RQRGIV 487 >gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 303 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F +T RE + W+++GKT+ EIA I+ IS TVN ++ + +K A R+ A A A+ Sbjct: 236 EQFGITKRESDVFLWLAKGKTNREIAQIIDISPRTVNKHLEQLFKKLAVDNRTTAAAMAI 295 Query: 242 R 242 + Sbjct: 296 Q 296 >gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei] Length = 241 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 180 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 235 >gi|327189418|gb|EGE56584.1| LuxR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 65 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + W++ GKT+ EI IL IS TVN +IA+ K + +A A+RN I Sbjct: 4 VTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGVFKETALVAEALRNGI 63 Query: 246 V 246 + Sbjct: 64 I 64 >gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840] Length = 268 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 199 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 258 Query: 246 V 246 + Sbjct: 259 I 259 >gi|332528409|ref|ZP_08404401.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332042088|gb|EGI78422.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 312 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 33/49 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E L+W+++GKT+ +I ILG+S TVN ++ I K +TR+ Sbjct: 251 LTPRETEVLSWLAKGKTNRDIGDILGMSPRTVNKHLEHIFEKLGVETRT 299 >gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 265 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/38 (57%), Positives = 28/38 (73%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LT REVECL W + GKT++EI +ILG+ R TV +I S Sbjct: 201 LTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRS 238 >gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103] gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103] gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis AJ13355] Length = 240 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G DF + RE+E L W +EGKTS EI++IL IS +TVN Y ++ ++ ++ YA Sbjct: 177 GNDF--SQRELEILRWTAEGKTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYA 234 Query: 241 V 241 Sbjct: 235 A 235 >gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 225 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 180 WGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 GKD LT RE + LT I+ G T+ +IA L IS T+ N++++I+RK R+ Sbjct: 152 LGKDASNFVTPLTNREKQILTLIANGNTNKQIANSLEISEQTIKNHVSAILRKLNANDRA 211 Query: 235 GAIAYAVR 242 A+ A+R Sbjct: 212 HAVVVAIR 219 >gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli] Length = 241 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I Sbjct: 179 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L W+ +GKT+ +IA ILG+S TVN ++ I K +TRS A A Sbjct: 259 LTPRESDVLLWLGKGKTNRDIADILGMSPRTVNKHLEHIFVKLGVETRSAAAVLA 313 >gi|297560053|ref|YP_003679027.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844501|gb|ADH66521.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 200 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 36/58 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT REV+ L SEG + +IA L ++ TV NY+++ M+KT T+TR A YA Sbjct: 137 DCPLTDREVDVLRATSEGYSVADIAAQLHLAEGTVRNYLSNAMQKTQTRTRHEAARYA 194 >gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] Length = 259 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ GKT+ EI+ L I+ NTV N++ +I+ K R AYAVR+++ Sbjct: 153 LTPREREIVMYVGAGKTNREISEALIIAENTVKNHLKNILEKLQLANRVQLAAYAVRHHL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 90 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + +IA L IS NTV N+I +I+ K +R A+ YAVR + Sbjct: 27 LTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 86 Query: 246 V 246 + Sbjct: 87 L 87 >gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces ambofaciens ATCC 23877] Length = 223 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + H ++ LT RE E L ++EG ++ +IA LGIS + V +AS++ K Sbjct: 146 DRLRESGQHRPREVSLTARENEVLLLLAEGMSNKQIARRLGISSHGVKRIVASLLLKLGA 205 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ A++N ++ Sbjct: 206 PNRTAAVVTAIQNGLI 221 >gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] Length = 215 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 237 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231 >gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2] gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1] gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1] gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2] Length = 258 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 189 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 248 Query: 246 V 246 + Sbjct: 249 I 249 >gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] Length = 259 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 211 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+N + Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis] gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis] Length = 219 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE E L W+ GKT+ EI +IL IS NTV N++ I +K R+ A+A Sbjct: 155 LSDREQEILHWVRSGKTNLEIGMILNISANTVKNHLKRIFQKLDVSCRAQAVA 207 >gi|86748375|ref|YP_484871.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571403|gb|ABD05960.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 309 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +F LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 244 EFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 253 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL W + GKTS EIA IL +S TV +I + +K R A+A A+ Sbjct: 191 LTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQAVARAI 246 >gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 238 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + W ++GKTS EIA +L IS +TVN Y+ + +RK R+ +A +R + Sbjct: 177 LTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGL 236 Query: 246 V 246 + Sbjct: 237 I 237 >gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13] gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13] gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13] Length = 259 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 226 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPP----- 123 Q+ S++ + P LV + + D Y V QRP PV ++ T Sbjct: 36 QEALSLLETYHPHLLVSDIKMPRTDGYELVAQVRQRPEFRLLPVVFLTEKSTTHERIRGY 95 Query: 124 -AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 AG D Y F++ + + L + +I+ + ++ L QA + KS Sbjct: 96 QAGCDV-YLPKPFEMEELGAVIRNLLERSQIMESEWRYKNRQLQEKQAELKKSQPPPPLP 154 Query: 183 DF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + ELT RE + L +++G ++ EI L +S TV Y++S++RKT T R+ Sbjct: 155 ELPTLNPPPELTAREKQVLELLAQGLSNVEIGQQLHLSPRTVEKYVSSLLRKTETNNRAE 214 Query: 236 AIAYAVRNNIV 246 + +A+ +++V Sbjct: 215 LVRFALEHHLV 225 >gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 309 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E LTW++ GK++ +I ILG+S TV+ ++ + K + R A A A++ Sbjct: 246 LNLTSREAEVLTWVARGKSNRDIGEILGLSPRTVDKHLEQVYAKIGVENRVAATALAIQT 305 >gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 215 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHMSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 216 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT REV+ L +++G T+ EIA LG+S TV N ++ I K R+ A YA+R Sbjct: 151 ELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREG 210 Query: 245 IV 246 + Sbjct: 211 LA 212 >gi|269837258|ref|YP_003319486.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786521|gb|ACZ38664.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 549 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++EGKT+ IA L IS TV +I++I K +R+ A AYA + I Sbjct: 485 LTAREVEVLRLVAEGKTNRAIAEDLFISEKTVARHISNIFTKLDLSSRAAATAYAYEHGI 544 Query: 246 V 246 V Sbjct: 545 V 545 >gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LTGRE+E L +++GKT+ EIA +L I+ TV ++ +I+ K R A+ A++ Sbjct: 157 DHPLTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVALQ 216 Query: 243 NNIV 246 ++ Sbjct: 217 KRLI 220 >gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445] gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330] gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis biovar Abortus 2308] gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M5-90] Length = 259 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] Length = 259 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 251 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ + Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGL 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I Sbjct: 198 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 257 Query: 246 V 246 + Sbjct: 258 I 258 >gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 272 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E++CL W SEGKT+ EI+ IL S T++ ++ + RK + +R A++ AV Sbjct: 192 DLTPKEMDCLYWASEGKTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACG 251 Query: 245 IV 246 +V Sbjct: 252 LV 253 >gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 211 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+N + Sbjct: 151 LTKREKEVLREITKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|149915149|ref|ZP_01903677.1| two-component response regulator, putative [Roseobacter sp. AzwK-3b] gi|149810870|gb|EDM70709.1| two-component response regulator, putative [Roseobacter sp. AzwK-3b] Length = 299 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G I RD L +I LL S + F+LT RE E L W++ GKT+ +I+ IL Sbjct: 208 GVSIARDYLVKITLLEG------ASNEEKLRAAFDLTARESEVLFWLTLGKTNRDISAIL 261 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +S TVN ++ + +K R+ A A R Sbjct: 262 DLSARTVNKHLEQVFQKMGVDNRTSAAVLADR 293 >gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR Length = 259 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249 Query: 246 V 246 + Sbjct: 250 I 250 >gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5] gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT REV CLTW S GKT EIA +L I TV NY+ K + A+ AV Sbjct: 177 YELTPREVTCLTWASLGKTMSEIADLLQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQ 236 Query: 244 NIV 246 +++ Sbjct: 237 HLI 239 >gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT REV+ L +++G T+ EIA LG+S TV N ++ I K R+ A YA+R Sbjct: 151 ELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREG 210 Query: 245 IV 246 + Sbjct: 211 LA 212 >gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 228 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELTGRE E L +++G T+ EI+ L IS TV N++++I+RK R+ A+ A++ Sbjct: 165 ELTGREKEILELMAQGYTNKEISKELYISEKTVKNHVSNILRKMDVTDRTQAVITALKCG 224 Query: 245 IV 246 +V Sbjct: 225 VV 226 >gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 220 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +++G ++ EIA L IS NTV N+I +I+ K K+R A YAVR+ + Sbjct: 157 LTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRNILEKLQMKSRMEAAMYAVRSRL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416] gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia] gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 210 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++GKT+ E+A L IS TV ++++I+ K + R+ A+ YA R+ Sbjct: 148 QLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] Length = 320 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E W++ GKT+ +IA IL +S TVN ++ I K + R+ A+AY Sbjct: 256 QLTQREAEVSHWLALGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAY 310 >gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 220 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT + EGK+S EIA ILG+S T+ + IM K +G + A+R + Sbjct: 156 LTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVRQAIRIGL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S] gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 265 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L + A+ S D+H ++ +L+ RE+E + W+ GKT+ EI +IL IS TV N+ Sbjct: 179 LPVQHPADKEASEDLHEEENEALEQLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNH 238 Query: 221 IASIMRKTATKTRSGAIA 238 + I +K R+ A++ Sbjct: 239 LQRIFKKLDVLNRAQAVS 256 >gi|115526593|ref|YP_783504.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520540|gb|ABJ08524.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 309 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 35/53 (66%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 K+ LT RE E L+W+S+GKT+ +IA ILG+S TV+ ++ I K + R+ Sbjct: 243 KELGLTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 295 >gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 215 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ E+A +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans ATCC BAA-247] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Alistipes shahii WAL 8301] Length = 212 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +L+ RE E L + G ++ EIA L IS+ TV+ + A+I+ KT K + + YA+R Sbjct: 147 DEQLSSREREILVAVCRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIR 206 Query: 243 NNIV 246 N IV Sbjct: 207 NGIV 210 >gi|253999547|ref|YP_003051610.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986226|gb|ACT51083.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 265 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ RE+E + W+ GKT+ EI +IL IS TV N++ I +K R+ A++ Sbjct: 203 QLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVS 256 >gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 210 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++GKT+ E+A L IS TV ++++I+ K + R+ A+ YA R+ Sbjct: 148 QLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 246 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W ++GK++ EI IL I++ T ++A+ RK ++ A+A A+R + Sbjct: 184 LTHRECETLNWTAQGKSAWEIGEILQIAQRTAEEHLATAARKLGAVNKTHAVAIAIRQKL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|218514607|ref|ZP_03511447.1| autoinducer transcriptional regulator protein [Rhizobium etli 8C-3] Length = 161 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I Sbjct: 99 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 158 Query: 246 V 246 + Sbjct: 159 I 159 >gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 219 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L +++G T+ EIA LGIS TV N ++ I K R+ A YA+R Sbjct: 154 DLTDREVQILRLLAQGATNQEIADELGISEKTVRNRLSEIFSKLHLNNRTQAALYAIREG 213 Query: 245 IV 246 + Sbjct: 214 LA 215 >gi|254788088|ref|YP_003075517.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237687530|gb|ACR14794.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 303 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L W++ GKT+ EI ILG S T+N ++ I +K + R+ A A A++ Sbjct: 242 LPLTTRESEVLLWLARGKTNREIGQILGTSPRTINKHLEQIYKKLEVENRTTAAAKALQ 300 >gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 229 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L +++G ++ EI L +S TV Y++S++RKT T R+ + +A+ N+ Sbjct: 167 ELTEREKQVLELLAQGLSNVEIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDND 226 Query: 245 IV 246 +V Sbjct: 227 LV 228 >gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 211 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL++ M DV D +L+ RE E L + G ++ EIA L IS+ TV+ + A+ Sbjct: 130 LLSSLTGRMRTRDDV---PDEQLSVREREILVAVCRGLSNQEIADELFISKRTVDKHRAN 186 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ KT K + + YA+RN IV Sbjct: 187 ILEKTGCKNTASLVVYAIRNGIV 209 >gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 247 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE E L W+ GKT+ EI+ IL IS+ TV N++ +I+RK + RS A A + Sbjct: 183 MTKRESEILQWLHMGKTNWEISSILDISQLTVKNHVQNILRKLDVQNRSQAAVKAAK 239 >gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 500 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++EG ++ E A L +S TV +Y+++I++K K R+ AI A+R+ Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 245 IV 246 I+ Sbjct: 499 II 500 >gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 221 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D+ LT RE E L + +GKT E A L IS T + YI S+ K ++RS A+A A Sbjct: 151 ARDYGLTPREQEILEVLVQGKTIKEAAAALKISYYTADEYIRSVYDKLQVRSRSSAVAKA 210 Query: 241 VRNNIV 246 V +V Sbjct: 211 VSEGLV 216 >gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 277 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I Sbjct: 215 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 274 Query: 246 V 246 + Sbjct: 275 I 275 >gi|310657820|ref|YP_003935541.1| two-component response regulator yhcz [Clostridium sticklandii DSM 519] gi|308824598|emb|CBH20636.1| Two-component response regulator yhcZ [Clostridium sticklandii] Length = 213 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE++ ++ IS+G ++ IA L IS TV N+++SI+RK + R+ Y + Sbjct: 149 KSQKLTKRELQVMSLISKGMSNKAIAKHLEISDKTVKNHVSSILRKLSLNDRTQIAVYTL 208 Query: 242 RNNI 245 NNI Sbjct: 209 SNNI 212 >gi|294509070|ref|YP_003565959.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM B1551] gi|294352374|gb|ADE72696.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM B1551] Length = 202 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 KDFE LT E + L IS+ KT+ EI++ L IS+ TV +I+SI+RK +R GA+ Sbjct: 134 KDFETLTSAEQKILLLISKDKTNYEISMDLSISKRTVEYHISSIIRKLDVDSRVGAVVKG 193 Query: 241 VRNNIV 246 ++ ++ Sbjct: 194 IKKGLI 199 >gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family [Leptospirillum ferrodiazotrophum] Length = 219 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L ++EG+++ +IAV LGIS +TV +I SI+ K + TR+ A A R Sbjct: 159 LSARETEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILVKLSAATRADAAVKAFRKG 217 >gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 306 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 32/48 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L+W+++GKT+ +I ILG+S TVN ++ I K +TR Sbjct: 245 LTPRETEVLSWLAKGKTNRDIGDILGVSPRTVNKHLEHIFEKLGVETR 292 >gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617] Length = 240 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ ++ +YA Sbjct: 178 LDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAA 235 >gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia thailandensis MSMB43] Length = 239 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI ILGIS TVN ++ +++ K + A+ A+ + Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGL 235 Query: 246 V 246 V Sbjct: 236 V 236 >gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] Length = 215 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N + Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 210 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++GKT+ E+A L IS TV ++++I+ K + R+ A+ YA R+ Sbjct: 148 QLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 215 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N + Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|284045809|ref|YP_003396149.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950030|gb|ADB52774.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 381 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 36/53 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE+E L ++EG+T+DEIA L IS TV +++SI+RK R+ A+A Sbjct: 315 LTRRELEVLRLVAEGRTNDEIATALVISVGTVKFHVSSILRKLRVGNRAQAVA 367 >gi|241206011|ref|YP_002977107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859901|gb|ACS57568.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 305 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 12/112 (10%) Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTG 188 VA +R G++ + G+ L+ L IG L AA Q +S D + F LT Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQ----RSDDEVLRQRFSLTQ 246 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 247 RESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 500 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++EG ++ E A L +S TV +Y+++I++K K R+ AI A+R+ Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 245 IV 246 I+ Sbjct: 499 II 500 >gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 218 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L+ +++G T+ E+A +L IS TV N+ A+IM K TR I +AV+ Sbjct: 153 QLTDREKEILSLVAKGYTNKEVADLLSISAKTVENHKANIMDKLNLNTRRDLIRFAVKRG 212 Query: 245 IV 246 ++ Sbjct: 213 LL 214 >gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM 12163] Length = 242 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ ++ +YA Sbjct: 180 LDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAA 237 >gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] Length = 215 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ E+A +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|327403986|ref|YP_004344824.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319494|gb|AEA43986.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 224 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + I E KT+ EIA L I++ TV + ++ KT K +G I YA++NNI Sbjct: 156 LSERELEIIQLICEQKTAKEIADKLFINQRTVEGHKNNMFAKTGAKNIAGLIIYAIQNNI 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] Length = 208 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197 Query: 239 YAVRNNIV 246 Y ++N + Sbjct: 198 YMLKNETI 205 >gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K FE LT RE E L I++GK + EI + IS TV+ ++ +I RK +TR+ A+ YA Sbjct: 189 KKFEKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYA 248 Query: 241 VRNNIV 246 V I+ Sbjct: 249 VLKGII 254 >gi|90421195|ref|ZP_01229096.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] gi|90334572|gb|EAS48355.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] Length = 299 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 RE E L W+S GK++ +IA IL +S TVN ++ +I RK + RS A A A+ Sbjct: 240 REAEVLLWLSRGKSNQDIADILKLSVRTVNKHLETIFRKLGVENRSAATAIAMEQ 294 >gi|295400759|ref|ZP_06810736.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294977340|gb|EFG52941.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 185 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 42/61 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK +R GA+ A++ I Sbjct: 124 LTNVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVGAVVKAMKLGI 183 Query: 246 V 246 + Sbjct: 184 L 184 >gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 205 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Sbjct: 135 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 194 Query: 239 YAVRNNIV 246 Y ++N + Sbjct: 195 YMLKNETI 202 >gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 208 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197 Query: 239 YAVRNNIV 246 Y ++N + Sbjct: 198 YMLKNETI 205 >gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703] gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 236 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H D + RE + L W S GKT EIA+ILGI +TV +I +++RK AI Sbjct: 166 HRSNDMLFSERENDILYWASMGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKHAIR 225 Query: 239 YAVRNNIV 246 + N++ Sbjct: 226 MGIEMNLI 233 >gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 307 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT RE E L WI++GK++ +I ILG+S TVN ++ I K + R+ A A Sbjct: 242 QHFSLTQRESEVLLWIAKGKSNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKAA 301 >gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X513] gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 205 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Y ++N Sbjct: 141 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200 Query: 245 IV 246 + Sbjct: 201 TI 202 >gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 240 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ ++ +YA Sbjct: 178 LDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAA 235 >gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E LT ++EGK++ +IA IL IS TV ++ ASIM++ +T + I YA+R+ Sbjct: 154 LSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKYAIRHG 212 >gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. BTAi1] Length = 140 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE + L ++EG ++ EIA LGIS +T ++ S++ K R+ A+A+A R Sbjct: 76 FQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARR 135 Query: 244 NIV 246 I+ Sbjct: 136 GII 138 >gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] Length = 215 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I++GK++ EIA L I+ TV ++++++ K R+ A YAVR+ Sbjct: 151 ELTKRELEVLREIAKGKSNKEIASSLYITEKTVKTHVSNLLSKLELADRTQAALYAVRHG 210 Query: 245 I 245 I Sbjct: 211 I 211 >gi|261493914|ref|ZP_05990423.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496858|ref|ZP_05993227.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307475|gb|EEY08809.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310417|gb|EEY11611.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 583 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 43/68 (63%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H + L+ RE+E LT IS G +++EIA L IS+ TV+ +I +I KT T++R+ Sbjct: 78 HTDLPYGLSKREIELLTLISSGLSNEEIANELCISKRTVDKHIENIFAKTHTESRTLLAV 137 Query: 239 YAVRNNIV 246 +A+ ++V Sbjct: 138 FAITEHLV 145 >gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] Length = 238 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W +EGKTS EIA I+G++ TVN ++ + M+K + A AV Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAV 233 >gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 239 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 189 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AIA Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia] Length = 239 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator [Thermoanaerobacter sp. X514] gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X514] gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 208 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Y ++N Sbjct: 144 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 203 Query: 245 IV 246 + Sbjct: 204 TI 205 >gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] Length = 235 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225 Query: 246 V 246 + Sbjct: 226 I 226 >gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2] gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +++GKT+ +IA L I+ TV ++++I+ K + R+ A+ YA +++ Sbjct: 148 ELTSREMEILLLMTQGKTNQDIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHS 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 222 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I+ GKT+ ++A L IS TV N+++ IM+K + R+ A+ +A+R + Sbjct: 155 LSQRELEVLSRIARGKTTAQVARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|291301198|ref|YP_003512476.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570418|gb|ADD43383.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 826 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + LT ++ G+ + IAV LGI+R TV +I + MRK KTR+ A A Sbjct: 763 LTSREQQVLTMVAAGEPTRRIAVALGITRETVETHIRAGMRKLGAKTRTEAAVRA 817 >gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] Length = 254 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F T RE ECL W++ G+ + EIA IL +S TV ++I +K R+ A+A A+ Sbjct: 190 FGFTPREHECLLWLTAGRANKEIAHILNLSEKTVEHHIKRACKKLRVTNRTHAVARAM 247 >gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 309 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 37/68 (54%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 KS D F LT RE E L WI++GK++ +I ILG+S TVN ++ I K + R Sbjct: 236 KSDDHLLKSHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENR 295 Query: 234 SGAIAYAV 241 + A A Sbjct: 296 ASAAVKAA 303 >gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653] gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653] Length = 235 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225 Query: 246 V 246 + Sbjct: 226 I 226 >gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L I++G+++ EIA L IS+ TV +++ I+ K + R A+ YA R Sbjct: 155 DNPLTPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYR 214 Query: 243 NNI 245 + Sbjct: 215 QGL 217 >gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 243 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R Sbjct: 180 IELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRR 239 Query: 244 NIV 246 + Sbjct: 240 GYI 242 >gi|218513582|ref|ZP_03510422.1| LuxR family transcriptional regulator [Rhizobium etli 8C-3] Length = 65 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + W++ GKT+ EI IL +S TVN +IA+ K + +A A+RN I Sbjct: 4 VTPREREIIGWMAAGKTAAEIGAILAVSPITVNTHIANAKAKLGVFKETALVAEALRNGI 63 Query: 246 V 246 + Sbjct: 64 I 64 >gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 239 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia] gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] Length = 239 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|300814540|ref|ZP_07094796.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511367|gb|EFK38611.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 208 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +LT RE++ L ++ G +DEIA LGIS NTV +IA ++ KT KTR+ Sbjct: 143 QLTPREIQVLRLLTTGVGNDEIASKLGISENTVKTHIAHLLSKTGFKTRT 192 >gi|119896947|ref|YP_932160.1| LuxR family transcriptional regulator [Azoarcus sp. BH72] gi|119669360|emb|CAL93273.1| putative transcriptional regulator, LuxR family [Azoarcus sp. BH72] Length = 318 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT RE E L W++ GKT+ +I ILG S TV+ ++ + K +TR+ A + A+ Sbjct: 251 FRLTTREAEVLYWVTRGKTNRDIGDILGSSPRTVHKHLEHVFEKLGVETRTAAASMAL 308 >gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 92 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D D L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 1 MSSVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60 Query: 233 RSGAIAYAVRN 243 R + +++ N Sbjct: 61 RVALLNWSMDN 71 >gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 225 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 180 WGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 GKD LT RE + LT I+ G T+ +IA L IS T+ N++++I+RK R+ Sbjct: 152 LGKDASSFVAPLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRA 211 Query: 235 GAIAYAVR 242 A+ A+R Sbjct: 212 HAVVVAIR 219 >gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2] gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2] Length = 245 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT++S+G T EIA ++GI TVN++I SI +K +R+ A A + + Sbjct: 185 LTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHIKSIYKKLNVSSRAEAAVLASKQGL 244 Query: 246 V 246 V Sbjct: 245 V 245 >gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT RE+E L I++G ++ EIA L IS+ TV +++ I+ K + R A+ YA Sbjct: 161 EDIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVYAF 220 Query: 242 RNNI 245 R+ + Sbjct: 221 RHGL 224 >gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] Length = 223 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G ++ +I LG+S TV N++ SI K R+ A+ Y ++N I Sbjct: 160 LTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYVLKNKI 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 237 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 176 LTDREVEVLKWAADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAA 231 >gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia stabilis] Length = 239 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|16332248|ref|NP_442976.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1653878|dbj|BAA18788.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 228 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + ELT REV L ++EGKT+ EI L ++ +TV Y+ +IMRK + R+ A Sbjct: 158 DYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSA 217 Query: 237 IAYAVRNN 244 +R Sbjct: 218 AIAGLREG 225 >gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 217 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 165 LAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L AY AN+ + ++ + ELT RE + LT + +G ++ +IA L +S +TV +++ S Sbjct: 136 LVAYLANLNHTVTELDTQLEIELTRRETQVLTALCQGGSNLDIADSLFVSEHTVKSHLYS 195 Query: 224 IMRKTATKTRSGAIAYAVRN 243 I RK K R AIA+A RN Sbjct: 196 IFRKLEVKNRMQAIAWAKRN 215 >gi|116253485|ref|YP_769323.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258133|emb|CAK09234.1| putative LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 305 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 12/112 (10%) Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTG 188 VA +R G++ + G+ L+ L IG L AA Q +S D + F LT Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQ----RSDDEVLRQRFSLTQ 246 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 247 RESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 235 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W GKT+ EI+ ILG S TVN +IA+ RK R A+ A+ Sbjct: 173 LTMRETEVLKWSGAGKTTWEISRILGCSERTVNFHIANASRKLGASNRLQAVGMALAQEF 232 Query: 246 V 246 + Sbjct: 233 I 233 >gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 189 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AIA Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|254448276|ref|ZP_05061738.1| Two Component Transcriptional Regulator, LuxR family [gamma proteobacterium HTCC5015] gi|198262143|gb|EDY86426.1| Two Component Transcriptional Regulator, LuxR family [gamma proteobacterium HTCC5015] Length = 208 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R +L L+ L A Q ++S DV EL+GR+++ L +++G T+ EIA +L Sbjct: 114 RRVLAGELYHPALEATAQHPSWESDDVDRAAFSELSGRQMQVLAEMAKGSTNKEIAAVLN 173 Query: 212 ISRNTVNNYIASI 224 IS +TV +IA + Sbjct: 174 ISEHTVKTHIAKL 186 >gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 603 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L I++G ++ EIA L IS+ TV Y++ I+ K + R A+ YA R Sbjct: 539 DVGLTPRELEVLRLIADGLSNSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYR 598 Query: 243 NNIV 246 +V Sbjct: 599 TGLV 602 >gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida] gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 248 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+S EI++ILG + TV ++ + K T R +++ A+ Sbjct: 182 DLTKREKECLAWACEGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAI 238 >gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 236 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE LTW + GK+ IA IL IS +T Y I K R GA+ A+R + Sbjct: 174 LSEREVEVLTWAARGKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGL 233 Query: 246 V 246 V Sbjct: 234 V 234 >gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii] Length = 243 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R Sbjct: 180 IELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRR 239 Query: 244 NIV 246 + Sbjct: 240 GYI 242 >gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1] gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1] Length = 216 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL +Q N + D D LT RE E L + EG ++ EI L +S TV ++++ Sbjct: 133 LLTFHQQNQRQDRD-----DNSLTEREREVLGCLVEGLSNKEIGKRLYVSDKTVKIHVSN 187 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I +K K+RS + YAV+N +V Sbjct: 188 IFKKLNVKSRSQVVIYAVQNKLV 210 >gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] Length = 212 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++G + EIA L IS NTV N++ +I+ K +R A+ YAVR Sbjct: 148 KLTDRELEVLGLVAKGLNNREIAKRLFISENTVKNHVRNILEKLQAHSRMEAVMYAVRQK 207 Query: 245 IV 246 ++ Sbjct: 208 LL 209 >gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13] Length = 210 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +++GKT+ EIA L I+ TV ++++I+ K + R+ A+ YA +++ Sbjct: 148 ELTNREMEILLLMTQGKTNQEIADELFIALKTVKVHVSNILAKLQVQDRTQAVIYAFKHS 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|256395900|ref|YP_003117464.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362126|gb|ACU75623.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 232 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G+++ I +G+S TV +++A I RK T R+G +A A+R Sbjct: 170 DLSAREIEVLRLVADGRSNKAIGQAMGLSALTVKSHLARIARKLGTGDRAGMVAVALRGG 229 Query: 245 IV 246 + Sbjct: 230 TI 231 >gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 239 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31] Length = 228 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 7/76 (9%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N+ KS D LTGRE+E L+ +++GKT+ EIA L I+ TV ++ +I+ K Sbjct: 152 NLIKS-------DHPLTGRELEILSLLAQGKTNQEIATALYITPGTVRVHVHAILHKLDV 204 Query: 231 KTRSGAIAYAVRNNIV 246 R A+ A++ ++ Sbjct: 205 SDRHQAVVLALQKRLI 220 >gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2] Length = 297 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ +T RE E L WIS GKTS EI+ IL IS T N ++ I +K ++ A A A+ Sbjct: 233 ENLPITKRESEVLYWISFGKTSWEISQILDISPRTANKHLEQIYKKLGVDNKTSAAAIAL 292 Query: 242 R 242 R Sbjct: 293 R 293 >gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 223 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDE 205 ++PK L +RL+ ++ M K +D G+ LT RE++ L I++G ++ + Sbjct: 126 VYPK----LAERLFGTSSISGDVGRMAKEIWDESRGE--RLTPREMDVLGCIAKGLSNQD 179 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I LG+S TV N++ S+ K R+ A+ Y ++N IV Sbjct: 180 IGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKIV 220 >gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 255 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+D LT RE E L +++ G S EI LGI+ TVN +I SI +K +R+ A+ +A Sbjct: 190 GRDATLTPRESEILRFVACGYVSAEIGERLGITWQTVNVHIKSIYKKLHVHSRAQAVNFA 249 Query: 241 VRNNIV 246 V ++ Sbjct: 250 VHTGLI 255 >gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 314 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F+LT RE E L W +GKT+ +I ILG S T+N ++ + K +TR+ A A A Sbjct: 252 FKLTRRESEVLYWAMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALA 308 >gi|160894687|ref|ZP_02075462.1| hypothetical protein CLOL250_02238 [Clostridium sp. L2-50] gi|156863621|gb|EDO57052.1| hypothetical protein CLOL250_02238 [Clostridium sp. L2-50] Length = 123 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K ++LT RE E L+ I +DEIA LGIS NT+ ++ +I RKT T ++ Sbjct: 64 AKGYDLTPRETEILSLIFSFANNDEIAATLGISENTIQKHLQNIFRKTGTSSK 116 >gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 265 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE E L W++ GKT+ EI+VIL +S NTV ++ ++ +K + R AIAY Sbjct: 184 LSKREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNVFQKIGVENRWSAIAY 237 >gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 201 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + +G + +IA L +S TV NYI++I+ KT TK+R AI A Sbjct: 141 LTDREIEILNLLKKGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLA 195 >gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] Length = 208 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +++GKT+ EIA L I+ TV ++++++ K + R+ A+ YA ++ Sbjct: 146 ELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHK 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella ovis ATCC 25840] Length = 235 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKA 229 >gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 6 str. 870] Length = 235 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229 >gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 253 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+ RE E L ++ G TS EI V L IS TVN +I +I RK +TR+ A+ +A Sbjct: 188 GMSDRLSSRECEVLRMVASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFA 247 >gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Burkholderia oklahomensis EO147] Length = 236 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R+ L L + L AY+ M S D +L+ REVE L W ++GKT+DEI IL Sbjct: 148 RMCLLADLTHMVLSDAYRKEMTASAD-------KLSAREVEILRWHADGKTADEIGRILS 200 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 IS +TV + + + K ++ A+A A Sbjct: 201 ISIDTVKFHTKNAVVKLGASNKTAAVARAA 230 >gi|94263624|ref|ZP_01287434.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93456044|gb|EAT06195.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 31/50 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE E L W+SEGK++ EI VI IS NTV +++ +M K R Sbjct: 153 YGLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNR 202 >gi|86356681|ref|YP_468573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280783|gb|ABC89846.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 86 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + W+++GKT+ EI ILGIS TVN +I++ K + +A A+RN I Sbjct: 25 VTPREREIIGWMAQGKTAAEIGTILGISPITVNTHISNAKAKLGVFKETALVAAALRNGI 84 Query: 246 V 246 + Sbjct: 85 I 85 >gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28] gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90] Length = 171 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 165 >gi|313887441|ref|ZP_07821130.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica PR426713P-I] gi|312923083|gb|EFR33903.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica PR426713P-I] Length = 201 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S + K L+ RE E +TW++ G T+ EIA +L +S +TV + +I K + Sbjct: 121 ESLESEEAKQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSP 180 Query: 234 SGAIAYAVRNNIV 246 SG YA+ NN++ Sbjct: 181 SGLTIYALMNNLI 193 >gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 238 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232 >gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R Sbjct: 181 ELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG 240 Query: 245 IV 246 + Sbjct: 241 YI 242 >gi|329940650|ref|ZP_08289931.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329300711|gb|EGG44608.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 287 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D L+ REV+ L W++ G T+ +A LG+ TV Y+ S MRK +TR A+ A Sbjct: 221 GADVGLSPREVDVLAWVAVGATNAGVAERLGVRPETVKAYLRSAMRKLGARTRGEAVVAA 280 >gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] Length = 294 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG +++EI+ +L IS +TV ++I I K R+ A +A R+N+ Sbjct: 234 LTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDRTQAAVWAARHNL 293 Query: 246 V 246 + Sbjct: 294 I 294 >gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] Length = 223 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G ++ +I LG+S TV N++ SI K R+ A+ Y ++N I Sbjct: 160 LTPREMDVLGCIAKGFSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYVLKNKI 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13] gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] Length = 235 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229 >gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +S+G + +IA+ L IS NTV N++ +I+ K + R AYAV++ + Sbjct: 158 LTARETEIVAHVSKGYNNKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQL 217 >gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall stress [Bacillus subtilis subsp. spizizenii str. W23] Length = 211 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+EGKT+ EI L I+ TV +I +I+ K R+ A YA RN++ Sbjct: 150 LTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens TA208] gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens LL3] Length = 210 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EGKT+ EI L I+ TV +I +I+ K R+ A YA RN++ Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] Length = 171 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 165 >gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+ECL W S GKTS EI+ IL S TV+ ++ + RK + +R A+ A Sbjct: 174 DLTPRELECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARG 233 Query: 245 IV 246 ++ Sbjct: 234 LL 235 >gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229 >gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis biovar Abortus 2308] gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445] gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 3 str. Tulya] gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5 str. 513] gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3 str. 686] gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M163/99/10] gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis B2/94] gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti M644/93/1] gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti M13/05/1] gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 4 str. 292] gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M292/94/1] gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae 5K33] gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 3 str. Ether] gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti M490/95/1] gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti B1/94] gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 9 str. C68] gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99] gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella suis 1330] gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella abortus bv. 1 str. 9-941] gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding domain [Brucella melitensis biovar Abortus 2308] gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229 >gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] Length = 238 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232 >gi|312112563|ref|YP_003990879.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217664|gb|ADP76268.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 185 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 42/61 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK +R GA+ A++ I Sbjct: 124 LTKVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVGAVVKAMKLGI 183 Query: 246 V 246 + Sbjct: 184 L 184 >gi|94266341|ref|ZP_01290042.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93453055|gb|EAT03537.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 31/50 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE E L W+SEGK++ EI VI IS NTV +++ +M K R Sbjct: 153 YGLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNR 202 >gi|302542744|ref|ZP_07295086.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460362|gb|EFL23455.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++G T+ E+A LG+S+ TV NY+++ ++KTA + R+ A+ A Sbjct: 141 LTAREREVLGASADGSTNAELARALGLSQGTVRNYLSTAIQKTAARNRADAVRIA 195 >gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 GR I +L GL+A + ++ H + L+ RE ECL W+S G +IA L Sbjct: 148 GREIAAMQLQLAGLIAFERLSVLTRQANHAHR--RLSPRERECLQWLSAGLRVTQIAHRL 205 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 IS + V+ YI + RK +TR A+A+A+ Sbjct: 206 DISESAVHLYIKNARRKFGARTREQAVAHAI 236 >gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+ECL W S GKTS EI+ IL S TV+ ++ + RK + +R A+ A Sbjct: 174 DLTPRELECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARG 233 Query: 245 IV 246 ++ Sbjct: 234 LL 235 >gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens TA208] gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 214 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + K ++LT RE + L I++GK++ EIA L IS TV ++++++ K R+ A Sbjct: 140 DQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQA 199 Query: 237 IAYAVRNNI 245 YAV+ NI Sbjct: 200 ALYAVKYNI 208 >gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] Length = 238 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232 >gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L W+++G T+ EIA +L IS TV N++ +I++K + R YA Sbjct: 146 GEQPPLTAREREILGWVAQGMTNREIAGVLHISDQTVKNHLKNILQKLHLENRVQLTRYA 205 Query: 241 VRNN 244 + Sbjct: 206 LEQG 209 >gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 216 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL Y+ +S + + ELT RE++ L + EG ++ EIA L IS +T+ +++ + Sbjct: 137 LLTYYKGKELQSM-IEPATEVELTRREIQVLKMLKEGGSNIEIADSLFISEHTIKSHLYN 195 Query: 224 IMRKTATKTRSGAIAYAVRN 243 I RK K R+ A +A RN Sbjct: 196 IFRKIEVKNRTQATRWAKRN 215 >gi|94269857|ref|ZP_01291582.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93451041|gb|EAT02000.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 31/50 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE E L W+SEGK++ EI VI IS NTV +++ +M K R Sbjct: 153 YGLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNR 202 >gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 165 LAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+AY + + K + D K +L+ REVE + +S G++ E+A +GIS TV +YI Sbjct: 144 LSAYCSMLGKVLATDSLRPKTVKLSRREVEVMQRMSWGESVKEMASWMGISEFTVQDYIK 203 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S ++K + R+ +A A+R I+ Sbjct: 204 SALKKLGVQNRAQGVADAIRQRII 227 >gi|332299624|ref|YP_004441545.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica DSM 20707] gi|332176687|gb|AEE12377.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica DSM 20707] Length = 201 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S + K L+ RE E +TW++ G T+ EIA +L +S +TV + +I K + Sbjct: 121 ESLESEEAKQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSP 180 Query: 234 SGAIAYAVRNNIV 246 SG YA+ NN++ Sbjct: 181 SGLTIYALMNNLI 193 >gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G+++ EIA LGI+ TV +++S++ K + R+ A YA++ Sbjct: 143 DLTPRESEVLVCITQGRSNQEIADELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQRG 202 Query: 245 IV 246 +V Sbjct: 203 LV 204 >gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 234 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 171 LTEREMEVLRLVAKGMHNREIAKALFISENTVKNHVRNILDKLQLHSRMEAVVYAVRERL 230 Query: 246 V 246 + Sbjct: 231 L 231 >gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family [Leptospirillum sp. Group II '5-way CG'] Length = 211 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H D L+ RE E L +S+G ++ EI I GIS +TV +I SI+ K + TR+ A Sbjct: 144 HPENDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAV 203 Query: 239 YAVRNNIV 246 A++ ++ Sbjct: 204 KAIKKGLI 211 >gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99] gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19] gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99] gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 238 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232 >gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] Length = 238 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232 >gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] Length = 218 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 44/79 (55%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y +Y + + ELT REV+ L + +G ++ EIA L IS +T+ +++ +I Sbjct: 139 LLTYYKGKESNYIIEPAIEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNI 198 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 199 FRKIEVKNRTQATSWAKRN 217 >gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E R+ L+ SEG TS +IAV L IS +TVN +AS++R+ R IA A+R Sbjct: 198 EFDARDAAILSLTSEGLTSQQIAVELKISEHTVNANVASMIRRLGVLNRPQLIATAIRKG 257 Query: 245 IV 246 ++ Sbjct: 258 LI 259 >gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 6/88 (6%) Query: 165 LAAYQANMFKSYDVHWGKDFEL------TGREVECLTWISEGKTSDEIAVILGISRNTVN 218 +AA FKS D EL T RE+E L ++ G + EIA L IS NTV Sbjct: 151 MAAKLLTEFKSMIQRRSDDRELLPAPRLTDRELEVLKLVATGMNNREIAKELFISENTVK 210 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 N++ +I+ K +R A+ YA+R I+ Sbjct: 211 NHVRNILEKLQLHSRMEAVVYAMREKIL 238 >gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L ++ G+T+ EIA LGIS TV ++I I K + R+ AI YA ++ Sbjct: 162 ELTERETDVLRLVARGRTNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIVYAFDHS 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42] gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42] Length = 210 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EGKT+ EI L I+ TV +I +I+ K R+ A YA RN++ Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 233 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDE 205 ++PK L +RL+ ++ M K +D G+ LT RE++ L I++G ++ + Sbjct: 136 VYPK----LAERLFGTPAISGDVGRMAKEIWDESRGE--RLTPREMDVLGCIAKGLSNQD 189 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I LG+S TV N++ S+ K R+ A+ Y ++N IV Sbjct: 190 IGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKIV 230 >gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 364 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L W+S GKT+ +I ILG++ TVN ++ + K +TR Sbjct: 301 FSLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 350 >gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 216 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L I+ G+++ EIA L IS NTV N++ +IM K K R+ A AVR Sbjct: 153 LTPREREILGLIARGRSNREIAQALTISENTVKNHLKNIMAKLDVKNRAQLAALAVRG 210 >gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE CL +G TS+EIA LG+S +TVN Y+ S K R AIA A+R Sbjct: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 >gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. ORS278] Length = 133 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 180 WGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 G+D F+LT RE + L ++EG ++ EIA LGIS +T ++ S++ K R+ A Sbjct: 62 HGRDSDAFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDA 121 Query: 237 IAYAVRNNIV 246 +A+A R I+ Sbjct: 122 VAHAARRGII 131 >gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|218674106|ref|ZP_03523775.1| two component transcriptional regulator, LuxR family protein [Rhizobium etli GR56] Length = 305 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S D + F LT RE E L WI++GK + +I ILG+S TVN ++ I K + R Sbjct: 232 RSDDEALRQRFSLTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 234 SGAIAYA 240 + A A Sbjct: 292 ASAAVKA 298 >gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp. ADP1] Length = 246 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W + G+ EIA IL IS TV N++ SI +K K+ AIA A+ Sbjct: 184 LTQREKEILKWTAVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASAL 239 >gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|226362510|ref|YP_002780288.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240995|dbj|BAH51343.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 127 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 D LTGRE E L I++G ++ EI L ISRNTV ++++I+RK + R+ A+A Sbjct: 63 DDPLTGREHEILGMIADGASNAEIGRDLFISRNTVRFHVSNILRKMSVNNRTAAVA 118 >gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++G T+ EI + GIS NT N++ SI++K R+ A A+ Sbjct: 148 ELTRRETEILEMLAKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRG 207 Query: 245 IV 246 I+ Sbjct: 208 II 209 >gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 217 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 40/61 (65%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ LT + +G ++ +IA L +S +TV +++ SI RK K R AIA+A R Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|319794223|ref|YP_004155863.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596686|gb|ADU37752.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 303 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L E LL A Q + + LT RE E L+W+++GKT+ +I ILG S TVN Sbjct: 217 LGETMLLFAMQRDGTAGASSARLAEAALTPRETEVLSWLAKGKTNRDIGEILGTSPRTVN 276 Query: 219 NYIASIMRKTATKTR 233 ++ I K +TR Sbjct: 277 KHLEHIFEKLGVETR 291 >gi|86358918|ref|YP_470810.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86283020|gb|ABC92083.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 305 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L AA Q +S D + F LT RE E L WI++GK + +I ILG+S TVN ++ Sbjct: 226 LTAASQ----RSDDEMLRQRFALTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQ 281 Query: 224 IMRKTATKTRSGAIAYA 240 I K + R+ A A Sbjct: 282 IYVKLGVENRASAAVKA 298 >gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri] gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri] gi|225902|prf||1403259A luxR gene Length = 250 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+S +I+ ILG S+ TV ++ + K T R +I+ A+ Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAI 238 >gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria] gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLRWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W++EGKT EI ++GISR+ V+ ++ S K +R+ A+A R + Sbjct: 182 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 241 Query: 246 V 246 + Sbjct: 242 I 242 >gi|157412510|ref|YP_001483376.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9215] gi|254526652|ref|ZP_05138704.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|157387085|gb|ABV49790.1| Regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9215] gi|221538076|gb|EEE40529.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 92 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 40/58 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ N Sbjct: 16 LSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73 >gi|312886495|ref|ZP_07746104.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311301123|gb|EFQ78183.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 263 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L +I+EG +S +IA L IS NT+ N+ +++RKT K + + AVRN + Sbjct: 203 FTKREKGVLVYIAEGLSSKQIADKLNISENTIVNHKQNMLRKTNAKNVTELVVMAVRNRV 262 Query: 246 V 246 + Sbjct: 263 I 263 >gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 788 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT R+VE L ++EG T EIA L IS TVN ++ I K TRS A YAV Sbjct: 727 QLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAVERK 786 Query: 245 IV 246 ++ Sbjct: 787 LI 788 >gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens PA1] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W++EGKT EI ++GISR+ V+ ++ S K +R+ A+A R + Sbjct: 182 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 241 Query: 246 V 246 + Sbjct: 242 I 242 >gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 349 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT RE E L W+ +GK + +IA ILG S TV ++ + K +TR+ A A+ Sbjct: 280 FKLTAREAEVLYWVIKGKINRDIAGILGASPATVKKHLEHVYAKLGVETRTAAAGMAL 337 >gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus subtilis subsp. spizizenii str. W23] Length = 215 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 43/75 (57%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +M +D K ++LT RE + L I+ GK++ EIA L IS TV ++++++ K Sbjct: 135 HMRNQHDPEKEKIYQLTRREKDVLNEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 194 Query: 231 KTRSGAIAYAVRNNI 245 R+ A +AV+ N+ Sbjct: 195 ADRTQAALFAVKYNL 209 >gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 205 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L IS G ++ EIA L +S TV N++ +I +K K R+ A Y ++N Sbjct: 141 DLTPREIEILKLISNGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200 Query: 245 IV 246 + Sbjct: 201 TI 202 >gi|291298679|ref|YP_003509957.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567899|gb|ADD40864.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 386 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 41/61 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L+ ++ G ++ ++A LGIS TV ++++++RKT T +R+ A +AV + Sbjct: 299 ELTAREKEVLSCLAAGMSNRQVAKSLGISVRTVTVHVSNLLRKTGTGSRTEAALWAVEHG 358 Query: 245 I 245 + Sbjct: 359 L 359 >gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905] gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905] Length = 203 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 34/53 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE + LT ++EGKT+ EIA L +S TV NYI++I+ K R AIA Sbjct: 142 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIA 194 >gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 280 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+ECL W S GKTS EI+ IL S TV+ ++ + RK + +R A+ A Sbjct: 192 DLTPRELECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARG 251 Query: 245 IV 246 ++ Sbjct: 252 LL 253 >gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] Length = 244 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECLTW+++GK + +I IL +S NT+ ++ + +RK R A A Sbjct: 182 LTRRERECLTWVAQGKDTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKAT 237 >gi|330817555|ref|YP_004361260.1| response regulator receiver protein [Burkholderia gladioli BSR3] gi|327369948|gb|AEA61304.1| response regulator receiver protein [Burkholderia gladioli BSR3] Length = 324 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F LT RE E L W+S GKT+ +I IL ++ TVN ++ + RK +TRS Sbjct: 261 FGLTTREAEVLLWVSRGKTNRDIGDILDMAPRTVNKHLEHLFRKLHVETRS 311 >gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 33/45 (73%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 LT RE + L W SEGKTS+EIA+++G+S TVN +I + ++K + Sbjct: 178 LTLREKDILRWCSEGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222 >gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 230 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I+EG T+ EIA L +S TV +I ++ KT K R+ A+ YA + Sbjct: 162 LTAREVEVLALIAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKDRAQAVRYAYAKGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|209550642|ref|YP_002282559.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536398|gb|ACI56333.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S D + F LT RE E L WI++GK + +I ILG+S TVN ++ I K + R Sbjct: 232 RSDDEMLRQRFSLTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 234 SGAIAYA 240 + A A Sbjct: 292 ASAAVKA 298 >gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R + Sbjct: 180 LSTRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] Length = 222 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I+EGK+S EI +L IS TV ++ A++MRK + + + YA++ Sbjct: 155 LTKREKEILRLIAEGKSSKEIGAVLFISSRTVEHHRANMMRKLGCRKIAELVRYAIQKG 213 >gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 227 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE L +++G ++ EIAV LG+S TV N ++ I K R+ A YA+R Sbjct: 160 ELTEREATILRLLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLNNRTQAALYALREG 219 Query: 245 IV 246 I Sbjct: 220 IA 221 >gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + EIA L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 171 LTDREMEVLRLVAKGMNNREIAKQLFISENTVKNHVRNILDKLQLHSRMEAVVYAVRERM 230 Query: 246 V 246 + Sbjct: 231 L 231 >gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp. subtilis str. 168] gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5] gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis] gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis BSn5] Length = 211 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+EGKT+ EI L I+ TV +I +I+ K R+ A YA RN++ Sbjct: 150 LTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|251800174|ref|YP_003014905.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547800|gb|ACT04819.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 229 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 42/63 (66%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + L+ +E+ + +I++G T+ EIA L I+ +TV +I ++M KT+++ R+ A+A R Sbjct: 166 YALSEKELRVMQYIADGFTTKEIAPFLNIAESTVKYFINNVMLKTSSRNRTEAVANLYRA 225 Query: 244 NIV 246 N++ Sbjct: 226 NLL 228 >gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 230 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I G+ + EIA LGIS TV +++ I K + R+ AI +A + Sbjct: 162 ELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRAAAIVFAFDHG 221 Query: 245 IV 246 +V Sbjct: 222 VV 223 >gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 123 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT RE++ L ++EG ++ IA LGIS +TV ++ S++ K R+ A+A+A Sbjct: 57 EDIALTQRELDVLALMAEGASNKMIARQLGISVHTVKFHVGSLLDKLDATGRTDAVAHAA 116 Query: 242 RNNIV 246 R ++ Sbjct: 117 RRGVI 121 >gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 230 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +LA Y+ + S D + ELT RE++ L I G ++ EI LGIS TV +++ Sbjct: 137 VLATYR-TVAPSTDGERNRLTELTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGH 195 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K + R+ AI YA + IV Sbjct: 196 IFLKLDLRDRAAAIVYAFDHGIV 218 >gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp. WH 7803] Length = 227 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLT 195 G+M + G+ I D + + +A + + DV +E L+ RE+E L Sbjct: 120 GVMFVSSLGKGIDGDFIRSLSAIA--EGGNYYPKDVQTAAGYEDIEILPELSDREMEVLK 177 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S G T+ EIAV L +S TV +++SI+ K K R+ A+ A++ I Sbjct: 178 VLSCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227 >gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 148 FPKGRIILRDR-LWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 F I L +R L + L+A Y + + K + L+ RE E LT + G++SDE Sbjct: 140 FGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLREREVLTLAAVGRSSDE 199 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L I+ TV +I S +K TR+ A+ A+R+ I+ Sbjct: 200 IADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRII 240 >gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE CL +G TS+EIA LG+S +TVN Y+ S K R AIA A+R Sbjct: 174 LTERETSCLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 >gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 237 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + +IA L IS NTV N+I +I+ K +R A+ YAVR + Sbjct: 174 LTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233 Query: 246 V 246 + Sbjct: 234 L 234 >gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 90 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 43/57 (75%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L +++G T+++IA +L IS+ TV+N++++I++KT TK R + +A++ Sbjct: 11 LSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWALQ 67 >gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3] gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4] Length = 269 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+S +I+ ILG S+ TV ++ + K T R +I+ A+ Sbjct: 201 DLTKREKECLAWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAI 257 >gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1] Length = 228 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L I+ G+T+ EIA LGIS TV +++ I K + R+ AI YA + Sbjct: 162 ELTDRESDVLRLIARGQTNTEIASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYAFDHG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W++EGKT EI ++GISR+ V+ ++ S K +R+ A+A R + Sbjct: 182 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 241 Query: 246 V 246 + Sbjct: 242 I 242 >gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 242 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ YA++ Sbjct: 164 LTSREIEILDCIARGLSNKEIATQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRG 222 >gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 241 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R + Sbjct: 180 LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 361 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L W+S GKT+ +I ILG++ TVN ++ + K +TR Sbjct: 298 FGLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 347 >gi|308050904|ref|YP_003914470.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307633094|gb|ADN77396.1| transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 225 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 10/113 (8%) Query: 130 YCSLTFDVARIRIGLMLLFPKG-RIILRDRLW--------EIGLLAAYQANMFKSYDVHW 180 + +L F +R + + P+ R +L D+LW + L + S +V Sbjct: 92 FIALGFSGLIVRDYTLEMLPRAIRALLADQLWFSREAMSSSLKQLVNVGGHCGHSVNV-L 150 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 G ++L+ +E + ++ +GK++ EIA+ + IS +TV N++++I++KT ++R Sbjct: 151 GAQYQLSAKEQQVFHYLLQGKSNKEIALGMNISLSTVKNHVSNILQKTHKQSR 203 >gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] Length = 233 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++GK++ EIA L I+ TV ++++I+ K + R+ A YA+++ Sbjct: 158 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 203 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 34/53 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE + LT ++EGKT+ EIA L +S TV NYI++I+ K R AIA Sbjct: 142 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIA 194 >gi|240170339|ref|ZP_04748998.1| transcriptional regulator, LuxR family protein [Mycobacterium kansasii ATCC 12478] Length = 528 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L IS T N++ K R GA YA+RN + Sbjct: 465 LTPREVEVLCLVARGASNKEIAAALVISEKTARNHVERTYAKIGVTNRIGASMYALRNGL 524 Query: 246 V 246 V Sbjct: 525 V 525 >gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ Y A + + D D LT RE+E L I+ G ++ EIA L IS TV Y++ Sbjct: 138 LVGRYAARIRPAEDTP--DDTALTPRELEVLRHIANGLSNSEIAATLVISHETVKTYVSR 195 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 I+ K + R A+ YA R + Sbjct: 196 ILTKLGLRDRVQAVVYAYRRGL 217 >gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G+++ EI LG+S TV +++A I RK T R+ +A A+R Sbjct: 163 DLSSREIEVLRLVADGRSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAG 222 Query: 245 IV 246 I+ Sbjct: 223 II 224 >gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551] gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551] gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ + Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 218 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT REV+ L + EG ++ EIA L IS +T+ +++ +I RK K R+ A ++A R Sbjct: 157 EVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 216 Query: 243 N 243 N Sbjct: 217 N 217 >gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni CNB-2] Length = 274 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 168 YQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 ++AN F + K FE LT REVE L I++GK+S E+A L IS TV+ +I +I Sbjct: 196 FKAN-FHEESIFKHKSFESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYG 254 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +TR+ A+ A+ I+ Sbjct: 255 KMQVRTRAQAVRCAILIGII 274 >gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 199 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 34/53 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE + LT ++EGKT+ EIA L +S TV NYI++I+ K R AIA Sbjct: 138 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIA 190 >gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 227 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LTGRE+E L+ +++GKT+ EIA L I+ TV ++ +I+ K R A+ A++ Sbjct: 157 DHPLTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVALQ 216 Query: 243 NNIV 246 ++ Sbjct: 217 KRLI 220 >gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a] Length = 235 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + +LT RE E L W GKTS EI+ +L IS NTVN +I + + K + ++ A+ A Sbjct: 171 EVKLTSREKEVLKWTGSGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQA 228 >gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I+EG ++ EIA L +S TV +I ++ KT K R+ A+ YA R + Sbjct: 161 LTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKDRAQAVRYAFRKGL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 219 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L I++G + EIA L IS+ TV Y++ I+ K + R A+ YA R Sbjct: 155 DVGLTPRELEVLRLIADGLANSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYR 214 Query: 243 NNIV 246 +V Sbjct: 215 TGLV 218 >gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 165 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W++EGKT EI ++GISR+ V+ ++ S K +R+ A+A R + Sbjct: 104 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 163 Query: 246 V 246 + Sbjct: 164 I 164 >gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia ubonensis Bu] Length = 222 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E LT ++EG + EIA L IS NTV +++SI K +R+ A+ +R+ + Sbjct: 160 LTPREIEVLTMLAEGLGNKEIARQLDISDNTVKFHLSSIFGKLGASSRTEAVMQGMRHGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|114328502|ref|YP_745659.1| LuxR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316676|gb|ABI62736.1| transcriptional regulator, LuxR family [Granulibacter bethesdensis CGDNIH1] Length = 306 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE E L WI GK + +IA ILG+S TVN ++ I K + R+ A A ++ Sbjct: 243 LPVTAREAEVLLWIGRGKQNRDIADILGLSPRTVNKHLEQIYTKIGVENRAAAAAVVMK 301 >gi|88854587|ref|ZP_01129254.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88816395|gb|EAR26250.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 538 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 44/64 (68%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +L+ RE+E L +S+G ++ EIA L +S +TV+ ++A+I+ K +R+GA +YA++ Sbjct: 475 EGQLSARELEVLRLVSQGLSNPEIAASLVLSEHTVHRHVANILTKLDQTSRTGAASYAIQ 534 Query: 243 NNIV 246 ++ Sbjct: 535 AGLL 538 >gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 222 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT EV CL WI GKT DE+A I+G +R T+ ++ + +K R+ A+ A + Sbjct: 144 LTPLEVSCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGAVNRTQAVFLAAQ 200 >gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family [Thiomonas sp. 3As] Length = 237 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W ++GKT+ EIA IL IS T N +IA+ + K ++ A+ A Sbjct: 176 LTDREIEVLRWTADGKTASEIADILNISERTANFHIANAIAKLHAPNKTAAVIRA 230 >gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 235 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W GKT+ E++ ILG S T+N +IA+ RK + +R A+ A+ + Sbjct: 173 LTLRESEVLKWTGVGKTTWEMSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQGL 232 Query: 246 V 246 + Sbjct: 233 I 233 >gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 256 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 7/119 (5%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELT 187 +L R + GL++ + +D L+EI L A A + S G+ ++ Sbjct: 140 ALPVHADRGQCGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPS---DAGRTRAIS 196 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ECL + G TS+EIA +L +S +T N Y+ +K R+ A+A A+R ++ Sbjct: 197 KRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ I Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGI 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a] gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a] Length = 237 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + +IA L IS NTV N+I +I+ K +R A+ YAVR + Sbjct: 174 LTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233 Query: 246 V 246 + Sbjct: 234 L 234 >gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] Length = 165 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W++EGKT EI ++GISR+ V+ ++ S K +R+ A+A R + Sbjct: 104 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 163 Query: 246 V 246 + Sbjct: 164 I 164 >gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora] Length = 240 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + + RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAV 237 Query: 244 NIV 246 ++ Sbjct: 238 GLI 240 >gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 309 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 9/91 (9%) Query: 161 EIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +I L A AN F S D + F+LT RE E L WI++GK++ +I ILG Sbjct: 214 QISYLGAIGANEFLFRLTTENGMSDDETLRQHFQLTPRESEVLLWIAKGKSNRDIGEILG 273 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +S TV ++ I K + R+ A A + Sbjct: 274 LSSRTVTKHLEQIYVKLGVENRASAAVKATQ 304 >gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum CFBP2957] gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum CFBP2957] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ + Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 118 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L ++EG ++ IA LGIS +T ++ S++ K R+ A+A+A R Sbjct: 53 DPGLTPREIEVLGLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAHAAR 112 Query: 243 NNIV 246 ++ Sbjct: 113 RGVI 116 >gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13] Length = 213 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE L + EGK + EIA L +S TV N++ I++K + R+ +A+RN Sbjct: 151 VELTSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAIRN 210 Query: 244 NIV 246 +V Sbjct: 211 GVV 213 >gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++ G+ + EIA L I+ NTV N++ +I+ K +R A+ YAVR Sbjct: 161 KLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRMEAVVYAVREK 220 Query: 245 IV 246 ++ Sbjct: 221 LL 222 >gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621] gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621] gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 189 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA +L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L ++ EG TS+E++ +L IS +TV+ Y+ + K K R +A A R Sbjct: 182 DVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYR 241 Query: 243 NNIV 246 ++ Sbjct: 242 LGLI 245 >gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum] Length = 240 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REV+CL W +EGK++ EIA I+ S TV + ++ +K R AI A+ Sbjct: 176 LTAREVQCLAWAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAI 231 >gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 220 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+ + EIA + +S NT+ +YI S+ RK +R+ A+ + Sbjct: 143 GRAEGLTDREAEILALITQGRGNAEIASMTYLSPNTIKSYIRSVYRKIGVSSRTQAVLWG 202 Query: 241 VRNN 244 V + Sbjct: 203 VHHG 206 >gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 222 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 169 QANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 QAN ++Y + + +LT RE E L +++G T EI V LG+SR+T+ +Y+ I Sbjct: 140 QANRPQAYQPTTDQLMPNVQLTEREREVLLRVAKGFTLPEIGVQLGLSRHTIADYVKQIY 199 Query: 226 RKTATKTRSGAIAYAVR 242 RK +R+ A A R Sbjct: 200 RKLNVSSRAEAALEAQR 216 >gi|123967708|ref|YP_001008566.1| LuxR family regulatory protein [Prochlorococcus marinus str. AS9601] gi|126695511|ref|YP_001090397.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9301] gi|123197818|gb|ABM69459.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. AS9601] gi|126542554|gb|ABO16796.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9301] Length = 92 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 40/58 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ N Sbjct: 16 LSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73 >gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 256 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 R + GL++ + +D L+EI L AA + D G+ ++ RE+EC Sbjct: 147 RGQCGLVVFLGSKMALPQDALYEIHARCFSLFAAVA--RIRPSDA--GRMRAISKRELEC 202 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G TS+EIA +L +S +T N Y+ +K R+ A+A A+R ++ Sbjct: 203 LKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 487 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +++ RE E L ++ G T+ +IA+ L IS NTV ++ +I K ++R+ A YA+ Sbjct: 3 NESQISEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYAI 62 Query: 242 RNNIV 246 RN IV Sbjct: 63 RNGIV 67 >gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 267 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L WI GK++ EI ILGIS TV N++ ++ K R+ A+ A+ ++ Sbjct: 205 ITVREQEILKWIYLGKSNSEIGQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAIEAHL 264 Query: 246 V 246 + Sbjct: 265 I 265 >gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272] gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272] gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273] Length = 189 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA +L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1] gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1] Length = 226 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 30/45 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKK 221 >gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12] gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium DO] gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12] gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|330836949|ref|YP_004411590.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] gi|329748852|gb|AEC02208.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] Length = 299 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 34/50 (68%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +T RE + I+ G+T+ EIA+ L IS NTVNN++A+I KT ++R Sbjct: 237 YHITEREFSVIKLIANGRTNKEIAMELNISTNTVNNHVANIFSKTEVRSR 286 >gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens DSM 7] Length = 214 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + K ++LT RE + L I++GK++ EIA L IS TV ++++++ K R+ A Sbjct: 140 DQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQA 199 Query: 237 IAYAVRNNI 245 YAV+ N+ Sbjct: 200 ALYAVKYNV 208 >gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 109 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 46 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 105 Query: 246 V 246 + Sbjct: 106 I 106 >gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15] gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68] gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6] gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68] gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6] gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 238 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R + Sbjct: 177 LSNRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 236 Query: 246 V 246 + Sbjct: 237 I 237 >gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT REV+ L + EG ++ EIA L IS +T+ +++ +I RK K R+ A ++A R Sbjct: 149 EVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 208 Query: 243 N 243 N Sbjct: 209 N 209 >gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430] gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430] Length = 240 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAA 235 >gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L W + G+ +IA LG+S TV N++ I R+ A T + AI A+RN Sbjct: 176 KLSHREREILAWTAAGRRQADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNG 235 >gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16] gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI----AYAV 241 L+ RE E L +I++G T+ EIA L +SR T+ +++ +I +K A KTR+ AI AY V Sbjct: 178 LSARETEILVFINKGSTNREIADALSLSRLTIESHVKNIYKKLAVKTRTQAIFEARAYGV 237 Query: 242 RN 243 N Sbjct: 238 LN 239 >gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis] Length = 248 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L ++ EG TS+E++ +L IS +TV+ Y+ + K K R +A A R Sbjct: 184 DVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYR 243 Query: 243 NNIV 246 ++ Sbjct: 244 LGLI 247 >gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 359 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ A A+ Sbjct: 290 FKLTAREAEVLYWVVKGKTNKDIGDILGSSPMTVKKHLERVFVKLGVETRTAAAGMAM 347 >gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 233 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 ++ EI L + +M K + DF T RE + L ++EG + EIA LG + V Sbjct: 145 QIEEIKALLTQRGSMIKQNNSGIKIDF--TPREQDVLNLVAEGLMNKEIASRLGTTVRNV 202 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++ + KT T +R+ + YA+ N +V Sbjct: 203 EKYVSRLFGKTGTNSRTELVRYALENGLV 231 >gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] Length = 240 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE +CL+W +EGK++ EIA I+ S TV ++++ +K R AI A+ Sbjct: 175 ELTCREGQCLSWAAEGKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITKAI 231 >gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R + Sbjct: 175 LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 234 Query: 246 V 246 + Sbjct: 235 I 235 >gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] Length = 207 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 145 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 204 Query: 245 I 245 + Sbjct: 205 L 205 >gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D+ L+ RE + L ++ +G EIA +G+S +TVNNY+ I K TR GA+A V Sbjct: 156 DYGLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNYLRRIYDKLHVHTRGGAVAKTVE 215 Query: 243 NNIV 246 ++ Sbjct: 216 EKLL 219 >gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto BEST195] Length = 211 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+EGKT+ EI L I+ TV +I +I+ K R+ A YA RN++ Sbjct: 150 LTKRELEILFLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 237 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + +IA L IS NTV N+I +I+ K +R A+ YAVR + Sbjct: 174 LTDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233 Query: 246 V 246 + Sbjct: 234 L 234 >gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501] gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501] Length = 210 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107] gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107] Length = 225 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G T E+A LGISR+TV +I +I RK A RS A+ A + Sbjct: 162 ELTPRETEILRGIAKGFTYTELAEWLGISRHTVPVHIKNIYRKLAANNRSEAVYEASKRG 221 Query: 245 IV 246 ++ Sbjct: 222 LI 223 >gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 211 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA +L I+ TV ++++++ K R+ A YAV+ + Sbjct: 151 LTKREQEVLREIAQGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGV 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 215 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE++ + I++G ++ EIA +L IS TV NYI+SI++K + R+ Y +N Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIYYYKN 213 >gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] Length = 239 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L W + G+ EIA LG+S TV N++ I ++ T + AI A+RN Sbjct: 177 LSDREREVLAWTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNG 235 >gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] Length = 239 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L W + G+ EIA LG+S TV N++ I ++ T + AI A+RN Sbjct: 177 LSDREREVLAWTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNG 235 >gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 210 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete 8FN] Length = 210 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L ++ GKT+ EIA L IS TV ++ +I+RK R+ A +A R Sbjct: 147 EVPLTAREAEVLKHLTSGKTNKEIANSLTISYETVKEHVQNILRKIGVTDRTQAAVWAFR 206 Query: 243 NNIV 246 IV Sbjct: 207 KGIV 210 >gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 216 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE E L I +G + EIA LG+S +TV++Y+ +I +K + +R+ A A Sbjct: 148 GEFIHLSRRETEVLKEIGDGHKNGEIARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREA 207 Query: 241 VRNNIV 246 +R +V Sbjct: 208 IRRGLV 213 >gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 221 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++GK++ EIA L I+ TV ++++I+ K + R+ A YA+++ Sbjct: 146 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 303 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 170 ANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A++ K D H +LT RE+E L +++G + +IA L IS NTV N++ +I+ K Sbjct: 223 ASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFISENTVKNHVRNILEKL 282 Query: 229 ATKTRSGAIAYAVRNNIV 246 +R A+ YAVR ++ Sbjct: 283 QLHSRMEAVVYAVREKLL 300 >gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans] Length = 210 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 ++R +G L Y H+ K+ L+ RE + L W+ GKT E+AVIL I+ Sbjct: 117 KNRSEIVGFLVNLHQKTLNLYSQHYQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAE 176 Query: 215 NTVNNYIASIMRKTATKTRSGAI 237 TV ++ ++M+K + A+ Sbjct: 177 RTVKFHMGNVMKKLGVNNATHAV 199 >gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 246 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++EG TS +I+ L IS +TV+ Y+ SI K + R +A A RN Sbjct: 184 KLTRREIEVLNHLAEGMTSMDISRTLKISNHTVDWYMNSIQDKLNARNRQHIVAIAFRNG 243 Query: 245 IV 246 +V Sbjct: 244 LV 245 >gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 92 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 EISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70 Query: 243 N 243 N Sbjct: 71 N 71 >gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 245 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E + W + GKT+ + A IL IS +TVN ++AS MRK T++ A+ ++R Sbjct: 183 LSPREREVVAWAAVGKTAWDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRG 241 >gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 217 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ LT + +G ++ +IA L +S +TV +++ SI RK K R A+A+A R Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 237 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + +IA L IS NTV N+I +I+ K +R A+ YAVR + Sbjct: 174 LTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233 Query: 246 V 246 + Sbjct: 234 L 234 >gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W] gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI] gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W] gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 210 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis serovar chinensis CT-43] Length = 200 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA +L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|302337778|ref|YP_003802984.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634963|gb|ADK80390.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 264 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + KD+ L+ RE E + +GKT+ EI L IS TV +IASI RKT + R+ Sbjct: 200 EFAKDYALSPRETEITALLLQGKTNAEICQSLFISLATVKTHIASIFRKTGARNRT 255 >gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 228 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K FE LT RE++ L I++GKT+ EI+ L IS TV ++ +I K +TR+ A+ YA Sbjct: 163 KKFESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYA 222 Query: 241 VRNNIV 246 + I+ Sbjct: 223 MLTGII 228 >gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 221 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++GK++ EIA L I+ TV ++++I+ K + R+ A YA+++ Sbjct: 146 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM 4136] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E + RE E L +++G+++ EIA +LG+S TV ++++++ K + R+ A+ A+R Sbjct: 147 EPSPREREVLAQMAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRG 206 Query: 245 IV 246 ++ Sbjct: 207 LL 208 >gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 218 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG + EIAV+LG+S TV + ++MRK ++ + YA++ I Sbjct: 152 LTPREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDIHNKAQLVTYAIQKKI 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6] gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D ELT RE++ L ++ G ++ EIA L IS +T+ +++ +I RK K R+ A A+A R Sbjct: 149 DIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 208 Query: 243 N 243 N Sbjct: 209 N 209 >gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 92 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 EISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70 Query: 243 N 243 N Sbjct: 71 N 71 >gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia cepacia] Length = 239 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 177 TAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236 >gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 319 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ I K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310 >gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 189 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA +L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTARDREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 221 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++GK++ EIA L I+ TV ++++I+ K + R+ A YA+++ Sbjct: 146 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ YA++ Sbjct: 158 LTSREIEILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIYAIK 214 >gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 47/83 (56%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L A +A D G ELT RE+E L ++ G ++ EIA L ++ TV N++++ Sbjct: 133 VLRAVRAGSVPLDDAAAGDVQELTSRELEILRLLAAGYSNREIAEALHLAEGTVKNHVST 192 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K T+ R+ A+ A+ + ++ Sbjct: 193 VLLKLGTRDRTRAVLRALHHGLL 215 >gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 245 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W ++GK+ EIA +GIS + ++ ++ RK T +R+ A+A +R I Sbjct: 184 LSPRERESLQWAADGKSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLGI 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 242 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ YA++ Sbjct: 164 LTSREIEILDCIARGLSNKEIASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRG 222 >gi|327190926|gb|EGE57980.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 305 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F LT RE E L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 242 FSLTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|190893145|ref|YP_001979687.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698424|gb|ACE92509.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 305 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F LT RE E L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 242 FSLTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 234 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G + +IA L IS NTV N+I +I+ K +R A+ YAVR + Sbjct: 171 LTDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 230 Query: 246 V 246 + Sbjct: 231 L 231 >gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D ELT RE++ L ++ G ++ EIA L IS +T+ +++ +I RK K R+ A A+A R Sbjct: 158 DIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 217 Query: 243 N 243 N Sbjct: 218 N 218 >gi|330961628|gb|EGH61888.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 77 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71 >gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 243 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ +LT RE E L W ++GKT+ EI++IL I+ TV ++ RK R+ A+A A Sbjct: 176 GRRNKLTARECEILQWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAKA 235 Query: 241 VRNNIV 246 + ++ Sbjct: 236 LTLGLI 241 >gi|262204346|ref|YP_003275554.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087693|gb|ACY23661.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 213 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 40/60 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE + I+EG ++ +IA L +S +TV +I I+ KTA + R+ ++YA R+++ Sbjct: 153 LTEREVEVIALIAEGLSNQQIATRLVVSLSTVKTHINHILAKTACRDRAALVSYAFRHHL 212 >gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] Length = 253 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +DF L+ REVE L WI+ GK++ IA ILGIS +TV+ + I K R+ A Sbjct: 181 RDFGLSPREVEVLEWIATGKSNGVIAEILGISPHTVDTIVRRIFAKLDVNDRTTA 235 >gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 240 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + D SL + + G + PK G++I + R L E G + Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158 Query: 166 AAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A K V + G++ LT RE E L ++EGK++ I L IS TV N+++S Sbjct: 159 AEGHT---KEAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSS 215 Query: 224 IMRKTATKTRSGAIAYAVR 242 I++K R+ A+ +++ Sbjct: 216 ILQKMEVDDRTQAVINSIK 234 >gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900] Length = 319 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ I K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310 >gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 97/252 (38%), Gaps = 36/252 (14%) Query: 11 VLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEY 55 V+N D R V+ + +RSDL R+I + + R+ E Sbjct: 8 VMNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCELEN 67 Query: 56 VGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 G+S+ F D + + LD I S P LS + P + F P Sbjct: 68 WGSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAPFM 118 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEI-GLLAAYQA 170 L + I P + L F V +G + G I D + E+ G Sbjct: 119 TRLRDGILP-------FSGLAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMM 171 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 231 Query: 231 KTRSGAIAYAVR 242 R AIA A+R Sbjct: 232 VNRIQAIAKAIR 243 >gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ + Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I GK++ EIA +L +S NTV + A+IM+ + + YA+R + Sbjct: 147 LTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHRANIMQTLGIHNTAELVVYAIRQGL 206 Query: 246 V 246 V Sbjct: 207 V 207 >gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 226 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E +T ISEG T+ IA L +S +T+N + +IM K K +G + YAV+ N+ Sbjct: 153 LSERETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAGIVIYAVKTNL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 251 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + D L E+ LLA +Q +F +D + + L+ RE ECLTW +EG T+ EIA L Sbjct: 155 IHDVLAELSLLALTFQECVFPLFDSSILTCRHVRLSKRERECLTWAAEGLTAKEIARKLN 214 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S TV ++ + RK R A+ A+ Sbjct: 215 RSIATVTLHLNTAARKLGASNRVQAVVRAMH 245 >gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] Length = 215 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE++ + I++G ++ EIA +L IS TV NYI+SI++K + R+ Y +N Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIYYYKN 213 >gi|297531030|ref|YP_003672305.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254282|gb|ADI27728.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 200 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT E+ L I+ KT+ EI L IS+ TV ++++SI+RK K+R+GA+ A R Sbjct: 139 LTDMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFR 195 >gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 204 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 142 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201 Query: 245 I 245 + Sbjct: 202 L 202 >gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L] gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 222 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I+ GK++ ++A L IS TV N+++ IM+K + R+ A+ +A+R + Sbjct: 155 LSQRELEVLSRIARGKSTAQVARELYISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L +S GK +D+IA L IS TV +I I++K + R+ A+A A+R Sbjct: 173 QLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQAVAKAIRYK 232 Query: 245 IV 246 IV Sbjct: 233 IV 234 >gi|332525737|ref|ZP_08401884.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109294|gb|EGJ10217.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 326 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ Sbjct: 259 LELTAREAEVLYWVVQGKTNRDIGDILGTSHRTVTKHLEHVFEKLGVETRT 309 >gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 306 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 245 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 301 >gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 248 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 187 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243 >gi|239816122|ref|YP_002945032.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802699|gb|ACS19766.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 302 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L+W+++GKT+ +I ILG S TVN ++ I K +TR Sbjct: 243 LTPRETEVLSWLAKGKTNRDIGEILGTSPRTVNKHLEHIFEKLGVETR 290 >gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 262 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE E L +++ G S EI+V LGIS TVN +I +I +K +R+ A++ A Sbjct: 198 REATLTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVHSRAQAVSLAT 257 Query: 242 RNN 244 Sbjct: 258 HTG 260 >gi|317404677|gb|EFV85070.1| hypothetical protein HMPREF0005_04072 [Achromobacter xylosoxidans C54] Length = 515 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L + +G D IA L +SRNTV N++A+I K RS AI +A Sbjct: 440 QLTAREREVLGLLCQGHDDDGIARQLRLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRG 499 Query: 245 IV 246 I Sbjct: 500 IT 501 >gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 251 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E ++W +EGK+ IA ILG+S +TV ++ ++ +K R+ A A+R+ + Sbjct: 185 LTEREKEIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLATVKAIRHGL 244 Query: 246 V 246 + Sbjct: 245 I 245 >gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L +++G T+ EIA +S TV N++++I+ + + R+ A YAV Sbjct: 152 DTPLTTRELEVLKLLAKGNTNKEIAKAFNLSEGTVKNHVSNILMRLGLRDRTQAAVYAVE 211 Query: 243 NNI 245 + + Sbjct: 212 HGL 214 >gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 204 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 142 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201 Query: 245 I 245 + Sbjct: 202 L 202 >gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 204 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 142 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201 Query: 245 I 245 + Sbjct: 202 L 202 >gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 237 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 34/48 (70%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 D ELT REVE L W+++GKT+ EI++I+ IS TVN ++ + + K T Sbjct: 173 DIELTDREVEVLKWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNT 220 >gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 132 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 70 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 129 Query: 245 I 245 + Sbjct: 130 L 130 >gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 232 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L ++ G+T+ EIA L ISR T +++ +I+RK R+ A+A A Sbjct: 161 ELTAREREVLVLMARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARA 216 >gi|253991535|ref|YP_003042891.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638413|emb|CAR67035.1| transcriptional regulator of sqaz gene cluster [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782985|emb|CAQ86150.1| putative transcriptional regulator [Photorhabdus asymbiotica] Length = 236 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 14/98 (14%) Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGR 189 F VAR +G I + L + G+L K+++ K+ + L+ R Sbjct: 128 FSVAR---------KEGPISHNEILNKAGMLGILANECIKTFNNLKNKEDKIIVPTLSTR 178 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 EVE + W EGKTS EIA IL IS TVN +I +IM K Sbjct: 179 EVEVIRWTCEGKTSAEIANILDISTRTVNFHINNIMEK 216 >gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ LT + +G ++ +IA L +S +TV +++ SI RK K R A+A+A R Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] Length = 232 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L W +EGKT+ E ++IL IS TV +I + ++K T ++ A+ AV Sbjct: 171 LTPREIEILKWSAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAV 226 >gi|118592081|ref|ZP_01549475.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118435377|gb|EAV42024.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 257 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 W +LTGRE + L +SEGK EIA+ L IS TV +++ ++ +K+ +R+ +A Sbjct: 190 WAARHQLTGREQDVLCLVSEGKRDREIALDLNISVTTVRSHLKAVFQKSGVTSRAELLA 248 >gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] Length = 214 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D ELT RE++ L ++ G ++ EIA L IS +T+ +++ +I RK K R+ A A+A R Sbjct: 153 DIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 212 Query: 243 N 243 N Sbjct: 213 N 213 >gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG ++ EI L IS TV N+I SI RK R+ A+ +A+R Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214 >gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 211 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE+ + EGKT+ EIA L +S TV N+I I++K + R+ YA++ Sbjct: 147 DIPLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIK 206 Query: 243 NNI 245 ++I Sbjct: 207 HDI 209 >gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis] gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis] Length = 277 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 41/66 (62%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE+E L W+ GKT+ EI I+ +S T+ N++ +I+RK + RS A + A Sbjct: 208 GRIKPLSKRELEVLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRSQAASKA 267 Query: 241 VRNNIV 246 ++ ++ Sbjct: 268 LKLGLI 273 >gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L +++G T EI V LG+SR+T+ +Y+ I RK +R+ A A R Sbjct: 152 QLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAALEAQR 209 >gi|311108335|ref|YP_003981188.1| sensory box protein 10 [Achromobacter xylosoxidans A8] gi|310763024|gb|ADP18473.1| sensory box protein 10 [Achromobacter xylosoxidans A8] Length = 497 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L + +G D IA L +SRNTV N++A+I K RS AI +A Sbjct: 422 QLTSREREVLGLMCQGHDDDSIARQLKLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRG 481 Query: 245 IV 246 I Sbjct: 482 IT 483 >gi|144899411|emb|CAM76275.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 189 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W ++GKT+ E + ILGIS TV ++ + RK T++ I A R + Sbjct: 127 LTAREREVLLWAAQGKTAWETSAILGISSKTVEFHLGNCGRKLGAATKAQTILAAARRGL 186 Query: 246 V 246 + Sbjct: 187 L 187 >gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 225 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 180 WGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 GKD LT R+ + LT I+ G T+ +IA L IS T+ N++++I+RK R+ Sbjct: 152 LGKDASNFVTPLTNRKKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRA 211 Query: 235 GAIAYAVR 242 A+ A+R Sbjct: 212 HAVVVAIR 219 >gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 236 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+GRE+E L + EG ++ EIA L +S NTV ++ IM K A R A A Sbjct: 171 GNTANLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVA 230 Query: 241 VRNNIV 246 +R+ +V Sbjct: 231 LRSGLV 236 >gi|312888670|ref|ZP_07748238.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311298837|gb|EFQ75938.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 313 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F+LT E+ + +I +GK++ EIA ++ IS NTV ++ ++ RK K+R+ A+ Y ++ Sbjct: 248 HFDLTRTEILIIQYIYKGKSNKEIADLMSISENTVKKHLQNVYRKVNVKSRA-ALIYTLQ 306 Query: 243 NN 244 N+ Sbjct: 307 NH 308 >gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R + Sbjct: 180 LSTRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase [Acinetobacter calcoaceticus PHEA-2] Length = 319 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ I K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310 >gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 218 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG ++ EI L IS TV N+I SI RK R+ A+ +A+R Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214 >gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 42/80 (52%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G A A+M + + K L+ RE+ CL +G S+EIA +G+S +TVN Y+ Sbjct: 162 GRCAQVMADMLAADERRLFKGESLSDREIACLQMAGDGYISEEIAEKMGLSVHTVNAYLG 221 Query: 223 SIMRKTATKTRSGAIAYAVR 242 + K + R AIA A+R Sbjct: 222 AATTKLDSVNRIQAIAKAIR 241 >gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 210 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ + Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa E681] Length = 240 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + D SL + + G + PK G++I + R L E G + Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158 Query: 166 AAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A K V + G++ LT RE E L ++EGK++ I L IS TV N+++S Sbjct: 159 AEGHT---KEAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSS 215 Query: 224 IMRKTATKTRSGAIAYAVR 242 I++K R+ A+ +++ Sbjct: 216 ILQKMEVDDRTQAVINSIK 234 >gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 68 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE E + I+EG T+ EIAVIL IS TV Y+ +IM K +R IA+ +N Sbjct: 5 KLSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIAWYYKN 63 >gi|296447080|ref|ZP_06889013.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296255425|gb|EFH02519.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 306 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK F LT RE E ++WI+ GK++ +IA IL IS TV+ ++ I K +RS A + A Sbjct: 238 GK-FALTSREAEVVSWIARGKSNVDIAEILCISPRTVHKHLERIFIKLGVDSRSSATSVA 296 Query: 241 VR 242 ++ Sbjct: 297 LQ 298 >gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 211 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H+ D +LT RE+E L I++GK++ EIA L I+ TV ++++I+ K + R+ A Sbjct: 143 HFPHD-DLTQRELEVLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATI 201 Query: 239 YAVRNNIV 246 YA ++ ++ Sbjct: 202 YAFKHQLI 209 >gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 211 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE+ + EGKT+ EIA L +S TV N+I I++K + R+ YA++ Sbjct: 147 DIPLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIK 206 Query: 243 NNI 245 ++I Sbjct: 207 HDI 209 >gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 187 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243 >gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ + Sbjct: 187 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 246 Query: 246 V 246 V Sbjct: 247 V 247 >gi|66044947|ref|YP_234788.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255654|gb|AAY36750.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 238 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 36/52 (69%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ Sbjct: 174 ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 225 >gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 229 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ E+A I +S NTV +YI ++ RK +RS A+ + Sbjct: 151 GRGEGLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIRTLYRKIGVTSRSQAVLWG 210 Query: 241 VRNN 244 V + Sbjct: 211 VNHG 214 >gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum V4] gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum V4] Length = 251 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L WI +GKT+ EI+ IL IS TV ++ +I K + R A+A A + Sbjct: 189 LTARELEILKWIMDGKTNWEISCILKISEATVKFHLKNIFLKLDVQNRCQAVATAFHRRL 248 Query: 246 V 246 + Sbjct: 249 L 249 >gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 212 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G AA + N S G+ LT RE E L +++G ++ E+A L IS TV + A Sbjct: 130 GNAAAQERNTVVS---RGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRA 186 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++MRK + + YA+RN IV Sbjct: 187 NVMRKLGASSIVDLVHYAIRNGIV 210 >gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] Length = 214 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ L + EG ++ EIA L IS +T+ +++ +I RK K R+ A ++A R Sbjct: 153 EVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 212 Query: 243 N 243 N Sbjct: 213 N 213 >gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 240 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 179 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 235 >gi|26988850|ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gi|24983655|gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT R++E L I GK++ EIA LG+S TV + + IM++ +G + +A Sbjct: 150 GERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFA 209 Query: 241 VRNNIV 246 VR I+ Sbjct: 210 VREKII 215 >gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti] gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a heterodimer with VisN [Sinorhizobium meliloti 1021] gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 8/79 (10%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LLAA + +FK+ L+ RE+ CL +G S+EIA +G+S +TVN Y+ + Sbjct: 171 LLAADEKRLFKAE--------ALSDREIACLQMAGDGHISEEIAEKMGLSVHTVNAYLGA 222 Query: 224 IMRKTATKTRSGAIAYAVR 242 K + R AIA A+R Sbjct: 223 ATTKLDSVNRIQAIAKAIR 241 >gi|325264809|ref|ZP_08131538.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] gi|324030101|gb|EGB91387.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] Length = 198 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K D+ K T RE E W+ +GK++ +IA IL +S +TV ++++I ++R Sbjct: 117 KESDMKILKGHGFTEREAEVTYWLCQGKSNGDIAYILNLSVSTVKKHLSNIFDNMGVRSR 176 Query: 234 SGAIAYAVR 242 S A+A A+ Sbjct: 177 SAAVALALE 185 >gi|293607167|ref|ZP_06689509.1| LuxR family sensory box transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814501|gb|EFF73640.1| LuxR family sensory box transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 508 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L + +G D IA L +SRNTV N++A+I K RS AI +A Sbjct: 433 QLTTREREVLGLLCQGHDDDGIAKALKLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRG 492 Query: 245 IV 246 I Sbjct: 493 IT 494 >gi|261419001|ref|YP_003252683.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765817|ref|YP_004131318.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375458|gb|ACX78201.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110683|gb|ADU93175.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 200 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT E+ L I+ KT+ EI L IS+ TV ++++SI+RK K+R+GA+ A R Sbjct: 139 LTEMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFR 195 >gi|330975157|gb|EGH75223.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 95 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 36/52 (69%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ Sbjct: 31 ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 82 >gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] Length = 199 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 137 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196 Query: 245 I 245 + Sbjct: 197 L 197 >gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] Length = 199 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 137 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196 Query: 245 I 245 + Sbjct: 197 L 197 >gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] Length = 185 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241 +L+ REVE L W+++GKT + I +LG++ TV ++ +IM+K AT + A+ A+ Sbjct: 124 KLSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKAAL 181 >gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + +LT RE+E LT ++ G+ + EIA L IS TV ++A+I K +R+ A+A A Sbjct: 158 AQRVDLTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVDSRASAVAVA 217 Query: 241 VRNNIV 246 ++ ++ Sbjct: 218 MKRGLL 223 >gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 218 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 13/104 (12%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G ++L P+ + R + E G A +A+ ++S LT RE + L ++EG++ Sbjct: 124 GGLVLDPE---VARTAMEEAGPAAPGEADPYES----------LTDREKQVLKLVAEGRS 170 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + E+A +LGIS T ++ +M K R+ + +A+R ++ Sbjct: 171 NKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGVI 214 >gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 218 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ L + EG ++ EIA L IS +T+ +++ +I RK K R+ A ++A R Sbjct: 157 EVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 216 Query: 243 N 243 N Sbjct: 217 N 217 >gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 44/76 (57%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ +S D + LT RE E LT+I+ G ++ +IA+ LG+S T++N+ S+MRK Sbjct: 119 SVVRSIDRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSMMRKLDL 178 Query: 231 KTRSGAIAYAVRNNIV 246 + YAV + IV Sbjct: 179 HNVADITRYAVEHRIV 194 >gi|148548821|ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|148512879|gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 219 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT R++E L I GK++ EIA LG+S TV + + IM++ +G + +A Sbjct: 150 GERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFA 209 Query: 241 VRNNIV 246 VR I+ Sbjct: 210 VREKII 215 >gi|330973646|gb|EGH73712.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 237 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 36/52 (69%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ Sbjct: 173 ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 224 >gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] Length = 245 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 13/145 (8%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 YN++ T + H + D+ Y + ++ + +I ++L+ + Sbjct: 104 YNIINGYTFVLHDNNHNMATLNISNGNDDSIYFDESIEINKEKIQMLLILTHDK------ 157 Query: 159 LWEIGLLAAYQANMFKSYDV-HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNT 216 +L YQ N ++ ++ + E+ + RE E L W S GKT EIA+ILGI R+T Sbjct: 158 -----MLGLYQKNNNENKELGRSAAEREIFSPRENEILYWASVGKTYSEIAIILGIKRST 212 Query: 217 VNNYIASIMRKTATKTRSGAIAYAV 241 V +I +++RK AI + Sbjct: 213 VKFHIGNVVRKLGVLNAKHAIRLGI 237 >gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA L IS+ TV Y++ I+ K + R A+ YA R + Sbjct: 158 LTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 298 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE + L W+S GKT+ EIA IL +S TVN ++ I +K R+ A + ++ Sbjct: 235 RELNLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNKHLEQIYKKLNVDNRTAAASISL 294 Query: 242 R 242 R Sbjct: 295 R 295 >gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 210 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ + Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|4928929|gb|AAD33777.1|AF139177_4 putative two component response regulator [Streptomyces lividans] Length = 199 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G + LT RE+ LT S+G EIA L +SR TV NY+A+ +RK + R AI Sbjct: 134 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 190 >gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans] Length = 210 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 218 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 13/104 (12%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G ++L P+ + R + E G A +A+ ++S LT RE + L ++EG++ Sbjct: 124 GGLVLDPE---VARTAMEEAGPAAPGEADPYES----------LTDREKQVLKLVAEGRS 170 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + E+A +LGIS T ++ +M K R+ + +A+R ++ Sbjct: 171 NKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGVI 214 >gi|325570549|ref|ZP_08146275.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus ATCC 12755] gi|325156395|gb|EGC68575.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus ATCC 12755] Length = 202 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 166 AAYQANMFKSYDVHWGKDFELTGR-EVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 Y N + KD L E + L IS+ +T+++IA L ISR TV N+++SI Sbjct: 120 TVYHGNKVSPEHLFLEKDMRLLSEIERQVLELISQEQTNEKIAKKLFISRRTVENHVSSI 179 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K +TR GA+ ++ N++ Sbjct: 180 CNKLNVQTRIGAVREGIKLNLI 201 >gi|289679330|ref|ZP_06500220.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] gi|330901245|gb|EGH32664.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 237 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 36/52 (69%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ Sbjct: 173 ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 224 >gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 229 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K ++ A+ A Sbjct: 168 LTDREVEVLKWAADGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRAT 223 >gi|256392814|ref|YP_003114378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359040|gb|ACU72537.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 525 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L ++ G ++ EIA L ISR TV++++ I KT T R+ A YAVR+ + Sbjct: 462 LTRREVQVLRLLARGLSNGEIAEQLVISRKTVSHHVEHIYAKTGTANRAMAGLYAVRHGL 521 Query: 246 V 246 + Sbjct: 522 M 522 >gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 196 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 134 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 193 Query: 245 I 245 + Sbjct: 194 L 194 >gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri] Length = 250 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R +I+ A+ Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAI 238 >gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 219 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++EG+++ EIA +L +S TV ++ I+ K + R+ A+ +A R Sbjct: 151 QLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVKRILSKLGVRDRTQAVVWAYRAG 210 Query: 245 IV 246 V Sbjct: 211 FV 212 >gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 216 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 37/58 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L I++G+++ EIA +L I+ TV ++++I+ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNILAKLEVDDRTQAALYAVKH 208 >gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE E L I G+ + EIA LG+S +TV++Y+ +I +K + +R+ A A Sbjct: 165 GEFIHLSRRETEVLKEIGTGQRNGEIARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREA 224 Query: 241 VRNNIV 246 +R +V Sbjct: 225 IRRGLV 230 >gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kronotskyensis 2002] gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 211 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 165 LAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +A Y +++ K + ++ K LT RE+E IS+G ++ EIA +L IS TV NYI S Sbjct: 130 IALYISDVLKRTSKQYFEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITS 189 Query: 224 IMRKTATKTRSGAIAY 239 I++K K R+ Y Sbjct: 190 ILQKLNLKNRTQIAVY 205 >gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102] gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102] Length = 91 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 NISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70 Query: 243 N 243 N Sbjct: 71 N 71 >gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 195 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++GK + EI + IS TV+ ++ +I RK +TR+ A+ YAV Sbjct: 134 KLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKG 193 Query: 245 IV 246 I+ Sbjct: 194 II 195 >gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] Length = 218 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L IS+G + +I+ L I+ TV N+++SI RK R+ A +AV+N Sbjct: 151 LTKREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQAAVFAVKN 208 >gi|256783866|ref|ZP_05522297.1| two-component system response regulator [Streptomyces lividans TK24] Length = 194 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G + LT RE+ LT S+G EIA L +SR TV NY+A+ +RK + R AI Sbjct: 129 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 185 >gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC BAA-2158] Length = 240 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA Sbjct: 183 RELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAA 235 >gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++ G+ S EIA LGIS TV +++ SI K +R+ A+A + Sbjct: 159 ELTERECEVLEAVARGERSKEIASRLGISLRTVGSHLTSIYSKLGVDSRASAVATGIERG 218 Query: 245 IV 246 ++ Sbjct: 219 LL 220 >gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114] gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] Length = 250 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D LT RE ECL W SEGK++ +I+ ILG S TV ++ + K T R +I+ A+ Sbjct: 180 DSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNRCQSISKAI 238 >gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K ELT RE E L I +GKT+ +IA L I TV +++ I+ K + R+ A YA Sbjct: 143 KHEELTNREREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAAIYAN 202 Query: 242 RNNI 245 +N + Sbjct: 203 KNKL 206 >gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] Length = 252 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R +I+ A+ Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAI 240 >gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 208 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE+E L +S+G ++ EIA L IS TV +I +I+ K K R+ A+ A++ Sbjct: 142 DSDLTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALK 201 Query: 243 NNI 245 + Sbjct: 202 KGL 204 >gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri] gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri] gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt] gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105] gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106] Length = 250 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R +I+ A+ Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAI 238 >gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 EVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232 >gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806] gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 210 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I EGK++ EIA L +S NT+ ++ IM K A R A A+R+ I Sbjct: 150 LSEREMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGI 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|289767748|ref|ZP_06527126.1| two-component system response regulator [Streptomyces lividans TK24] gi|289697947|gb|EFD65376.1| two-component system response regulator [Streptomyces lividans TK24] Length = 202 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G + LT RE+ LT S+G EIA L +SR TV NY+A+ +RK + R AI Sbjct: 137 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 193 >gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 234 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA L +S TV +I ++ KTA + R+ A+AYA R+ I Sbjct: 171 LTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTAVRDRAQAVAYAFRHGI 230 >gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294] gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056] gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058] gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059] gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294] gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 319 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 264 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E W +EGK +IA ILGI+ TV ++ +++ K ++S AI++A++ + Sbjct: 188 LSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGM 247 Query: 246 V 246 V Sbjct: 248 V 248 >gi|315646683|ref|ZP_07899799.1| two-component response regulator yhcZ [Paenibacillus vortex V453] gi|315277889|gb|EFU41212.1| two-component response regulator yhcZ [Paenibacillus vortex V453] Length = 213 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE L I+ G+++ EIAV L I+ TV +I I+ K + R+ A YA+RN+ Sbjct: 151 LTKREQHVLEQITMGRSNKEIAVELHITEKTVKTHITHILGKMEVQDRTQAALYAIRNH 209 >gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 251 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 190 LSDREIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 246 >gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 211 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 41/64 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ + I EG+++ EIA+ L +S TV N+I+ I+ K + R+ YA++ Sbjct: 148 DPSLTPRELDIIRKIGEGRSNKEIAMQLSLSVGTVKNHISIILDKLELRDRTQIAIYAIK 207 Query: 243 NNIV 246 +++V Sbjct: 208 HHVV 211 >gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435] gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 207 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K + R+ A YA+ N Sbjct: 146 KLSKREIEVLAEMVKGKTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENK 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum] Length = 236 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ + Sbjct: 176 LTTREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624] gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624] Length = 319 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ LT++ +G ++ EI L IS TV N+++SI RK A + R+ A AV+ + Sbjct: 149 LSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1710b] gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] Length = 394 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A Sbjct: 333 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 392 Query: 245 IV 246 ++ Sbjct: 393 LI 394 >gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter winogradskyi Nb-255] Length = 241 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%) Query: 154 ILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 ILR +L I + A +A +K V+ LT RE++ L W++EGK+ EI+VIL Sbjct: 152 ILRGQLQLIAMYAFARALGQKYKPAPVN------LTPREMDILQWMAEGKSDWEISVILK 205 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S + V+ + K R+ +A A+R+N++ Sbjct: 206 VSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLI 240 >gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8] gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8] Length = 215 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ REV+ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 150 ELSEREVQILRLVAQGYTNQEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209 Query: 245 IV 246 + Sbjct: 210 LA 211 >gi|32141311|ref|NP_733711.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|432994|gb|AAA21390.1| potential response regulator for aerial mycelium production [Streptomyces coelicolor A3(2)] gi|24413915|emb|CAD55386.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 202 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G + LT RE+ LT S+G EIA L +SR TV NY+A+ +RK + R AI Sbjct: 137 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 193 >gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 242 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 EK + Y V++RP H L + P G++ +++ ARI P+ R+ Sbjct: 101 EKGERYRVVRRPAGAG---VHGLQLPVFGPQGLEG---AMSLGGARIDSS-----PEARL 149 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +L + AA+ +L+ RE E L W + G +IA LG+S Sbjct: 150 ML-----AMVATAAFHTARRLLQPPLAASATQLSAREREVLRWTAAGSRQADIAATLGLS 204 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 TV N++ + R+ T + AI A+ N Sbjct: 205 ERTVENHLRAARRRLGVATTAQAIKIALHNG 235 >gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606] Length = 319 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium intracellulare ATCC 13950] Length = 218 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ LT I +G ++ EIA L IS TV ++I I K + R+ AI YA N Sbjct: 154 ELTTRELDVLTLIGQGLSNTEIAGKLCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNG 213 Query: 245 IV 246 IV Sbjct: 214 IV 215 >gi|218515979|ref|ZP_03512819.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 209 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F LT RE E L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 146 FSLTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 202 >gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1] gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1] Length = 319 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|238064601|ref|ZP_04609310.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886412|gb|EEP75240.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 225 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QA + S VH + LT RE E + ++EG ++ +IA LGIS + +AS+M K Sbjct: 150 QARVELSTPVHPAR---LTARESEAMGLMAEGMSNKQIAGRLGISSHGAKRLVASLMLKL 206 Query: 229 ATKTRSGAIAYAVRNNIV 246 + R+ A+ A+++ +V Sbjct: 207 GSPNRTAAVVNAIKSGLV 224 >gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU] gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter baumannii 1656-2] gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 319 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25] gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25] Length = 210 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ L + EG ++ EIA L IS +T+ +++ +I RK K R+ A ++A R Sbjct: 149 EVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWARR 208 Query: 243 N 243 N Sbjct: 209 N 209 >gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 226 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +LA Y+ + S D ELT RE++ L I G ++ EI LGIS TV +++ Sbjct: 137 VLATYR-TVAPSSDGGRNHLTELTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGH 195 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K + R+ AI YA + IV Sbjct: 196 IFLKLDLRDRAAAIVYAFDHGIV 218 >gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 255 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 168 YQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 ++AN F + K FE LT REVE L I++GK S E+A L IS TV+ +I +I Sbjct: 177 FKAN-FHEESIFKHKSFESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYG 235 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +TR+ A+ A+ I+ Sbjct: 236 KMQVRTRAQAVRCAILIGII 255 >gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 14/192 (7%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 E VG + L + + Q+ D I+ D ++ +A +E+ L+RP L F Sbjct: 32 ELVGEAENGLSALQIAESQEPDVILM-DIRMPVLDGIAATER-VLQQALKRPRILLLTTF 89 Query: 114 HTLPENITPP--AGMDN---RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 T PE + AG + CS IR +G+I+L+ LLA+ Sbjct: 90 DT-PELVIEGMRAGASGYLLKDCSAEELCTAIRA-----VARGQILLQAS-SAAQLLASL 142 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q + + + LT RE+E L ++ G+++ EIA L +S TV +I I K Sbjct: 143 QTKPVAAAPLSVAEQLGLTTRELEVLRLVTLGQSNTEIAAALFVSDATVKTHINHIFSKL 202 Query: 229 ATKTRSGAIAYA 240 + RS AI A Sbjct: 203 GARNRSQAIIKA 214 >gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 319 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L ++ G+ S EIA LGIS TV ++ SI K +R+ A+A A+ Sbjct: 169 EGELSERELEVLRKVASGERSKEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVAVALE 228 Query: 243 NNIV 246 ++ Sbjct: 229 RGLL 232 >gi|262225461|ref|YP_003280952.1| pCQ3_103 [Streptomyces sp. W9] gi|261597637|gb|ACX85604.1| pCQ3_103 [Streptomyces sp. W9] Length = 113 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +T R+++ L I+ G T+ IA LGIS NTV +ASI RK R+ A+A A+R Sbjct: 28 YTVTRRQLDILRLIANGNTTTAIARRLGISYNTVTKQVASIHRKLRVSDRAQAVAVALR 86 >gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 224 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217 >gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 224 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217 >gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 224 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217 >gi|330888767|gb|EGH21428.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 74 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + + Sbjct: 14 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSGV 73 >gi|320322629|gb|EFW78722.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str. B076] Length = 77 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + + Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSGV 76 >gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 98/252 (38%), Gaps = 36/252 (14%) Query: 11 VLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEY 55 ++ ++ RT V+ + +RSDL R+I + + R+ E Sbjct: 8 TMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGLPAKQRLVCELEN 67 Query: 56 VGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 G+S+ F D + + LD I S P LS Y P + F P Sbjct: 68 WGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FSPFM 118 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEI-GLLAAYQA 170 L + I P + L F V +G + G I D + E+ G Sbjct: 119 TRLQDGILP-------FSGLAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMM 171 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDS 231 Query: 231 KTRSGAIAYAVR 242 R AIA A+R Sbjct: 232 VNRIQAIAKAIR 243 >gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis] gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 161 EIGLLAA-YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 +I LLA + A + K D G LT RE E L W + GK+ E AVILGIS TV Sbjct: 153 DIHLLAGKFHAGLVKRCDGTRLGGVPTLTRREQETLRWTAAGKSYWETAVILGISERTVR 212 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++A+ K + + A+A A++ ++ Sbjct: 213 YFMANARTKLDAVSNTQAVAKALQRGLI 240 >gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 214 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G + LT E++ L I+EGKT++EIA I +S T+ ++ I +K R A+A A Sbjct: 149 GAEHNLTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLEVGNRMEAVAVA 208 Query: 241 VRNNIV 246 + NI+ Sbjct: 209 RKKNII 214 >gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 187 LSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243 >gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] Length = 208 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +++GKT+ EIA L I+ TV ++++++ K + R+ A+ YA ++ Sbjct: 146 ELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHK 205 Query: 245 I 245 + Sbjct: 206 L 206 >gi|290955466|ref|YP_003486648.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260644992|emb|CBG68078.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 342 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + L+ RE+E LT + G T+ IA L +S TV+ ++ ++RKT +R+ A A AVR+ Sbjct: 263 YGLSPRELEVLTRAATGMTNQAIAQALFLSPRTVHTHVEHLLRKTGAASRAEATALAVRD 322 Query: 244 NIV 246 ++ Sbjct: 323 GLL 325 >gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10] gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10] gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis] gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D106004] gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D182038] gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 245 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 9/116 (7%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 D+ + + +V + +I ++L+F + D++ + + ++ N + K Sbjct: 132 DSIFFDESIEVNKEKIQMLLIF------IHDKMLGLYNKSHHENNTLNKKE---NKREIF 182 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+ILGI ++TV +I +I+RK AI + Sbjct: 183 SPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIE 238 >gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51] gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 214 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ LT++ +G ++ EI L IS TV N+++SI RK A + R+ A AV+ + Sbjct: 151 LSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKL 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42] gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42] Length = 214 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I++GK++ EIA L IS TV ++++++ K R+ A YAV+ N Sbjct: 148 QLTPREKDVLQEIAKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYN 207 Query: 245 I 245 + Sbjct: 208 V 208 >gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 244 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT RE ECL W +EGKT EIA I+ IS TV ++ + ++K R AI+ A+ Sbjct: 174 KKANLTEREQECLLWAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRAL 233 Query: 242 RNNIV 246 ++ Sbjct: 234 SMGLI 238 >gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 242 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 45/83 (54%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ Y N +S + + LT RE E L+W ++GKT+ EI++IL I+ TV ++ Sbjct: 158 LIGVYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIE 217 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 RK R+ A+A A+ ++ Sbjct: 218 ASRKLNAVNRTAAVAKALSLGLI 240 >gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 225 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+GRE+E L + EG ++ EIA L +S NTV ++ IM K A R A A Sbjct: 160 GNTANLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVA 219 Query: 241 VRNNIV 246 +R+ +V Sbjct: 220 LRSGLV 225 >gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 227 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N++++I++K K R+ A+ A++N Sbjct: 164 LTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLKVKDRTQAVVTAIKNG 222 >gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 EVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229 >gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 257 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 194 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 248 >gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 96 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A Sbjct: 30 GAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKA 89 Query: 241 VR 242 +R Sbjct: 90 IR 91 >gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 241 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG+++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 179 LTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRTQAVIIAIKNG 237 >gi|167032675|ref|YP_001667906.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859163|gb|ABY97570.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 219 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT R++E L I GK++ EIA LG+S T+ + + IM++ +G + +A Sbjct: 150 GERHNLTARQLEILRLIVRGKSTREIATGLGLSIKTIETHRSQIMKRLQIHDVAGLVLFA 209 Query: 241 VRNNIV 246 VR I+ Sbjct: 210 VREKII 215 >gi|78778542|ref|YP_396654.1| LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712041|gb|ABB49218.1| transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 92 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 40/58 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ N Sbjct: 16 LSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73 >gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 82 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L W + GK+S EI IL +TVN ++++I+RK TR A+ A+R Sbjct: 19 LTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFDVPTRVAAVIKAIR 75 >gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 98/252 (38%), Gaps = 36/252 (14%) Query: 11 VLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEY 55 ++ ++ RT V+ + +RSDL R+I + + R+ E Sbjct: 8 TMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGSGLPAKQRLVCELEN 67 Query: 56 VGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 G+S+ F D + + LD I S P LS Y P + F P Sbjct: 68 WGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FSPFM 118 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEI-GLLAAYQA 170 L + I P + L F V +G + G I D + E+ G Sbjct: 119 TRLQDGILP-------FSGLAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMM 171 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDS 231 Query: 231 KTRSGAIAYAVR 242 R AIA A+R Sbjct: 232 VNRIQAIAKAIR 243 >gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GRE+E L ++ G + EIA +L ++ TV N++++++ K T+ R+ A+ A+ + Sbjct: 153 ELSGRELEVLRLLAAGYANREIAQVLVLAEGTVKNHVSNVLLKLGTRDRTRAVLRALHHG 212 Query: 245 IV 246 ++ Sbjct: 213 LL 214 >gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942] gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus atrophaeus 1942] Length = 211 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EGKT+ EI L I+ TV ++ +I+ K R+ A YA RN + Sbjct: 150 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNILSKLEVADRTQAAVYAHRNKL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|70731557|ref|YP_261298.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345856|gb|AAY93462.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 219 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT R++E L I GK++ EIA+ LG+S TV + + IM++ +G + +AV Sbjct: 151 QNHNLTARQLEILRLIVRGKSTREIALGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFAV 210 Query: 242 RNNIV 246 R I+ Sbjct: 211 RERII 215 >gi|121605575|ref|YP_982904.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120594544|gb|ABM37983.1| transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L ++ L Q KS V + F L+ RE++ + W++ GKT+ EI IL IS TV Sbjct: 174 LRQVAQLPQQQKPFAKSPRVVQEEIFGLSEREIQIMDWVAMGKTNSEIGSILNISGFTVK 233 Query: 219 NYIASIMRKTATKTRSGAIA 238 N++ I +K R+ A++ Sbjct: 234 NHMQRIFQKLNVFNRAQAVS 253 >gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] Length = 240 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE++CLTW ++GK++ EIA I+ + TV ++++ +K R A+ A+ Sbjct: 176 LTNREIQCLTWAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRAL 231 >gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] Length = 206 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + V G +L+ RE+E L I+EG ++ EIA LGIS +TV +I ++ K + Sbjct: 132 VLGQLSVLSGGQAQLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLAKLSAS 191 Query: 232 TRSGAIAYAVRNNIV 246 R+ A AVR ++ Sbjct: 192 DRTQAAIKAVRQGLL 206 >gi|289641790|ref|ZP_06473948.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508434|gb|EFD29375.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 377 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE+E LT ++ G T++ IA L I+ TV +++ I+RK + R+ AI+ +R I Sbjct: 313 LTGRELEVLTLMATGATNNRIAEKLVITNGTVKSHVKRILRKLGAENRAEAISQYLRLTI 372 >gi|224552993|gb|ACN54748.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+S GKT E+++IL I+ TV ++ ++M+K A+ Sbjct: 141 HQKKNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVK 200 Query: 239 YAV 241 V Sbjct: 201 LGV 203 >gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 221 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 19/175 (10%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPP------AGMDNRYCSL 133 P L+ + + E D Y V Q+P PV N T +G D Y S Sbjct: 47 PHLLITDIVMPEMDGYDLVRQVRQQPAFRLLPVIFLTGRNKTKERIRGYQSGCDV-YLSK 105 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREV 191 F++ + + L + ++I D W I + + M +Y WG LT RE Sbjct: 106 PFELEELGAVVRNLLDRMQMIQTD--WHIRTKSQARGEMETLAAYQ-QWG----LTQREQ 158 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E LT +++G ++ +I L +S T+ Y++S+++KT R+ + +A+ ++++ Sbjct: 159 EVLTLLTKGLSNAQIGDRLHLSARTIEKYVSSLLQKTEVHNRAELVRFALEHHLL 213 >gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei] gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236 Query: 245 IV 246 ++ Sbjct: 237 LI 238 >gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG+++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 168 LTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRTQAVIIAIKNG 226 >gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 122 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R Sbjct: 61 LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIR 117 >gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236 Query: 245 IV 246 ++ Sbjct: 237 LI 238 >gi|330895505|gb|EGH27816.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981863|gb|EGH79966.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71 >gi|330873485|gb|EGH07634.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 77 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71 >gi|330868990|gb|EGH03699.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011382|gb|EGH91438.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 74 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 14 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 68 >gi|257482151|ref|ZP_05636192.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625831|ref|ZP_06458785.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647709|ref|ZP_06479052.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|330987557|gb|EGH85660.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 77 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71 >gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] Length = 459 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ + Sbjct: 399 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 458 Query: 246 V 246 + Sbjct: 459 I 459 >gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE E L +++EG S EIA L +S TV N+ A+I+++T ++ + + YA Sbjct: 150 GAGPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHRANILKRTGLRSVAQLVLYA 209 Query: 241 VRNNIV 246 R ++ Sbjct: 210 ARLGLI 215 >gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 187 LSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243 >gi|115265604|dbj|BAF32866.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330966735|gb|EGH66995.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 77 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71 >gi|28871776|ref|NP_794395.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213966768|ref|ZP_03394919.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383276|ref|ZP_07231694.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302062485|ref|ZP_07254026.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302133467|ref|ZP_07259457.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855028|gb|AAO58090.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213928618|gb|EEB62162.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331018915|gb|EGH98971.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 77 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71 >gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 214 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +S G EIA LGIS TV N+I SI RK + A+A A R+ + Sbjct: 154 LTNRETEILRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASRSGM 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|66047505|ref|YP_237346.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|289675883|ref|ZP_06496773.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] gi|302188577|ref|ZP_07265250.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] gi|63258212|gb|AAY39308.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|330938127|gb|EGH41849.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] gi|330952935|gb|EGH53195.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] gi|330969528|gb|EGH69594.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 77 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71 >gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614] gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614] Length = 213 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L +++G + EIA L IS NTV N++ +I+ K +R A+ YAV+ Sbjct: 148 LRLTERELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMYAVKE 207 Query: 244 NIV 246 ++ Sbjct: 208 KLL 210 >gi|268610385|ref|ZP_06144112.1| response regulator [Ruminococcus flavefaciens FD-1] Length = 208 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Query: 163 GLLAAYQANMFKSY--DV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 G + + N+F+S DV K+F LT RE E + I +G + EIA L ++ TV Sbjct: 120 GGINVFCDNVFRSIKKDVVVQQDAKNFGLTERETEFIRLICDGCDNKEIAAKLFLAEGTV 179 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N I+ ++ K K R+ +A++NNIV Sbjct: 180 RNGISRLLEKLELKDRTQLAVFAIKNNIV 208 >gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] Length = 224 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217 >gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1] gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1] Length = 213 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA +L I+ TV ++++++ K R+ A YAV++ Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207 >gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] Length = 259 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE CL W++EGK+S E+A I+G S TVN +I + K +R+ A++ A+ Sbjct: 185 LTLREQICLAWVAEGKSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAVSKAL 240 >gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 234 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A Sbjct: 173 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 232 Query: 245 IV 246 ++ Sbjct: 233 LI 234 >gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 249 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ REVE L +++G ++ EIA L I+ TV N++ S++RK R A+ AV Sbjct: 169 KRLPLSVREVEVLDCVAQGLSNKEIAEALFITEQTVKNHMTSVLRKLQVNDRVQAVLCAV 228 Query: 242 RNN 244 RN Sbjct: 229 RNG 231 >gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] Length = 201 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K L+ RE E +TW++ G T+ EIA +L +S +TV + +I K + SG YA Sbjct: 128 SKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSPSGLTIYA 187 Query: 241 VRNNIV 246 + NN++ Sbjct: 188 LMNNLI 193 >gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002] gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC 7002] Length = 231 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 46/81 (56%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +Q M + +D LT RE E L I+ GK++ EIA L I+ +TV ++ +I+ Sbjct: 138 AQFQQPMAEMPRSVPAQDNPLTQREGEILALIANGKSNSEIAETLYIAASTVRVHVHAIL 197 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 +K + R+ A+ A+R+ ++ Sbjct: 198 QKLEARDRTQAVVIALRHGLI 218 >gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] Length = 224 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +S G ++ IA L ++ +TV ++ +I+RK +R A YAV++N Sbjct: 153 ELTARELEILGHLSAGHSNKIIARHLDLAESTVKVHVQNILRKLELDSRVQAAVYAVQHN 212 Query: 245 I 245 I Sbjct: 213 I 213 >gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I+ G+++ EIA L IS TV +I ++ K A + R+ A+ YA R+ + Sbjct: 161 LTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQAVTYAYRHGL 220 >gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 82 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +AN + D LT RE + L W + GK+S EI IL +TVN ++ +I+RK Sbjct: 2 KANTQQIEDSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKF 61 Query: 229 ATKTRSGAIAYAVR 242 TR A+ A+R Sbjct: 62 DVSTRVAAVIKAIR 75 >gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426] gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 391 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 41/66 (62%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE+E L +++G ++ E A L +S TV +YI+S +RK K R+ A+A A Sbjct: 325 GRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKA 384 Query: 241 VRNNIV 246 +R ++ Sbjct: 385 LRLGLI 390 >gi|238796086|ref|ZP_04639597.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] gi|238720031|gb|EEQ11836.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] Length = 240 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E + W S GK+ EIA+ILG+ T+ N++ ++RK AI+ AV Sbjct: 173 FSNRENEIIYWASVGKSYQEIALILGVKLTTIKNHMGKVVRKLGVTNAKHAISIAVE 229 >gi|254447404|ref|ZP_05060870.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] gi|198262747|gb|EDY87026.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] Length = 213 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G ++LT REV + +SEG ++ EIA L + TV NY++S++ K + R+ A+ Sbjct: 148 GDAYDLTAREVNIIELMSEGASNKEIAFRLDLKMGTVKNYVSSVLLKLGVRDRTQAV 204 >gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] Length = 212 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFKHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis serovar chinensis CT-43] Length = 210 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 209 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 44/80 (55%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A Q M ++ + LT RE+E L +SEGKT+ +I+ L I+ TV +++ I+ Sbjct: 127 AKVQGQMISAFTANVPLHQALTKRELEILKLMSEGKTNQQISEELYITIKTVKTHVSHIL 186 Query: 226 RKTATKTRSGAIAYAVRNNI 245 K + R+ A+ YA++ + Sbjct: 187 AKLEVEDRTQAVIYALKEKL 206 >gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1] gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1] Length = 230 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE + L W+S+GKT EIA+IL I+ TV ++ ++M+K AI Sbjct: 168 LSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAI 219 >gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236 Query: 245 IV 246 ++ Sbjct: 237 LI 238 >gi|302525216|ref|ZP_07277558.1| predicted protein [Streptomyces sp. AA4] gi|302434111|gb|EFL05927.1| predicted protein [Streptomyces sp. AA4] Length = 511 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGREVE L +++G ++ EIA L +SR TV+ ++ I K TR+ A A+R + Sbjct: 450 LTGREVEVLLQLAQGLSNPEIAAALTVSRKTVSTHLEHIYAKLGVTTRTQAALVAMRRGL 509 >gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 200 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE++ L SEG + +IA L ++ TV NY+++ MRKT K+R A YA Sbjct: 137 DNPLTDRELDALRLTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSRHEAARYA 194 >gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 43/66 (65%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D L+ RE++ + +S+G +++IA L + ++TV ++I++I +K +TR + +A Sbjct: 151 GSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWA 210 Query: 241 VRNNIV 246 RNN++ Sbjct: 211 YRNNVI 216 >gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 301 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L W+++GKT+ EI ILG + TV ++ +++ K +TR +A A+R Sbjct: 237 LTPRETEILFWVAQGKTNAEIGTILGAAPATVKKHVENLLPKLGVETR---LAAALR 290 >gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 V K+F LT RE E L+ ISEG T+ EIA L IS +TVN++ ++ K K + Sbjct: 138 VGLQKNFPPLTRREKEVLSLISEGNTNAEIAEKLFISADTVNSHRKKLLAKLEVKNTAML 197 Query: 237 IAYAVRNNIV 246 I YAV N ++ Sbjct: 198 IKYAVDNKLL 207 >gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1] Length = 210 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE + L W+S+GKT EIA+IL I+ TV ++ ++M+K AI Sbjct: 148 LSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAI 199 >gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 218 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L S G T EIA L ++ +TV N++ I+ K + RS A+ YA+R Sbjct: 150 QLSPREIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSEAVGYAIRTG 209 Query: 245 I 245 + Sbjct: 210 L 210 >gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] Length = 213 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++GK++ EIA L ++ TV +I++I K A + R+ A YAV++ Sbjct: 147 QLTPREQEVLAELTKGKSNREIASALFVTEKTVKTHISNIFIKLAVQDRTQAALYAVKHG 206 Query: 245 I 245 + Sbjct: 207 L 207 >gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 214 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L I++G+++ EIA +L I+ TV ++++++ K R+ A YAV++ Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKH 206 >gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 215 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ LT RE E L+ I++G+++ EIA L +S TV ++++I+ K R+ A + Sbjct: 149 QGRGGNLTEREREVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQAALW 208 Query: 240 AVRNN 244 AVRN Sbjct: 209 AVRNQ 213 >gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 206 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 144 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 203 Query: 245 I 245 + Sbjct: 204 L 204 >gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 E G+ A + K D D LT RE L I EG +++EIA L IS TV N Sbjct: 126 EEGVAAKVVPQLMKQQDTKE-PDPSLTPRERAILKCIGEGLSNNEIAERLAISTGTVKNN 184 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + I+ K + R+ YA+R+N+V Sbjct: 185 TSQILTKLDLRDRTQLAIYAIRHNLV 210 >gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L +++G+ S EIAV LGI+ TV Y+ SI K +R+ A+A A+ Sbjct: 166 IALTKRERQVLAGVAQGERSKEIAVRLGITERTVRAYLTSIYTKLNVDSRASAVAVAL 223 >gi|162452375|ref|YP_001614742.1| LuxR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161162957|emb|CAN94262.1| transcriptional regulator, LuxR family [Sorangium cellulosum 'So ce 56'] Length = 270 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE+E L + GKT+ EIAV+L IS+ TV ++IA K +R+GA Sbjct: 209 LTARELEVLRLVGVGKTNREIAVVLHISQKTVQHHIAHAYDKLGIYSRAGA 259 >gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 236 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L W ++GKTS EI+ IL I+ TVN +I +++ K ++ A A Sbjct: 176 LSNREIEVLRWTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAA 231 >gi|294632670|ref|ZP_06711229.1| LuxR family two component transcriptional regulator [Streptomyces sp. e14] gi|292830451|gb|EFF88801.1| LuxR family two component transcriptional regulator [Streptomyces sp. e14] Length = 201 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGR+++ L +++G ++ IA L SR+TV N I +M + + R+ A+A+A+R + Sbjct: 141 LTGRQLDVLRLMADGHGNEAIAATLHCSRHTVKNVIYELMGQLQVRNRAHAVAHALRTGL 200 Query: 246 V 246 + Sbjct: 201 I 201 >gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 43/66 (65%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D L+ RE++ + +S+G +++IA L + ++TV ++I++I +K +TR + +A Sbjct: 151 GSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWA 210 Query: 241 VRNNIV 246 RNN++ Sbjct: 211 YRNNVI 216 >gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 198 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ +E+ L I++GKTS EI+ IL +S T+ NYI+SI K R AI+ A N Sbjct: 138 LSKQEMNILYLIAQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNRMEAISLAKENG 196 >gi|332142261|ref|YP_004427999.1| two-component response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327552283|gb|AEA99001.1| two-component response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 298 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE E L WIS GKTS EI+ IL +S T N ++ I +K ++ A A A+R Sbjct: 237 ITKRESEVLYWISFGKTSWEISQILDMSPRTANKHLEQIYKKLGVDNKTSAAAIALR 293 >gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 217 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++EGK++ EIA L IS TV N+++SI+ K K R A+ A I Sbjct: 156 LSPREIEVLFLVAEGKSNREIAEQLVISEGTVKNHLSSILSKLGAKDRLQAVIRAREAGI 215 Query: 246 V 246 + Sbjct: 216 L 216 >gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter intermedius] Length = 236 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECLTW ++GK+S E +I+G+S TVN +I + + K R + A+ Sbjct: 174 LTPREKECLTWTAKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAI 229 >gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L W S GKT EIA+I+GI+ +TV +I +++ K AI A Sbjct: 181 LTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKAT 236 >gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 240 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E LTW + G+ EIA LG+S T+ N++ I + T + AI A+RN Sbjct: 178 LSDREREVLTWTAAGRRQFEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNG 236 >gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius ED99] Length = 208 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +++GKT+ EIA L +S T+ +++ I K R+ A YA+ N+ Sbjct: 147 KLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENH 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter xylosoxidans A8] Length = 83 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ R+ CL W + GKTS E A ILG+S +TVN ++ + K + R A+ A+R + Sbjct: 18 LSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKLGVRGRRAAVVAALRLGL 77 Query: 246 V 246 + Sbjct: 78 I 78 >gi|270490280|ref|ZP_06207354.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27] gi|270338784|gb|EFA49561.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27] Length = 104 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 31/53 (58%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 RE E L W S GKT EIA+ILGI ++TV +I +I+RK AI + Sbjct: 44 RENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGI 96 >gi|261880312|ref|ZP_06006739.1| LuxR family transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333002|gb|EFA43788.1| LuxR family transcriptional regulator [Prevotella bergensis DSM 17361] Length = 197 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GRE+E LT I EG + EIA L I TV + +IM K K+ S YAV + Sbjct: 131 ELSGREIEVLTLIVEGYINKEIAHQLNIGLTTVITHRKNIMDKLGVKSVSALTIYAVMHG 190 Query: 245 IV 246 V Sbjct: 191 YV 192 >gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D+ L+ RE E L + +G EIA L +S +TV+ Y+ + RK TR+GA+A A++ Sbjct: 149 DYGLSTRERETLELMVQGFIRKEIADRLNLSLHTVDTYLRGVYRKLEVNTRTGAVAKALK 208 Query: 243 NNIV 246 +V Sbjct: 209 EGLV 212 >gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato Max13] gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato K40] gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 149 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241 +L+ REVE L W+++GKT + I +LG++ TV ++ +IM+K AT + A+ A+ Sbjct: 88 KLSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKAAL 145 >gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 187 LSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243 >gi|329851959|ref|ZP_08266640.1| response regulator [Asticcacaulis biprosthecum C19] gi|328839808|gb|EGF89381.1| response regulator [Asticcacaulis biprosthecum C19] Length = 219 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + F++ D LTGRE E L ++ G T E+A LG++ +TV Y+ I +K Sbjct: 144 DHFRTQAPKADPDVALTGRETETLALLARGLTIAEVARHLGLAHSTVAGYVKLIYQKLNI 203 Query: 231 KTRSGAIAYAVRNNIV 246 TR A +AV+ + Sbjct: 204 STRVEATLHAVKRGLA 219 >gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 R + GL++ + +D L+E+ L AA + D G+ ++ RE+EC Sbjct: 147 RGQCGLVVFLGSEMTLQQDALYEVHARCFSLFAAVA--RIRPGDA--GRMRAISKRELEC 202 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G TS+EIA +L +S +T N Y+ +K R+ A+A A+R ++ Sbjct: 203 LKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 253 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++ G + EIA L IS NTV N++ +I+ K +R A+ YAVR Sbjct: 189 KLTEREMEVLRLVARGLGNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAVREK 248 Query: 245 IV 246 ++ Sbjct: 249 LL 250 >gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 206 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 144 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 203 Query: 245 I 245 + Sbjct: 204 L 204 >gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor owensensis OL] gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor owensensis OL] Length = 213 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+++ ++ K L+ RE+E I++G ++ +I+ IL IS TV NYI+SI+ K K Sbjct: 142 FQNHSINENKLKNLSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKN 201 Query: 233 RSGAIAYAVRN 243 R+ Y N Sbjct: 202 RTQIAVYYFSN 212 >gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 230 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R + Sbjct: 169 LSIRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 228 Query: 246 V 246 + Sbjct: 229 I 229 >gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family [Leptospirillum rubarum] Length = 211 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L +S+G ++ EI I GIS +TV +I SI+ K + TR+ A A++ Sbjct: 148 DNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIK 207 Query: 243 NNIV 246 ++ Sbjct: 208 KGLI 211 >gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385] gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385] Length = 224 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217 >gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 319 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 213 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L W+++GK++ +IA ILG+S TV ++A I ++R+ A+ A+ + Sbjct: 151 LSRREAEVLLWVAQGKSNGDIADILGLSEFTVKRHMAGIFDTLGVQSRNAAMLRALES 208 >gi|167645498|ref|YP_001683161.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347928|gb|ABZ70663.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 137 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTG+EV+ L ++ G+++ EIA LG+S NTV +IA + K A R+ AI A Sbjct: 73 SLGLTGQEVKVLERLAAGQSNKEIAAALGLSPNTVKTHIAHLFEKLAVSRRTQAIGKA 130 >gi|148555438|ref|YP_001263020.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500628|gb|ABQ68882.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 879 Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 33/58 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +F L+ RE E + ++EG + EIAV LGIS TV + I K +RS AIA A Sbjct: 816 NFTLSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVASRSQAIARA 873 >gi|87123539|ref|ZP_01079390.1| response regulator like protein [Synechococcus sp. RS9917] gi|86169259|gb|EAQ70515.1| response regulator like protein [Synechococcus sp. RS9917] Length = 231 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 4/78 (5%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +AN+ + D + L+ R++E L ++EG ++ EIA L I+ NTV ++++ IM++ Sbjct: 157 EANVMEPSD----QGVVLSERQLEILALVAEGLSNREIATQLQITANTVRDHLSEIMQRL 212 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A++ A+R ++ Sbjct: 213 GVGNRASAVSSALRLRLI 230 >gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf0-1] Length = 239 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 24/155 (15%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD----VARIRIGLMLLFP 149 + + Y +++ P+ P H L + P G++ SL + AR+R+ L +L Sbjct: 101 QSGELYRLVRVPS---GPGVHGLQIPVFGPQGLEG-AMSLGGEQIDASARVRLALGMLAS 156 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 R RL E L D GK L+ RE E L W++ G+ +IA Sbjct: 157 VAFFSAR-RLLEAPL------------DETAGK---LSTREREVLAWVAAGRRQADIAAT 200 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LG+S TV N++ S R T + AI A+R Sbjct: 201 LGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKG 235 >gi|225872367|ref|YP_002753822.1| two-component system response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794530|gb|ACO34620.1| two-component system response regulator [Acidobacterium capsulatum ATCC 51196] Length = 214 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EGK++ E A +LG S TV ++MRK + S + YAVRN++ Sbjct: 152 LTPREGEVLQLLAEGKSTKEAASVLGTSTFTVETQRKNVMRKLRLRNVSDLVRYAVRNHM 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|148554913|ref|YP_001262495.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500103|gb|ABQ68357.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 278 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT EV CL W++ GKT DEIA I+G +R T+ ++ + K RS A+ Sbjct: 202 LTRLEVNCLRWVARGKTDDEIATIMGRARPTIRFHLQNAAIKLGAANRSQAV 253 >gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 215 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A+Y + Y H + LT RE E L + G ++ EIA +L IS NTV ++ ++ Sbjct: 134 VASYLISQSSHYRYHSPEATGLTQREKEILNKLRAGASNTEIAKLLFISENTVKTHLYNL 193 Query: 225 MRKTATKTRSGAIAYA 240 +K + K R+ A+++A Sbjct: 194 FKKISVKNRTQAVSWA 209 >gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 148 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans] gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans] gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans] gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti] Length = 243 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R Sbjct: 182 LTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGY 241 Query: 246 V 246 + Sbjct: 242 I 242 >gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911] gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911] Length = 211 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L I++GK++ EIA L I+ TV ++++++ K R+ A AVR Sbjct: 150 ELTKRELDVLKEIAKGKSNKEIAASLFITEKTVKTHVSNLLSKLEISDRTQAALLAVREK 209 Query: 245 IV 246 +V Sbjct: 210 LV 211 >gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum ATCC 27405] gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 1313] Length = 216 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L I++G + EIA L IS TV N++++I +K R+ A YA ++N Sbjct: 154 DLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRTQAAIYAYKHN 213 Query: 245 I 245 I Sbjct: 214 I 214 >gi|284034369|ref|YP_003384300.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813662|gb|ADB35501.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 199 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L ++ G T+ EIA L +S TV NY++ I+ KT ++R AI A Sbjct: 136 DNPLTDRECEVLRQVTTGATAQEIARTLSLSAGTVRNYLSRILTKTGARSRIEAIRKA 193 >gi|171058317|ref|YP_001790666.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775762|gb|ACB33901.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 236 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE + L + +G + EI +L IS NTVN Y+ + RK +R+ A A R + Sbjct: 175 LTGREEDVLRMMGKGHKAAEIGRLLAISVNTVNGYVREVYRKLGISSRAEAAIEATRRGL 234 Query: 246 V 246 + Sbjct: 235 L 235 >gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 238 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 31/42 (73%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE + L W SEGKTS+E A+++G+S TVN +I + ++K Sbjct: 178 LTLREKDILRWCSEGKTSEETALLMGLSERTVNFHIGNSIKK 219 >gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida] Length = 223 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+ EI+ ILG S TV ++A+ K R +I+ A+ Sbjct: 158 KLTKREKECLIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 214 >gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 243 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 29/197 (14%) Query: 72 QKLDSIVSSDWPFD-LVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNR 129 Q+ ++ DWP + L R +A + D + V+ +L P +H + I +D Sbjct: 53 QQKQHVLLCDWPGEWLERYVARNYVD-HDPVVSHMKQLQAPFQWHEASQGIR----IDKS 107 Query: 130 YCSLTFDVARIRIGLMLLFP----KGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGK 182 + D ++ L FP G+I++ E L+A Q ++ +Y V G+ Sbjct: 108 SGEVMGDAGAFKLRDGLAFPLITLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAV--GR 165 Query: 183 DFEL-------------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 +L T RE ECL W + GK+ EI+ ILGIS +T ++ + K Sbjct: 166 AMQLHTMANRTIDHIVLTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLG 225 Query: 230 TKTRSGAIAYAVRNNIV 246 R A+A A+R + Sbjct: 226 AVNRVQAVAEAIRRGYI 242 >gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum PSI07] gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum PSI07] Length = 236 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAI 231 >gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236 Query: 245 IV 246 ++ Sbjct: 237 LI 238 >gi|134101943|ref|YP_001107604.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914566|emb|CAM04679.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 156 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L +++G + +EIA L S T+ N + M++ + R+ A+AYA+R I Sbjct: 96 LTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLGI 155 Query: 246 V 246 + Sbjct: 156 I 156 >gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum CMR15] Length = 236 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ + Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|237801455|ref|ZP_04589916.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024314|gb|EGI04371.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 77 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L W +EGKT+ IA+IL + T++ +IAS ++K ++ A A Sbjct: 17 LTQREIEVLKWSAEGKTAGAIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVRA 71 >gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans] gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 224 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K + R+ A+ A++N Sbjct: 161 LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVNDRTQAVVVAIKNG 219 >gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|163735012|ref|ZP_02142449.1| two-component response regulator, putative [Roseobacter litoralis Och 149] gi|161391794|gb|EDQ16126.1| two-component response regulator, putative [Roseobacter litoralis Och 149] Length = 303 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E L W+S GK + +IA IL +S T+N ++ + +K R+ A A R Sbjct: 240 FGLTPREAEVLYWLSLGKPNRDIAQILSLSSRTINKHLEQVFQKMGVDNRTAAAVAADR 298 >gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis] Length = 245 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+ILGI ++TV +I +I+RK AI + Sbjct: 182 FSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIE 238 >gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 425 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A Sbjct: 364 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 423 Query: 245 IV 246 ++ Sbjct: 424 LI 425 >gi|126433549|ref|YP_001069240.1| response regulator receiver protein [Mycobacterium sp. JLS] gi|126233349|gb|ABN96749.1| response regulator receiver protein [Mycobacterium sp. JLS] Length = 207 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+EG + EIA L S+ TV N + + + + RS A+AYAVR + Sbjct: 147 LTDREIKVLRLIAEGHDTSEIAQQLCYSQRTVKNVLHDVTTRLQLRNRSHAVAYAVREGL 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica] gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica W22703] Length = 244 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L YQ+N K+ + + + ++ + RE E L W S GKT EI++ILGI R+TV +I Sbjct: 158 MLGLYQSNSDKNENRNTQIERDIFSPRENEILYWASVGKTYAEISIILGIKRSTVKFHIG 217 Query: 223 SIMRKTATKTRSGAIAYAV 241 +++RK AI + Sbjct: 218 NVVRKLGVLNAKHAIRLGI 236 >gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 265 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE E L W++ GK+ IA ILG+S +TV+ + I RK R+ AI A+ Sbjct: 194 EIALSARETEVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDRTAAILKAIN 253 Query: 243 NNIV 246 +V Sbjct: 254 LGLV 257 >gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 209 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D+ L+ RE++ L + EG ++ EIA L +S NTV ++ I+ K A R A A+R Sbjct: 146 DYHLSQRELDVLKLMVEGYSNPEIAGKLFLSPNTVKTHVRGILNKLAVDDRVQAAVVALR 205 Query: 243 NNIV 246 N +V Sbjct: 206 NGLV 209 >gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10] gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10] Length = 209 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 147 DLTNREQEVLLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHG 206 Query: 245 IV 246 ++ Sbjct: 207 LI 208 >gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein [Ralstonia solanacearum GMI1000] gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ + Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 206 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L I+ G+++ EIA L ++ TV ++++++ K + R+ A YAVR Sbjct: 143 EIALTAREREVLRLIAAGRSNREIARELSVAEKTVKTHVSNVLMKLGVQDRTQAALYAVR 202 Query: 243 NNIV 246 +V Sbjct: 203 RGLV 206 >gi|291007045|ref|ZP_06565018.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 175 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L +++G + +EIA L S T+ N + M++ + R+ A+AYA+R I Sbjct: 115 LTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLGI 174 Query: 246 V 246 + Sbjct: 175 I 175 >gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L GREVE L +++G EI LGIS +TVN++I I K ++RS A+A Sbjct: 154 LAGREVEVLGLLAQGYLYKEIGESLGISTHTVNSHIRRIYEKLHVRSRSQAVA 206 >gi|333029774|ref|ZP_08457835.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM 18011] gi|332740371|gb|EGJ70853.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM 18011] Length = 206 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 167 AYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A++ N K+ + ++ + EL+ RE++ ++ I+ GKT+ EIA L IS+ TV + +I Sbjct: 121 AHEPNHSKNMEAINAHQVHELSPREIDVISLIAVGKTNKEIAKKLSISQTTVITHRKNIT 180 Query: 226 RKTATKTRSGAIAYAVRN 243 K K+ SG YAV N Sbjct: 181 DKLGIKSVSGLTIYAVIN 198 >gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 264 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 201 LTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 260 Query: 246 V 246 + Sbjct: 261 L 261 >gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 230 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ REVE L +++G+++ +I+ +L IS TV N+++S++RK R+ A+ A+R Sbjct: 168 LSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDAIR 224 >gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 207 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G+++ EIA L I+ TV +++S++ K + R+ A YA++ Sbjct: 143 ELTPRESEVLICITQGRSNREIAEQLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQRG 202 Query: 245 IV 246 +V Sbjct: 203 LV 204 >gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 209 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I+EG+++ EIA L IS TV N++ SI+++ + R+ A A Sbjct: 148 ELTPRETEVLALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILA 203 >gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp. avium ATCC 25291] Length = 218 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ LT I +G ++ EIA L IS TV ++I I K + R+ AI YA N Sbjct: 154 ELTTRELDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNG 213 Query: 245 IV 246 IV Sbjct: 214 IV 215 >gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 219 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + I+EG +S EIA +L IS TV + A+I++K + R+ YA+R + Sbjct: 157 LTAREAEVVKLIAEGCSSREIAALLVISTKTVERHRANILQKLDMRDRTQLTRYAIRTGL 216 Query: 246 V 246 + Sbjct: 217 L 217 >gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 189 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans] gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans] gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans] gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|254410670|ref|ZP_05024449.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182876|gb|EDX77861.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 216 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L ++ G ++ EI L +S T+ Y++S++RKT T R+ + +A+ N Sbjct: 153 LHLTQREQQVLDLLTTGLSNSEIGNKLHLSPRTIEKYVSSLLRKTETSNRAEIVRFALEN 212 Query: 244 NIV 246 ++V Sbjct: 213 HLV 215 >gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|218528264|ref|YP_002419080.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520567|gb|ACK81152.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 500 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I +G T EIA LG+S +TV N++AS+ RK RS + +A Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484 Query: 245 I 245 I Sbjct: 485 I 485 >gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1] gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1] gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 82 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L W + GK+S EI IL +TVN ++++I+RK TR A+ A+R Sbjct: 19 LTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFEVPTRVAAVIKAIR 75 >gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 207 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REVE L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|254822986|ref|ZP_05227987.1| hypothetical protein MintA_23864 [Mycobacterium intracellulare ATCC 13950] Length = 518 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L IS T N++ K R GA YA+R+ + Sbjct: 453 LTPREVEVLCLVARGASNKEIAASLVISEKTARNHVERTYAKIGVSNRIGASMYALRHGL 512 Query: 246 V 246 V Sbjct: 513 V 513 >gi|240140620|ref|YP_002965100.1| putative transcriptional regulator, PAS domain S-box [Methylobacterium extorquens AM1] gi|240010597|gb|ACS41823.1| putative transcriptional regulator, PAS domain S-box [Methylobacterium extorquens AM1] Length = 500 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I +G T EIA LG+S +TV N++AS+ RK RS + +A Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484 Query: 245 I 245 I Sbjct: 485 I 485 >gi|13471875|ref|NP_103442.1| hypothetical protein mll1989 [Mesorhizobium loti MAFF303099] gi|14022619|dbj|BAB49228.1| mll1989 [Mesorhizobium loti MAFF303099] Length = 525 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L I+ G T+ E+A L IS T +++I S+ K TR+ A YAV + + Sbjct: 458 MTPREIEVLRLIATGLTAKEVARKLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGL 517 Query: 246 V 246 V Sbjct: 518 V 518 >gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 211 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE E L +++G ++ +IA L IS TV N++++I+RK + R+ A+ A++ Sbjct: 147 ELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRG 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 187 LTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246 Query: 246 V 246 + Sbjct: 247 L 247 >gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 71 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 5 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 64 Query: 240 A 240 A Sbjct: 65 A 65 >gi|325474944|gb|EGC78130.1| hypothetical protein HMPREF9353_00977 [Treponema denticola F0402] Length = 140 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +F L+ +E+E + +SEG ++ +IA G+S T+ N I+ I KT R+ A+A + Sbjct: 77 EFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNISVIFDKTFVSDRTQLAAFAFK 136 Query: 243 NNIV 246 N IV Sbjct: 137 NGIV 140 >gi|254563130|ref|YP_003070225.1| transcriptional regulator, PAS domain S-box [Methylobacterium extorquens DM4] gi|254270408|emb|CAX26408.1| putative transcriptional regulator, PAS domain S-box [Methylobacterium extorquens DM4] Length = 500 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I +G T EIA LG+S +TV N++AS+ RK RS + +A Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484 Query: 245 I 245 I Sbjct: 485 I 485 >gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 250 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA+ILGI+ +TV +I ++++K AI V N+ Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104] gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104] Length = 218 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 37/68 (54%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H ELT RE + LT I +G ++ EIA L IS TV ++I I K + R+ AI Sbjct: 148 HGAAIAELTTRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIV 207 Query: 239 YAVRNNIV 246 YA N IV Sbjct: 208 YAYDNGIV 215 >gi|329935276|ref|ZP_08285242.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305099|gb|EGG48958.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 248 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +DF L+ REVE + I+ G + +IA IS TV N+I I K + +RS AIA+ Sbjct: 180 RDFGLSSREVEVMDLIASGMNNRQIAATCFISEKTVKNHINRIFAKLHSASRSEAIAH 237 >gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+E T+D+IA+ L I+R TV + A+I+ K + R YA+R + Sbjct: 158 LTPREREVLKLIAEAHTNDQIALELQIARRTVERHRANILAKLHMRDRVELTRYAIRRGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] Length = 199 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +G+ LT RE+E L +++GK + EIA L I TV NYI++I+ K K R AI Sbjct: 132 YGEGNPLTVREIEVLELVADGKNTKEIADELSIKTGTVRNYISTILDKLQVKNRIEAI 189 >gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 244 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L YQ+N K+ + + + ++ + RE E L W S GKT EI++ILGI R+TV +I Sbjct: 158 MLGLYQSNSDKNENRNPKIERDIFSPRENEILYWASVGKTYAEISIILGIKRSTVKFHIG 217 Query: 223 SIMRKTATKTRSGAIAYAV 241 +++RK AI + Sbjct: 218 NVVRKLGVLNAKHAIRLGI 236 >gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC 14579] gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 159 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 93 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 152 Query: 240 A 240 A Sbjct: 153 A 153 >gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum 12472) Bound To C6-Hsl gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators [Chromobacterium violaceum ATCC 12472] Length = 265 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE + W+S GKT+ EIA IL IS TV ++A+++RK R+ AI + Sbjct: 195 NMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMH 254 >gi|30314824|emb|CAD70192.1| putative HTH_LUXR domain-containing transcription activator [Pseudomonas syringae] Length = 238 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 34/50 (68%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ Sbjct: 176 FTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 225 >gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 239 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|289678710|ref|ZP_06499600.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. syringae FF5] Length = 74 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT R++E L I GK++ EIAV LG+S T+ + A +M++ +G + + VR Sbjct: 8 FRLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRAQVMKRLQIFDVAGLVLFCVRE 67 Query: 244 NIV 246 I+ Sbjct: 68 RII 70 >gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] Length = 199 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 137 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196 Query: 245 I 245 + Sbjct: 197 L 197 >gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] Length = 196 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 134 DLTEREFEILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 193 Query: 245 I 245 + Sbjct: 194 L 194 >gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14] gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14] Length = 207 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REVE L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|163853215|ref|YP_001641258.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163664820|gb|ABY32187.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 500 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I +G T EIA LG+S +TV N++AS+ RK RS + +A Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484 Query: 245 I 245 I Sbjct: 485 I 485 >gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 336 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT RE E L W+ +GK + +I ILG S T+ ++ + K +TR+ A A+ Sbjct: 267 FKLTAREAEVLYWVVKGKVNRDIGDILGASPATIKKHLERVYAKLGVETRTAAAGRAM 324 >gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580] gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2] gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580] gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2] Length = 211 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EGKT+ IA L I+ TV ++ +I+ K R+ A YA RN + Sbjct: 150 LTARELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDDRTQAAIYAHRNKL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519] gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii] Length = 211 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S ++ G D LT RE E L I+EG ++ +I+ L IS TV N+++SI+RK + R+ Sbjct: 139 SRNIKSGVD-SLTRREYEVLLLIAEGMSNKDISDHLVISEKTVKNHVSSILRKLDLQDRT 197 Query: 235 GAIAYAVRNNI 245 A +A++ + Sbjct: 198 QAAIFAIKQKL 208 >gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L +SEG T+ IA L IS TV +I IM+K + R+ A+A A++ Sbjct: 452 LELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQARDRTQAVALAMKY 511 Query: 244 NIV 246 ++ Sbjct: 512 GLI 514 >gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum] Length = 265 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+ RE + W+S GKT+ EIA IL IS TV ++A+++RK R+ AI Sbjct: 195 NMPLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAI 249 >gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] Length = 151 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 89 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 148 Query: 245 I 245 + Sbjct: 149 L 149 >gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 287 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG T+ EI+ +L IS +TV +++ + K R+ A +A +NN+ Sbjct: 227 LTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQAAVWAAKNNL 286 Query: 246 V 246 V Sbjct: 287 V 287 >gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 361 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ A A+ Sbjct: 292 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGVETRTAAAGIAM 349 >gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245 Query: 246 V 246 + Sbjct: 246 L 246 >gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] Length = 199 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 137 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196 Query: 245 I 245 + Sbjct: 197 L 197 >gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] Length = 196 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 134 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 193 Query: 245 I 245 + Sbjct: 194 L 194 >gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 100 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 42/61 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ + I+ G T+ EIA L IS+ TV+N+I++I+ KT T+ R +++A+++ Sbjct: 12 LSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRVALVSWALKSGK 71 Query: 246 V 246 V Sbjct: 72 V 72 >gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT RE+E L I GK++ EIA L +S NTV+ + A+IM + + YA+ Sbjct: 141 KSMGLTNRELEILQLIVSGKSNKEIASDLSLSVNTVSVHRANIMEGLGIHNTAELVVYAI 200 Query: 242 RNNIV 246 +N +V Sbjct: 201 KNGLV 205 >gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] Length = 219 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L IS GK++ EIA L IS TV ++++++ K + R+ A +A++ I Sbjct: 150 LTDREVDVLKEISTGKSNKEIAAALFISEKTVKTHVSNLLGKLELQDRTQAALFAIQAGI 209 >gi|302390092|ref|YP_003825913.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] gi|302200720|gb|ADL08290.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] Length = 327 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E + ++ GKT+ EIA L +S TV NY++ I+RK RS ++YA++N Sbjct: 265 LTAQEQKVFYALALGKTNKEIASELYLSPATVRNYVSKILRKLNLPNRSAVVSYAMKN 322 >gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] Length = 241 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 156 RDRLWEIGLLAAYQANMFKSY----DVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +DR GLL M Y + H ++ L+ RE E L W S GKT EIA +L Sbjct: 141 KDRHDLQGLLIDTHEMMLHLYRDESERHKSEENMLSSRENEILYWSSTGKTYPEIAHMLN 200 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ +TV ++ I++K AI+ A+ NI+ Sbjct: 201 ITVSTVKFHMGKIVKKMGVNNAKHAISLAIELNII 235 >gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 212 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+EGK + EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 ELTNRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSKLDVQDRTQAAIYAFQHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 239 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 305 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT RE E L WI++GK++ +I ILG+S TV ++ I K + R+ A A Sbjct: 240 QHFHLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 299 Query: 242 R 242 + Sbjct: 300 Q 300 >gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE+E L +++G ++ EIA L IS TV Y++ I+ K + R A+ YA R Sbjct: 155 EVPLTPRELEVLLLMADGLSNSEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYR 214 Query: 243 NNIV 246 +V Sbjct: 215 RGLV 218 >gi|13488084|ref|NP_085693.1| two-component regulator [Mesorhizobium loti MAFF303099] gi|14027942|dbj|BAB54534.1| two-component regulator [Mesorhizobium loti MAFF303099] Length = 812 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE + L + EG + IAV+LG+S TV ++ ++ RK +TR AI+ A Sbjct: 750 ELSRRENKILVIVCEGAANKSIAVMLGVSEATVKFHLGNVYRKLGCRTRQEAISIARATG 809 Query: 245 IV 246 IV Sbjct: 810 IV 811 >gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] Length = 171 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 107 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 166 Query: 245 IV 246 +V Sbjct: 167 LV 168 >gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b] gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei DM98] gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 14] gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 91] gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 9] gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei B7210] gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei NCTC 13177] gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 112] gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei BCC215] gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei] gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei] gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei] gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b] gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] Length = 239 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|315618207|gb|EFU98797.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 3431] Length = 216 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ S+ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYSLFKKIAVKNRTQAVSWANDN 213 >gi|258650584|ref|YP_003199740.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553809|gb|ACV76751.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 524 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + G++S +IA L IS T N++ I KT R+GA +AV++ I Sbjct: 457 LTAREEQVLALAAVGRSSRQIAAELTISEKTARNHLEHIYTKTGVSNRAGASLFAVQHGI 516 Query: 246 V 246 V Sbjct: 517 V 517 >gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] Length = 204 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ Sbjct: 142 DLTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201 Query: 245 I 245 + Sbjct: 202 L 202 >gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor bescii DSM 6725] Length = 211 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE+E IS+G ++ EIA +L IS TV NYI SI++K K R+ Y Sbjct: 152 LTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|254430340|ref|ZP_05044043.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] gi|197624793|gb|EDY37352.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] Length = 99 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 42/65 (64%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ++ ++ +L+ RE+E + ++EG T+ EIA L IS+ TV+N++++I KT K R Sbjct: 14 ELQQSQERDLSERELEIIALVAEGLTNQEIAGTLTISKRTVDNHVSNIFTKTGAKNRVAL 73 Query: 237 IAYAV 241 + +A+ Sbjct: 74 LNWAM 78 >gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 200 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 7894] Length = 239 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|27376076|ref|NP_767605.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349215|dbj|BAC46230.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 306 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 241 ELGLTTREGEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 291 >gi|302038204|ref|YP_003798526.1| hypothetical protein NIDE2901 [Candidatus Nitrospira defluvii] gi|300606268|emb|CBK42601.1| protein of unknown function, putative Transcriptional regulator [Candidatus Nitrospira defluvii] Length = 203 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE + +++G T+ EIA L I+ TV +I IMRKT + TR+G + R+ Sbjct: 144 FQLTNREQSVVENLAKGWTNKEIANALKITEQTVKEHIKHIMRKTNSTTRTGVLVQVFRS 203 >gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +V KD LT RE E L I+EG ++ EIA LG+S TV+N+ ++MRK + Sbjct: 126 NVQRSKD-TLTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNVASI 184 Query: 237 IAYAVRNNIV 246 YA++N ++ Sbjct: 185 TRYAMQNGLI 194 >gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 247 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + Y A M K + K LT RE E L W EGKT+ EI+ IL +S TV +++S Sbjct: 164 VFECYSALMLK---LAQNKQTHLTAREKESLFWACEGKTTWEISKILDVSERTVIFHLSS 220 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 K R A+A A+ + ++ Sbjct: 221 ATSKLGAVNRQHAVAKAILSGLI 243 >gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437] Length = 92 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I+++M+K K RS A+ VR Sbjct: 30 LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVR 86 >gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 92 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 39/56 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 16 LSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 71 >gi|89092629|ref|ZP_01165582.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89083141|gb|EAR62360.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 217 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE + L ++EG ++ EIA L IS TV + +I K T +G YA+ NN+ Sbjct: 156 LTGREKDVLKLVAEGNSNKEIARTLDISVRTVETHRQNIKNKLDIHTAAGLTRYAIDNNL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 221 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I EGK++++IA L +S NT+ ++ IM K A R A A+R+ + Sbjct: 161 LSERELEVLKLIVEGKSNNQIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|67921004|ref|ZP_00514523.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67857121|gb|EAM52361.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 231 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 FELT RE E L ++ G ++ EI L +S T+ Y++S++RKT T R+ + +A + Sbjct: 161 FELTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFAFDH 220 Query: 244 NIV 246 ++ Sbjct: 221 HLA 223 >gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 215 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K++D H ELT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 137 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 196 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 197 RTQAVVYAFRHHLV 210 >gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 207 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REVE L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 247 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE ECL W EGK+ EI+ ILG S TV ++A+ K R +I+ A+ Sbjct: 182 KLTKREKECLIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 238 >gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9515] gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9515] Length = 92 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 39/56 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 16 LSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 71 >gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp. 8437] Length = 216 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L + +G ++ EIA L IS TV ++++I++K K+RS AI YA+++ + Sbjct: 153 LTPRELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAIIYAIQHEL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 203 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L I++G ++++IA +S NTV +YI RK TR A+A+A++ Sbjct: 137 DSGLSPREAEMLALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVTTRPQAVAWALK 196 Query: 243 NN 244 N Sbjct: 197 NG 198 >gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 208 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L I G T+ E+A IL +S TV NY++ I+ KT ++R AI A Sbjct: 145 DNPLTERECEVLRLIGTGATAQEVAQILCLSPGTVRNYLSRILSKTGARSRIEAIRKA 202 >gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074] Length = 243 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 180 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 239 Query: 246 V 246 + Sbjct: 240 L 240 >gi|114798675|ref|YP_760164.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114738849|gb|ABI76974.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 137 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + EL+ ++V CL W+ GKT EIA I+ S NTV +I + ++ R+ A+ A Sbjct: 72 ARPAELSPQQVTCLRWVKAGKTDQEIAEIILCSVNTVRYHIKTALKDLGASNRTHAVVLA 131 Query: 241 VRNNIV 246 + + ++ Sbjct: 132 IEHRLI 137 >gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W] gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820] gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI] gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W] gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820] gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|84494899|ref|ZP_00994018.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649] gi|84384392|gb|EAQ00272.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649] Length = 937 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG ++ +++ L I+ NTV N++ SI++KT R+ A YA + + Sbjct: 873 LTFRELEVLRLVAEGLSNRQLSERLFITENTVTNHVRSILQKTGVANRTMAARYAAEHGL 932 Query: 246 V 246 + Sbjct: 933 L 933 >gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] Length = 250 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA+ILGI+ +TV +I ++++K AI V N+ Sbjct: 180 FSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 248 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 185 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 244 Query: 246 V 246 + Sbjct: 245 L 245 >gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 231 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L +++G ++ I+ L IS TV N+++SI+RK R+GA+ A+R Sbjct: 168 LTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVVEAIR 224 >gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 213 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K++D H ELT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 195 RTQAVVYAFRHHLV 208 >gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor hydrothermalis 108] gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 211 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE+E IS+G ++ EIA +L IS TV NYI SI++K K R+ Y Sbjct: 152 LTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti MAFF303099] Length = 215 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++SEG+++ IA LG+S TV+++ + MRK + + YA+RN + Sbjct: 153 LTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212 >gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142] Length = 90 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+GRE++ L +S G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 12 LSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQ 68 >gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 243 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W ++GKT+ EI+VIL I+ TV ++ RK R+ A+A A+ + Sbjct: 181 LTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL 240 Query: 246 V 246 + Sbjct: 241 I 241 >gi|297162410|gb|ADI12122.1| transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 166 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L ++EG + +IA+ L S T+ N + ++M + + RS A+AYA+R + Sbjct: 106 LAAREIEVLRLVAEGYDTADIAMKLSYSERTIKNVLHAVMTRLNLRNRSHAVAYALRQGL 165 Query: 246 V 246 + Sbjct: 166 I 166 >gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 353 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ A A+ Sbjct: 284 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGAETRTAAAGIAM 341 >gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 243 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W ++GKT+ EI+VIL I+ TV ++ RK R+ A+A A+ Sbjct: 181 LTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKAL 236 >gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L I++G+++ EIA L I+ TV +++S++ K + R+ A YA++ Sbjct: 142 VELTPREREVLICITQGRSNREIAEQLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQR 201 Query: 244 NIV 246 +V Sbjct: 202 GLV 204 >gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599] gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599] Length = 76 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I+++M+K K RS A+ VR Sbjct: 14 LTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVR 70 >gi|303240539|ref|ZP_07327055.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302591941|gb|EFL61673.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 210 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +F LT RE+E + IS+GK+ EI ++ +S TV N + ++ + R +AV+ Sbjct: 147 EFNLTDREIEIIKHISDGKSYKEIGEVIHLSEGTVRNMVYELLGRFNLNDRIQLAVFAVK 206 Query: 243 NNIV 246 NNI+ Sbjct: 207 NNII 210 >gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36] gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36] Length = 244 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W EGK++ + ++IL IS TV + ++I +K RS AIA A+ + Sbjct: 182 LSKRELEVLNWAKEGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIARAIHFGL 241 Query: 246 V 246 V Sbjct: 242 V 242 >gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] Length = 92 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 39/56 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+GRE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 14 LSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 69 >gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum] Length = 233 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + L+ RE + W+S GKT+ EIA IL IS TV ++A+++RK R+ AI + Sbjct: 163 NMPLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGM 221 >gi|42527826|ref|NP_972924.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|41818654|gb|AAS12843.1| DNA-binding response regulator [Treponema denticola ATCC 35405] Length = 217 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +F L+ +E+E + +SEG ++ +IA G+S T+ N I+ I KT R+ A+A + Sbjct: 154 EFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNISVIFDKTFVSDRTQLAAFAFK 213 Query: 243 NNIV 246 N IV Sbjct: 214 NGIV 217 >gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] Length = 212 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia thailandensis] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator [uncultured proteobacterium QS1] Length = 223 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W+ +GK E+A+I IS +TV +I+ I K A+ A+R I Sbjct: 163 LSAREIEILQWVGKGKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQAVYEAIRRGI 222 Query: 246 V 246 + Sbjct: 223 I 223 >gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 340 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L W+ +GKT+ +I ILG S T ++ + K +TR+ A A++ Sbjct: 271 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIK 329 >gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] Length = 215 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +V K +ELT RE+E + ++ G TS EIA L I RNTV Y I K K+ Sbjct: 145 NVKKRKPYELTDRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAIEI 204 Query: 237 IAYAVRNNIV 246 + +A +N ++ Sbjct: 205 VVFAYKNKLI 214 >gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi] Length = 250 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA+ILGI+ +TV +I ++++K AI V N+ Sbjct: 180 FSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 237 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++ Y+ + + + G LT RE+E L I+ G EIA + ++ TV N+I++ Sbjct: 154 MMQLYEQGLVEKEPIGEG----LTSREIEVLLRIARGMVPKEIAQAIAVTEKTVRNHISN 209 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I RK RS + YA++ ++ Sbjct: 210 IYRKLNIYDRSQIVIYAIKKGLI 232 >gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067] gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171] Length = 212 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550] gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550] gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3] gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 209 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +++GKT+ EIA L +S TV +++ I K R+ A YA+ N Sbjct: 148 KLSNRETEVLKEMAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENK 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 267 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L WI+ GK++ IA ILGISR+TV+ I K R+ A + + + Sbjct: 199 LSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGL 258 Query: 246 V 246 V Sbjct: 259 V 259 >gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|229591820|ref|YP_002873939.1| putative response regulator [Pseudomonas fluorescens SBW25] gi|229363686|emb|CAY51054.1| putative response regulator [Pseudomonas fluorescens SBW25] Length = 219 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT R++E L I GK++ EIA LG+S TV + + IM++ +G + +A Sbjct: 150 GHSHNLTARQLEILRLIVRGKSTREIAHGLGLSIKTVEAHRSQIMKRLQIFDVAGLVLFA 209 Query: 241 VRNNIV 246 VR I+ Sbjct: 210 VREQII 215 >gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|124008987|ref|ZP_01693672.1| DNA-binding response regulator, LuxR family, putative [Microscilla marina ATCC 23134] gi|123985413|gb|EAY25321.1| DNA-binding response regulator, LuxR family, putative [Microscilla marina ATCC 23134] Length = 222 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E T RE+E L + E T+ EIA L ISR TV + ++ KT + +G + YA++N Sbjct: 153 EFTDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGARNLAGLVIYALQNQ 212 Query: 245 IV 246 +V Sbjct: 213 LV 214 >gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 208 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ +LT RE+E + I+EGKT EIA LGIS TV Y K KTR+ + +A+ Sbjct: 143 REAKLTERELEVVRQIAEGKTYKEIAEHLGISEKTVATYRERAAEKLGLKTRAELVRWAL 202 Query: 242 RNNIV 246 ++ Sbjct: 203 ERGLL 207 >gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] Length = 208 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +++GKT+ EIA L +S T+ +++ I K R+ A YA+ N+ Sbjct: 147 KLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENH 206 Query: 245 IV 246 ++ Sbjct: 207 LI 208 >gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 228 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L W ++GKT+ EIA IL IS T+ ++ +IM K + ++ AI AV I Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226 Query: 246 V 246 + Sbjct: 227 I 227 >gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 212 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 221 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +EG T+ EIA L IS TV + A+IM+K R + YA++N Sbjct: 155 ELTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNG 214 Query: 245 IV 246 I+ Sbjct: 215 IL 216 >gi|86142564|ref|ZP_01061003.1| hypothetical protein MED217_06611 [Leeuwenhoekiella blandensis MED217] gi|85830596|gb|EAQ49054.1| hypothetical protein MED217_06611 [Leeuwenhoekiella blandensis MED217] Length = 243 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 FK Y H ++F + R+ E + I+EG S EIA +L ISR+TV+ + +I++K K Sbjct: 171 FKRYVGHQYENF-FSARQFEVIKGITEGLNSKEIADLLFISRHTVDTHRKNILKKARCKN 229 Query: 233 RSGAIAYAVRNNIV 246 I++ +N ++ Sbjct: 230 SVELISFCKKNGLI 243 >gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185] gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 508 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L ++ G T+ +IAV L IS NTV ++ +I K ++R+ A YA+R I Sbjct: 7 ISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYAIRTGI 66 Query: 246 V 246 V Sbjct: 67 V 67 >gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 276 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE++ L +SEG T+DEI+ LG+ NTV +Y+ MRK A R A+ Sbjct: 213 LTPREIDVLRLVSEGCTNDEISDRLGLLPNTVKSYLKHAMRKLAVSNRVQAV 264 >gi|297623791|ref|YP_003705225.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164971|gb|ADI14682.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 503 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 11/130 (8%) Query: 117 PENIT--PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQA 170 E IT AG + L +D+ + G LF + ++ D W + LA +A Sbjct: 371 AETITLGGDAGDERGLLKLFYDITERKRGEEALFRALQEVMSDTAWFSTQVMERLAQIRA 430 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 K+ LT RE + L +++GK+++ IA LG++R TV NYI+ + K Sbjct: 431 GRPKA-----APSVALTERERQVLAQLAQGKSNEAIAAELGLARQTVRNYISVLYDKIGV 485 Query: 231 KTRSGAIAYA 240 +R+ A+ +A Sbjct: 486 HSRAEAVVWA 495 >gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 209 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 147 DLTNREQEVLLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHG 206 Query: 245 IV 246 ++ Sbjct: 207 LI 208 >gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676] gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187] gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e] gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S] gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161] gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e] gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes L99] gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816] gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220] gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str. Scott A] Length = 212 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|325277292|ref|ZP_08142919.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097558|gb|EGB95777.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 219 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 179 HWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G D LT R++E L I GK++ EIA LG+S TV + + IM++ +G + Sbjct: 147 QGGSDRHNLTARQLEILRLIVRGKSTREIATGLGLSIKTVETHRSQIMKRLQIHDVAGLV 206 Query: 238 AYAVRNNIV 246 +AVR I+ Sbjct: 207 LFAVREKII 215 >gi|253997167|ref|YP_003049231.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983846|gb|ACT48704.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 263 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE+ + W+ GKT+ EI +IL IS TV N++ I++K R+ A+ Sbjct: 202 LSEREISIMEWVKAGKTNQEIGIILDISSFTVKNHMQRILKKLDVLNRAQAVT 254 >gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|218460663|ref|ZP_03500754.1| two component transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 61 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 31/54 (57%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T RE E L WIS+GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 1 TQRESEVLLWISKGKATRDIGEILGLSARTVNTHLEQIYVKLGVENRASAAVKA 54 >gi|170750849|ref|YP_001757109.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170752017|ref|YP_001758277.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657371|gb|ACB26426.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] gi|170658539|gb|ACB27594.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 486 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I G + D IA LG+SRNTV N+ A++ RK RS A+ + N Sbjct: 420 LTVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENG 478 >gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ +YQ K H D LT RE ECL W SEGK++ +I+ ILG S TV ++ Sbjct: 166 SLVDSYQ----KINTTHKKSDSILTKRETECLAWASEGKSTWDISKILGCSERTVTFHLT 221 Query: 223 SIMRKTATKTR 233 + K T R Sbjct: 222 NTQMKLNTTNR 232 >gi|150019634|ref|YP_001311888.1| two component LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906099|gb|ABR36932.1| two component transcriptional regulator, LuxR family [Clostridium beijerinckii NCIMB 8052] Length = 218 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G + LT RE++ ++ I +GK + EIA L I+ TV N I I+ K + + R+ YA Sbjct: 153 GINISLTERELKIVSMIVDGKDNKEIASSLFIAEGTVKNIITEIISKLSLRDRTQLAVYA 212 Query: 241 VRNNIV 246 V+N +V Sbjct: 213 VKNGLV 218 >gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 240 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E + RE+E L W EGKT+ EI++IL IS +TVN + ++ ++ ++ YA Sbjct: 179 EFSQRELEILKWTGEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIG 238 Query: 245 IV 246 ++ Sbjct: 239 LI 240 >gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA+ILGI+ +TV +I ++++K AI V N+ Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 250 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 187 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246 Query: 246 V 246 + Sbjct: 247 L 247 >gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023] Length = 212 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 224 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I+ G T E+A LGIS T+ + A+IM TK RS + YA+ + + Sbjct: 155 LSKRETEVLQLIALGYTQQEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHGL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 35/63 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT RE E L ++G T+ EIA L +S TV NYI+ I+ K K+R A+ A Sbjct: 136 RDNPLTAREQEILRLAAKGCTASEIAASLHLSYGTVRNYISEILNKLEVKSRIEAVRLAE 195 Query: 242 RNN 244 N Sbjct: 196 ENG 198 >gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 570 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK+F LT RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 504 GKEFGLTKRELEVLNLLSQGSRYKTIASKLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 563 >gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans] Length = 210 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNAFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 223 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L ++ G ++ EI L +S TV Y++S++RKT T R+ + +A+ + Sbjct: 160 LHLTSRESQVLNLLARGLSNGEIGQNLHLSSRTVEKYVSSLLRKTETNNRAELVRFALDH 219 Query: 244 NIV 246 +++ Sbjct: 220 HLI 222 >gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo] Length = 213 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K++D H ELT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 195 RTQAVVYAFRHHLV 208 >gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri] gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L++ N K H D LT RE ECL W SEGK++ +I+ ILG S TV ++ + Sbjct: 163 MLSSLVDNYQKINTTHKKSDSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTN 222 Query: 224 IMRKTATKTR 233 K T R Sbjct: 223 TQMKLNTTNR 232 >gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L I+EG T+ +IA L +S TV NY++SI+ K +R+ A YA R + Sbjct: 157 LSTREREILVLIAEGLTNRQIAGRLHLSEKTVKNYVSSILDKLGLSSRTQAAVYAARRH 215 >gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 509 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGIS 213 ++D W +L AN+ ++ G +LTGRE E + G EIA+ L +S Sbjct: 400 MQDASWFSRMLIEKLANVRRTNSPDAGAQLSDLTGREREVFDLLCRGLADKEIAIKLNLS 459 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV N++A+I K +R+ AI +A Sbjct: 460 PNTVRNHVATIYGKLDVHSRTEAIVWA 486 >gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 189 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 227 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ ++ L +S TV Y++S++RKTAT R+ + +A+++ + Sbjct: 166 LTPREQEVLELLTHGFSNADMGHQLHLSPRTVEKYVSSLLRKTATSNRAELVRFAMKHGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans 2-40] Length = 227 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 42/64 (65%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT R++ L + +G ++ EIA L +S +TV ++A+I+R+ K R+ A+A+A + Sbjct: 162 DHQLTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAILREFNVKNRTQAVAHARQ 221 Query: 243 NNIV 246 NI+ Sbjct: 222 KNII 225 >gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus] Length = 200 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi] Length = 250 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA+ILGI+ +TV +I ++++K AI V N+ Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 189 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4] Length = 199 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+E L +++GK ++EIA L I TV NYI++I+ K K R AI Sbjct: 138 LTEREIEVLGLVADGKNTNEIANELSIKAGTVRNYISAILDKLEVKNRIEAI 189 >gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 239 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L I+ G+++ IA +GI+ +TV ++ I+ K R+ A A A+R I Sbjct: 145 VTPREREVLELIASGQSNKRIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGI 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 237 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241 LT RE E L W + GKT EI +IL I + TV +I + MRK ++ K + AYA+ Sbjct: 176 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAI 233 >gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh 114] gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L WI+ GK++ IA ILGISR+TV+ I K R+ A + + + Sbjct: 180 LSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGL 239 Query: 246 V 246 V Sbjct: 240 V 240 >gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1] gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] Length = 237 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241 LT RE E L W + GKT EI +IL I + TV +I + MRK ++ K + AYA+ Sbjct: 176 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAI 233 >gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b] gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 240 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + RE+E L W +EGKTS EI++IL IS +TVN + ++ ++ ++ YA Sbjct: 179 DFSQRELEILKWTAEGKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAA 235 >gi|160900754|ref|YP_001566336.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366338|gb|ABX37951.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 220 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE L WISEG+++ EIA ++G S TV + + RK + I YA Sbjct: 144 GPRRALTPREASVLQWISEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIDGHAAFIKYA 203 Query: 241 V 241 V Sbjct: 204 V 204 >gi|103488066|ref|YP_617627.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978143|gb|ABF54294.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 250 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 14/136 (10%) Query: 114 HTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 H L + T P G CS GL P +I+ + L + + +A Q Sbjct: 114 HGLADGFTVPRHLPGDVTGSCSFV-------TGLGKSIPHAMLIVAEMLGAMAIASARQL 166 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + S V LT R+ +C+ W + GKT EI+ IL IS TV ++ + T Sbjct: 167 SGWTSRSVQ----PRLTDRQRDCVLWAARGKTDWEISRILDISHETVIQHLKDARERYET 222 Query: 231 KTRSGAIAYAVRNNIV 246 R+ I YA+ + ++ Sbjct: 223 HKRASLILYALYDGLI 238 >gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] Length = 219 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG + EIA L IS TV + A+IMRKT + S AYA+ + Sbjct: 157 LTQREREVLKLVAEGYQNKEIAEYLFISPKTVEKHRANIMRKTDLHSASSLTAYAIEKGL 216 Query: 246 V 246 + Sbjct: 217 L 217 >gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293] gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293] Length = 189 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262] gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262] gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL F2-208] gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378] Length = 212 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 34/48 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L +++G+T++EIA L I+++TV ++AS+MRK + R Sbjct: 155 LTAREEEVLVSVAQGRTNNEIASELYITQSTVKAHLASLMRKLGARNR 202 >gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 249 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245 Query: 246 V 246 + Sbjct: 246 L 246 >gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803] gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803] Length = 189 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|37528381|ref|NP_931726.1| hypothetical protein plu4562 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787819|emb|CAE16934.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 238 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 29/42 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ REVE + W EGKTS EIA IL IS TVN +I ++M K Sbjct: 177 LSTREVEVIRWTCEGKTSAEIADILDISTRTVNFHINNVMEK 218 >gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 240 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ +A++ Sbjct: 165 LTSREIEILDCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQ 221 >gi|120404945|ref|YP_954774.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] gi|119957763|gb|ABM14768.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] Length = 301 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ LT RE+E L +++EG T+ IA L IS TV ++ I+RK R+ A+++ Sbjct: 232 GRAHSLTRRELEVLEFVAEGATNARIARALTISEGTVKGHMKHILRKLGAANRAEAVSH 290 >gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 278 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG+++ +IA L +S TV N++ASI+ K + R+ A+ A+R Sbjct: 215 LTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQAVLVALRRG 273 >gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 241 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LTGRE E L ++ G+++ EIA L +S TV +++ +++ K + R A+ YA Sbjct: 159 GPGGSLTGREHEVLLLLARGRSNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVAAVIYA 218 Query: 241 VRNNIV 246 + ++ Sbjct: 219 YEHGLI 224 >gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 356 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L W+ +GKT+ +I ILG S T ++ + K +TR+ A A++ Sbjct: 287 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIK 345 >gi|223937694|ref|ZP_03629596.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893666|gb|EEF60125.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 210 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L RE E L W+++GK++ +IA ILGIS TV ++ I K ++R+ A A+ Sbjct: 145 LAPREAEVLLWVTQGKSNGDIASILGISEWTVKKHLLHIFEKLGVESRNAATLRAL 200 >gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi] Length = 250 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA+ILGI+ +TV +I ++++K AI V N+ Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] Length = 192 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE + L I +G T+ EIA L IS NTV ++ +I K KT SG YA+ N Sbjct: 124 ELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFYAIMNG 183 Query: 245 IV 246 I+ Sbjct: 184 II 185 >gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] Length = 241 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 158 RLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R+ ++G Y M + YD L+ REVE L W++ GK++ IA ILG+S +T Sbjct: 152 RMLQLGCQELYSRTIMLRDYDAPAPP--HLSEREVEILQWLARGKSNAVIAAILGVSPHT 209 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V+ + K R A+ A+R ++ Sbjct: 210 VDTIMRRAFVKLNASNRIAAVLKALRVGLI 239 >gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] Length = 240 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+GRE++CL+ + GKTS E A L +S +TV +Y+A +K R A+A A+R Sbjct: 179 LSGREMDCLSHAALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALR 235 >gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] Length = 215 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W++ G ++ EIA L ++ +TV ++ +I+RK + +R A YAV + + Sbjct: 153 LTPRERETLGWLARGASNKEIARALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212 >gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] Length = 215 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K++D H ELT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 137 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 196 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 197 RTQAVVYAFRHHLV 210 >gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1] gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus sp. MC-1] Length = 206 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE E + +++G+T+ EIA LGIS TV+ + +MRK T + + YA+R Sbjct: 144 VQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRM 203 Query: 244 NIV 246 +V Sbjct: 204 GLV 206 >gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 252 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 189 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 248 Query: 246 V 246 + Sbjct: 249 L 249 >gi|258651303|ref|YP_003200459.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554528|gb|ACV77470.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 933 Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I+ G+T+ +IA +S TV ++ SI RK + R+ A+A A R Sbjct: 867 ELTARELEILAAIASGRTNAQIATDFFLSTKTVMHHSVSIYRKLEVRGRAEAVALAYRTG 926 Query: 245 IV 246 ++ Sbjct: 927 LL 928 >gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 248 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 185 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 244 Query: 246 V 246 + Sbjct: 245 L 245 >gi|89902166|ref|YP_524637.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346903|gb|ABD71106.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 328 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+LT RE E L W+ +GK + +I ILG S TV ++ + K +TR+ A A+ Sbjct: 259 FKLTPREAEVLYWVVKGKINRDIGDILGSSPMTVKKHLEHVFAKLGVETRTAAAGMAM 316 >gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 253 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 190 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 249 Query: 246 V 246 + Sbjct: 250 L 250 >gi|291441518|ref|ZP_06580908.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344413|gb|EFE71369.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 200 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G LT RE+ L+ +EG EIA L +SR TV NY+A+ +RK + R AI Sbjct: 135 GARMPLTTRELSVLSLAAEGAPVAEIAARLHLSRGTVRNYMATAIRKVGARNRVDAI 191 >gi|255642661|gb|ACU21562.1| AhyR/asaR [Aeromonas hydrophila] Length = 88 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E W +EGK +IA ILGI+ TV ++ +++ K ++S AI++A++ + Sbjct: 12 LSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGM 71 Query: 246 V 246 V Sbjct: 72 V 72 >gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603] gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603] Length = 189 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 228 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L W ++GKT+ EIA IL IS T+ ++ +IM K + ++ AI AV I Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226 Query: 246 V 246 + Sbjct: 227 I 227 >gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] Length = 309 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT RE E L WI++GK++ +I ILG+S TV ++ I K + R+ A A Sbjct: 244 QHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 303 Query: 242 R 242 + Sbjct: 304 Q 304 >gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 228 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L W ++GKT+ EIA IL IS T+ ++ +IM K + ++ AI AV I Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226 Query: 246 V 246 + Sbjct: 227 I 227 >gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pyogenes M49 591] gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 213 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K++D H ELT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 195 RTQAVVYAFRHHLV 208 >gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 215 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++C+ + +G +++EIA L + +TV +++S M KT T R + +A RN + Sbjct: 154 LTPRELDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTHNRVQLVIWAFRNGV 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 215 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG ++ IA LGI+ TV ++ ++M K R+ A+A A R + Sbjct: 151 LTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGL 210 Query: 246 V 246 + Sbjct: 211 M 211 >gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 226 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241 LT RE E L W + GKT EI +IL I + TV +I + MRK ++ K + AYA+ Sbjct: 165 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAI 222 >gi|300691151|ref|YP_003752146.1| transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] gi|299078211|emb|CBJ50858.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] Length = 252 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT R G A Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237 >gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241] gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241] Length = 189 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|297155312|gb|ADI05024.1| response regulator [Streptomyces bingchenggensis BCW-1] Length = 164 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 40/85 (47%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 IG L + + G LT RE + L ++EG + EIAV L S TV N I Sbjct: 79 IGQLVSQVGALRPGAVGRLGVPLGLTPRETDVLRLVAEGMGTGEIAVKLAYSERTVKNVI 138 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + + + R+ A+AYA+R + Sbjct: 139 QGLTTRLGLRNRAHAVAYALREGYI 163 >gi|170738931|ref|YP_001767586.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193205|gb|ACA15152.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 301 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTW 196 + L P GR + R+ ++G + + G + E LT RE E L W Sbjct: 194 VALATPDGRRLQLSRIGQVG-----GDEILLRLALDGGGEIERLRRALGLTQREAEVLLW 248 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +S GK S +I IL +S TV ++ + K + R+ A A VR Sbjct: 249 VSRGKASRDIGEILSLSPRTVTKHLEQVYAKLGVENRTSASALVVR 294 >gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G + EIA LG+SR TV +I +I RK TRS A+ AV+ + Sbjct: 163 LTPREIDILWGIAKGFSYAEIASHLGLSRQTVPGHIKNIYRKLEVHTRSEAVFEAVQQGL 222 Query: 246 V 246 + Sbjct: 223 I 223 >gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 260 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L ++EG +S EIA IL IS TV + A++++K + R YA+R Sbjct: 195 DHILTPREEEVLKLVAEGHSSKEIAEILFISIKTVQRHRANLLQKLGLRDRLELTRYAIR 254 Query: 243 NNIV 246 ++ Sbjct: 255 AGLI 258 >gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 391 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G ++ E A L +S TV +YI+S +RK K R+ A+A A+R + Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389 Query: 246 V 246 + Sbjct: 390 I 390 >gi|284041551|ref|YP_003391891.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945772|gb|ADB48516.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 243 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 42/70 (60%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + L+ E+ L ++EG +++E A +L +S +TV ++ ++MRK +R+ A Sbjct: 172 DLRERRSSALSSAELRVLALVAEGSSTEEAAELLSLSPHTVRTHLRNVMRKLEASSRAHA 231 Query: 237 IAYAVRNNIV 246 +A A+R + + Sbjct: 232 VAIAIRESAI 241 >gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 211 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 151 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 187 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246 Query: 246 V 246 + Sbjct: 247 L 247 >gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] Length = 192 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE + L I +G T+ EIA L IS NTV ++ +I K KT SG YA+ N Sbjct: 124 ELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFYAIMNG 183 Query: 245 IV 246 I+ Sbjct: 184 II 185 >gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 236 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 37/56 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L W ++GK++ +IA IL +S+NTV+ +I + + K ++ A+ AV Sbjct: 175 LTERELEVLRWTADGKSAQDIAEILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAV 230 >gi|259048250|ref|ZP_05738651.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035099|gb|EEW36354.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 216 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVI 209 G++++ D + LL +S+D WG LT REVE + +++G ++ EIA Sbjct: 124 GKVVM-DTVISEALLTNTSVEKEESFDAEKWG----LTTREVELIAQVAKGLSNKEIAQT 178 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S TV N I++I+ K + R+ + +A N + Sbjct: 179 LFLSEGTVKNNISTILSKLELRDRTQLVIFAYENKL 214 >gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 189 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 225 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+ RE+E L I EG ++ EIA L +S NTV ++ IM K + R A A Sbjct: 160 GNVSNLSQRELEVLKLIVEGNSNPEIAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVA 219 Query: 241 VRNNIV 246 +R+ IV Sbjct: 220 LRSGIV 225 >gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 191 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EGKT+ EIAV+L +S TV+ + IM K + + + +AVRN + Sbjct: 130 LSSREREVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLNLHSINELVRFAVRNGL 189 Query: 246 V 246 V Sbjct: 190 V 190 >gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR] Length = 232 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S V K+ LT RE E L +++G T+ +IA L IS NTV N++ +I+ K R+ Sbjct: 141 SLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVKNHVHNILEKLGVSNRA 200 Query: 235 GAIAYAV 241 ++YA+ Sbjct: 201 KLVSYAM 207 >gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 230 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + +LT REVE L +++G S EI+ L IS +TVNN+ +I++K T AI YA Sbjct: 166 NIKLTKREVEILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYA 223 >gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 305 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT RE E L WI++GK++ +I ILG+S TV ++ I K + R+ A A Sbjct: 240 QHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 299 Query: 242 R 242 + Sbjct: 300 Q 300 >gi|239933171|ref|ZP_04690124.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 195 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G LT RE+ L+ +EG EIA L +SR TV NY+A+ +RK + R AI Sbjct: 130 GARMPLTTRELSVLSLAAEGAPVAEIAARLHLSRGTVRNYMATAIRKVGARNRVDAI 186 >gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 391 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G ++ E A L +S TV +YI+S +RK K R+ A+A A+R + Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389 Query: 246 V 246 + Sbjct: 390 I 390 >gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 208 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E LT ++EG T+ E+ L IS TV ++A I K TR+ A++ A+R Sbjct: 147 LTPREAELLTLMAEGMTNKELGKALFISEATVKTHLAHIYAKLGVDTRAAAVSVALRRQ 205 >gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 307 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT RE E L WI++GK++ +I ILG+S TV ++ I K + R+ A A Sbjct: 242 QHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 301 Query: 242 R 242 + Sbjct: 302 Q 302 >gi|294010459|ref|YP_003543919.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673789|dbj|BAI95307.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 253 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ R+VEC+ +++GK+ EI ILG+SR+TV+ Y+ S R+ + R+ + AVR+ Sbjct: 187 LSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245 >gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 222 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W+++G EIA L +S TV N+I+ I+ K R+ A+A+A R+ + Sbjct: 153 LSERELEVLYWLAQGLNGQEIAERLSLSDKTVKNHISHILAKLKVSDRTQAVAWAWRSGL 212 >gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE + L WI++GK++ IA IL +S +TV+ ++ SI RK R+ A V Sbjct: 169 KEAALSPREKQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGV 228 Query: 242 RNNIV 246 + ++ Sbjct: 229 GSGVL 233 >gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M K + +G ++LT +E E LT ++EG ++ EIA ++ +S TV NY++++M K + Sbjct: 135 MQKKKEFPYGA-YQLTKKEYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVR 193 Query: 232 TRSGA 236 R+ A Sbjct: 194 DRTQA 198 >gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125] gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125] Length = 210 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+ L I EG + E+A LG+S TV N + I+ K A + R+ YA+R Sbjct: 147 DPTLTPREIAILKCIGEGLNNKEVAERLGLSVGTVKNQTSQILDKLALRDRTQLAIYAIR 206 Query: 243 NNIV 246 + +V Sbjct: 207 HRLV 210 >gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 213 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K++D H ELT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 135 IKAHDQHPDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 195 RTQAVVYAFRHHLV 208 >gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] Length = 254 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL W +EG T+ +IA L S V+ ++AS M K K R A+ A Sbjct: 190 IHLTKRERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVRATHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|17546614|ref|NP_520016.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428913|emb|CAD15597.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 252 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT R G A Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237 >gi|331646293|ref|ZP_08347396.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M605] gi|320196482|gb|EFW71105.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli WV_060327] gi|330910850|gb|EGH39360.1| transcriptional regulator CsgD for 2nd curli operon [Escherichia coli AA86] gi|331045045|gb|EGI17172.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M605] Length = 216 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I+EG + +IA LGIS TV +I ++ K R+ A+ YA R + Sbjct: 156 LTAREGEVLTLIAEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYREGL 215 >gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 269 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 206 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 265 Query: 246 V 246 + Sbjct: 266 L 266 >gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 180 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 239 Query: 246 V 246 + Sbjct: 240 L 240 >gi|94497064|ref|ZP_01303637.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] gi|94423436|gb|EAT08464.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] Length = 253 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ R+VEC+ +++GK+ EI ILG+SR+TV+ Y+ S R+ + R+ + AVR+ Sbjct: 187 LSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245 >gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 254 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL W ++G T+ EIA L S V ++AS M K K R A+ A Sbjct: 190 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|184201100|ref|YP_001855307.1| putative two-component response regulator [Kocuria rhizophila DC2201] gi|183581330|dbj|BAG29801.1| putative two-component response regulator [Kocuria rhizophila DC2201] Length = 217 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE E + I++G T+DEIA +S N+V +YI S RK + RS A+ + Sbjct: 141 GRRTGLSAREAEVIALITQGFTNDEIARNCYLSINSVKSYIRSAYRKMGVERRSQAVLWG 200 Query: 241 VRNNI 245 V++ + Sbjct: 201 VQHGM 205 >gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 225 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 162 LTRRECEVLQLLADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKN 219 >gi|312891129|ref|ZP_07750652.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296437|gb|EFQ73583.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 213 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++T +E+E L T EIA ++ +S TV+NY S+ +K K+R+G + YA++N Sbjct: 149 LDITKKEMEFLKLACSELTYKEIADLMFVSPRTVDNYRESLFQKLTIKSRTGLVLYAIQN 208 Query: 244 NI 245 +I Sbjct: 209 DI 210 >gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp. aureus ED133] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|253773935|ref|YP_003036766.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161147|ref|YP_003044255.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B str. REL606] gi|300928412|ref|ZP_07143945.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|242376846|emb|CAQ31561.1| CsgD transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253324979|gb|ACT29581.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973048|gb|ACT38719.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli B str. REL606] gi|253977262|gb|ACT42932.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BL21(DE3)] gi|300463575|gb|EFK27068.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|323962640|gb|EGB58218.1| luxR family protein regulatory protein [Escherichia coli H489] gi|323973370|gb|EGB68559.1| luxR family protein regulatory protein [Escherichia coli TA007] Length = 216 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803] gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803] Length = 221 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ GK + EIA IL +S TV +I I++K R+ A A+R I Sbjct: 160 LTKREIDVLQLLAYGKQNHEIAKILCVSEGTVKTHIHKILQKLEVTDRTQAAVMAIRQKI 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|307296696|ref|ZP_07576515.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877825|gb|EFN09050.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 253 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ R+VEC+ +++GK+ EI ILG+SR+TV+ Y+ S R+ + R+ + AVR+ Sbjct: 187 LSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245 >gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] Length = 267 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 204 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 263 Query: 246 V 246 + Sbjct: 264 L 264 >gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 75 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L +S TV N+I+++M+K K RS A+ VR Sbjct: 13 LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVR 69 >gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus WK1] Length = 89 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +H + LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ Sbjct: 19 IHLNQKPLLTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 78 Query: 238 AYAVR 242 +R Sbjct: 79 VELLR 83 >gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4] gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 250 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L WI +GK+S +I+ IL IS TV ++ ++MRK +R A+A A+ Sbjct: 187 ITIREREVLNWIKKGKSSWDISTILAISERTVKFHVDNVMRKLDAVSRIHAVAVAL 242 >gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp. aureus ST398] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048] gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048] Length = 215 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ GK + EIA IL +S TV +I +I++K R+ A A+R I Sbjct: 154 LTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIRKKI 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EGK++ I L IS TV N+++SI++K + R+ A+ +++N Sbjct: 173 LTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSILQKLNVQDRTQAVVISIKNG 231 >gi|207742850|ref|YP_002259242.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609] gi|206594244|emb|CAQ61171.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609] Length = 252 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT R G A Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237 >gi|223934862|ref|ZP_03626781.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896315|gb|EEF62757.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 213 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG+T+ +IA LGIS TV + +M K +G YA+ I Sbjct: 144 LTSREAEVLQLIAEGQTNKQIAFELGISAKTVEKHRQQVMNKLKIHDVAGLTRYALSKGI 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 217 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ L+ + +G ++ +IA L +S +TV +++ SI RK K R AI +A R Sbjct: 155 EMELTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|121606230|ref|YP_983559.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120595199|gb|ABM38638.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] Length = 275 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E + W++ GK EIA +L IS TV ++ I K +TR+ A+ A+ Sbjct: 204 LTQREAEVMHWLACGKMDAEIAALLAISPRTVQKHLEHIYVKLGVETRTAAVMRAL 259 >gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 270 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 207 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 266 Query: 246 V 246 + Sbjct: 267 L 267 >gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 137 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W GKT+ EI+ ILGIS T+ ++++ RK R+ A+ A Sbjct: 76 DLTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAARKIGANNRAQAVVMASARG 135 Query: 245 IV 246 ++ Sbjct: 136 LI 137 >gi|86740248|ref|YP_480648.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567110|gb|ABD10919.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 156 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE+E LT ++ G ++ E A L I TV Y+ SIMRK + R+ A+ A ++ Sbjct: 93 FRLTLREMEVLTLVATGCSNVEAAEHLTIRAETVKTYMRSIMRKMGVRNRTAAVHAARQS 152 Query: 244 NIV 246 ++ Sbjct: 153 GLL 155 >gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EI L +S TV Y++S++RKT T R+ + +A+ + + Sbjct: 184 LTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGL 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|320322570|gb|EFW78663.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330177|gb|EFW86163.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875366|gb|EGH09515.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987495|gb|EGH85598.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 209 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ G LT R+ E L ++ GKT+ EIA LGIS TV +++S+++ TRS A Sbjct: 138 DLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVSTRSAA 197 Query: 237 IA 238 A Sbjct: 198 AA 199 >gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 264 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G ++EIA+ L IS TVN ++ +I RK TR+ A+++A + Sbjct: 204 LSAREREVLRLVATGYVTEEIALQLTISAQTVNAHVKNIYRKLHAHTRAQAVSFASHRGL 263 Query: 246 V 246 + Sbjct: 264 L 264 >gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE++ L + +GKT+ EIA L +S T+ +++ I K R+ A YA++NN Sbjct: 146 KLSKREIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNN 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE++ L + +GKT+ EIA L +S T+ +++ I K R+ A YA++NN Sbjct: 146 KLSKREIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNN 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L WI+EGKT EI+ IL +S + V+ I K R A+A A+R+ I Sbjct: 179 LTKREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGI 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] Length = 217 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ L+ + +G ++ +IA L +S +TV +++ SI RK K R AI +A R Sbjct: 155 EMELTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|83749981|ref|ZP_00946930.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551] gi|83723351|gb|EAP70580.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551] Length = 263 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT R G A Sbjct: 194 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 248 >gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI] gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 209 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + H G D LT RE E L W++ G ++DEIA L +S TV ++ M K + R Sbjct: 147 RTGEPHPGLD-SLTARETEILGWVATGLSNDEIAERLVVSPATVRTHVGRAMMKLRARDR 205 Query: 234 SGAIAYAVRNNI 245 + + A R++I Sbjct: 206 AQLVVIAYRSDI 217 >gi|166367722|ref|YP_001659995.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090095|dbj|BAG04803.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 223 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S+ + + LT RE E L WI++ K++ IA ++G S TV ++ I K +TR+ Sbjct: 142 SFSIAALELLGLTKREAEVLFWIAQDKSNAAIAKVIGCSEGTVRKHLEHIHGKLGVQTRT 201 Query: 235 GAIAYAVRN 243 A+ A+ Sbjct: 202 AAVIVALEK 210 >gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus] Length = 222 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 33/58 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT REVE ++EGKT+ +IA L IS TV ++ASI RK + R G A Sbjct: 153 DSVLTEREVEIAGKVAEGKTNSDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRA 210 >gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2] gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1] Length = 160 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYA 240 + LT RE E L W + GKT EI +IL I + TV +I + MRK ++ K + AYA Sbjct: 96 NVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYA 155 Query: 241 V 241 + Sbjct: 156 I 156 >gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 189 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIARALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|300703751|ref|YP_003745353.1| transcriptional regulator protein, luxr family [Ralstonia solanacearum CFBP2957] gi|299071414|emb|CBJ42733.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CFBP2957] Length = 252 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT R G A Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237 >gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 210 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++GK + EIA L I+ TV ++++I+ K + R+ A+ YA +N Sbjct: 148 QLTEREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNG 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] Length = 217 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ L+ + +G ++ +IA L +S +TV +++ SI RK K R AI +A R Sbjct: 155 EMELTRRELQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 245 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EI L +S TV Y++S++RKT T R+ + +A+ + + Sbjct: 184 LTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGL 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754] gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus COL] gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754] gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus O11] gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus O46] gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus T0131] gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|110637079|ref|YP_677286.1| fimbrial Z protein; signal transducer [Cytophaga hutchinsonii ATCC 33406] gi|110279760|gb|ABG57946.1| fimbrial Z protein; probable signal transducer [Cytophaga hutchinsonii ATCC 33406] Length = 212 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 43/75 (57%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + K + + D + RE+E L +I +G+++++IA IL IS T+ + +IM+K K Sbjct: 135 LLKGFLANQTSDSIFSDRELEVLRYICKGRSNEQIADILFISEKTIATHRRNIMKKAGVK 194 Query: 232 TRSGAIAYAVRNNIV 246 + I +A+ N IV Sbjct: 195 KSTELIVWALDNKIV 209 >gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L] gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Ames] gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Sterne] gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L] gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] Length = 209 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|325972442|ref|YP_004248633.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027680|gb|ADY14439.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 314 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F + K F LT RE E + I++G T+ EIA LGIS TV +I ++ +K ++ Sbjct: 245 FGELSLETAKRFLLTAREQEMASLIAQGLTNKEIAFRLGISEATVRTHIYNLFQKVGVQS 304 Query: 233 R 233 R Sbjct: 305 R 305 >gi|325104954|ref|YP_004274608.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324973802|gb|ADY52786.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 235 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 52/195 (26%) Query: 57 GASHFLL-----VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111 G S +LL + + FQ+ KL + W + + R + L + + +L + + CP Sbjct: 86 GMSGYLLEGDFSKQHNFFQQVKLHKEIDYTWFYTMSRIIKLQTQQE---LLHKLMLISCP 142 Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + AG+DN V R GR++ +D N Sbjct: 143 I-----------AGIDNL-------VKRF----------GRVLDQD-------------N 161 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + ++ K LT RE E ++ +S+GK+S EIA +L IS NTV + +I++K K Sbjct: 162 YIRQHYPNFAK---LTKREKEIISLLSDGKSSPEIADMLFISANTVITHRKNIVKKLGMK 218 Query: 232 TRSGAIAYAVRNNIV 246 + + + +A+ ++V Sbjct: 219 SFAHLVRFAIAFDLV 233 >gi|289705916|ref|ZP_06502294.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58] gi|289557362|gb|EFD50675.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58] Length = 169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ L EG + IA L ++ TV NY++S M+KT T TR A +A R Sbjct: 106 DCPLTDRELDALRATGEGYSVARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARR 165 Query: 243 NN 244 + Sbjct: 166 HE 167 >gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635] gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|207723944|ref|YP_002254342.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2] gi|206589151|emb|CAQ36113.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2] Length = 252 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT R G Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVG 232 >gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus RF122] gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus aureus RF122] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 249 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245 Query: 246 V 246 + Sbjct: 246 L 246 >gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 165 LAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +A Y +++ K + K L+ RE+E IS+G ++ EIA +L IS TV NYI S Sbjct: 130 IALYVSDVLKRTSKQLFEKTQNLSERELEIAKLISQGYSNKEIARMLFISEGTVRNYITS 189 Query: 224 IMRKTATKTRSGAIAY 239 I++K K R+ Y Sbjct: 190 ILQKLNLKNRTQIAVY 205 >gi|205372373|ref|ZP_03225187.1| two component LuxR family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 212 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ELT RE E L +S+G ++ E+A LG+S TV NY+A+I+ K R Sbjct: 156 ELTSRESEVLFLLSKGASNSEVAETLGLSNKTVYNYVANILNKLQVSDR 204 >gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus N315] gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300] gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224] gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796] gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315] gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300] gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224] gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus aureus 04-02981] gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796] gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp. aureus CGS03] gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus TW20] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 187 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 123 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 182 Query: 245 IV 246 +V Sbjct: 183 LV 184 >gi|260466579|ref|ZP_05812767.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029585|gb|EEW30873.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 525 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L I+ G T+ E A L IS T +++I S+ K TR+ A YAV + + Sbjct: 458 MTPREIEVLRLIAAGLTAKEAARKLDISPKTADHHIQSVYAKIGVTTRAAAALYAVEHGL 517 Query: 246 V 246 V Sbjct: 518 V 518 >gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 189 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT+ EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTASEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 199 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D +G++ LT RE E L +++GK + EIA L I+ TV NYI+ I+ K R A Sbjct: 129 DEAYGQENPLTEREKEVLLLVADGKNTKEIASQLYITTGTVRNYISVILDKLGVSNRIEA 188 Query: 237 IAYA 240 I ++ Sbjct: 189 IMHS 192 >gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 226 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G T +EIA LG+SR+TV ++I +I RK TR A+ AV+ + Sbjct: 164 LTPRELDILWGIAKGLTYNEIADRLGLSRHTVPSHIKAIYRKLQVATRGEAVYEAVQCGL 223 Query: 246 V 246 + Sbjct: 224 I 224 >gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 237 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194 IGL+ + G I L E G ++ ANM + +H F ELT RE E L Sbjct: 125 IGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLAKFVPEYAVELTARERETL 184 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241 W + GKT EI I+ + TV ++ + MRK AT A+ A+ Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAM 232 >gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 204 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++GK + EIA L I+ TV ++++I+ K + R+ A+ YA +N Sbjct: 142 QLTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNG 201 Query: 245 I 245 + Sbjct: 202 L 202 >gi|84501462|ref|ZP_00999667.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] gi|84390753|gb|EAQ03241.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] Length = 232 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LTGRE++ L +S GK + IA LG+S +TV +I ++ K + R+GA + ++N Sbjct: 163 LTGRELQVLELVSAGKQNKSIANDLGLSEHTVKLHIHHVLAKLNVRNRTGATTWFLQN 220 >gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 227 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +N S +H K LT RE E L ++ G ++ +I L +S TV Y++S++RKT Sbjct: 149 SNHALSTQIHAPKLLSSLTTREQEVLELLTHGLSNADIGNQLHLSPRTVEKYVSSLLRKT 208 Query: 229 ATKTRSGAIAYAVRNNIV 246 T R+ + +A+++ +V Sbjct: 209 LTSNRAELVRFAMKHGLV 226 >gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803] gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803] Length = 92 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 39/59 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + L+ RE+E + +SEG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 NVSLSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 69 >gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 202 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE + L + G+T+ EIA LG++R+TV Y+ + MRK + R IA A + Sbjct: 139 DTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQ 198 Query: 243 NNIV 246 + ++ Sbjct: 199 SGLL 202 >gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans TK24] Length = 252 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 189 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 248 Query: 246 V 246 + Sbjct: 249 L 249 >gi|269125106|ref|YP_003298476.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310064|gb|ACY96438.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 954 Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 38/59 (64%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE+E L +++G+T+ EIA +L IS TV+ ++++I+ K TR A A A R Sbjct: 891 YGLTPRELEVLRLVAQGRTNREIAEVLFISAKTVSVHVSNILAKLQVPTRGEAAATAHR 949 >gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 253 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 181 GKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G D L+ RE E L ++ G TS EI L IS TVN +I +I RK ++R+ A+ Sbjct: 186 GSDMSDRLSSRECEVLRMVASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVR 245 Query: 239 YA 240 +A Sbjct: 246 FA 247 >gi|170077264|ref|YP_001733902.1| LuxR family transcriptional regulator [Synechococcus sp. PCC 7002] gi|169884933|gb|ACA98646.1| transcriptional regulator protein, LuxR family [Synechococcus sp. PCC 7002] Length = 91 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + L+ RE+E + ++ G T+ EIA L IS+ TV+N+I++I+ KTAT R + +A Sbjct: 7 ASEAALSEREIEIVDLVAAGLTNHEIAARLDISKRTVDNHISNILTKTATDNRVSLVRWA 66 Query: 241 VR 242 ++ Sbjct: 67 LQ 68 >gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 455 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G ++ EIA L IS NTV ++ +I K +R+ A YA+RN I Sbjct: 9 LSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEATLYAIRNGI 68 Query: 246 V 246 Sbjct: 69 T 69 >gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 240 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRII--LRDRLWEIGLLAA 167 VF TL + D SL + + G + PK G++I LR R+ + A Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLR-RMTYVNEAGA 157 Query: 168 YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + + V + G++ LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 158 MAESGTREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217 Query: 226 RKTATKTRSGAIAYAVR 242 +K R+ A+ +++ Sbjct: 218 QKMEVDDRTQAVINSIK 234 >gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 260 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ IA L IS TV N++++I++K R+ A+ A++N Sbjct: 197 LTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNG 255 >gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 96 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+GRE+E L ++ G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 12 LSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWALQ 68 >gi|148553756|ref|YP_001261338.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148498946|gb|ABQ67200.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 904 Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE E L I EG +S EIA + +S TV Y S+ RK RS AI+YA ++NI Sbjct: 832 LGPREREVLDCIVEGLSSKEIAWRMSLSVGTVLGYRKSLYRKIGVNCRSAAISYARQSNI 891 >gi|29829791|ref|NP_824425.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606900|dbj|BAC70960.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 DF L+ REVE + I+ G + +IA IS TV N+I I K + TRS AIA+ Sbjct: 176 DFGLSSREVEVMDLIAAGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIAH 232 >gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L + G ++D+IA L IS TV ++I SI K + R+ AI +A N + Sbjct: 158 LTAREVDVLGLVGRGLSNDDIAAELVISIVTVKSHIGSIFTKLGVRNRAEAIVWAFDNGV 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 216 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ REV+ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 150 ELSEREVQILRLVAQGYTNLEIAAELSLSEKTVRNRLSDIFQKLHLNNRTQAALYALREG 209 Query: 245 IV 246 + Sbjct: 210 LA 211 >gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 219 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + EGKT+ EI L +S TV N+++ I+ K RS A A+ R ++ Sbjct: 151 LSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKLGVSNRSQAAAFMARRSV 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|229589665|ref|YP_002871784.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361531|emb|CAY48407.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 504 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L I EG EIA+ L ++ NTV N++A++ K +RS AI +A Sbjct: 435 DLTARERDVLGLICEGLADKEIALRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWA 490 >gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 215 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L +++G+T+ EIA L I+ +TV ++AS+MRK + R Sbjct: 155 LTAREEEVLVTVAQGRTNSEIASQLFITSSTVKAHVASLMRKLGARNR 202 >gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 215 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L ++EG ++ EIA L IS TV+ + A+I+ K + R YA+R Sbjct: 150 DTILTPREEEVLKLVAEGYSTREIAATLSISAKTVDRHRANILAKLGLRDRLALTRYAIR 209 Query: 243 NNIV 246 ++ Sbjct: 210 AGLI 213 >gi|295695307|ref|YP_003588545.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410909|gb|ADG05401.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 75 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I+++M+K K RS A+ VR Sbjct: 13 LTAREREVFELLVQDKTTREIAEQLYISEKTVRNHISNVMKKLNVKGRSQAVVELVR 69 >gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676] gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676] Length = 214 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ GK + EIA IL +S TV +I +I++K R+ A A+R I Sbjct: 153 LTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQKLDVTDRTQAAVMAIRKKI 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 211 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ +LT RE+E L ++EGK++ EIA L IS TV +I +I+ K R+ A+ A+ Sbjct: 143 QESDLTDRELEVLGELTEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITAL 202 Query: 242 RNNI 245 R I Sbjct: 203 RRGI 206 >gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905] gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905] Length = 210 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++GK + EIA L I+ TV ++++I+ K + R+ A+ YA +N + Sbjct: 149 LTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208 >gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTSD 204 +GR ++ D + +AA + F+ +D LT RE+E L I+ G ++ Sbjct: 125 RGRYLINDAVLARPNVAARVLHQFRELAATEEEDSASLFAPLTSREIEILDCIARGLSNK 184 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EIA L IS TV N+I SI+ K R+ A+ A++ Sbjct: 185 EIANELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKG 224 >gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005] Length = 213 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K++D H ELT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVGD 194 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 195 RTQAVVYAFRHHLV 208 >gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] Length = 227 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++EG+++ IA LGIS TV ++ +I+RK +R A AV+ Sbjct: 152 ELTPREGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVLAVQQG 211 Query: 245 I 245 + Sbjct: 212 L 212 >gi|194438019|ref|ZP_03070112.1| transcriptional regulator CsgD [Escherichia coli 101-1] gi|194422955|gb|EDX38949.1| transcriptional regulator CsgD [Escherichia coli 101-1] Length = 190 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 98 VLRGECYFTQKLASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFIS 157 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187 >gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 240 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRII--LRDRLWEIGLLAA 167 VF TL + D SL + + G + PK G++I LR R+ + A Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIHQLR-RMTYVNEAGA 157 Query: 168 YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + + V + G++ LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 158 MAESGSREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217 Query: 226 RKTATKTRSGAIAYAVR 242 +K R+ A+ +++ Sbjct: 218 QKMEVDDRTQAVINSIK 234 >gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 242 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W +EGKT EI +++GI+ V+ ++ S K T R+ +A A+R+ + Sbjct: 181 LSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGL 240 Query: 246 V 246 + Sbjct: 241 I 241 >gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] Length = 225 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Query: 170 ANMFKSY-----DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ANM +S V + ELT RE+E L +++ G ++ IA L ++ +TV Y+ +I Sbjct: 138 ANMVQSLIKPAKPVEENRLDELTARELEVLGYLAAGHSNKIIARSLDLAESTVKVYVQNI 197 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RK +R A YAV++ + Sbjct: 198 LRKLELTSRVQAAVYAVQHKV 218 >gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C] gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C] Length = 270 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 207 LTDRELEVLKLVATGMNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 266 Query: 246 V 246 + Sbjct: 267 L 267 >gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1067 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 I+L + ++G+ + QA + +S L+ RE E L ISEG+++ EIA L I Sbjct: 984 ILLCKQEQQMGVPSGEQAELVES----------LSERECEVLRHISEGRSNREIARQLVI 1033 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +TV ++I +I K K+R+ A+ A R N++ Sbjct: 1034 ALSTVKSHIRAIYAKLGVKSRTQALIQARRLNLL 1067 >gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 213 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L I+EG T+ +I + +S TV NY++SI+ K +R+ A YA++ Sbjct: 152 LSAREREILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGMTSRTQAAVYALKK 209 >gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response regulator) [Geobacillus kaustophilus HTA426] Length = 224 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 161 LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNG 219 >gi|315646876|ref|ZP_07899991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] gi|315277806|gb|EFU41130.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] Length = 100 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 172 MFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M S + G + T RE+E L I EG +++EIA +L IS TV YI +I +K Sbjct: 20 MISSQSMGAGISEIHFTKRELELLVLIMEGSSNEEIAQMLMISTGTVKRYIHNIYQKLEV 79 Query: 231 KTRSGAIAYAVRNNIV 246 K R A+ N+++ Sbjct: 80 KNRVQAVKKIKENHLI 95 >gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L +++G + EIA +L IS TV + A IM K K+R + YA++ + Sbjct: 153 LSTREVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKIMEKLNLKSRPELVEYAIKKKL 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|239816808|ref|YP_002945718.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803385|gb|ACS20452.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 161 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + + W+S GKT EIA +L IS TV+ ++ + K +TR+ A+ A+ Sbjct: 100 LTPREGDVMHWLSRGKTDAEIAALLEISPRTVHKHLEHVYVKLGVETRTAAVVRAL 155 >gi|298292643|ref|YP_003694582.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296929154|gb|ADH89963.1| transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 284 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 19/110 (17%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------------ELTGREVECLTW 196 GR DR + LL AY+A++ +SY + ELT R++E +W Sbjct: 157 GRAAFSDR--QRDLLEAYRAHVLRSYRQACDRTLASMTPTDRLRIAFPELTPRQLEVASW 214 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ GK++++IA IL + T+ ++ +I K G +A AV + V Sbjct: 215 VARGKSNEDIATILDVGIETIKAHVKAIHAKIGA---DGRLAIAVMAHTV 261 >gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE + L + G+T+ EIA LG++R+TV Y+ + MRK + R IA A + Sbjct: 147 DTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQ 206 Query: 243 NNIV 246 + ++ Sbjct: 207 SGLL 210 >gi|289627087|ref|ZP_06460041.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646654|ref|ZP_06477997.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869632|gb|EGH04341.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330888707|gb|EGH21368.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 209 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ G LT R+ E L ++ GKT+ EIA LGIS TV +++S+++ TRS A Sbjct: 138 DLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSAA 197 Query: 237 IA 238 A Sbjct: 198 AA 199 >gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 267 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L W++ GKT+ EI IL IS TV N++ + +K R+ A+ Sbjct: 206 LTEREAEILKWVALGKTNPEIGSILEISAFTVKNHMQRVFKKLDVSNRAQAVG 258 >gi|148240680|ref|YP_001226067.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849219|emb|CAK24770.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 230 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 7/125 (5%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDVHWG--- 181 NR + T +AR ++G+ L + + R L A + + ++ D H Sbjct: 106 NRPSAETLKIAR-QLGVDALLDERSVEKRSGALIQALAALQEGSRYEDPRLQDEHQAPHT 164 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + L+GR++E L ++EG ++ IA L IS NTV ++++ IM + R+ A++ A+ Sbjct: 165 SNKTLSGRQLEILALVAEGLSNRVIAQQLQISSNTVRDHLSEIMLRLDVNNRASAVSSAL 224 Query: 242 RNNIV 246 R ++ Sbjct: 225 RRGLM 229 >gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7] gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] Length = 193 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REV+ L I +G T+ EIA L IS NTV + +I K KT SG YA+ N Sbjct: 125 DLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNG 184 Query: 245 IV 246 I+ Sbjct: 185 II 186 >gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 215 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG ++ IA LGI+ TV ++ ++M K R+ A+A A R + Sbjct: 151 LTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGL 210 Query: 246 V 246 + Sbjct: 211 M 211 >gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 221 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 161 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 219 >gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A QA++F ++V E LT RE + L +++G+++ +IA L I +TV ++ I+ Sbjct: 126 APQASIFLLHEVREPNLPENLTEREADVLRLLAQGRSNKDIARHLHIVEDTVKTHVRHIL 185 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K ++R+ A YA R N+V Sbjct: 186 SKLGVQSRTQAALYATRLNLV 206 >gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 159 LWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 ++E G L + A + K +D EL+ RE++ L + G+++ IA+ L IS NT Sbjct: 118 IYEGGAALQSGIAARVLKRLATEPAED-ELSQRELDVLQLLVRGESNKAIALSLNISENT 176 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++++ I K ++R+ A+A A++ +V Sbjct: 177 IKSHVSHIFSKLDVRSRAEAVAVALQRGLV 206 >gi|257437613|ref|ZP_05613368.1| DNA-binding response regulator, LuxR family [Faecalibacterium prausnitzii A2-165] gi|257199920|gb|EEU98204.1| DNA-binding response regulator, LuxR family [Faecalibacterium prausnitzii A2-165] Length = 210 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243 +LT RE+E L + EG +EIA LGIS TV +++S++ KT R+ AIA +N Sbjct: 142 QLTPREIEVLRLVCEGLEYEEIAAELGISSRTVKRFVSSLLEKTGYSNRTRLAIAVTKKN 201 Query: 244 NIV 246 I+ Sbjct: 202 FIL 204 >gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 223 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L+ ++ GKT+ EIA L I+ TV +I +I++K R+ A+ A++ + Sbjct: 160 LTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQAVLVALQKQL 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 251 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 188 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 247 Query: 246 V 246 + Sbjct: 248 L 248 >gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 236 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ A++ Sbjct: 166 LTSREIEILDCIARGLSNKEIASELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKG 224 >gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter xylosoxidans A8] Length = 237 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W ++GKTS +++ IL I+ +TV + + + K + R+ A+A A Sbjct: 176 LTRRETEILKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAA 231 >gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 211 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|170768176|ref|ZP_02902629.1| transcriptional regulator CsgD [Escherichia albertii TW07627] gi|170122942|gb|EDS91873.1| transcriptional regulator CsgD [Escherichia albertii TW07627] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|152966411|ref|YP_001362195.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] gi|151360928|gb|ABS03931.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] Length = 151 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L ++EG + +IA LG S NT+ ++A+I RK ++ + A+ A R Sbjct: 71 LTAREAETLQLVAEGLSGAQIAERLGRSANTIAQHLATIRRKYGVRSSTAAVEAARR 127 >gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] Length = 222 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGIS 213 D L E + A +F DV +D F LT RE L ++++G ++ E+A + IS Sbjct: 116 DELLETAITVASGKMVFPFMDVRELQDDPLFMLTKREKIILQFLADGSSNKELAESMKIS 175 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239 NTV +++++ K K RS AI++ Sbjct: 176 INTVKFHLSNLYEKLGVKNRSQAISF 201 >gi|293409411|ref|ZP_06652987.1| conserved hypothetical protein [Escherichia coli B354] gi|291469879|gb|EFF12363.1| conserved hypothetical protein [Escherichia coli B354] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] Length = 245 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 RE E L W S GKT EI++ILGI R+TV +I +++RK AI + Sbjct: 184 RENEILYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGI 236 >gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans] Length = 202 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL W ++G T+ EIA L S V ++AS M K K R A+ A Sbjct: 138 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 197 Query: 244 NIV 246 ++ Sbjct: 198 RLL 200 >gi|332704010|ref|ZP_08424098.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332554159|gb|EGJ51203.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 210 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D H L+ RE + L I++GKT EIA L +S T++ Y A I+ K K + Sbjct: 140 DSHKSSHEFLSDREYQVLCMIAQGKTVSEIADTLKLSVKTISTYRARILEKMKMKNNAEL 199 Query: 237 IAYAVRNNIV 246 YA++N +V Sbjct: 200 TYYAIQNGLV 209 >gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13] gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13] gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] Length = 193 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REV+ L I +G T+ EIA L IS NTV + +I K KT SG YA+ N Sbjct: 125 DLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNG 184 Query: 245 IV 246 I+ Sbjct: 185 II 186 >gi|296129573|ref|YP_003636823.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296021388|gb|ADG74624.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 137 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+ L ++EG+T+ I LG+S TV +++A I RK T R+ +A A+RN Sbjct: 75 DLSARELSVLARVAEGRTNRLIGEELGLSALTVKSHLARISRKLGTGDRAELVAIAIRNR 134 Query: 245 IV 246 ++ Sbjct: 135 MI 136 >gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 454 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L ++ G T+ +IA L IS NTV ++ +I K +R+ A YAVR+ Sbjct: 8 QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRSG 67 Query: 245 IV 246 IV Sbjct: 68 IV 69 >gi|300788090|ref|YP_003768381.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299797604|gb|ADJ47979.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 771 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 33/50 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+GRE E +S+G+T+ +IA LG+S TV Y+A I +K A +R+ Sbjct: 692 QLSGREREISRLVSDGRTNQQIARTLGLSHKTVETYLARIFKKLALCSRA 741 >gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 210 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+ GK++ EIA L I+ TV ++++I+ K + R+ A YA +N Sbjct: 148 DLTTREREVLQLIAAGKSNQEIADELFITLKTVKTHVSNILSKLGVEDRTQATIYAFQNQ 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|293414338|ref|ZP_06656987.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185] gi|291434396|gb|EFF07369.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|126658803|ref|ZP_01729947.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126619901|gb|EAZ90626.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 224 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L ++ G ++ EI L +S T+ Y++S++RKT T R+ + +A+ + Sbjct: 161 LDLTRRESEVLDLLTTGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDH 220 Query: 244 NIV 246 ++V Sbjct: 221 HLV 223 >gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] Length = 217 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 17/122 (13%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 D L + R+ G +LL + GRII ++A S +H Sbjct: 105 DTDASELIGAIRRVHAGEVLLDAELAGRII-----------QDFRAKKESSLPLHA---- 149 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE++ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 150 ELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209 Query: 245 IV 246 + Sbjct: 210 LA 211 >gi|317057055|ref|YP_004105522.1| LuxR family two component transcriptional regulator [Ruminococcus albus 7] gi|315449324|gb|ADU22888.1| two component transcriptional regulator, LuxR family [Ruminococcus albus 7] Length = 211 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE+E L ++ G T+ ++A LGIS NTV +++ S++ KT ++R+ Sbjct: 144 ELTERELEILRIVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRT 193 >gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 250 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 187 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246 Query: 246 V 246 + Sbjct: 247 L 247 >gi|218660891|ref|ZP_03516821.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 65 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E + ++ GKT+ EI ILGIS TVN +I++ K + +A A+RN I Sbjct: 4 VTPREREIIGCMAAGKTAAEIGAILGISPITVNTHISNAKAKLGVFKETALVAAALRNGI 63 Query: 246 V 246 + Sbjct: 64 I 64 >gi|82544494|ref|YP_408441.1| DNA-binding transcriptional regulator CsgD [Shigella boydii Sb227] gi|157160562|ref|YP_001457880.1| DNA-binding transcriptional regulator CsgD [Escherichia coli HS] gi|170020563|ref|YP_001725517.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ATCC 8739] gi|188492464|ref|ZP_02999734.1| transcriptional regulator CsgD [Escherichia coli 53638] gi|300918637|ref|ZP_07135219.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|312971173|ref|ZP_07785351.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1827-70] gi|81245905|gb|ABB66613.1| putative 2-component transcriptional regulator for 2nd curli operon [Shigella boydii Sb227] gi|157066242|gb|ABV05497.1| transcriptional regulator CsgD [Escherichia coli HS] gi|169755491|gb|ACA78190.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|188487663|gb|EDU62766.1| transcriptional regulator CsgD [Escherichia coli 53638] gi|300414180|gb|EFJ97490.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|309701312|emb|CBJ00613.1| probable csgab operon transcriptional regulator [Escherichia coli ETEC H10407] gi|310336375|gb|EFQ01561.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1827-70] gi|323937781|gb|EGB34045.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|332094032|gb|EGI99084.1| putative csgAB operon transcriptional regulatory protein [Shigella boydii 3594-74] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074] gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074] Length = 267 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 204 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 263 Query: 246 V 246 + Sbjct: 264 L 264 >gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 211 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKH 208 >gi|294636980|ref|ZP_06715302.1| putative csgAB operon transcriptional regulatory protein [Edwardsiella tarda ATCC 23685] gi|291089808|gb|EFE22369.1| putative csgAB operon transcriptional regulatory protein [Edwardsiella tarda ATCC 23685] Length = 214 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 37/58 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E + + +G ++ +I+ +L IS NTV +I +I +K A K R+ A+ +A N Sbjct: 154 LTLRELEVMKAMQQGASNQDISQMLYISENTVRTHIYNIFKKIAVKNRTQAVKWADAN 211 >gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] Length = 261 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ L +++G ++ EIA L I+ TV N++ SI+RK + R I AVR Sbjct: 187 DAVLTVRELQVLDCVAQGMSNKEIAEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVR 246 Query: 243 NN 244 Sbjct: 247 QG 248 >gi|119714219|ref|YP_919361.1| metal-dependent phosphohydrolase [Nocardioides sp. JS614] gi|119526128|gb|ABL79498.1| metal-dependent phosphohydrolase, HD sub domain [Nocardioides sp. JS614] Length = 516 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L +++G ++ E+A L ISR T +++ + K T TR+ A YA+ +++ Sbjct: 454 LSDREVEVLRLVAKGLSNQEVAQTLVISRRTAEHHVQHVYAKIGTSTRAAAALYAMEHDL 513 Query: 246 V 246 + Sbjct: 514 L 514 >gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Query: 179 HWGKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 G EL G REVE L I+ G ++ EIA L IS TV Y++ I+ K + R Sbjct: 153 RGGAGAELAGLTPREVEVLGLIARGLSNAEIAAELVISHETVKTYVSRILAKLGLRDRVQ 212 Query: 236 AIAYAVRNNIV 246 A+ A R +V Sbjct: 213 AVVLAYRTGLV 223 >gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 254 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 191 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 250 Query: 246 V 246 + Sbjct: 251 L 251 >gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942] gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942] Length = 218 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE+E L ++ G ++EIA L +S +TV ++ I++K + R+ A+ +A+RN I Sbjct: 157 FTKRELEVLQQMAYGLRNEEIADKLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNGI 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|300859114|ref|YP_003784097.1| LuxR family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300686568|gb|ADK29490.1| LuxR-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] Length = 279 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ Sbjct: 210 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 269 Query: 238 AYAVR 242 A R Sbjct: 270 NAARR 274 >gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] Length = 193 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REV+ L I +G T+ EIA L IS NTV + +I K KT SG YA+ N Sbjct: 125 DLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNG 184 Query: 245 IV 246 I+ Sbjct: 185 II 186 >gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 269 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 206 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 265 Query: 246 V 246 + Sbjct: 266 L 266 >gi|312197189|ref|YP_004017250.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228525|gb|ADP81380.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 285 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE+E + +I+EG ++ E A L + TV +Y+ SIM+K R+ A+ A R Sbjct: 222 FGLTPRELEVVRFIAEGHSNAEAAKHLTVKPETVKSYLRSIMQKLGVHNRTAAVNVARRA 281 Query: 244 NIV 246 ++ Sbjct: 282 GLL 284 >gi|302538489|ref|ZP_07290831.1| two component system response regulator [Streptomyces sp. C] gi|302447384|gb|EFL19200.1| two component system response regulator [Streptomyces sp. C] Length = 226 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE + L + +G ++ EIA LGI TV ++ +I+ KT + +R A A R + Sbjct: 165 LTGRERDVLAALGDGLSNQEIAARLGIGTGTVKTHVGAILDKTGSASRVQAALLAHRTGL 224 >gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L+ IS+GK++ EIA +L ++ NTV ++ I+ K R+ A+ A++ Sbjct: 150 KLSERELEVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKLQANDRTQAVVIAIQRG 209 Query: 245 IV 246 ++ Sbjct: 210 LL 211 >gi|193064557|ref|ZP_03045637.1| transcriptional regulator CsgD [Escherichia coli E22] gi|192927809|gb|EDV82423.1| transcriptional regulator CsgD [Escherichia coli E22] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|157827467|ref|YP_001496531.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389] gi|157802771|gb|ABV79494.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 288 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +V GK +L+ RE EC+ ++S G + EI IL +S TV +++ SI +KT +S Sbjct: 211 EVKTGKYNKLSYRETECIYYLSLGNSMKEIGSILNLSPRTVEHHLNSIKQKTGLLYKSQL 270 Query: 237 IAYAVRN 243 + ++N Sbjct: 271 VKEFIKN 277 >gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 471 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L ++ G T+ +IA L IS NTV ++ +I K +R+ A YAVRN Sbjct: 8 QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRNG 67 Query: 245 IV 246 ++ Sbjct: 68 LL 69 >gi|56413870|ref|YP_150945.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168244733|ref|ZP_02669665.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264076|ref|ZP_02686049.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467083|ref|ZP_02700925.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444624|ref|YP_002040395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450147|ref|YP_002045140.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197362793|ref|YP_002142430.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128127|gb|AAV77633.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|154269337|gb|ABS72185.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden] gi|194403287|gb|ACF63509.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408451|gb|ACF68670.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195630363|gb|EDX48989.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094270|emb|CAR59776.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336437|gb|EDZ23201.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347328|gb|EDZ33959.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|119714221|ref|YP_919363.1| LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119526130|gb|ABL79500.1| transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 545 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 40/59 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + LT +++G ++ EIA L +SR TV ++++SI+ K A ++R+ A A+A R Sbjct: 486 LTRREHDVLTLLADGLSNPEIAQRLYLSRKTVAHHVSSILTKLALRSRAEAAAFATRTR 544 >gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 215 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 44/75 (58%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +M ++ K ++LT RE + L I+ GK++ EIA L IS TV ++++++ K Sbjct: 135 HMRTQHEPEKEKYYQLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTHVSNLLAKLDV 194 Query: 231 KTRSGAIAYAVRNNI 245 R+ A +AV++++ Sbjct: 195 ADRTQAALFAVKHHL 209 >gi|304394580|ref|ZP_07376499.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130] gi|303293241|gb|EFL87622.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130] Length = 221 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L +++G+++ EIA +LG+S TV+++ ++IMRK + + + A+R Sbjct: 154 ELTSREMQVLQSLAKGRSNREIAEVLGVSPKTVDSHRSNIMRKFGVHSIATLLVEAMRQG 213 Query: 245 IV 246 ++ Sbjct: 214 LI 215 >gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 210 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +T RE+ + + EG ++ EI+ L +S T+ N+I++I+ K + + R+ YA+R Sbjct: 147 DPAITPRELAIMKLVGEGLSNKEISEELSLSVGTIKNHISAILDKLSLRDRTQLAIYAIR 206 Query: 243 NNIV 246 +N+V Sbjct: 207 HNVV 210 >gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 250 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 187 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246 Query: 246 V 246 + Sbjct: 247 L 247 >gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] Length = 866 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR+R+ E G A+Y A M + V +LTGRE E L I EG +++EI L +S Sbjct: 781 LLRERISEGGWTASY-ARMKDNLTV------KLTGREREVLRKIGEGLSNEEIGGQLFLS 833 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 TV Y +I K K R AI+ A Sbjct: 834 TGTVKKYAYNIYEKLQVKNRVQAISRA 860 >gi|16764498|ref|NP_460113.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179660|ref|YP_216077.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614644|ref|YP_001588609.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553080|ref|ZP_02346830.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993996|ref|ZP_02575088.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234058|ref|ZP_02659116.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237217|ref|ZP_02662275.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168822574|ref|ZP_02834574.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469443|ref|ZP_03075427.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737293|ref|YP_002114139.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249466|ref|YP_002146903.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262382|ref|ZP_03162456.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243879|ref|YP_002215996.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389724|ref|ZP_03216335.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930806|ref|ZP_03221679.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207857350|ref|YP_002244001.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584353|ref|YP_002638151.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911038|ref|ZP_04654875.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|6014730|sp|O54294|CSGD_SALTY RecName: Full=Probable csgAB operon transcriptional regulatory protein gi|2739237|emb|CAA05315.1| CsgD protein [Salmonella typhimurium] gi|16419657|gb|AAL20072.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62127293|gb|AAX64996.1| putative transcriptional regulator (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364008|gb|ABX67776.1| hypothetical protein SPAB_02394 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455807|gb|EDX44646.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712795|gb|ACF92016.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213169|gb|ACH50566.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240637|gb|EDY23257.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289893|gb|EDY29254.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938395|gb|ACH75728.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602169|gb|EDZ00715.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320265|gb|EDZ05469.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322437|gb|EDZ10276.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328037|gb|EDZ14801.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331948|gb|EDZ18712.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341044|gb|EDZ27808.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709153|emb|CAR33486.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468880|gb|ACN46710.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246354|emb|CBG24163.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992909|gb|ACY87794.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157683|emb|CBW17175.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912129|dbj|BAJ36103.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086418|emb|CBY96191.1| Transcriptional regulatory protein uhpA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223757|gb|EFX48820.1| Transcriptional regulator CsgD for 2nd curli operon [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616512|gb|EFY13421.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619764|gb|EFY16639.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622541|gb|EFY19386.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629692|gb|EFY26467.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632588|gb|EFY29334.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636917|gb|EFY33620.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641545|gb|EFY38183.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644846|gb|EFY41380.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649699|gb|EFY46129.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653990|gb|EFY50313.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658522|gb|EFY54784.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663380|gb|EFY59582.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670114|gb|EFY66254.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674821|gb|EFY70912.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676708|gb|EFY72775.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682630|gb|EFY78649.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686312|gb|EFY82294.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714130|gb|EFZ05701.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129411|gb|ADX16841.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195731|gb|EFZ80907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199879|gb|EFZ84968.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203139|gb|EFZ88169.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209142|gb|EFZ94079.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209647|gb|EFZ94576.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217898|gb|EGA02613.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222185|gb|EGA06569.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224956|gb|EGA09214.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229700|gb|EGA13823.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232925|gb|EGA17021.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240660|gb|EGA24702.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242973|gb|EGA26994.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247665|gb|EGA31610.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252666|gb|EGA36504.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255707|gb|EGA39459.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261744|gb|EGA45316.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266904|gb|EGA50389.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269946|gb|EGA53395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623745|gb|EGE30090.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628199|gb|EGE34542.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988033|gb|AEF07016.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I EGK++ EIA L +S NT+ ++ IM K + R A A+R+ + Sbjct: 166 LSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 224 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 161 LTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNG 219 >gi|296111001|ref|YP_003621382.1| Response regulator (CheY-like receiver domain and HTH-typeDNA-binding domain) [Leuconostoc kimchii IMSNU 11154] gi|295832532|gb|ADG40413.1| Response regulator (CheY-like receiver domain and HTH-typeDNA-binding domain) [Leuconostoc kimchii IMSNU 11154] Length = 211 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAV 208 +G IL++++ EI + + YD ++ F L EVE L+ IS+G IA+ Sbjct: 121 QGNTILQNKITEI-------ISNDELYDTQNNQNIFNLNPTEVEILSAISQGSKIKNIAL 173 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S T+ N++ + K + AIA AVRN+I+ Sbjct: 174 KLHLSERTIKNHLTVVYDKMNVSSGVEAIALAVRNHII 211 >gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae] Length = 230 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H K+ L+ RE + L W+ GKT E+AVIL I+ TV + ++M+K + A+ Sbjct: 161 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFLMGNVMKKLGVNNATHAV 219 >gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B] gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B] Length = 220 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L W++ G ++ EIA L ++ +TV ++ SI+RK +R A YA+ + I Sbjct: 157 LTRRERQTLAWLARGVSNKEIARALNLAESTVKVHVQSILRKLNLSSRVQAAIYAIEHKI 216 >gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 214 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ RE E L ISEG T++EIA L SR TV + +++ KT K I +A++N Sbjct: 151 IELSEREKEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQN 210 Query: 244 NIV 246 ++ Sbjct: 211 GLI 213 >gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231] gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19] Length = 234 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 179 HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H +D LT RE+E L I+ GK++ EIA L IS TV ++ ++ KT ++ R A Sbjct: 157 HINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHA 216 Query: 237 IAYAVRNNIV 246 + +A + +V Sbjct: 217 VLFAFKRGVV 226 >gi|148557613|ref|YP_001265195.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1] gi|148502803|gb|ABQ71057.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1] Length = 222 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE ECL W+S GKT+ E A ILG+S+ TV ++ + + + + A A+R + Sbjct: 162 LRSRERECLVWLSLGKTAWETAAILGLSQRTVEYHLNNAVARLGAANKVHAAVIAIRAQL 221 Query: 246 V 246 + Sbjct: 222 I 222 >gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 247 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+ CL +G S+EIA +G+S +TVN Y+ + K + R AIA A+R Sbjct: 186 LSDREISCLQMAGDGHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIR 242 >gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 224 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++G+++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKN 218 >gi|326801202|ref|YP_004319021.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551966|gb|ADZ80351.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 216 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D ++ RE+E L ++G T+ EIA L S+ TV Y S++ KT + + I YA + Sbjct: 152 DLQINNREMEVLALTADGFTNQEIAERLFTSKRTVEGYRQSLIEKTGVRNTAALIKYAYQ 211 Query: 243 NNIV 246 N I+ Sbjct: 212 NGIL 215 >gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319] gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319] Length = 200 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK + EIA L I TV NYI++I+ K K R AI Sbjct: 139 LTAREKEVLALVADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIEAI 190 >gi|218700457|ref|YP_002408086.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI39] gi|218370443|emb|CAR18250.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli IAI39] Length = 216 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|196232039|ref|ZP_03130894.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223761|gb|EDY18276.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 220 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + LT RE E L ++EGK + EI V LG+S TV ++ I+ K K+R+ A Sbjct: 156 YGLTRRETEVLHLLAEGKANAEIGVELGLSPRTVEKHVEHILDKLGVKSRTAA 208 >gi|15801157|ref|NP_287174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 EDL933] gi|15830671|ref|NP_309444.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. Sakai] gi|26247175|ref|NP_753215.1| DNA-binding transcriptional regulator CsgD [Escherichia coli CFT073] gi|30062564|ref|NP_836735.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a str. 2457T] gi|56479799|ref|NP_706950.2| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a str. 301] gi|91210188|ref|YP_540174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UTI89] gi|110641216|ref|YP_668946.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 536] gi|110805049|ref|YP_688569.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 5 str. 8401] gi|117623229|ref|YP_852142.1| DNA-binding transcriptional regulator CsgD [Escherichia coli APEC O1] gi|157155649|ref|YP_001462271.1| DNA-binding transcriptional regulator CsgD [Escherichia coli E24377A] gi|168747192|ref|ZP_02772214.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4113] gi|168754516|ref|ZP_02779523.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4401] gi|168760623|ref|ZP_02785630.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4501] gi|168767694|ref|ZP_02792701.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4486] gi|168773880|ref|ZP_02798887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4196] gi|168783565|ref|ZP_02808572.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4076] gi|168799314|ref|ZP_02824321.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC508] gi|191166943|ref|ZP_03028767.1| transcriptional regulator CsgD [Escherichia coli B7A] gi|193069453|ref|ZP_03050407.1| transcriptional regulator CsgD [Escherichia coli E110019] gi|194432391|ref|ZP_03064678.1| transcriptional regulator CsgD [Shigella dysenteriae 1012] gi|195935427|ref|ZP_03080809.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4024] gi|208809483|ref|ZP_03251820.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4206] gi|208815293|ref|ZP_03256472.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4045] gi|208822315|ref|ZP_03262634.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4042] gi|209396459|ref|YP_002269887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4115] gi|209918293|ref|YP_002292377.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SE11] gi|215486249|ref|YP_002328680.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O127:H6 str. E2348/69] gi|217328252|ref|ZP_03444334.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14588] gi|218553618|ref|YP_002386531.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI1] gi|218557921|ref|YP_002390834.1| DNA-binding transcriptional regulator CsgD [Escherichia coli S88] gi|218688993|ref|YP_002397205.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ED1a] gi|218694575|ref|YP_002402242.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 55989] gi|218704448|ref|YP_002411967.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UMN026] gi|227886606|ref|ZP_04004411.1| LuxR family protein [Escherichia coli 83972] gi|237706978|ref|ZP_04537459.1| transcriptional regulator for 2nd curli operon [Escherichia sp. 3_2_53FAA] gi|254792423|ref|YP_003077260.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14359] gi|256018703|ref|ZP_05432568.1| DNA-binding transcriptional regulator CsgD [Shigella sp. D9] gi|260854523|ref|YP_003228414.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|260867403|ref|YP_003233805.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|261227055|ref|ZP_05941336.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. FRIK2000] gi|261256289|ref|ZP_05948822.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O157:H7 str. FRIK966] gi|291282059|ref|YP_003498877.1| CsgD [Escherichia coli O55:H7 str. CB9615] gi|293404327|ref|ZP_06648321.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1412] gi|293433333|ref|ZP_06661761.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088] gi|298380106|ref|ZP_06989711.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1302] gi|300816738|ref|ZP_07096958.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300821183|ref|ZP_07101332.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300899554|ref|ZP_07117793.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300902427|ref|ZP_07120409.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300922561|ref|ZP_07138662.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300935178|ref|ZP_07150204.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300974342|ref|ZP_07172554.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|300982659|ref|ZP_07176243.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|301023209|ref|ZP_07187008.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|301051178|ref|ZP_07198008.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|301305026|ref|ZP_07211128.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|301328594|ref|ZP_07221655.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|306814112|ref|ZP_07448285.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101] gi|307310181|ref|ZP_07589831.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309794973|ref|ZP_07689393.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331652090|ref|ZP_08353109.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M718] gi|331657094|ref|ZP_08358056.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA206] gi|331662440|ref|ZP_08363363.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA143] gi|331667434|ref|ZP_08368298.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA271] gi|331672560|ref|ZP_08373349.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA280] gi|331676827|ref|ZP_08377523.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H591] gi|331682538|ref|ZP_08383157.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H299] gi|332279774|ref|ZP_08392187.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9] gi|12514569|gb|AAG55786.1|AE005314_14 putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. EDL933] gi|26107576|gb|AAN79775.1|AE016759_49 Probable csgAB operon transcriptional Regulatory protein [Escherichia coli CFT073] gi|13360877|dbj|BAB34840.1| transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. Sakai] gi|30040810|gb|AAP16541.1| probable csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|56383350|gb|AAN42657.2| probable csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|91071762|gb|ABE06643.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli UTI89] gi|110342808|gb|ABG69045.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli 536] gi|110614597|gb|ABF03264.1| Probable csgAB operon transcriptional Regulatory protein [Shigella flexneri 5 str. 8401] gi|115512353|gb|ABJ00428.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli APEC O1] gi|157077679|gb|ABV17387.1| transcriptional regulator CsgD [Escherichia coli E24377A] gi|171986605|gb|ACB59284.1| CsgD [Escherichia coli] gi|171986613|gb|ACB59291.1| CsgD [Escherichia coli] gi|171986621|gb|ACB59298.1| CsgD [Escherichia coli] gi|171986629|gb|ACB59305.1| CsgD [Escherichia coli] gi|187770420|gb|EDU34264.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4196] gi|188018009|gb|EDU56131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4113] gi|188999071|gb|EDU68057.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4076] gi|189358200|gb|EDU76619.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4401] gi|189363208|gb|EDU81627.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4486] gi|189368715|gb|EDU87131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4501] gi|189378335|gb|EDU96751.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC508] gi|190903055|gb|EDV62780.1| transcriptional regulator CsgD [Escherichia coli B7A] gi|192957201|gb|EDV87650.1| transcriptional regulator CsgD [Escherichia coli E110019] gi|194419278|gb|EDX35360.1| transcriptional regulator CsgD [Shigella dysenteriae 1012] gi|208729284|gb|EDZ78885.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4206] gi|208731941|gb|EDZ80629.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4045] gi|208737800|gb|EDZ85483.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4042] gi|209157859|gb|ACI35292.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4115] gi|209773728|gb|ACI85176.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773730|gb|ACI85177.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773732|gb|ACI85178.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773734|gb|ACI85179.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773736|gb|ACI85180.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209911552|dbj|BAG76626.1| putative transcriptional regulator [Escherichia coli SE11] gi|215264321|emb|CAS08678.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli O127:H6 str. E2348/69] gi|217318679|gb|EEC27105.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14588] gi|218351307|emb|CAU97012.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli 55989] gi|218360386|emb|CAQ97938.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli IAI1] gi|218364690|emb|CAR02380.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli S88] gi|218426557|emb|CAR07385.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli ED1a] gi|218431545|emb|CAR12423.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli UMN026] gi|222032794|emb|CAP75533.1| csgAB operon transcriptional regulatory [Escherichia coli LF82] gi|226898188|gb|EEH84447.1| transcriptional regulator for 2nd curli operon [Escherichia sp. 3_2_53FAA] gi|227836810|gb|EEJ47276.1| LuxR family protein [Escherichia coli 83972] gi|254591823|gb|ACT71184.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. TW14359] gi|257753172|dbj|BAI24674.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|257763759|dbj|BAI35254.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|281178149|dbj|BAI54479.1| putative transcriptional regulator [Escherichia coli SE15] gi|281600449|gb|ADA73433.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2002017] gi|284920864|emb|CBG33927.1| probable csgab operon transcriptional regulator [Escherichia coli 042] gi|290761932|gb|ADD55893.1| CsgD [Escherichia coli O55:H7 str. CB9615] gi|291324152|gb|EFE63574.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088] gi|291428913|gb|EFF01938.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1412] gi|294494087|gb|ADE92843.1| transcriptional regulator CsgD [Escherichia coli IHE3034] gi|298279804|gb|EFI21312.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1302] gi|300297199|gb|EFJ53584.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|300307124|gb|EFJ61644.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|300356825|gb|EFJ72695.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300397133|gb|EFJ80671.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|300405459|gb|EFJ88997.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300410585|gb|EFJ94123.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|300421107|gb|EFK04418.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300459572|gb|EFK23065.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300526482|gb|EFK47551.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300530512|gb|EFK51574.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300839744|gb|EFK67504.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|300844986|gb|EFK72746.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|305852749|gb|EFM53197.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101] gi|306909899|gb|EFN40393.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|307553043|gb|ADN45818.1| csgAB operon transcriptional regulatory protein [Escherichia coli ABU 83972] gi|307627490|gb|ADN71794.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UM146] gi|308121277|gb|EFO58539.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|312945603|gb|ADR26430.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O83:H1 str. NRG 857C] gi|313650706|gb|EFS15107.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|315060319|gb|ADT74646.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli W] gi|315253837|gb|EFU33805.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|315287407|gb|EFU46818.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3] gi|315291086|gb|EFU50449.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1] gi|315296668|gb|EFU55963.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3] gi|320189720|gb|EFW64376.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. EC1212] gi|320200932|gb|EFW75516.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli EC4100B] gi|320637492|gb|EFX07292.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. G5101] gi|320643053|gb|EFX12254.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H- str. 493-89] gi|320648510|gb|EFX17165.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H- str. H 2687] gi|320653825|gb|EFX21899.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659305|gb|EFX26874.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7 str. USDA 5905] gi|320664439|gb|EFX31590.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. LSU-61] gi|323175733|gb|EFZ61327.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1180] gi|323190548|gb|EFZ75820.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli RN587/1] gi|323379120|gb|ADX51388.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323947348|gb|EGB43354.1| luxR family protein Bacterial regulatory protein [Escherichia coli H120] gi|323953272|gb|EGB49138.1| luxR family protein regulatory protein [Escherichia coli H252] gi|323958052|gb|EGB53762.1| luxR family protein regulatory protein [Escherichia coli H263] gi|323966982|gb|EGB62408.1| luxR family protein regulatory protein [Escherichia coli M863] gi|323976586|gb|EGB71674.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|324007878|gb|EGB77097.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2] gi|324013311|gb|EGB82530.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1] gi|324017459|gb|EGB86678.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|324117387|gb|EGC11294.1| luxR family protein regulatory protein [Escherichia coli E1167] gi|326339260|gb|EGD63074.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. 1125] gi|326344780|gb|EGD68528.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. 1044] gi|327253435|gb|EGE65073.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli STEC_7v] gi|331050368|gb|EGI22426.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M718] gi|331055342|gb|EGI27351.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA206] gi|331060862|gb|EGI32826.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA143] gi|331065019|gb|EGI36914.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA271] gi|331070203|gb|EGI41569.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA280] gi|331075516|gb|EGI46814.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H591] gi|331080169|gb|EGI51348.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H299] gi|332088801|gb|EGI93913.1| putative csgAB operon transcriptional regulatory protein [Shigella boydii 5216-82] gi|332092876|gb|EGI97944.1| putative csgAB operon transcriptional regulatory protein [Shigella dysenteriae 155-74] gi|332102126|gb|EGJ05472.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9] gi|332758809|gb|EGJ89125.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 4343-70] gi|332759950|gb|EGJ90251.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2747-71] gi|332762241|gb|EGJ92509.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-671] gi|332767834|gb|EGJ98025.1| bacterial regulatory s, luxR family protein [Shigella flexneri 2930-71] gi|333005819|gb|EGK25336.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri VA-6] gi|333019711|gb|EGK38984.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-304] Length = 216 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|302206808|gb|ADL11150.1| Hypothetical protein CpC231_1689 [Corynebacterium pseudotuberculosis C231] gi|308277060|gb|ADO26959.1| Hypothetical protein CpI19_1705 [Corynebacterium pseudotuberculosis I19] Length = 279 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ Sbjct: 210 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 269 Query: 238 AYAVR 242 A R Sbjct: 270 NAARR 274 >gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W] Length = 189 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E + EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 123 WQEQNPLSDREKEVMLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182 Query: 240 A 240 A Sbjct: 183 A 183 >gi|146276004|ref|YP_001166164.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322695|gb|ABP64638.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 248 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT REV+CL W + GKT EI +IL +S +TV ++ + K R+ +I A Sbjct: 182 KLTRREVQCLRWAAAGKTDGEIGIILDLSHSTVRFHLRNAAEKLGATGRAQSIQLAA 238 >gi|194428408|ref|ZP_03060948.1| transcriptional regulator CsgD [Escherichia coli B171] gi|260843280|ref|YP_003221058.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|194413460|gb|EDX29742.1| transcriptional regulator CsgD [Escherichia coli B171] gi|257758427|dbj|BAI29924.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|323163719|gb|EFZ49538.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli E128010] Length = 216 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] Length = 227 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +S G ++ EI+ L IS TV +++++I+ K K R+ A+ A+R Sbjct: 167 DLTDREMEVLKVLSSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAG 226 Query: 245 I 245 I Sbjct: 227 I 227 >gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14] gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14] Length = 267 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 204 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 263 Query: 246 V 246 + Sbjct: 264 L 264 >gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 209 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L RE E L I++G T+ +I LG+S TV NY++SI+ K +R+ A Y ++ + Sbjct: 156 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQS 214 >gi|325922351|ref|ZP_08184126.1| Transcriptional regulator, LuxR family protein [Xanthomonas gardneri ATCC 19865] gi|325547170|gb|EGD18249.1| Transcriptional regulator, LuxR family protein [Xanthomonas gardneri ATCC 19865] Length = 506 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELTGRE + L ++EG EIA L ++ NTV N++A++ K +R AI +A Sbjct: 434 ELTGRERDVLGLLAEGLADKEIAQQLSVAPNTVRNHVAALYSKIDVHSRGEAIVWA 489 >gi|289704562|ref|ZP_06500996.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558750|gb|EFD52007.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 202 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ L EG + IA L ++ TV NY++S M+KT T TR A +A R Sbjct: 139 DCPLTDRELDALRATGEGYSVARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARR 198 Query: 243 NN 244 + Sbjct: 199 HE 200 >gi|290961885|ref|YP_003493067.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651411|emb|CBG74533.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I++G + EIA L +S NTV +I + KT ++ R+ A YA R+ + Sbjct: 163 LTRREAEILTLIAQGLNNAEIADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL 222 Query: 246 V 246 Sbjct: 223 A 223 >gi|205353119|ref|YP_002226920.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272900|emb|CAR37830.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 216 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] Length = 496 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++ + C L D++ R M L +++D W L AN+ ++ G + Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAE 422 Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480 >gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L +++G + EIA L IS T +++SIM K R+ A+A A + Sbjct: 170 ELTERELEVLRLLAQGMPNKEIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 217 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE++ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 150 ELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209 Query: 245 IV 246 + Sbjct: 210 LA 211 >gi|145224867|ref|YP_001135545.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] gi|145217353|gb|ABP46757.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] Length = 519 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVI 209 LRDR+ E G L + S H + LT RE+E L ++ G ++ EIA Sbjct: 421 LRDRVRE-GHLDELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEIAAT 479 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS T N++ K R GA +A+ + ++ Sbjct: 480 LGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516 >gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905] gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus C3-41] gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905] gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Lysinibacillus sphaericus C3-41] Length = 224 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++G+++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKN 218 >gi|91205195|ref|YP_537550.1| putative transcriptional regulator [Rickettsia bellii RML369-C] gi|91068739|gb|ABE04461.1| Putative transcriptional regulator [Rickettsia bellii RML369-C] Length = 285 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +V GK +L+ RE EC+ ++S G + EI IL +S TV +++ SI +KT +S Sbjct: 208 EVKTGKYNKLSYRETECIYYLSLGNSMKEIGSILNLSPRTVEHHLNSIKQKTGLLYKSQL 267 Query: 237 IAYAVRN 243 + ++N Sbjct: 268 VKEFIKN 274 >gi|333009595|gb|EGK29047.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-272] Length = 216 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 238 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +EG ++EIA +L ++ +TV ++ I+ K + RS A+A A R+ + Sbjct: 165 LTVREREVLRLAAEGHPNEEIAALLHLAESTVKTHVKRILGKLGARDRSQAVAAAYRHGL 224 Query: 246 V 246 + Sbjct: 225 M 225 >gi|302331370|gb|ADL21564.1| LuxR family transcriptional regulator [Corynebacterium pseudotuberculosis 1002] Length = 279 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ Sbjct: 210 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 269 Query: 238 AYAVR 242 A R Sbjct: 270 NAARR 274 >gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] Length = 227 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L +S G T+ EIA L +S TV +++SI+ K K R+ A+ A++ Sbjct: 167 ELSEREIEVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAG 226 Query: 245 I 245 I Sbjct: 227 I 227 >gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 208 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A+ +M K D +LT RE E + W+ EG ++ EI+ L +S TV NY+ + Sbjct: 128 IASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSNREISAALYLSEGTVRNYVTQL 187 Query: 225 MRKTATKTRS 234 + K + R+ Sbjct: 188 LEKLNVRDRT 197 >gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ REVE L ++ ++ EIA L IS +TV N++ +I+ K +R A AYAV Sbjct: 152 DGGLSPREVEVLELVALRLSNKEIAARLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVA 211 Query: 243 NNIV 246 + ++ Sbjct: 212 HGLI 215 >gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 211 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 210 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G ++ +IA+ LG + +T+ ++ +I++K T R+ A+ A+R I Sbjct: 147 LTARELEVLELMAQGLSNPDIAIRLGRAESTMKVHVRNILQKLGTDDRTAAVTTALRRGI 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR [Mycobacterium abscessus ATCC 19977] gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR [Mycobacterium abscessus] Length = 218 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I+ G T+ EIA L IS TV ++I I K + R+ AI YA + Sbjct: 154 KLTARELDVLALIASGATNSEIAEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHG 213 Query: 245 IV 246 IV Sbjct: 214 IV 215 >gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 227 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ ++ L +S TV Y++S++RKT+T R+ + +A+++ + Sbjct: 166 LTHREQEVLELLTHGLSNADMGHQLHLSPRTVEKYVSSLLRKTSTSNRAELVRFAMKHGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|315445195|ref|YP_004078074.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] gi|315263498|gb|ADU00240.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] Length = 519 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVI 209 LRDR+ E G L + S H + LT RE+E L ++ G ++ EIA Sbjct: 421 LRDRVRE-GHLDELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEIAAT 479 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS T N++ K R GA +A+ + ++ Sbjct: 480 LGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516 >gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13] Length = 239 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 176 LTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 233 >gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 210 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++G+T+ EIA G++RNTV Y+ S + K + R AI A Sbjct: 150 LTRREYEVLRLAAQGQTNPEIAESTGLARNTVKTYLQSALHKLGARNRVEAIGKA 204 >gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 201 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G+ +L D + I L AA V +LT RE E LT I+ GK++ EIA L Sbjct: 116 GQSVLDDGVTAILLAAA----------VEVPASADLTPREAEVLTLIARGKSNTEIAGEL 165 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S TV +I ++ K + R+ A+ YA+R + Sbjct: 166 FVSAATVKTHINNLFAKIGVRDRAQAVRYALRRGL 200 >gi|238854471|ref|ZP_04644810.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|260665481|ref|ZP_05866328.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|282934541|ref|ZP_06339793.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] gi|313471834|ref|ZP_07812326.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|238832898|gb|EEQ25196.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|239530121|gb|EEQ69122.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|260560749|gb|EEX26726.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|281301379|gb|EFA93671.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] Length = 201 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE+E L + + T+ E+A L +S TV NYI+SI+ KT T +R A+ A Sbjct: 138 DNPLTKRELEILKMLEQVATTKELAQRLFLSEGTVRNYISSILSKTGTASRLEALNLA 195 >gi|284045808|ref|YP_003396148.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950029|gb|ADB52773.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 302 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 ELT RE++ L ++ G+T+ EIA L IS TV +++ +++RK R+ A+A Sbjct: 242 ELTARELQVLELLATGRTNAEIATALMISEGTVKHHVKNLLRKLNASNRADAVA 295 >gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] Length = 230 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH K+ L+ RE + L W+S GKT E+++IL I+ TV ++++ M+K A+ Sbjct: 160 VHQKKNVFLSPRERQILKWVSAGKTYAEVSLILSITERTVKFHMSNAMKKLGVNNARHAV 219 >gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] Length = 210 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 KG IIL E + A + K VH D +LT RE E L IS+G ++ EIA Sbjct: 120 KGEIIL-----EPEVTGKMMARLTKK-QVHQLHD-DLTNREQEILMLISQGNSNQEIADA 172 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++++I+ K + R+ A YA +++++ Sbjct: 173 LFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHHLI 209 >gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] Length = 242 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E E L+W + GKT+ E A ILG+S V ++ RK ATK ++ +A A+ N Sbjct: 184 EAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNG 238 >gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 218 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + LT I +G ++ EIA L IS TV ++I I K + R+ AI YA N Sbjct: 154 ELTTRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNG 213 Query: 245 IV 246 IV Sbjct: 214 IV 215 >gi|323156843|gb|EFZ42977.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli EPECa14] Length = 203 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 111 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 170 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 171 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 200 >gi|238791898|ref|ZP_04635535.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238729002|gb|EEQ20519.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 245 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 RE E L W S GKT E+++ILGI R+TV +I +++RK AI + Sbjct: 185 RENEILYWASVGKTYSEVSIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIE 238 >gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 537 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK++ LT RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 471 GKEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 530 >gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 251 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 188 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 247 Query: 246 V 246 + Sbjct: 248 L 248 >gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311] gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CC9311] Length = 83 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 3 ISLSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 60 >gi|104782747|ref|YP_609245.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95111734|emb|CAK16458.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 216 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 181 GKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G D+ LT R++E L I GK++ EIA LG+S TV + + IM++ +G + Sbjct: 145 GNDYRQHLTARQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMKRLQIYDVAGLVL 204 Query: 239 YAVRNNIV 246 +AVR I+ Sbjct: 205 FAVRERII 212 >gi|21311407|gb|AAM46700.1|AF448800_2 AhlR [Erwinia chrysanthemi] Length = 124 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 8/98 (8%) Query: 156 RDRLWEIGLLAAYQA----NMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAV 208 RD+L ++ L++A++ + S + H K E + RE E L W S GKT EIA+ Sbjct: 18 RDKL-QMLLISAHEKLTSLHREMSRNRHNSKSQEADIFSQRENEILYWASMGKTYHEIAL 76 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ILGI+ +TV +I ++++K AI V N++ Sbjct: 77 ILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 114 >gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE LT I EG + EIA LG+S TV N + I K A + R+ YA+R Sbjct: 147 DPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSHIFDKLALRDRTQLAIYAIR 206 Query: 243 NNIV 246 + +V Sbjct: 207 HRLV 210 >gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] Length = 537 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181 G D Y + D + + L++ G +I D R+WE + +F+S G Sbjct: 419 GADG-YVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWE----ENKETGLFESRSD--G 471 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ LT RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 472 IEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 530 >gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 178 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG + IA LGIS +TV ++A I+ K TR+ A+ +R + Sbjct: 116 LTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLGIRKGL 175 Query: 246 V 246 + Sbjct: 176 I 176 >gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 204 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE + L ++EGKT+ EIA L +S TV NYI+ I+ K R AIA Sbjct: 140 LTERESQVLELVAEGKTTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIA 192 >gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] Length = 239 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+ILGI TV +I ++++K AI V Sbjct: 174 FSARENEILYWASMGKTYQEIALILGIKSGTVKFHIGNVVKKLGVLNAKHAIRLGVE 230 >gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 220 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L + G T DEIA L +S +T++ ++ +I +K R+GA+A A+R+ Sbjct: 159 DLSLREQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDG 218 Query: 245 IV 246 +V Sbjct: 219 LV 220 >gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 781 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + EG T ++A L +S TVN ++ SI+RK ++R+ A+ A Sbjct: 720 LTPRELEVLRLVGEGMTDAQVAGRLFVSTRTVNAHLRSILRKLGVRSRAAAVRLA 774 >gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2] gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] Length = 496 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++ + C L D++ R M L +++D W L AN+ ++ G + Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAE 422 Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480 >gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] Length = 224 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++G+++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKN 218 >gi|288923802|ref|ZP_06417891.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344850|gb|EFC79290.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 289 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D G+ LT RE E + ++EG EIA +LGIS TV+ ++ I RK ++R+ Sbjct: 196 DRAAGRLAALTPREREVVDQLAEGIGDREIARVLGISPRTVHKHLEQIYRKLGLQSRTAV 255 Query: 237 IAYAVRNNI 245 +A VR I Sbjct: 256 VAV-VRGTI 263 >gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] Length = 253 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G++ LT RE E L I++G ++++IA +S N+V +YI + RK +RS A+ + Sbjct: 173 GREEGLTPREAEVLALITQGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRSQAVLWG 232 Query: 241 VRNN 244 VR+ Sbjct: 233 VRHG 236 >gi|293603128|ref|ZP_06685562.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter piechaudii ATCC 43553] gi|292818522|gb|EFF77569.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter piechaudii ATCC 43553] Length = 120 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ R+ CL W + GKTS E + ILG+S +TVN ++ + K + R A+ A+R + Sbjct: 55 LSDRQAACLYWSAAGKTSWETSRILGVSESTVNFHLRNACAKLGVRGRRAAVVSALRLGL 114 Query: 246 V 246 + Sbjct: 115 L 115 >gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 229 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L ++ G ++ EI L +S TV Y++S++RKT++ R+ + +A++++I Sbjct: 168 ISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRAELVRFAIKHDI 227 Query: 246 V 246 V Sbjct: 228 V 228 >gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241] gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241] Length = 211 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|194476794|ref|YP_002048973.1| possible transcriptional regulator [Paulinella chromatophora] gi|171191801|gb|ACB42763.1| possible transcriptional regulator [Paulinella chromatophora] Length = 90 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+GREVE + ++ G T+ EIA L IS+ TV+N+I +I KT R + +A+ Sbjct: 13 NLSGREVELIELLATGLTNQEIATHLMISKRTVDNHICNIFTKTGVNNRIKLLNWAI 69 >gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 241 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 178 LTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 236 >gi|241766529|ref|ZP_04764392.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241363243|gb|EER58807.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 239 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE L W+SEG+++ EIA ++G S TV + + RK + ++ + YAV Sbjct: 149 LTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIEGQAALMKYAV 204 >gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 209 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207 >gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L I+EG ++ EIA LGIS TV+ + A+++ K + R YA+R + Sbjct: 157 VTSREEEVLKLIAEGYSTREIAGTLGISAKTVDRHRANLLAKLGLRDRLALTRYAIRVGL 216 Query: 246 V 246 + Sbjct: 217 I 217 >gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+D+ +LT RE E L +++G ++ EIA L +SR TV ++I I RK + R+ A++ Sbjct: 162 GQDYDQLTNRETEILNLVAQGLSNREIAEQLFVSRYTVESHIKHIYRKLSVSKRTKAVST 221 Query: 240 A 240 A Sbjct: 222 A 222 >gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 244 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W ++GK+ EI +GIS + ++ ++ RK T +R+ A+A +R I Sbjct: 183 LSPRERESLQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGI 242 Query: 246 V 246 + Sbjct: 243 I 243 >gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] Length = 496 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++ + C L D++ R M L +++D W L AN+ ++ G + Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAE 422 Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480 >gi|330898318|gb|EGH29737.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 220 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT R++E L I GK++ EIA LG+S T+ + A +M++ +G + + VR Sbjct: 154 FRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|329296611|ref|ZP_08253947.1| LuxR family transcriptional regulator [Plautia stali symbiont] Length = 89 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + + RE+E L W +EGKTS EI +IL IS +TVN + ++ ++ ++ YA Sbjct: 28 DFSQRELEILKWTAEGKTSAEICLILAISEHTVNFHQKNMQKRFNVSNKTQIACYA 83 >gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 213 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE E L I+ G ++ IA LGIS +TV N+I+S++ K + R+ A Sbjct: 151 LTPREHEVLALIARGDSNKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEA 201 >gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 237 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194 IGL+ + G I L E G ++ ANM + +H F ELT RE E L Sbjct: 125 IGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLARFVPEYAVELTARERETL 184 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241 W + GKT EI I+ + TV ++ + MRK AT A+ A+ Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAM 232 >gi|16129003|ref|NP_415558.1| DNA-binding transcriptional activator for csgBA [Escherichia coli str. K-12 substr. MG1655] gi|89107885|ref|AP_001665.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli str. K-12 substr. W3110] gi|170080692|ref|YP_001730012.1| DNA-binding transcriptional regulator of adhesion determinants [Escherichia coli str. K-12 substr. DH10B] gi|238900295|ref|YP_002926091.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BW2952] gi|256023262|ref|ZP_05437127.1| DNA-binding transcriptional regulator CsgD [Escherichia sp. 4_1_40B] gi|300950131|ref|ZP_07164076.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300954426|ref|ZP_07166878.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301644945|ref|ZP_07244913.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|307137675|ref|ZP_07497031.1| DNA-binding transcriptional regulator CsgD [Escherichia coli H736] gi|331641579|ref|ZP_08342714.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H736] gi|1706166|sp|P52106|CSGD_ECOLI RecName: Full=CsgBAC operon transcriptional regulatory protein gi|1147562|emb|CAA62280.1| putative regulatory protein [Escherichia coli K-12] gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator for csgBA [Escherichia coli str. K-12 substr. MG1655] gi|4062613|dbj|BAA35830.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli str. K12 substr. W3110] gi|169888527|gb|ACB02234.1| DNA-binding transcriptional regulator of adhesion determinants [Escherichia coli str. K-12 substr. DH10B] gi|238860897|gb|ACR62895.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BW2952] gi|260449819|gb|ACX40241.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|300318576|gb|EFJ68360.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450478|gb|EFK14098.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301076735|gb|EFK91541.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|323942508|gb|EGB38675.1| luxR family protein regulatory protein [Escherichia coli E482] gi|331038377|gb|EGI10597.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H736] Length = 216 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|302530222|ref|ZP_07282564.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302439117|gb|EFL10933.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 200 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE++ L EG + +IA L ++ TV NY+++ M+KT T+TR A YA Sbjct: 137 DCPLTVREIDVLRATREGYSVADIATRLHLAAGTVRNYLSNAMQKTQTRTRHEAARYA 194 >gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 225 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 181 GKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 GKD LT RE E L ++ GK + EI+ IL IS T +I IM+K R+ A+ Sbjct: 156 GKDRLLGALTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHIMQKLGALDRTQAV 215 Query: 238 AYAVRNNIV 246 A+R +V Sbjct: 216 VTAIRMKLV 224 >gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 200 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W ++ LT RE L EG+TS EIA LG+S TV NY++ + K + R Sbjct: 134 WSEEDPLTDRERRVLRLAGEGRTSAEIAAELGLSEGTVRNYLSEAISKLGAQNR 187 >gi|172036050|ref|YP_001802551.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171697504|gb|ACB50485.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 224 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L ++ G ++ EI L +S T+ Y++S++RKT T R+ + +A+ + Sbjct: 161 LDLTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDH 220 Query: 244 NIV 246 ++V Sbjct: 221 HLV 223 >gi|38234459|ref|NP_940226.1| putative transcriptional regulator [Corynebacterium diphtheriae NCTC 13129] gi|38200722|emb|CAE50418.1| Putative transcriptional regulator [Corynebacterium diphtheriae] Length = 281 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ Sbjct: 212 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 271 Query: 238 AYAVR 242 A R Sbjct: 272 NAARR 276 >gi|23098290|ref|NP_691756.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22776515|dbj|BAC12791.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 207 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L I++G +D+IA+ L IS TV N++ +I+RK R+ A+ A R Sbjct: 147 LTDREWDILIEIAKGNNNDQIALNLEISDKTVKNHVTTILRKLDVNDRTNAMLLAFR 203 >gi|302035963|ref|YP_003796285.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604027|emb|CBK40359.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 218 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ +E L I++GKT+ EIA LG+S TV NY+A++ K RS A A+ ++ Sbjct: 159 LSPQERRLLPLIAQGKTNKEIAAELGLSDKTVKNYLANVYSKLHLSRRSQAAAFYLK 215 >gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074] gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074] gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074] Length = 222 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 164 LLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 LL A S D H G+ LT RE E L I++G+++ EIA L +S TV + Sbjct: 136 LLQPEVAGALLSQDEHGQGQGRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTH 195 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 +++I+ K R+ A +AVR+ + Sbjct: 196 VSNILMKLDLADRTQAALWAVRHGM 220 >gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A] Length = 241 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL W ++GK++ EI ILGI T ++ + +K +T++ A+ Sbjct: 179 LTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|297204313|ref|ZP_06921710.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297148636|gb|EFH29052.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 203 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT RE+ L+ +EG + EIA L +S TV NY+A+I RKT + R AI Sbjct: 140 EMPLTRRELSVLSLAAEGASIAEIAGDLCLSHGTVRNYMAAITRKTGARNRIDAI 194 >gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 90 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 40/57 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+GRE++ + +S G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 12 LSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQ 68 >gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 229 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W++EGK++ +I+ I+ ++ + V ++I SIM+K TR A+ A R + Sbjct: 169 LSTRELEILKWVAEGKSTWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGL 228 Query: 246 V 246 + Sbjct: 229 L 229 >gi|298487656|ref|ZP_07005697.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157748|gb|EFH98827.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 220 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIAV LG+S T+ + + +M++ +G + + VR Sbjct: 154 YHLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE E L+ ++ G+ + EI LGI+R TV +Y+ S+ K +R+ A+ A+ Sbjct: 156 EVQLTEREQEVLSALAAGERNKEIGARLGITRRTVESYLNSLYAKLNVDSRAAAVMVAIE 215 Query: 243 NNIV 246 ++ Sbjct: 216 RGLL 219 >gi|289625340|ref|ZP_06458294.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647488|ref|ZP_06478831.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867747|gb|EGH02456.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 220 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIAV LG+S T+ + + +M++ +G + + VR Sbjct: 154 YHLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 209 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 240 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W+S GKT EI IL ++ +V +A I K R ++ A+R Sbjct: 174 DHRLTDREKEILQWVSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIR 233 Query: 243 NNIV 246 ++ Sbjct: 234 LGLI 237 >gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] Length = 94 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I++KT T R + +A+ Sbjct: 8 KSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRVALVRWAL 67 Query: 242 R 242 + Sbjct: 68 Q 68 >gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG ++ EIA L +S TV +I ++ KT K R+ A+ YA + Sbjct: 162 LTAREAEVLVLIAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 200 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + + G++ LT RE E L+ I++GK + EIA L I+ TV NYI+ I+ K R A Sbjct: 130 EAYSGEENPLTEREKEVLSLIADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIEA 189 Query: 237 I 237 I Sbjct: 190 I 190 >gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 274 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE E L W+S+G ++ IA I+ +S TV N+++ I++K R+ A +A Sbjct: 197 YHLTPREKEVLYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDRTQAAVFA 253 >gi|258653054|ref|YP_003202210.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556279|gb|ACV79221.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 905 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTG E + ++ GK + +IA +LGISR TV +++++ RK +R A+R+ I Sbjct: 844 LTGTERRVVGLVASGKANSDIAALLGISRRTVESHVSAAYRKLGVNSRVAMARIALRHGI 903 >gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 238 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +GR ++ L G+LA V G +LT RE E L ++EG+++ IA Sbjct: 118 QGRTVVASELT--GVLARAVRGESTPVPVVSGGAADLTPREQEILCHLAEGQSNKTIARE 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LGIS TV ++ +I+RK +R A AV + Sbjct: 176 LGISEGTVKLHVKAILRKLDVHSRVEAAVIAVERGL 211 >gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 219 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I+EG ++ EIA L +S TV +++++I+ K R+ A YA R Sbjct: 153 ELSDREMEVLKLIAEGLSNAEIAARLYVSEKTVKSHVSNILGKLHLADRTQAAVYAWREG 212 Query: 245 IV 246 +V Sbjct: 213 VV 214 >gi|330976162|gb|EGH76228.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330982505|gb|EGH80608.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 220 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT R++E L I GK++ EIA LG+S T+ + A +M++ +G + + VR Sbjct: 154 FRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|258653900|ref|YP_003203056.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557125|gb|ACV80067.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 205 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE++ L ++EG+T+ IA L +S TV +++A I RK T RS +A A Sbjct: 139 GRLGRLTARELDVLRLVAEGRTNKWIAEQLSLSALTVKSHLARISRKLGTGDRSHQVAVA 198 Query: 241 VRNNIV 246 +R ++ Sbjct: 199 MRAGMM 204 >gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 209 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L+ ++EG T+ E+ L IS TV ++ I K +TRS A++ A+R + Sbjct: 148 LTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVETRSAAVSVALRRD 206 >gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] Length = 212 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LTGREVE L ++ G + EIA LG S T+ N+++SI+ K + R A+ Sbjct: 152 LTGREVEVLALMAGGFNNREIADALGPSEGTIKNHVSSILSKLGVRDRVRAV 203 >gi|301029752|ref|ZP_07192806.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|299877440|gb|EFI85651.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|332342581|gb|AEE55915.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 190 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 98 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 157 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187 >gi|312200777|ref|YP_004020838.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311232113|gb|ADP84968.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 225 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 33/48 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LTGRE + L ++ G+T++EIA L I+ +TV ++AS+M K A + R Sbjct: 162 LTGREEQVLAAVARGRTNNEIAAELYITLSTVKTHVASLMAKLAARNR 209 >gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 225 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L W+ GK++ EI+ +L IS TV ++ +I RK R+ A++ A+ Sbjct: 162 QLTTRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLDVHNRTHAVSKAIE 219 >gi|256390814|ref|YP_003112378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357040|gb|ACU70537.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +TGRE E LT++ G ++ EI V +GIS TV Y+ ++ K + R+ + A N + Sbjct: 162 ITGREREALTFVGRGLSNAEIQVAMGISAATVKTYVTRLLAKLDARDRAQLVIAAYENGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GRE E LT I ++ EIA L +S TV N++ +++RK + R A+ A + Sbjct: 153 ELSGREREVLTLIGRALSNAEIAARLCLSEATVKNHVTAVLRKLGLRDRVQAVVTAYDHG 212 Query: 245 IV 246 +V Sbjct: 213 LV 214 >gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ G ++ EIA L IS+ TV +++ I+ K + R A+ YA R + Sbjct: 158 LTPRELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 336 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT +E E L W+ +GK + +I ILG S TV ++ + K +TR+ A A A+ Sbjct: 267 FRLTAKEAEVLYWVIKGKINRDIGDILGSSPMTVKKHLERVYAKLGVETRTAAAALAM 324 >gi|323165527|gb|EFZ51314.1| putative csgAB operon transcriptional regulatory protein [Shigella sonnei 53G] Length = 142 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 50 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 109 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 110 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 139 >gi|312138597|ref|YP_004005933.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311887936|emb|CBH47248.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 217 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + F L+GRE + L +++G ++ EIA L ISR TV ++ +I KT T++R Sbjct: 153 ESFRLSGREHQILALVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSR 204 >gi|290957842|ref|YP_003489024.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647368|emb|CBG70473.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 237 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + F L+ REVE + I+ G + +IA IS TV N+I I K + TRS AIA+ Sbjct: 169 RSFGLSSREVEVMDLIASGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIAH 226 >gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550] gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 213 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 213 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|54294847|ref|YP_127262.1| hypothetical protein lpl1926 [Legionella pneumophila str. Lens] gi|148359520|ref|YP_001250727.1| hypothetical protein LPC_1430 [Legionella pneumophila str. Corby] gi|296107564|ref|YP_003619265.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Legionella pneumophila 2300/99 Alcoy] gi|53754679|emb|CAH16166.1| hypothetical protein lpl1926 [Legionella pneumophila str. Lens] gi|148281293|gb|ABQ55381.1| hypothetical protein LPC_1430 [Legionella pneumophila str. Corby] gi|295649466|gb|ADG25313.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Legionella pneumophila 2300/99 Alcoy] Length = 270 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L R++EC + GKT++EIA+IL +S+ TV +YI + RK Sbjct: 204 LPKRQIECAQLLVRGKTAEEIAIILNLSKRTVEHYINILKRK 245 >gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 214 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I EG T+ EI+ L I TV ++++I+ K + R+ A YA +N Sbjct: 147 ELTERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVSDRTQAAVYAHQNG 206 Query: 245 IV 246 ++ Sbjct: 207 LI 208 >gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++ RE E L ++ G ++ EI L +S TV Y++S++RKT++ R+ + +A+++ Sbjct: 168 MSISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRAELVRFAIKH 227 Query: 244 NIV 246 IV Sbjct: 228 GIV 230 >gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 199 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + LT RE + L I+EG+T+ +IA L I+ TV NY++ I+ K R A Sbjct: 129 DMVYHNETPLTEREEQVLKLIAEGRTTQQIADELKITNGTVRNYVSVILDKLEVGNRIEA 188 Query: 237 IAY 239 I+Y Sbjct: 189 ISY 191 >gi|170682157|ref|YP_001744145.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SMS-3-5] gi|191172365|ref|ZP_03033906.1| transcriptional regulator CsgD [Escherichia coli F11] gi|312968892|ref|ZP_07783099.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 2362-75] gi|170519875|gb|ACB18053.1| transcriptional regulator CsgD [Escherichia coli SMS-3-5] gi|190907249|gb|EDV66847.1| transcriptional regulator CsgD [Escherichia coli F11] gi|312286294|gb|EFR14207.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 2362-75] gi|320178529|gb|EFW53494.1| Transcriptional regulator CsgD for 2nd curli operon [Shigella boydii ATCC 9905] gi|323174844|gb|EFZ60459.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli LT-68] gi|323185839|gb|EFZ71200.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1357] gi|333005785|gb|EGK25303.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-218] Length = 190 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 98 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 157 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187 >gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 496 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++ + C L D++ R M L +++D W L AN+ ++ G + Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDTSWFSRTLIEKLANVRRANAPGTGAE 422 Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480 >gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 257 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L + GK++ EIA +L IS TV N+I I++K R+ A+A A+ Sbjct: 196 ITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDVNNRAHAVAKAM 251 >gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 243 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L W S GKT EIA +L I+ +TV ++ I++K AI+ A+ Sbjct: 174 DDTLSARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLGVNNAKHAISLAIE 233 Query: 243 NNIV 246 NI+ Sbjct: 234 LNII 237 >gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] Length = 873 Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGR 189 C F A IG +L R++ R W +G +A D L+ R Sbjct: 760 CRRPFAEAGAPIGALL-----RVLARRGPWPPVGFVAELLDERPAGTAAEAPGDSALSQR 814 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E L ++ G + EIA LG+S NTV +++SI RK ++R+ A+A A Sbjct: 815 ERAILRYLPSGLSKREIAGELGVSANTVKTHVSSIYRKLDVRSRAQAVARA 865 >gi|167758853|ref|ZP_02430980.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704] gi|167663593|gb|EDS07723.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704] Length = 207 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 E++G+E+E ++ ++EG ++ EIA L +S TV NYI+SI+ K + R+ Y Sbjct: 147 EISGKELEVISLVAEGLSNKEIAKRLFLSEGTVRNYISSILDKLELRDRTQLAVY 201 >gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] Length = 224 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++G+++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 161 LTKRESEVLQLLTDGQSNRVIGETLFISEKTVKNHVSSILQKMQVNDRTQAVVTAIKNG 219 >gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L ++ G+ S EIA LGIS TV +++ SI K +R+ A+A ++ Sbjct: 162 ELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKRG 221 Query: 245 IV 246 ++ Sbjct: 222 LL 223 >gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 74 Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ VR Sbjct: 12 LTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRSQAVIELVR 68 >gi|317125782|ref|YP_004099894.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589870|gb|ADU49167.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 978 Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L ++EG ++ EI L +S NT N++ SI+ KTA R+ A +A + + Sbjct: 914 LTEREVDVLRLVAEGLSNREIGERLFLSANTAANHVRSILGKTAAPNRTKAAIFATEHGL 973 Query: 246 V 246 + Sbjct: 974 L 974 >gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1019 Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G TS +IA L IS TVN ++ SI K +RS A YA+ + + Sbjct: 958 LTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRYALEHKL 1017 Query: 246 V 246 + Sbjct: 1018 L 1018 >gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L ++ G+ S EIA LGIS TV +++ SI K +R+ A+A ++ Sbjct: 162 ELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKRG 221 Query: 245 IV 246 ++ Sbjct: 222 LL 223 >gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 247 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++T RE++ L ++ G TS+E+ LG+S +TV+ Y+ I K K R +A A R Sbjct: 184 MQMTKREMQTLEYLGCGMTSNEMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRL 243 Query: 244 NIV 246 ++ Sbjct: 244 GLI 246 >gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42] gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42] gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus amyloliquefaciens LL3] Length = 74 Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 182 KDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 KDF+ LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ Sbjct: 4 KDFQSKPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 63 Query: 238 AYAVR 242 +R Sbjct: 64 VELLR 68 >gi|260174355|ref|ZP_05760767.1| LuxR family transcriptional regulator [Bacteroides sp. D2] gi|315922623|ref|ZP_07918863.1| luxR family transcriptional regulator [Bacteroides sp. D2] gi|313696498|gb|EFS33333.1| luxR family transcriptional regulator [Bacteroides sp. D2] Length = 200 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +IM K K+ SG YAV N Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIMEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans] Length = 210 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K+ L+ RE E L W+S GKT E+++IL I+ TV ++ ++M+K A+ Sbjct: 144 KNVFLSPREREILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAV 199 >gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 233 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 13/136 (9%) Query: 105 PTELFCPVFH-TLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P EL + H +P + P +D R F R +G + IIL Sbjct: 105 PAELRALMLHHAIPAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILHA----- 159 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L AY VH L+ RE+E + W ++GKTS EI IL +S +TVN Y+ Sbjct: 160 --LDAYNTVRRNEESVHNA----LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMT 213 Query: 223 SIMRKTATKTRSGAIA 238 + ++K R+ +A Sbjct: 214 NAIKKLDCVNRTQLVA 229 >gi|146311212|ref|YP_001176286.1| DNA-binding transcriptional regulator CsgD [Enterobacter sp. 638] gi|145318088|gb|ABP60235.1| response regulator receiver protein [Enterobacter sp. 638] Length = 216 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGSSNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 210 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L + +G+T+ EIA L I TV ++ +I+ K R+ A A+R Sbjct: 146 ELTARELEVLHLVVKGQTNKEIAASLFIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 241 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL W ++GK++ EI ILGI T ++ + +K +T++ A+ Sbjct: 179 LTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2] gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] Length = 224 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K Sbjct: 164 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 205 >gi|239979192|ref|ZP_04701716.1| two-component system response regulator [Streptomyces albus J1074] gi|291451071|ref|ZP_06590461.1| two-component system response regulator [Streptomyces albus J1074] gi|291354020|gb|EFE80922.1| two-component system response regulator [Streptomyces albus J1074] Length = 213 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGRE + L ++G T +IAV L +S +TV NY+++ + KT+T+ R A+ A R Sbjct: 153 LTGRERDALNASADGATVADIAVRLRLSESTVRNYLSAAIGKTSTRNRMEAVREARRQG 211 >gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 201 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L ++EG + IA LGIS +TV ++A+++ K R+ AIA A+R Sbjct: 137 IHLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRTDAIATAMRQ 196 Query: 244 NIV 246 +V Sbjct: 197 GLV 199 >gi|325982862|ref|YP_004295264.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] gi|325532381|gb|ADZ27102.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] Length = 205 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAV 208 ++R++L + + AA+ + D+ K+ +LTGRE E +T +G T+ EIA Sbjct: 108 VIREKLL-VCVRAAFAEAKKRISDIARNKEMMSCLIKLTGREREVMTLAVQGHTNKEIAS 166 Query: 209 ILGISRNTVNNYIASIMRKTAT 230 LGIS TV + + IM+KT Sbjct: 167 CLGISHRTVEIHKSKIMQKTGA 188 >gi|229015004|ref|ZP_04172081.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|228746271|gb|EEL96197.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 188 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G + E LT E L IS+ KT+ EI+ L IS+ TV +I+SI+RK +R GA+ Sbjct: 118 MGNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVV 177 Query: 239 YAVRNNIV 246 ++ ++ Sbjct: 178 KGIKKGLI 185 >gi|167751935|ref|ZP_02424062.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216] gi|167660176|gb|EDS04306.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216] Length = 203 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +EL+ RE E L ++ G T+ EIA IS +TV ++ +I RKT KT +G YA+ Sbjct: 132 EGYELSEREREILVAVARGLTNREIADQYFISIHTVISHRKNITRKTGIKTIAGLTVYAL 191 Query: 242 RNNIV 246 NN++ Sbjct: 192 LNNMI 196 >gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++ G ++ EIA L I+ TV N+I+SI+RK + R+ A YA+ Sbjct: 157 LSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERG 215 >gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 209 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L IS GK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 147 ELTNREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFKHG 206 Query: 245 IV 246 + Sbjct: 207 YI 208 >gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L ++ G T+ +IA L +S T N+++ I+ K RS A YAV +N+ Sbjct: 148 ITEREREVLALVARGYTNKQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAVYAVEHNL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 211 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L ++ G S +IA LGI+ TV Y+ SI K +R+ AI A+R Sbjct: 160 IDLTEREREVLIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITVAIRY 219 Query: 244 NIV 246 I+ Sbjct: 220 GIL 222 >gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] Length = 213 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 225 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE+E L ++ G ++ EIA L + TV ++++ ++ K + RS AIA A R + Sbjct: 157 LTGRELEVLRLMAAGMSNAEIAGHLSLGEATVKSHVSRLLGKLGLRNRSQAIACAYRTGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|297156369|gb|ADI06081.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 280 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 155 LRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 LR+R L G LA +A+ + D EL+ REV+ L ++ G T+ A LG+ Sbjct: 189 LRERILSACGRLA--KASSGGTADTAARPGVELSPREVDVLACVASGATNSAAADRLGLR 246 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +Y+ S MRK TR A+ A R ++ Sbjct: 247 PETVKSYLRSSMRKLGAHTRLHAVVEARRAGLL 279 >gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 214 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L RE E L I++G T+ +I LG+S TV NY++SI+ K +R+ A Y ++ Sbjct: 155 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 212 >gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 209 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes] Length = 236 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL W ++GK+S E +I+G+S TVN +I + + K R + A+ Sbjct: 174 LTPREKECLRWTAKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAI 229 >gi|221067254|ref|ZP_03543359.1| transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|264678319|ref|YP_003278226.1| LuxR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|299532162|ref|ZP_07045556.1| transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|220712277|gb|EED67645.1| transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|262208832|gb|ACY32930.1| transcriptional regulator, LuxR family [Comamonas testosteroni CNB-2] gi|298719824|gb|EFI60787.1| transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 180 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H ELTGRE E + EG TS EI L IS TV Y A +MRK T Sbjct: 110 FEDLSAHRPVKAELTGREREVAARLLEGMTSKEIGKALAISHRTVEIYRARLMRKYGAST 169 >gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L RE E L I++G T+ +I LG+S TV NY++SI+ K +R+ A Y ++ Sbjct: 184 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQT 242 >gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 232 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 169 LTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKN 226 >gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 209 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE + L ++EG T+ ++A ILGIS TV+ + +IM K +T A A+R + Sbjct: 164 LSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNKLGVRTPVALAAIALREGL 223 Query: 246 V 246 V Sbjct: 224 V 224 >gi|308176496|ref|YP_003915902.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743959|emb|CBT74931.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 220 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR--SGAIAYAVRN 243 LTGRE E L ++EG ++ ++A LGI ++TV +++ ++ K TR + IAYA + Sbjct: 147 LTGREREVLDGLAEGLSNPQLAQRLGIGQSTVKTHVSQVLAKLGVSTRLQAAKIAYAATS 206 Query: 244 N 244 + Sbjct: 207 S 207 >gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE+E L ++EG ++ EIA L IS+ TV +++ I+ K + R A+ YA R Sbjct: 155 EVPLTPRELEVLRLLAEGLSNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYR 214 Query: 243 NNI 245 + + Sbjct: 215 HGL 217 >gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto BEST195] Length = 220 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE+E L + G + EIA L I+ TV N++++I+ K A + R+ A Y+VR Sbjct: 156 LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVR 214 >gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei] Length = 239 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ + Sbjct: 176 LTHRERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|333020553|gb|EGK39813.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-227] Length = 190 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 98 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 157 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187 >gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ IS+G ++ EI L IS TV NY ++ +K R A A+ NNI Sbjct: 155 LSKREIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIENNI 214 >gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 239 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+W SEG+T+ EI L IS TV +I +I+ K + A+ A+ + Sbjct: 176 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus] gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 200 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT+++IA L +S TV NYI+ ++ K K R AI Sbjct: 134 WQEQNPLSDREREVLLLAKEGKTTNDIAKALYLSPGTVRNYISEVLTKLNAKNRIEAITI 193 Query: 240 A 240 A Sbjct: 194 A 194 >gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 209 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G + EIA L IS TV ++++I+ K R+ A+ YA ++N Sbjct: 147 DLTEREQEVLQLMARGMANQEIADELFISLKTVKTHVSNILSKLDVVDRTQAVVYAFKHN 206 Query: 245 IV 246 IV Sbjct: 207 IV 208 >gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 210 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 37/56 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LTGRE E + ++ G ++ EIA+ L IS+ TV N+++S++ K + R+ A+ A+ Sbjct: 150 LTGREREVVRLMAGGYSNREIALALHISQGTVKNHVSSVLSKLGVRDRTRAVLKAL 205 >gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 225 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%) Query: 171 NMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 F+S+ + G+ + LT RE + L W+ +G ++ IA L I+ TV ++ ++ Sbjct: 142 GFFRSFHFYEGRAVQSEQTLHLTAREKQVLHWLVQGASNQAIANHLHITIATVKAHLTAV 201 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K K+RS AI A++ +V Sbjct: 202 FEKLEVKSRSQAIVKALKLGLV 223 >gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata] Length = 242 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 P II+R L+ I L+ AN ++ + + +L+ RE+E L W++ GK EI + Sbjct: 146 PDFPIIVRSNLFIIKTLSVI-ANQYRPMETTIESNLKLSPREIEFLRWLALGKNYKEIGL 204 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ I+ TV + + K A+ AV+ N V Sbjct: 205 IMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNFV 242 >gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 213 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 211 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 221 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA+ + D+ G D LT RE E L I+ GKT+ EIA L I+ TV ++ +I+ Sbjct: 140 AAFSKKPTINCDIIEGIDNPLTQREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAIL 199 Query: 226 RKTATKTRSGAIAYAVRN 243 +K + R+ A A+++ Sbjct: 200 QKLDVRDRTQAAIIALQH 217 >gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL N1-067] Length = 228 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223 >gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 211 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELTGRE++ L ++ G ++ EIA L ++ TV ++ +I K + R+ AI +A + Sbjct: 150 ELTGRELDVLRLMARGASNREIAGRLCLAETTVKTHVGAIFGKLGARDRAAAIVFAYDSG 209 Query: 245 IV 246 IV Sbjct: 210 IV 211 >gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 509 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE+E L + G ++ EI LG++ NTV N+IA I K R+GA+ +A Sbjct: 435 DLTPRELEVLGLMCRGLSNAEIVKKLGVTHNTVRNHIARIYAKIDVHDRAGAVVWA 490 >gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1] gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1] gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1] Length = 239 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+W SEG+T+ EI L IS TV +I +I+ K + A+ A+ + Sbjct: 176 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp. subtilis str. 168] gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp. subtilis str. 168] gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp. subtilis str. SMY] gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yfiK gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis] gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp. subtilis str. 168] Length = 220 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE+E L + G + EIA L I+ TV N++++I+ K A + R+ A Y+VR Sbjct: 156 LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVR 214 >gi|330952743|gb|EGH53003.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 238 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 35/52 (67%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++F +T RE E W + GKT +EIAV L IS+ TV+ +I++++ K +T+ Sbjct: 174 ENFTITDREKEVYIWTAIGKTCNEIAVNLNISKRTVDFHISNVISKLGVRTK 225 >gi|313499754|gb|ADR61120.1| LuxR family DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 219 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L I GK++ EIA LG+S TV + + IM++ +G + +AVR I Sbjct: 155 LTSRQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKI 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] Length = 216 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 4/85 (4%) Query: 165 LAAYQANMFK----SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +A + AN+FK + + K L+ RE+E I++G ++ +I+ +L IS TV NY Sbjct: 130 IALFVANIFKKDLQNVNTTENKLKNLSERELEIARLIAQGYSNKDISKMLFISEGTVRNY 189 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 I++I+ K K R+ Y + N++ Sbjct: 190 ISTILEKLELKNRTQIAIYYLSNSL 214 >gi|148550964|ref|YP_001260394.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] gi|148503375|gb|ABQ71627.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 289 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 45/83 (54%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 IG +A QA D L+ R+++C+ +++GK+ EI ILG+SR+TV+ Y+ Sbjct: 199 IGTVAFDQARTLLGPDELANVPIALSPRQIDCIDLVAQGKSDWEIGQILGLSRDTVHEYV 258 Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244 R+ + R+ + AVR+ Sbjct: 259 EGARRRYGVRRRTQLVLRAVRDG 281 >gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262] gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e] gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes Clip81459] gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes 10403S] gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503] gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes J0161] gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-064] gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28] gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL J1-175] gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e] gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262] gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes] gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503] gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL S4-378] gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL J1-023] gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816] gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220] gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes str. Scott A] Length = 228 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223 >gi|237880805|gb|ACR33063.1| response regulator [Actinoplanes garbadinensis] Length = 222 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE E L + +G T E+A LG+S TV ++ +I RKT T R+ A+ A+ N+ Sbjct: 152 REAEVLDLLRQGLTDREMARRLGLSAKTVEKHVGAIRRKTGTSNRTAAVVTALDND 207 >gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 209 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L+ ++EG T+ E+ L IS TV ++ I K TRS A++ A+R + Sbjct: 148 LTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRRD 206 >gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 218 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I+ GKT+ EIA +L I+ TV ++ +I++K + R+ A A+R N Sbjct: 160 LTQREQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALRMN 218 >gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] Length = 213 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 225 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVIL 210 +LRD ++ +A +F Y H + LT RE E L W+ G ++DEIA L Sbjct: 128 VLRDEIYLPPEVATQFFRLFHYYAGHTVQSRSRIHLTEREQEVLHWLVRGASNDEIARNL 187 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I K +R+ AI A++ +V Sbjct: 188 YITIATVKAHLSAIFEKLQVTSRTQAIVAALKLGLV 223 >gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319] gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319] gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319] Length = 227 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 164 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 222 >gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 213 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L ++ G+ + EIA L I TV ++++I+RK +R+ A YAVR Sbjct: 146 KLTERETDVLRLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIG 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus LMG 18311] Length = 214 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N K +D H +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 134 NKIKYHDSHPNLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 194 DDRTQAVVYAFRHHLV 209 >gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase modulator gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa] gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa] gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1] gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa] gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10] gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19] gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa] gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5] Length = 241 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222 >gi|317476845|ref|ZP_07936088.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907020|gb|EFV28731.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 217 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT RE++ L ISEGK + EIA L +S NTV+ + ++ K K + I A Sbjct: 147 GRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVADLIMTA 206 Query: 241 VRNNIV 246 + I+ Sbjct: 207 ISRGII 212 >gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] Length = 228 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223 >gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 223 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE+ L +++GKT+ EIA L +S TV N++ +I K R+ A A+R Sbjct: 154 EHDLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVYDRTQAAILAIR 213 Query: 243 NNIV 246 ++ Sbjct: 214 KGLI 217 >gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L +++G T+ +IA L IS T+ N+I++I+RK R+ A A+R Sbjct: 159 LTQRERQILIRVTDGLTNKQIATELKISEQTIKNHISAILRKLNANDRAHAAVLAIR 215 >gi|229021072|ref|ZP_04177731.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229024513|ref|ZP_04180960.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228736801|gb|EEL87349.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740232|gb|EEL90571.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 188 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G + E LT E L IS+ KT+ EI+ L IS+ TV +I+SI+RK +R GA+ Sbjct: 119 GNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVK 178 Query: 240 AVRNNIV 246 ++ ++ Sbjct: 179 GIKKGLI 185 >gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 211 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|218129935|ref|ZP_03458739.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697] gi|217988045|gb|EEC54370.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697] Length = 217 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT RE++ L ISEGK + EIA L +S NTV+ + ++ K K + I A Sbjct: 147 GRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVADLIMTA 206 Query: 241 VRNNIV 246 + I+ Sbjct: 207 ISRGII 212 >gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa] gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa] Length = 241 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222 >gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1] gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1] Length = 213 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L +++GK++ EIA L I+ TV +I++I K R+ A YAV++ Sbjct: 149 HQLTNRERDVLKELAKGKSNKEIAASLYITEKTVKTHISNIFAKLEVSDRTQAALYAVKH 208 Query: 244 NI 245 + Sbjct: 209 GL 210 >gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator [Pseudomonas sp. M18] Length = 215 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K Sbjct: 155 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 196 >gi|77460178|ref|YP_349685.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384181|gb|ABA75694.1| putative LuxR family response regulator [Pseudomonas fluorescens Pf0-1] Length = 219 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT R++E L I GK++ EIA LG+S TV + + IM++ +G + +A Sbjct: 150 AESHNLTARQLEILRLIVRGKSTREIANGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFA 209 Query: 241 VRNNIV 246 VR I+ Sbjct: 210 VREQII 215 >gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5] gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5] Length = 220 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE+E L + G + EIA L I+ TV N++++I+ K A + R+ A Y+VR Sbjct: 156 LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVR 214 >gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 209 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ E E L+W + GKT+ E A ILG+S V ++ RK TK ++ +A A Sbjct: 175 GQSRRLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLETKNKTATVATA 234 Query: 241 VRNNIV 246 + N + Sbjct: 235 LVNGEI 240 >gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] Length = 191 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L W++EGK+ EI VIL +S + V+ + K R+ A A+R+N+ Sbjct: 130 LTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQTAATALRHNL 189 Query: 246 V 246 + Sbjct: 190 I 190 >gi|330960353|gb|EGH60613.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 220 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S TV + + IM++ +G + + VR Sbjct: 154 YNLTARQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1] gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 234 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K Sbjct: 174 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 215 >gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2] gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2] Length = 209 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++ Sbjct: 147 DLTNREKEVLLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHG 206 Query: 245 I 245 + Sbjct: 207 L 207 >gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae] Length = 257 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA ILGI TV +I S+++K AI V Sbjct: 192 FSPRENEILYWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMNAKHAIRLGVE 248 >gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 82 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L W + GK+S EI IL +TVN ++++I+RK TR A+ A+R + Sbjct: 19 LTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDVPTRVVAVIKAIRYGL 78 Query: 246 V 246 + Sbjct: 79 L 79 >gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] Length = 242 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222 >gi|118464557|ref|YP_883346.1| LuxR family transcriptional regulator [Mycobacterium avium 104] gi|118165844|gb|ABK66741.1| transcriptional regulator, LuxR family protein [Mycobacterium avium 104] Length = 523 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EIA L IS T N++ K R GA YA+++ + Sbjct: 456 LTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGL 515 Query: 246 V 246 V Sbjct: 516 V 516 >gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 207 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|296168969|ref|ZP_06850636.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896355|gb|EFG76010.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 530 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G+++ EIA L IS TV N++ I K R GA YA R+ + Sbjct: 465 LTRREAEVLLHVARGQSNREIASALWISEKTVRNHVERIYAKIGVSNRIGASLYATRHGL 524 Query: 246 V 246 Sbjct: 525 T 525 >gi|254776638|ref|ZP_05218154.1| transcriptional regulator, LuxR family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 523 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EIA L IS T N++ K R GA YA+++ + Sbjct: 456 LTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGL 515 Query: 246 V 246 V Sbjct: 516 V 516 >gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 227 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L WIS+G + EIA + +S TV N+++ I++K R+ A +A Sbjct: 152 LTPREMEVLYWISQGLNNGEIARKMVLSEKTVKNHVSHILKKLDLVDRTQAAVFA 206 >gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 229 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNNRTQAVVVAIKN 223 >gi|168789970|ref|ZP_02814977.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli O157:H7 str. EC869] gi|189370464|gb|EDU88880.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli O157:H7 str. EC869] Length = 240 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 47/87 (54%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 219 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 157 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 215 >gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 215 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 5/95 (5%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G+I+L + L I + +A ++ D++ +LT RE E L IS+G T+ IA L Sbjct: 125 GQIVLSEALTPILVARLREAQPGQTRDIN-----QLTRREREILQLISDGMTNKAIARKL 179 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS +TV ++ +++K K+R A +A++N + Sbjct: 180 DISESTVKVHVKYLLKKMNLKSRLEAAVWALQNGL 214 >gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 228 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223 >gi|312960102|ref|ZP_07774614.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285596|gb|EFQ64165.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 498 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A Sbjct: 427 DLTARERDVLGLICEGLADKEIASRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWA 482 >gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans] Length = 210 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|41409450|ref|NP_962286.1| hypothetical protein MAP3352c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398281|gb|AAS05902.1| hypothetical protein MAP_3352c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 523 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EIA L IS T N++ K R GA YA+++ + Sbjct: 456 LTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGL 515 Query: 246 V 246 V Sbjct: 516 V 516 >gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] Length = 219 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D H G LT RE E L ++ G ++ IA L ++ +TV Y+ SI+RK +R A Sbjct: 146 DAHIGT---LTPRERETLHHLAIGHSNKVIAKKLNLAESTVKAYVQSILRKLGLSSRVQA 202 Query: 237 IAYAVRNNI 245 YA++++I Sbjct: 203 AVYAIQHDI 211 >gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 212 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +S G ++ EI L IS TV ++++I+ K R+ A+ YA + N Sbjct: 147 QLTARELEVLELMSRGMSNQEIGDALYISLKTVKVHVSNILSKLGVHDRTQAVIYAFKEN 206 Query: 245 I 245 + Sbjct: 207 L 207 >gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 494 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A Sbjct: 424 ELTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWA 479 >gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Paenibacillus polymyxa E681] Length = 217 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L+W+++G + EIA L IS TV ++ +++M K + KTR + +A++ + Sbjct: 154 LSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLKTRPELVKFALKKGL 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|297516127|ref|ZP_06934513.1| DNA-binding transcriptional regulator CsgD [Escherichia coli OP50] Length = 114 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 22 VLRGECYFTQKLASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFIS 81 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 82 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 111 >gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus CNRZ1066] gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus thermophilus ND03] Length = 214 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N K +D H +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 134 NKIKYHDSHPNLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 194 DDRTQAVVYAFRHHLV 209 >gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 217 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ REV+ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 150 ELSEREVQILKLVAQGYTNLEIAGELSLSEKTVRNRLSEIFQKLHLNNRTQAALYALREG 209 Query: 245 IV 246 + Sbjct: 210 LA 211 >gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans] gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans] Length = 210 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans] Length = 210 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans] gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans] gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans] Length = 210 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199 >gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 235 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 172 LTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKN 229 >gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa] Length = 241 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222 >gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 215 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708] gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 91 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 39/62 (62%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A Sbjct: 7 GTPVSLSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRVALVRWA 66 Query: 241 VR 242 ++ Sbjct: 67 LQ 68 >gi|325676336|ref|ZP_08156015.1| response regulator [Rhodococcus equi ATCC 33707] gi|325552897|gb|EGD22580.1| response regulator [Rhodococcus equi ATCC 33707] Length = 231 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + F L+GRE + L +++G ++ EIA L ISR TV ++ +I KT T++R Sbjct: 167 ESFRLSGREHQILVLVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSR 218 >gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 135 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L RE E L I++G T+ +I LG+S TV NY++SI+ K +R+ A Y ++ Sbjct: 75 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 132 >gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 30/49 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE ECL W EGK+S +I+ ILG S+ TV ++ + K T R Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232 >gi|325282015|ref|YP_004254557.1| two component transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] gi|324313824|gb|ADY34377.1| two component transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] Length = 223 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D E++ RE+E L + G ++ EIA L IS+ TV+ + A+++ KT + + + YA++ Sbjct: 158 DNEISERELEILYHVCLGLSNQEIADKLFISKRTVDKHRANLLSKTGCRNTAALVMYAIK 217 Query: 243 NNIV 246 N ++ Sbjct: 218 NKMI 221 >gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL S4-171] Length = 228 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223 >gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] Length = 69 Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 6 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 65 Query: 246 V 246 V Sbjct: 66 V 66 >gi|229491816|ref|ZP_04385637.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229321497|gb|EEN87297.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 292 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ LT G T+++IA +LG++ TV +Y+ S M K TR A+ A R + Sbjct: 231 LTKREIDVLTVAGAGMTNNQIAGVLGLALFTVKSYMKSAMHKLGASTRLEAVVLARRGGM 290 Query: 246 V 246 + Sbjct: 291 I 291 >gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 218 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G+++ EIA L +S TV +++ +++K + R+ A+ YA + Sbjct: 155 LTPREREVLEAVAAGRSNAEIAETLFVSEQTVKTHVSKVLQKLGLRDRAQAVVYAYETGV 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti] Length = 241 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL W ++GK++ EI ILGI T ++ + +K +T++ A+ Sbjct: 179 LTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2] gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2] Length = 216 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I++GK++ EIA L IS TV ++++++ K R+ A +AV++ Sbjct: 150 QLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHG 209 Query: 245 I 245 + Sbjct: 210 L 210 >gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 214 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R+ +CL ++ G+++ EIA +L + TVN +I S M K+R+ A+ A++ Sbjct: 142 LTNRQCQCLEFVGAGRSTKEIARLLSLHPGTVNYHIDSAMEALGVKSRAHAVQKALQ 198 >gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 224 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ ++ EIA L IS TV ++++I+RK + RS AI Y+ +N + Sbjct: 160 LTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRSQAIVYSYKNGL 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|111224247|ref|YP_715041.1| LuxR family transcriptional regulator [Frankia alni ACN14a] gi|111151779|emb|CAJ63499.1| Putative LuxR-family transcriptional regulator (partial) [Frankia alni ACN14a] Length = 137 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F LT RE+E LT ++ G ++ E A L I TV Y+ SIMRK + R+ A+ A Sbjct: 74 FRLTLREMEVLTLVATGCSNVEAAEQLTIRAETVKTYMRSIMRKMGVRNRTAAVHTA 130 >gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis KT71] gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis KT71] Length = 225 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L + +G + EIA LGI TV +++S++ K + R+ A+ +A + + Sbjct: 156 LTGREQEALRCVGDGMNNQEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYESGL 215 >gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Clostridium cellulovorans 743B] gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] Length = 805 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 E+ +A Y N K DFE L+ +E+E + I+EG T+ EIA L IS TV Sbjct: 724 ELKKMAIYYPNYIKE-----KHDFEELSKKELEVIRLIAEGCTNGEIAARLDISTATVKF 778 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245 +IA++++K + R A+ A N++ Sbjct: 779 HIANLLKKLNAENRIMAVKIASENDL 804 >gi|239990355|ref|ZP_04711019.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447364|ref|ZP_06586754.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350311|gb|EFE77215.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 315 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + + L+ REVE + I+ G ++ +IA IS TV N+I I K + TRS AIA+ Sbjct: 245 QQYGLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIAH 302 >gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 215 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 87 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 40/59 (67%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ +IAV L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 10 VSLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVALVRWALQ 68 >gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45] gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45] Length = 253 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE ECLT+ S G ++ E A I+ S TV ++ + MRK + R+ A+ A Sbjct: 189 QEVRLTPRERECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAVTIAT 248 Query: 242 RNNIV 246 R ++ Sbjct: 249 RRRLI 253 >gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++EG T+ +IA L IS TV ++ +IM K R+ + YA+R Sbjct: 150 DLTDRELEVLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIMEKLDLHDRTDLVKYAIRRG 209 Query: 245 IV 246 ++ Sbjct: 210 MI 211 >gi|328886525|emb|CCA59764.1| hypothetical protein SVEN_6478 [Streptomyces venezuelae ATCC 10712] Length = 204 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE+ L+ ++G EIA L +++ TV NY+AS++RK + R AI A Sbjct: 141 EMPLTRRELSVLSLAADGAPVAEIAATLFLTKGTVRNYMASVIRKVGARNRVDAIRIA 198 >gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 37/57 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 EL+ RE + + W ++GKT+ EIA+IL IS ++VN ++ + ++K ++ A+ A Sbjct: 201 ELSQRERDVIRWCADGKTNAEIAMILNISTSSVNFHVLNFIKKLDASNKTHAVMKAA 257 >gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74] gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74] Length = 264 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I Sbjct: 201 LTDREMDVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 260 Query: 246 V 246 + Sbjct: 261 L 261 >gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] Length = 248 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLTTVKTHVAHILSKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 214 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N K +D H +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 194 DDRTQAVVYAFRHHLV 209 >gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] Length = 199 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D +G++ LT RE E L I++GK + EIA L I TV NYI++I+ K R A Sbjct: 129 DDVYGEENPLTDREKEVLELIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNRIEA 188 Query: 237 IAYA 240 I + Sbjct: 189 ITQS 192 >gi|239627726|ref|ZP_04670757.1| two-component protein Kinase [Clostridiales bacterium 1_7_47_FAA] gi|239517872|gb|EEQ57738.1| two-component protein Kinase [Clostridiales bacterium 1_7_47FAA] Length = 209 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE++ + +++G + EIA L ++ TV N I+ ++ K K R+ +AV+ Sbjct: 145 DLDLTPREMDIMRLVAQGMDNREIAAGLFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVK 204 Query: 243 NNI 245 NN+ Sbjct: 205 NNL 207 >gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EGK + E+A IL +S TV + +I++K + + I YA+R + Sbjct: 155 LTTREREVLQLLAEGKNNKEVAAILNLSLYTVETHRGNILQKLNLHSGAELILYAIRKGV 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 241 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+GRE E L I+EG + +IA LGIS +TV ++ I+R+ R+ A +A Sbjct: 177 LSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAAAVWA 231 >gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] Length = 240 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+W SEG+T+ EI L IS TV +I +I+ K + A+ A+ + Sbjct: 177 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGL 236 Query: 246 V 246 + Sbjct: 237 I 237 >gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 215 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T REVE L ++ G + E+A + IS TV ++A + K TR+GA+A A+ I Sbjct: 152 ITEREVEVLELLARGMGNKELAKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRI 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|326772918|ref|ZP_08232202.1| two-component system response regulator TcsR7 [Actinomyces viscosus C505] gi|326637550|gb|EGE38452.1| two-component system response regulator TcsR7 [Actinomyces viscosus C505] Length = 230 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 6/108 (5%) Query: 143 GLMLLFPKGRIILRDRLWEI----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 G ++L PK +L +RL G + ++ + +G L+ RE+E L IS Sbjct: 124 GNIVLTPKSSAVLSERLQPASADRGSTPPPSFSRKEASPLPFG--VTLSTRELEVLALIS 181 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E T+ +IA L +S T+ +++++I+ K R GA +A+++ +V Sbjct: 182 EALTNKQIANRLNLSEATIKSHVSAIIAKLGVPDRVGAAVFAMQHGLV 229 >gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 209 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|255325408|ref|ZP_05366512.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] gi|255297494|gb|EET76807.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] Length = 219 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L+ I+ G T+ EIA + I+ TV +++S+M K A + R + +A R I Sbjct: 159 VTRREMEVLSLIARGATNSEIAAEMVIAETTVKTHVSSLMSKLAARDRVALVLFAQRAGI 218 >gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] Length = 207 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 244 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Query: 172 MFKSY--DVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + +SY G++ E LT RE E L ++EG +S EIA L IS TV + A+I+ K Sbjct: 164 LIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFISVKTVERHRANILAK 223 Query: 228 TATKTRSGAIAYAVRNNIV 246 K R YA+R ++ Sbjct: 224 LGMKDRLELTRYAIRTGLI 242 >gi|262199427|ref|YP_003270636.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082774|gb|ACY18743.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 394 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 F LT RE E WIS GK++ +IA IL I TV + I K + R+ + Sbjct: 320 FRLTPREAEVALWISRGKSNQDIATILSIRPGTVKKHAERIFMKLGVENRASVV 373 >gi|124265956|ref|YP_001019960.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258731|gb|ABM93725.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 919 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 36/54 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE E + ++EG+++ IA LG+S +TV ++A+I+ K A +R+ A AY Sbjct: 862 LSAREREVMALLAEGQSNKLIARALGLSLHTVKRHVANILTKLALDSRTQAAAY 915 >gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144] gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus epidermidis RP62A] gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144] gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU144] gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU045] gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU028] Length = 207 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L + +GKT+ EIA L +S TV +++ I K R+ A YA+ N Sbjct: 146 KLSKREKEVLKEMVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|255009756|ref|ZP_05281882.1| LuxR family transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313147543|ref|ZP_07809736.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313136310|gb|EFR53670.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 200 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 134 ELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 193 Query: 245 IV 246 V Sbjct: 194 YV 195 >gi|167763839|ref|ZP_02435966.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC 43183] gi|298480014|ref|ZP_06998213.1| transcriptional regulator [Bacteroides sp. D22] gi|167697955|gb|EDS14534.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC 43183] gi|298273823|gb|EFI15385.1| transcriptional regulator [Bacteroides sp. D22] Length = 183 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ R++E + + +GK EIA L IS NTVNN+ + RK + + + YA+ NN Sbjct: 121 KLSDRQIEVMRMLYDGKNDSEIAEKLFISLNTVNNHRKNSFRKVGVHSMAEFMRYAMTNN 180 Query: 245 I 245 + Sbjct: 181 L 181 >gi|158425732|ref|YP_001527024.1| two component transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332621|dbj|BAF90106.1| two component transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 310 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +T RE E L WI+ GK + +IA ILG+S TVN ++ I K + R Sbjct: 248 ITQREAEVLLWIARGKPNRDIAEILGLSPRTVNKHLEQIYAKIGVENR 295 >gi|261365900|ref|ZP_05978783.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] gi|288565546|gb|EFC87106.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] Length = 220 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +T+ ++ SI+RK +R A YAV++N+ Sbjct: 157 LTTRELEILGYLAAGHSNKIIARKLNLAESTIKVHVQSILRKLELSSRVQAAVYAVQHNV 216 >gi|170692899|ref|ZP_02884061.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142555|gb|EDT10721.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 240 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT+I+ G ++ EIA L IS TV ++ I+RK +R A YA N I Sbjct: 175 LSIREQEILTYIARGASNKEIARALAISETTVKIHVQHILRKLKLTSRVQAAVYATVNAI 234 >gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 215 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%) Query: 158 RLWEIG-------LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209 RL E+G LL A+ ++ D G E LT R+ E L + +G+++ EIA + Sbjct: 114 RLIELGGRYIPDILLTAHAEGFAETTDSFLGAGHEKLTPRQREVLLELGKGRSNQEIAHV 173 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LGIS TV ++ +I++ + R+ A A+R Sbjct: 174 LGISIATVKLHVNAILQTLGVRNRTEAAIIALR 206 >gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] Length = 294 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE +CL GKTS EI +IL +S T++ Y+ + RK R+ A+A A + Sbjct: 233 LSVRERDCLKLAMLGKTSSEIGIILSLSEYTISQYLTAAQRKLDASNRTHAVALAAQ 289 >gi|72163208|ref|YP_290865.1| regulatory protein LuxR [Thermobifida fusca YX] gi|71916940|gb|AAZ56842.1| regulatory protein, LuxR [Thermobifida fusca YX] Length = 286 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++ G T+DE+A LG+ NTV +Y+ S MRK R A+ A Sbjct: 225 LSPREREVLAEVARGCTNDEVAEALGLLPNTVKSYLKSAMRKLGATNRVQAVNLA 279 >gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 165 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 222 >gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis] Length = 246 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Query: 161 EIGLLAA-YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRN 215 +I LLA + A + K D G D LT RE E L W + GK+ E AVILGIS Sbjct: 153 DIHLLAGKFHAGLVKRCD---GADIAGTPPLTRREQETLRWTAAGKSYWETAVILGISER 209 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++A+ K + + A+ A++ ++ Sbjct: 210 TVRYFMANARIKLDAVSNTQAVVKALQRGLI 240 >gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W] Length = 192 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|254245083|ref|ZP_04938405.1| hypothetical protein PA2G_05969 [Pseudomonas aeruginosa 2192] gi|126198461|gb|EAZ62524.1| hypothetical protein PA2G_05969 [Pseudomonas aeruginosa 2192] Length = 130 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D EL REV+CL ++ G T + A+ LG+S TV I M K R +A A+R Sbjct: 19 DSELAAREVQCLLAVAGGCTDKQAALSLGVSPRTVKGAIERAMHKLNAYRRPALVAEAMR 78 Query: 243 NNIV 246 ++ Sbjct: 79 RGLI 82 >gi|126433026|ref|YP_001068717.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126232826|gb|ABN96226.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 544 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE+E L ++ G T+ EIA L IS TV ++ +I K +R+ A AYA Sbjct: 479 GAPSGLTTRELEVLRLLATGATNREIARTLVISEKTVARHLGNIFNKLDVSSRTAATAYA 538 Query: 241 VRNNIV 246 ++++V Sbjct: 539 YQHDLV 544 >gi|108797407|ref|YP_637604.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866491|ref|YP_936443.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108767826|gb|ABG06548.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692580|gb|ABL89653.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 544 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE+E L ++ G T+ EIA L IS TV ++ +I K +R+ A AYA Sbjct: 479 GAPSGLTTRELEVLRLLATGATNREIAHTLVISEKTVARHLGNIFNKLDVSSRTAATAYA 538 Query: 241 VRNNIV 246 ++++V Sbjct: 539 YQHDLV 544 >gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 222 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +S GK++ EIA L IS TV N++ I K R+ A YA+++ + Sbjct: 157 LTAREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAALYALKHGL 216 >gi|291537091|emb|CBL10203.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis M50/1] Length = 261 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 H +FEL+ RE E LT + G T+ +IA +GIS +TV ++ I K TR+ Sbjct: 191 AHLAAEFELSEREKEALTCMDGGMTNAQIAENMGISLSTVKKHVYHIFEKVGVDTRA 247 >gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ L ++EG ++ EIA L I+R TV Y++ I+ K + R A+ +A + Sbjct: 155 DGPLTPRELDVLRLLAEGLSNAEIAAALVITRETVKTYVSRILTKLDLRDRVQAVVWAYQ 214 Query: 243 NNIV 246 +V Sbjct: 215 TGLV 218 >gi|254446876|ref|ZP_05060351.1| transcriptional regulator, LuxR family, putative [Verrucomicrobiae bacterium DG1235] gi|198256301|gb|EDY80610.1| transcriptional regulator, LuxR family, putative [Verrucomicrobiae bacterium DG1235] Length = 58 Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L WI EGKT+ +I IL IS TV + SI RK + R AI +A+ +N Sbjct: 2 LFWIVEGKTNGDIGRILEISPRTVEKHCESIFRKLGIENRYAAIVFALTSN 52 >gi|26990610|ref|NP_746035.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24985594|gb|AAN69499.1|AE016584_7 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 183 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G+ L RE++CL +++G T+ EIA GIS + V I M K R+ +A Sbjct: 68 HLGRG--LAPRELQCLLEVAQGFTTKEIAKHFGISESGVEKRIGDAMLKLKVARRAAMVA 125 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 126 EAMRRQII 133 >gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 192 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 208 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 KG+ IL ++ A N F+ +LT RE+E L I+ GK++ E+A Sbjct: 117 KGQPILESQV------ATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADE 170 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I TV ++ ++++K + R+ A YA ++ IV Sbjct: 171 LFIGVKTVKFHVTNVLQKLGVEDRTQAAIYAFKHGIV 207 >gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] Length = 240 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + RE+E L W +EGKT+ EI++IL IS +TVN + ++ ++ ++ YA Sbjct: 180 FSQRELEILKWTAEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAA 235 >gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 223 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 38/219 (17%) Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-----CPVFHT 115 L+V D+ + L SI S + FD++ ++ E +LQ L ++ Sbjct: 6 ILIVAEDISSRRGLVSIFSLESMFDMLGGYSIDEAINKLVLLQPDVVLINIVGDISIYML 65 Query: 116 LPENITPP-------AGMDNRYCSLTFDVARI-RIGLMLLFPKGRIILRDRLWEIGLLAA 167 L + I + +DN+ ++A++ GL PKG +L L +I L+ Sbjct: 66 LIKKIKSECPYSLVLSIIDNKKSE---EIAKVLNQGLDGYIPKG--VLSGYLVKIVELSC 120 Query: 168 YQA--------------NMFKSYDVHWGKDF------ELTGREVECLTWISEGKTSDEIA 207 Y N K ++H K+ L+ RE+E L +S+ ++ EIA Sbjct: 121 YTGLFCLPGFVKNMVSFNSSKKNNIHKMKNSVVESCENLSKREMEILKLMSQNHSNTEIA 180 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +L IS TV ++++I+RK + R+ AI Y++ ++ Sbjct: 181 GMLYISLPTVKTHVSNILRKLGQQNRAQAILYSIATGLI 219 >gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 224 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 T REV+ L ++ G ++ +I L +S TV Y++S++RKT T R+ + +A+ + Sbjct: 160 LHFTPREVQVLNLLTTGLSNGDIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDH 219 Query: 244 NIV 246 +++ Sbjct: 220 HLI 222 >gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22] gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei 87.22] Length = 236 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+EG ++ E+A +LGI+ +T ++ ++ K + R+ A+ A R+ + Sbjct: 168 LTAREAQVLRLIAEGLSNAELAELLGIAESTAKTHVKRVLHKIGARDRAQAVVLAYRSGL 227 Query: 246 V 246 + Sbjct: 228 M 228 >gi|29833873|ref|NP_828507.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29610998|dbj|BAC75042.1| putative LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 900 Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+GRE E L ++E +++EIA L +S NTV ++ S+ RK A R A+ A Sbjct: 839 ELSGREREVLQRLAEMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVNRRHDAVRRA 894 >gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE + L ++ G TS EI L IS TVN +I +I RK +TR+ A+++A Sbjct: 201 KLSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIKNIYRKLNVRTRAQAVSFAA 257 >gi|326334307|ref|ZP_08200525.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] gi|325947916|gb|EGD40038.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE+E L I++G + EIA L +S NT+ ++I RK TRS A+++A Sbjct: 132 GAAAGLTVREIEVLKLITQGLPNQEIAKRLAMSGNTLKSHIRRAYRKIHVTTRSQAVSWA 191 Query: 241 VRNNI 245 + + + Sbjct: 192 IAHGL 196 >gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580] gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580] Length = 217 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I++GK++ EIA L IS TV ++++++ K R+ A +AV++ Sbjct: 150 QLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHG 209 Query: 245 I 245 + Sbjct: 210 L 210 >gi|121606967|ref|YP_984296.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595936|gb|ABM39375.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 246 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I+ G T+DEIA +L +S +TV Y+ I K ++++ AI A + I Sbjct: 184 LSSREMEVLQLITRGFTADEIARLLQVSSHTVQTYVRRIYSKLKVRSKAEAIYEARQQGI 243 Query: 246 V 246 + Sbjct: 244 L 244 >gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 217 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L I+ G ++ EIA L IS TV NY++S++ K A + R+ AI A Sbjct: 156 LTEREMDVLHGIAAGHSNREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRA 210 >gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032] gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032] Length = 229 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223 >gi|71737558|ref|YP_276359.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558111|gb|AAZ37322.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 209 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ G LT R+ E L ++ GKT+ EIA LGIS T+ +++S+++ TRS A Sbjct: 138 DLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTMRIHVSSLLKALGVSTRSAA 197 Query: 237 IA 238 A Sbjct: 198 AA 199 >gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 209 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H D LT R++E L ++EG+++ EIA L IS TV +I +I++K + R+ A+ Sbjct: 140 HVASD-ALTARQLEVLRSLAEGRSNIEIANTLYISEGTVKAHIKAILQKLGARDRTQAVT 198 Query: 239 YAVRNNIV 246 ++ ++ Sbjct: 199 IGIKRGLI 206 >gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 220 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L +++G ++ IA +L IS NTV +I++I+ K +R+ A++ ++ + Sbjct: 158 LTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKAGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] Length = 220 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+++ G ++ IA L I TV ++ SI RK R+GA+A A+R I Sbjct: 159 LTQRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSDRAGAVATALREGI 218 >gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 249 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 188 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 247 Query: 245 IV 246 +V Sbjct: 248 LV 249 >gi|116672252|ref|YP_833185.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612361|gb|ABK05085.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 426 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D++L RE+E L ++ G+ + IA L IS NTV ++ +I RK +R+ AIA A Sbjct: 363 DWKLGDRELEVLQLLAAGQRNRAIAAKLHISENTVKFHLRNIYRKVGATSRTEAIAMAHS 422 Query: 243 NNI 245 N + Sbjct: 423 NGV 425 >gi|322831866|ref|YP_004211893.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321167067|gb|ADW72766.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 216 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R ++R + A+Y N ++ ++ LT RE E L + G ++ EIA +L Sbjct: 122 RSVIRGECYFSQGFASYLINQSGAFRHLHSEETGLTHREKEILNKLRVGASNTEIARLLF 181 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 IS NTV ++ ++ RK + K R+ A ++A N Sbjct: 182 ISENTVKTHLYNLFRKISVKNRTQAASWANDN 213 >gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 222 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 39/61 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++++G+++ EIA L ++ +TV ++ +I++K +R A YAV + Sbjct: 157 KLTPREREILGFLAQGQSNKEIARTLDLAESTVKIHVQNILKKLGLSSRVQAAVYAVEHG 216 Query: 245 I 245 + Sbjct: 217 V 217 >gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] Length = 377 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K V + LT RE L ++EG + +I +L +S +TV +Y++S+M K K R Sbjct: 304 KGEKVEKNTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNR 363 Query: 234 SGAIAYAVR 242 + +A A R Sbjct: 364 TQVVASAFR 372 >gi|332672210|ref|YP_004455218.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332341248|gb|AEE47831.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 77 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++E T +EIA L ++RNTV + + S+ RK TR+ A+A+AV + I Sbjct: 17 LTRRERVVLGELAEDVTLEEIATRLFVTRNTVKSQVRSVYRKIGVSTRAEAVAWAVAHGI 76 >gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 214 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N K +D H +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 194 DDRTQAVVYAFRHHLV 209 >gi|300784158|ref|YP_003764449.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793672|gb|ADJ44047.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 236 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE + L ++ G+ +IA+ILGI TV Y+ I KT + R G + A+R Sbjct: 162 EAELSPREEQVLRLVAAGERDVDIALILGIGVRTVRGYLDRIRDKTGERRRPGLVKEAIR 221 Query: 243 NNIV 246 ++ Sbjct: 222 RGLI 225 >gi|296102946|ref|YP_003613092.1| sgAB operon transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057405|gb|ADF62143.1| sgAB operon transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 216 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 214 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N F+ +LT RE+E L I+ GK++ E+A L I TV ++ ++++K Sbjct: 138 NRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTNVLQKLGV 197 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ A YA ++ IV Sbjct: 198 EDRTQAAIYAFKHGIV 213 >gi|148658579|ref|YP_001278784.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570689|gb|ABQ92834.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 221 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE L + EG T+ EIAV LG++ TV ++ SI+RK +R A+ +A R+ I Sbjct: 146 LSERESAVLRLMVEGATNREIAVELGLAVKTVEAHVHSILRKLRQPSRRAALVWARRHRI 205 >gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL F2-208] Length = 127 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 64 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 122 >gi|240144636|ref|ZP_04743237.1| transcriptional regulator, LuxR family [Roseburia intestinalis L1-82] gi|257203352|gb|EEV01637.1| transcriptional regulator, LuxR family [Roseburia intestinalis L1-82] Length = 261 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 H +FEL+ RE E LT + G T+ +IA +GIS +TV ++ I K TR+ Sbjct: 191 AHLAAEFELSEREKEALTCMDGGMTNAQIAENMGISLSTVKKHVYHIFEKVGVDTRA 247 >gi|218549230|ref|YP_002383021.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii ATCC 35469] gi|218356771|emb|CAQ89399.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia fergusonii ATCC 35469] gi|324113838|gb|EGC07812.1| luxR family protein regulatory protein [Escherichia fergusonii B253] gi|325497648|gb|EGC95507.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii ECD227] Length = 216 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 VLRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K + K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKISVKNRTQAVSWANDN 213 >gi|119898377|ref|YP_933590.1| putative transcriptional activator protein [Azoarcus sp. BH72] gi|119670790|emb|CAL94703.1| putative transcriptional activator protein [Azoarcus sp. BH72] Length = 251 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE++ L + +G T+ +I +L IS TV N++ I+RK R+ A+A V + Sbjct: 183 LSGRELQVLGCMRDGLTNQQIGEVLEISALTVKNHVQRILRKLRAANRAQAVANGVAAGL 242 Query: 246 V 246 + Sbjct: 243 I 243 >gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 208 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +++GK++ EIA + I+ TV +++ ++RK TR+ A+A+A + + Sbjct: 133 LTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLRKLGVGTRAQAVAFAYESGL 192 Query: 246 V 246 + Sbjct: 193 I 193 >gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42] gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168] gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642] gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY] gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5] gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName: Full=Protease production enhancer protein gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis] gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis] gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis] gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis subsp. subtilis str. 168] gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens FZB42] gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42] gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis] gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5] gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens LL3] Length = 229 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223 >gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] Length = 90 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+GRE++ L +S G T+ EIA L IS+ TV+N+I++I+ KT T R + + ++ Sbjct: 12 LSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVELVRWGLQ 68 >gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 226 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%) Query: 167 AYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AY + K+ ++VH LT RE E L W+++G +++EIA L ++ TV ++ SI Sbjct: 150 AYSDSCLKACHEVH------LTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIF 203 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K +R+ AI A++ +V Sbjct: 204 EKLKVTSRTQAIVAALKLGLV 224 >gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150] gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150] Length = 214 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N K +D H +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 194 DDRTQAVVYAFRHHLV 209 >gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4] gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4] Length = 214 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I G+++ EIA L I TV ++++I++K A + R+ YA R+ Sbjct: 152 ELTPRELEVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHRHG 211 Query: 245 IV 246 +V Sbjct: 212 LV 213 >gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 214 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N K +D H +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ YA R+++V Sbjct: 194 DDRTQAVVYAFRHHLV 209 >gi|119717886|ref|YP_924851.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119538547|gb|ABL83164.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 215 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G+D LT RE + L I G +++E+A L +S NTV + I S+ RK +R+ A+A Sbjct: 136 QLGRDVNLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVA 195 Query: 239 YAV 241 + V Sbjct: 196 WGV 198 >gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 229 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKN 223 >gi|237730973|ref|ZP_04561454.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2] gi|226906512|gb|EEH92430.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2] Length = 216 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136] Length = 220 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D+ L+ RE E L + +G EIA L +S +TV+ Y+ I K TR+GA+A A++ Sbjct: 157 DYGLSAREKEILDLMVKGLIKKEIADRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALK 216 Query: 243 NNIV 246 ++ Sbjct: 217 ERLI 220 >gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] Length = 356 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L +++G T+ EIA L IS NTV ++ SI K TRS A+A Sbjct: 297 LTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRSAAVA 349 >gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 229 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAVVVAIKN 223 >gi|226947735|ref|YP_002802826.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] gi|226840805|gb|ACO83471.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] Length = 210 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 RE++ + ISEG ++ EI+ L IS TV NYI+SI+ KT + R+ Y ++ Sbjct: 151 REIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIYHLK 204 >gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 234 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 170 KLTPREQECLKWTARGKSTWEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIATQLG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510] gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510] Length = 229 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I++G T ++IA LG+SR TV +YI +I RK +RS A+ A+ + Sbjct: 165 LTPRETDILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKL 224 Query: 246 V 246 + Sbjct: 225 I 225 >gi|160899701|ref|YP_001565283.1| LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365285|gb|ABX36898.1| transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 180 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H ELTGRE E + EG TS EI L IS TV Y A +MRK T Sbjct: 110 FEDLSAHRPVKAELTGREREVAARLLEGLTSKEIGRALAISHRTVEIYRARLMRKYGAST 169 >gi|31790492|emb|CAD56670.1| putative regulatory protein [Citrobacter sp. Fec2] Length = 216 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 157 DRLWEIGLLA-AYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 DRL +GLL ++ ++ + H LT RE ECL EG T+ EIA + S Sbjct: 147 DRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLTRRERECLALCGEGLTAKEIAYRIDRS 206 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAV 241 TV ++++ RK + R AIA A Sbjct: 207 VPTVVFHLSAATRKLGARNRFQAIARAA 234 >gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21193] Length = 209 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 237 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L ++ G+ + EIA L IS NTV N+I +I+ K +R A YAVR + Sbjct: 173 LTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMYAVRKRL 232 Query: 246 V 246 + Sbjct: 233 I 233 >gi|239943901|ref|ZP_04695838.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 260 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + + L+ REVE + I+ G ++ +IA IS TV N+I I K + TRS AIA+ Sbjct: 190 QQYGLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIAH 247 >gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] Length = 249 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 188 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 247 Query: 245 IV 246 +V Sbjct: 248 LV 249 >gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 211 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G ++ EIA L +S TV Y++ ++ K + R A+ YA R+ + Sbjct: 150 LTPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRDRVQAVVYAYRHGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208] Length = 229 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223 >gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 221 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L I+EG + EIA +L IS TV + A+++ K K R YA+R Sbjct: 156 DRLLTPREEEILKLIAEGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIR 215 Query: 243 NNIV 246 ++ Sbjct: 216 VGLI 219 >gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 222 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ FE LT RE+E L +++G + EIA L IS NTV ++++I K R+ A+ Sbjct: 154 GEPFEALTSREIEVLAMLADGLGNKEIARHLDISDNTVKFHLSAIFGKLGATNRTEAVML 213 Query: 240 AVRNNIV 246 +R+ + Sbjct: 214 GMRHGFI 220 >gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580] gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580] gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis] gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis] gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis] gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] Length = 229 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223 >gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 200 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 33/68 (48%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + W LT RE + L + EGK++ EIA +L +S TV NY+A +K R A Sbjct: 131 ETAWSAPVVLTARERDILRLVEEGKSNKEIARLLNLSPGTVRNYLAEATQKLGAANRIEA 190 Query: 237 IAYAVRNN 244 A N Sbjct: 191 FQIARENG 198 >gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 243 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ F+ T +E E + W+ EGKT+ EI IL +S TV ++ ++ K R+ A+A Sbjct: 178 GEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKV 237 Query: 241 VRNNIV 246 R ++ Sbjct: 238 SRLGLI 243 >gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 246 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE + L+W + G+T +EIA ILG+S TV ++ S K + + + A+R Sbjct: 184 LSARERDVLSWAAMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVEALRKR 242 >gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 74 Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E + I++G ++ EI+ L IS TV YI IM K ++R AY +N Sbjct: 10 ELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAAYYFQN 68 >gi|31790500|emb|CAD56676.1| putative regularory protein [Enterobacter sakazakii] Length = 216 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|329961768|ref|ZP_08299799.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] gi|328531509|gb|EGF58349.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] Length = 186 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q + + H G + EL+ RE+E L I++G + EIA L IS TV ++ +I K Sbjct: 105 QLHQYGHQHGHPG-EHELSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKL 163 Query: 229 ATKTRSGAIAYAVRNNIV 246 K+ SG YAV + V Sbjct: 164 GIKSVSGLTIYAVMHGYV 181 >gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei F0415] gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei F0415] Length = 213 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K +D H +LT RE + L +++G + IA L IS TV ++++I+ K + Sbjct: 135 IKYHDQHPDLHDDLTARERDVLALLAKGYDNQTIADELFISLKTVKTHVSNILAKLNVED 194 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA ++N+V Sbjct: 195 RTQAVVYAFQHNLV 208 >gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 511 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+ L +++G ++ E A +L +S TV +Y++S+M++ + R+ A A+R Sbjct: 449 QLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVSSLMKRLHARNRTEAAVKAMRLG 508 Query: 245 IV 246 ++ Sbjct: 509 LI 510 >gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] Length = 74 Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQAVIELIR 68 >gi|84684208|ref|ZP_01012110.1| two-component response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84667961|gb|EAQ14429.1| two-component response regulator [Rhodobacterales bacterium HTCC2654] Length = 215 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE + L IS G + E+A LG++ +TV YI +I RK +R+ A +A R Sbjct: 147 DGKLTDRETDVLALISRGLRNAEVARELGLAESTVAGYIKTIYRKLGISSRAEAAWHATR 206 >gi|330943805|gb|EGH46060.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] Length = 220 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT R++E L I GK++ EIA LG+S T+ + A +M++ +G + + VR Sbjct: 154 FRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFFVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 211 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVK 207 >gi|126653126|ref|ZP_01725255.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905] gi|126590131|gb|EAZ84256.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905] Length = 243 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 FE+T RE E L ++S+G + EIA L +S NT+ ++ ++ RK R+ +A Sbjct: 180 FEMTAREREVLNFVSKGLKNVEIAQQLIVSENTIKKHLQNLYRKFQVTNRTQLLA 234 >gi|78484550|ref|YP_390475.1| LuxR family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78362836|gb|ABB40801.1| transcriptional regulator, LuxR family [Thiomicrospira crunogena XCL-2] Length = 205 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE+E + WI +GK++ EIA + IS TV ++ S++ K K R Sbjct: 143 LSAREIETMEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDR 190 >gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 221 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L+ ++EG + IA L IS +TV +I SI K +R+ A+ VR + Sbjct: 159 LTPREVEVLSMLAEGLGNKTIARRLQISEHTVKFHIGSIFGKLEATSRTEAVTLGVRRGL 218 Query: 246 V 246 + Sbjct: 219 I 219 >gi|317476127|ref|ZP_07935379.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316907765|gb|EFV29467.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 255 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE+E L + +G S EIA L IS NTVN++ +I++K + AI +A R Sbjct: 192 LTNRELEVLRLMKQGLLSKEIADTLQISINTVNSHRQNILQKLKANNSAEAINFAQR 248 >gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG +S EIA +L IS TV+ + A+++ K + R YA+R + Sbjct: 159 LTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGL 218 Query: 246 V 246 + Sbjct: 219 I 219 >gi|256850848|ref|ZP_05556237.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260661059|ref|ZP_05861973.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|282934481|ref|ZP_06339736.1| two-component response regulator [Lactobacillus jensenii 208-1] gi|297205722|ref|ZP_06923117.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii JV-V16] gi|256615910|gb|EEU21098.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260547996|gb|EEX23972.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|281301428|gb|EFA93717.1| two-component response regulator [Lactobacillus jensenii 208-1] gi|297148848|gb|EFH29146.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii JV-V16] Length = 201 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE++ L + + T+ E+A L +S TV NYI+SI+ KT T +R A+ A Sbjct: 138 DNPLTNREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSILSKTGTSSRLEALNLA 195 >gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 214 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++ G EIA LGIS TV N+I SI RK T A+A A + Sbjct: 154 LTEREAEILQAVARGYKRHEIAQHLGISAGTVGNHITSIYRKLEVSTNMEAVARASKKG 212 >gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 164 LTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 221 >gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L I+ G + EIA L IS TV ++I I K + R+ AI YA Sbjct: 154 KLTARELEVLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQG 213 Query: 245 IV 246 +V Sbjct: 214 VV 215 >gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + G ++ EIA L +S +TV ++++S++ K + R+ A+ +A + Sbjct: 155 ELTERESETLRLLGRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESG 214 Query: 245 IV 246 ++ Sbjct: 215 LI 216 >gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 207 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ +IA L +S TV +++ I K R+ A YA+ N Sbjct: 146 KLSKREMEVLKEMVKGKTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIENK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct] Length = 238 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241 LT RE E L W + GKT EI +IL I + TV +I + +RK ++ K + AYA+ Sbjct: 176 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAI 233 >gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9211] gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9211] Length = 90 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 MF + G+ L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 1 MFSGDFANSGQ-MSLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSK 59 Query: 232 TRSGAIAYAV 241 R + +A+ Sbjct: 60 NRVALLNWAM 69 >gi|116621654|ref|YP_823810.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224816|gb|ABJ83525.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE + L I+ GK++ E A LGIS T +++ + I+ K + + YA+R Sbjct: 164 FALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRYAIRA 223 Query: 244 NIV 246 ++ Sbjct: 224 GLI 226 >gi|330808400|ref|YP_004352862.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376508|gb|AEA67858.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 219 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT R++E L I GK++ EIA L +S TV + A IM++ +G + +A Sbjct: 150 ARAHNLTARQLEILRLIVRGKSTREIANGLNLSIKTVETHRAQIMKRLQIHDVAGLVLFA 209 Query: 241 VRNNIV 246 VR I+ Sbjct: 210 VREQII 215 >gi|257482088|ref|ZP_05636129.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011441|gb|EGH91497.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 209 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ G LT R+ E L ++ GKT+ EIA LGIS TV +++S+++ TRS A Sbjct: 138 DLDSGAISHLTVRQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSAA 197 Query: 237 IA 238 A Sbjct: 198 AA 199 >gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] Length = 64 Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 3 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 62 Query: 245 IV 246 +V Sbjct: 63 LV 64 >gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus A9781] gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus] gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus A9781] gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus ST398] gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family [Staphylococcus aureus 04-02981] gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03] gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00] gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21172] Length = 209 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|327404698|ref|YP_004345536.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320206|gb|AEA44698.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 217 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 171 NMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 ++ K + KD E L+ RE+E + I+ ++++IA L IS+ TV + +I +K Sbjct: 137 SLMKRQKKEFRKDLEVAQLSNREIEIIRLIALEYSNEKIAEELFISKRTVETHRKNINQK 196 Query: 228 TATKTRSGAIAYAVRNNIV 246 T KT G I +A+RN +V Sbjct: 197 TNIKTVVGLIKFAIRNELV 215 >gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 226 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I G+++ EIA LG+S TV +++ ++ K +R+ A +A++ + Sbjct: 163 LTARETDILRHIGRGESNKEIAAALGLSELTVKTHVSRLLSKLGLASRTQAALFALKEGL 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C] gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A + Sbjct: 152 GGRPGSLTDREREVLGLIADGRSNREIARTLVLSEKTVKTHVSNILMKLDLSDRTQAALW 211 Query: 240 AVRNNI 245 AVR+ I Sbjct: 212 AVRHGI 217 >gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1] gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 496 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A Sbjct: 427 DLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWA 482 >gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp. subtilis str. 168] gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp. subtilis str. 168] gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp. subtilis str. SMY] gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5] gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis] gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp. subtilis str. 168] gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto BEST195] gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5] Length = 199 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK + EIA L I TV NYI+ I+ K K R AI Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189 >gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum] gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 247 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%) Query: 164 LLAAYQANMFKSYDVHWGKDFE--------LTGREVECLTWISEGKTSDEIAVILGISRN 215 L+AAY ++ ++ G D +T RE E + W + GKT+ EIA ILG S Sbjct: 159 LMAAYAHSLLRA---QIGNDASRKIQALPMITTREREIIHWCAAGKTAIEIATILGRSHR 215 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ N I +I RK IA + R I+ Sbjct: 216 TIQNVILNIQRKLNVVNTPQMIAESFRLRII 246 >gi|332709752|ref|ZP_08429711.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351579|gb|EGJ31160.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 89 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 40/57 (70%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT+T R G + +A++ Sbjct: 12 LSYRELQIIEHVAAGLTNLEIAQELAISKRTVDNHISNILTKTSTDNRVGLVRWALK 68 >gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 211 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVK 207 >gi|255036722|ref|YP_003087343.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254949478|gb|ACT94178.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 219 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I +G ++ EI L IS TV + ++ KT TK+ + A+A+A +N + Sbjct: 158 LSSREKEVLQLICDGLSTTEIGDKLFISVRTVEGHRLRVLEKTGTKSTAAAVAFAYKNQL 217 Query: 246 V 246 + Sbjct: 218 L 218 >gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L ++ G T+ EIA L IS TV ++ I+RK R+ A +AVR Sbjct: 147 EVPLTQRESEVLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVR 206 Query: 243 NNIV 246 +V Sbjct: 207 KGLV 210 >gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 228 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ GK++ EIA IL I+ TV ++ +I++K + R+ A A++ + Sbjct: 159 LTKREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|289641792|ref|ZP_06473950.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508436|gb|EFD29377.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 402 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 41/81 (50%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R G+ + + +D W D LT RE++ L ++ G T+ IA L IS TV Sbjct: 312 RFGAYGMNHGFAQPVRPFHDTPWPADSRLTRREIDVLRLMAAGNTNARIADRLIISEGTV 371 Query: 218 NNYIASIMRKTATKTRSGAIA 238 +++ I+RK +R+ A++ Sbjct: 372 KSHVKHILRKLNAASRTEAVS 392 >gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E L W+S+G ++ EIA+ + +S TV N+++ ++RK R+ A A Sbjct: 151 DLTPREREVLYWLSQGFSNAEIALKMVLSEKTVKNHVSHVLRKLELNDRTQAAVLA 206 >gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC] gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC] gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 264 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++ G TS EI L IS TVN +I +I RK +TR+ A+ +A Sbjct: 204 LSQREKEVLRMVASGYTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAVRFA 258 >gi|119715573|ref|YP_922538.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119536234|gb|ABL80851.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 188 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G LT REVE L I++G ++ EIA L +S N+V YI S K +R+ A+A+ Sbjct: 113 GASVALTAREVEVLALITQGMSNPEIAEHLYLSINSVKTYIRSAYAKIGVTSRARAVAW 171 >gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 211 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L + G+T+ +IA +LGIS TV ++ ++ K R+ A +AVR + Sbjct: 151 LTQREGEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKIGVADRTQAAIWAVRAGL 210 >gi|229489178|ref|ZP_04383044.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] gi|229324682|gb|EEN90437.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] Length = 484 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E LT++ T+DEIA LGI+ TV +I SI RK R A+ A Sbjct: 407 LTEREKEILTFLRTTMTADEIAAHLGIAYPTVKTHIRSIYRKLGVTKRRAAVQAA 461 >gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 225 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N + +V W LT RE E L +++GK++ I L IS TV N++++I++K Sbjct: 148 NKERKREVRWPLHL-LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNV 206 Query: 231 KTRSGAIAYAVRN 243 R+ A+ A++N Sbjct: 207 NDRTQAVVVAIKN 219 >gi|303242530|ref|ZP_07329009.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302589948|gb|EFL59717.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 214 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L RE++ + + +GK++++IA L ++ +V N ++S++RK K R +AVRN Sbjct: 153 KLNEREIKVIQLVVDGKSNNQIAEELFLTEGSVRNIVSSLLRKLDLKDRVQLAVFAVRNK 212 Query: 245 IV 246 +V Sbjct: 213 LV 214 >gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 235 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G+++ EIA L ++ TV +++S+ RK R+ A YAV + + Sbjct: 147 LTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAALYAVTHGM 206 >gi|169825087|ref|YP_001692698.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|167831892|dbj|BAG08808.1| two-component response regulator [Finegoldia magna ATCC 29328] Length = 208 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 K ELT RE+E L ++ G +D+IA LGIS NTV +I ++ KT +R+ Sbjct: 139 AKSTELTPREIEVLRLLTTGAGNDQIAEELGISLNTVKTHIKHMLDKTEFTSRT 192 >gi|257485988|ref|ZP_05640029.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624166|ref|ZP_06457120.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648606|ref|ZP_06479949.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|298486059|ref|ZP_07004129.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159407|gb|EFI00458.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320327444|gb|EFW83457.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str. race 4] gi|330869356|gb|EGH04065.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877322|gb|EGH11471.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str. race 4] gi|330988652|gb|EGH86755.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010302|gb|EGH90358.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 89 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G E+T RE E L + +G T+ EIA L IS TV ++++S++RK+ KTR +A Sbjct: 5 GSSMEVTMREQEVLGLLLQGCTNKEIARQLRISDYTVRDHVSSLLRKSRVKTRVELMARC 64 Query: 241 V 241 V Sbjct: 65 V 65 >gi|271969982|ref|YP_003344178.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513157|gb|ACZ91435.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E + I+ G+T+ EIA L IS +TV Y++ IM K ++R +A+A Sbjct: 152 LTARETEIVQAIARGRTNQEIADELFISLSTVKGYVSGIMAKLGVRSRVKIVAWA 206 >gi|291298613|ref|YP_003509891.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567833|gb|ADD40798.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G LT RE++ L +SEGK++ EI L +S +T+ + + RK + R+ A+A Sbjct: 139 QRGGPVGLTEREMQVLRGMSEGKSNAEIGRDLFVSEDTIKTHARRLFRKLGARDRAHAVA 198 Query: 239 YAVRNNIV 246 R IV Sbjct: 199 EGFRGGIV 206 >gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 211 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVK 207 >gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41] gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 377 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHW 180 P D + LTFD ++G K ++L + + + +GL + K V Sbjct: 260 PIIQQDQLFGWLTFD----QLGEEFDCTKSELLLLEEVGKRLGLFLSR-----KGEKVEK 310 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE L ++EG + +I +L +S +TV +Y++S+M K K R+ +A A Sbjct: 311 CTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASA 370 Query: 241 VR 242 R Sbjct: 371 FR 372 >gi|325678873|ref|ZP_08158471.1| transcriptional regulator, LuxR family [Ruminococcus albus 8] gi|324109377|gb|EGC03595.1| transcriptional regulator, LuxR family [Ruminococcus albus 8] Length = 209 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 34/50 (68%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 E T RE+E L ++ G T+ ++A LGIS NTV +++ S++ KT ++R+ Sbjct: 144 EFTERELEILRVVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRT 193 >gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus nasoniae] Length = 243 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W S GKT EI IL IS TV +I ++++K AI+ +V+ N++ Sbjct: 175 RESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAKHAISLSVKLNLI 232 >gi|167765400|ref|ZP_02437513.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC 43183] gi|167697028|gb|EDS13607.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC 43183] Length = 256 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I +G S EIA LG+S +TVN + +++RK + AI + Sbjct: 194 ELTNREIEILQLIKQGLLSKEIAYTLGVSIHTVNIHRQNLLRKLGVQNSIEAINIGSKTG 253 Query: 245 IV 246 ++ Sbjct: 254 LI 255 >gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580] gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580] Length = 199 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK + EIA L I TV NYI+ I+ K K R AI Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189 >gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 508 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ GK+++ IA LG++ TV NYI+++ K ++R+ A+ +A + Sbjct: 447 LSKRERQVLERLARGKSNEAIAAELGLATQTVRNYISAVYDKLGVRSRAEAVVWARERGV 506 Query: 246 V 246 + Sbjct: 507 I 507 >gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 199 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK + EIA L I TV NYI+ I+ K K R AI Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189 >gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603] gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603] Length = 209 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTDREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 230 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT REVE L ++ G ++ EIA +S TV ++ ++ KT ++ R A+ +A + Sbjct: 159 ELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIG 218 Query: 245 IV 246 +V Sbjct: 219 LV 220 >gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 226 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT REVE L ++ G ++ EIA +S TV ++ ++ KT ++ R A+ +A + Sbjct: 155 ELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIG 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|319948180|ref|ZP_08022340.1| putative two-component system response regulator [Dietzia cinnamea P4] gi|319438164|gb|EFV93124.1| putative two-component system response regulator [Dietzia cinnamea P4] Length = 217 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + I+ G+++ EIA L IS TV ++ +++K + + R+ + YA N + Sbjct: 157 LTPREREMVEQIATGRSNAEIATALFISEETVKTHVRRVLQKLSLRDRAQVVVYAYENGV 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 241 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 34/53 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE ECL W ++GK++ +I+ IL +S+ TV ++ + K +T + A+A Sbjct: 179 LTPREFECLKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVA 231 >gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 236 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W + GKT+ +IA IL +S TV +I+S +K + A+ A + Sbjct: 175 KLTPRETEILKWSAMGKTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAG 234 Query: 245 I 245 + Sbjct: 235 L 235 >gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] Length = 209 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|167763457|ref|ZP_02435584.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC 43183] gi|167698751|gb|EDS15330.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC 43183] Length = 217 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +A M +S + G+ ELT RE++ L ISEGK + EIA L +S NTV+ + +M K Sbjct: 138 RAQMRRSDE---GRREELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKL 194 Query: 229 ATKTRSGAIAYAVRNNIV 246 + + I A+ I+ Sbjct: 195 DARNVADLIMTAISKGII 212 >gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2] gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2] Length = 199 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK + EIA L I TV NYI+ I+ K K R AI Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189 >gi|303238514|ref|ZP_07325048.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593912|gb|EFL63626.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 215 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E + + +GK + +IA L IS TV N I+ I++K + R YAV+N+I Sbjct: 155 LTPREIEIINLVVDGKDNRDIANSLFISEGTVRNTISLILKKLNLRDRIQLAVYAVKNDI 214 >gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I+ G T+ EIA L +S TV ++ A I RK RS + YA+ Sbjct: 151 ELTARELEVLRLIARGLTNREIAERLFLSVRTVESHRARIQRKLGRSRRSDLVDYALERG 210 Query: 245 IV 246 +V Sbjct: 211 LV 212 >gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 215 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT+I++G + EIA +L +S +T+ ++ SI K +R+ A A+R + Sbjct: 153 LTAREEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRRGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G T+ E+A L IS TV + IMR+ +R+ + YA +N + Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|261339343|ref|ZP_05967201.1| putative csgAB operon transcriptional regulatory protein [Enterobacter cancerogenus ATCC 35316] gi|288318141|gb|EFC57079.1| putative csgAB operon transcriptional regulatory protein [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 211 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EGK++ IA L IS TV ++++I+ K R+ A+ YA ++N+ Sbjct: 148 LTAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDRTQAVVYAFQHNL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|171911323|ref|ZP_02926793.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 242 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE++ L + +G T + A +GI T + YI S+ K ++R GAIA AV+ Sbjct: 180 YGLTPRELQILELLVQGHTIKQAAGEMGIGYYTADEYIRSVYEKLQVRSRGGAIAKAVKE 239 Query: 244 NIV 246 +V Sbjct: 240 RLV 242 >gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] Length = 247 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E + W S GK+ EIA+ILGI TV +I + ++K AI + N+ Sbjct: 179 FTSRENEIIYWASVGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGIELNL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + I+EG ++ EIA L IS TV+ + A+I++K + R YA+R + Sbjct: 156 LTPREEEVVKLIAEGNSAKEIAETLVISVKTVDRHRANILQKLGMRDRLDLTRYAIRAGL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|213029272|ref|ZP_03343719.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 48 Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 29/47 (61%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 1 MKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYA 47 >gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917] gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917] Length = 92 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT K R + +A+ Sbjct: 12 IDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALLNWAM 69 >gi|332877914|ref|ZP_08445652.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684209|gb|EGJ57068.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 205 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 171 NMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 NM + Y + G L+ RE+E LT I G T+ EIA L IS TV ++ +IM K Sbjct: 123 NMPRPYMTNTSPGDPNGLSTREIEVLTLIVRGLTNKEIADRLCISTTTVISHRKNIMEKL 182 Query: 229 ATKTRSGAIAYAVRNNIV 246 ++ SG YAV N + Sbjct: 183 NVRSVSGLTIYAVMNGYI 200 >gi|302545866|ref|ZP_07298208.1| two-component system response regulator TcsR2 [Streptomyces hygroscopicus ATCC 53653] gi|302463484|gb|EFL26577.1| two-component system response regulator TcsR2 [Streptomyces himastatinicus ATCC 53653] Length = 208 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT RE+ L+ ++G + EIA L +S T+ NY+A+I RKT + R AI Sbjct: 145 EIPLTERELGVLSLAADGASIAEIARTLHLSNGTIRNYLAAITRKTGARNRVDAI 199 >gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 228 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N Y T D+++IR ++ + + D + A +A D++ LT Sbjct: 106 NGYLIKTSDISQIRAAILSIASGTAVFSPDAAGFSRAVVANEAPGQTPADLYG-----LT 160 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 RE LT + G+++ EIA LGIS TV +I SIM+K ++R Sbjct: 161 EREEAILTQLCRGQSNYEIARFLGISEGTVKVHITSIMKKANVRSR 206 >gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 214 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +H D E LT RE E L ++EG T+ E+A L +S TV + IM K K + Sbjct: 141 LHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMNKLKLKNLADL 200 Query: 237 IAYAVRNNIV 246 + YA+RN ++ Sbjct: 201 VKYAIRNGMI 210 >gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] Length = 123 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 55 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 114 Query: 240 AVR 242 A+R Sbjct: 115 ALR 117 >gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 217 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 177 DVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +V G D EL T REVE L ++ G ++ EIA L +S TV ++++++ K + R Sbjct: 144 EVTPGADAELARLTDREVEVLRALARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDR 203 Query: 234 SGAIAYAVRNNIV 246 A+A+A ++ +V Sbjct: 204 VQAVAHAYQHGLV 216 >gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 209 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GREV+ L +++G+T+ + A +LG++ TV ++ + K R+ A+A R+ + Sbjct: 148 LSGREVDVLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGL 207 Query: 246 V 246 + Sbjct: 208 L 208 >gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 231 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 37/59 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +ELT RE E L W+++G ++ E+A + +S TV N+++ +++K + R+ A A R Sbjct: 150 YELTPREKEILYWLAQGLSNSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWR 208 >gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 210 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G+++ E+A L +S TV ++++ I K TR+ A+A A+ +I Sbjct: 145 LTEREVEILGLLATGQSNRELAKRLFVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHI 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|187777587|ref|ZP_02994060.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC 15579] gi|187774515|gb|EDU38317.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC 15579] Length = 218 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 RE++ + ISEG ++ EI+ L IS TV NYI+SI+ KT + R+ Y ++ Sbjct: 159 REIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIYHLK 212 >gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 213 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG ++ I +L IS +TV +I +++ K + R+ A+A+A R+ + Sbjct: 152 LTEREMDVLRALAEGSSNGRIGKMLNISESTVKTHIGNVLAKLDLRDRTQAVAFAWRHGL 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649] gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649] Length = 217 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + EG ++DEIA L ISR TV ++ + K +R+GA+A A R + Sbjct: 156 LSEREREVLVLVGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSRTGAVATARRLGL 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|329954461|ref|ZP_08295552.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328527429|gb|EGF54426.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 217 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +A M +S + G+ ELT RE++ L ISEGK + EIA L +S NTV+ + +M K Sbjct: 138 RAQMKRSDE---GRREELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKL 194 Query: 229 ATKTRSGAIAYAVRNNIV 246 + + I A+ I+ Sbjct: 195 DARNVADLIMTAISKGII 212 >gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13] gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13] Length = 199 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D +G++ LT RE L +++GK + EIA L I TV NYI++I+ K K R A Sbjct: 129 DDFYGEENPLTEREKAVLELVADGKNTQEIADELRIKSGTVRNYISNILDKLEVKNRIEA 188 Query: 237 I 237 I Sbjct: 189 I 189 >gi|290957669|ref|YP_003488851.1| hypothetical protein SCAB_31981 [Streptomyces scabiei 87.22] gi|260647195|emb|CBG70298.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 163 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ +E E L IS+G+T+ E A +G+S +TV YI I K T R+G + A R+ Sbjct: 12 LSPQEREALLGISQGRTTAETACDMGVSNSTVKTYILRIGGKLGTSERAGMVDLAYRHG 70 >gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +T RE E L ++EG +S EIA +L IS TV + A++++K + R YA+R Sbjct: 158 DRAITEREEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIR 217 Query: 243 NNIV 246 ++ Sbjct: 218 AGLI 221 >gi|150018604|ref|YP_001310858.1| two component LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905069|gb|ABR35902.1| two component transcriptional regulator, LuxR family [Clostridium beijerinckii NCIMB 8052] Length = 220 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE+E +S+G T+ +IA L IS TV NYI++I KT K R+ Sbjct: 161 LTEREIEICQLLSDGYTNSQIAEFLYISEGTVKNYISTIYDKTEIKDRT 209 >gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I+EG+++ E+A +L IS TV + A I++K + I YAVR I Sbjct: 155 LSDREREVLQMIAEGRSNKEVANLLNISPTTVETHRAHILQKLDIHSVPELILYAVRKGI 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|304406485|ref|ZP_07388141.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344543|gb|EFM10381.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 31/58 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G DF LT RE+E T + K + EIA L I+ TV NYI+ I K R+ IA Sbjct: 151 GADFALTPREIEIATLLIAYKNNREIAEALFITEGTVKNYISVIYEKVGMNDRAKVIA 208 >gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L I+EG +S EIA L IS TV + A+++ K + R YA+R Sbjct: 159 DSVLTPREEEVLKLIAEGHSSKEIADTLFISIKTVQRHRANLLHKLGLRDRLELTRYAIR 218 Query: 243 NNIV 246 +V Sbjct: 219 AGLV 222 >gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681] gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681] Length = 75 Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ +R Sbjct: 11 FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIR 69 >gi|52842163|ref|YP_095962.1| transcriptional regulator LuxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|40644088|emb|CAE46907.1| putative transcriptional regulator [Legionella pneumophila] gi|52629274|gb|AAU28015.1| transcriptional regulator LuxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 223 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE EC+ + GK++ EI +L +S+ T+ +YI +I K + ++ + AV N Sbjct: 145 YGLTDREHECVFLLIRGKSAKEIGALLSLSKRTIESYIENIKNKMDCRNKAEILVKAVLN 204 >gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] Length = 244 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L WI+ GK++ IA I+G+SR+TV+ + + K R+ A V + Sbjct: 176 LSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|313674425|ref|YP_004052421.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312941123|gb|ADR20313.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 196 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Query: 157 DRLWEIGLLAAYQANMFKSYDV-HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGIS 213 +R E+ + A N F YD DF T RE+E + ++ GK+S EIA IL IS Sbjct: 110 ERSLEVAINVA--INKFYEYDFKEINTDFLSNFTSREIEIIKLLAAGKSSSEIAEILFIS 167 Query: 214 RNTVNNYIASIMRKTATKTRSGAI 237 TV+ + ++I++K+ K+ + I Sbjct: 168 PQTVSKHRSNILKKSGCKSSTELI 191 >gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 261 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT R+ E L W + GKT EIA IL +S++TV+ Y+ R+ AI A+R Sbjct: 199 KLTDRQSEVLKWAALGKTDWEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAIVLAMRYG 258 Query: 245 IV 246 ++ Sbjct: 259 LI 260 >gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELYITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|302526449|ref|ZP_07278791.1| predicted protein [Streptomyces sp. AA4] gi|302435344|gb|EFL07160.1| predicted protein [Streptomyces sp. AA4] Length = 279 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L + G+T+ +IA LG+ TV +Y+ + MRK KTR A+ A R N+ Sbjct: 218 LSPRELDVLEGAAAGQTNADIAEALGLGPETVKSYLRNAMRKLDAKTRLQAVNAARRANL 277 Query: 246 V 246 + Sbjct: 278 L 278 >gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 204 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L S+G T+ E+A L +S+ TV NY+++ ++K A + R+ A+ A Sbjct: 144 LTDREREVLRAASDGSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVA 198 >gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] Length = 97 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 38/56 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 19 LSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 74 >gi|329113956|ref|ZP_08242723.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001] gi|326696703|gb|EGE48377.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001] Length = 295 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ RE E L WIS GKTS +IA IL +S T++ +I I KT Sbjct: 232 LNISAREAEVLLWISRGKTSRDIADILLVSPRTIDKHIEQIYNKTG 277 >gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 75 Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ +R Sbjct: 11 FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIR 69 >gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLT 195 G ++ P L +R+ E GL + S D + ELT RE E L Sbjct: 138 GNAIIAPSATKRLIERMMEGGLTDQDSLTIPTSADTAPSRPAYTDPELDELTDREREVLI 197 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N++V Sbjct: 198 EIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFAYENHLV 248 >gi|295695280|ref|YP_003588518.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410882|gb|ADG05374.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 223 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++ G + E+A L IS TV N+ A++MRK T I Y RN + Sbjct: 159 LTEREREVLVFLARGYQNREVAKELNISVKTVENHKANMMRKLGVSTVRELIEYGRRNRL 218 Query: 246 V 246 + Sbjct: 219 L 219 >gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 229 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + I+EG ++ EIA L +S TV +I ++ KT K R+ A+ YA + Sbjct: 164 LTARECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYAKGL 223 Query: 246 V 246 V Sbjct: 224 V 224 >gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 217 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG+++ EIA L +S TV ++++ I KT + R+ A+ A + + Sbjct: 153 LTDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQAVGIAYESGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|319795660|ref|YP_004157300.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598123|gb|ADU39189.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 236 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 33/50 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT R+++ L W+ EGK + EIA + +S TV N++++I+ ++R+ Sbjct: 180 ELTPRQMQVLQWVLEGKANKEIAQLANLSEGTVKNHVSTILLLFGMRSRA 229 >gi|326776946|ref|ZP_08236211.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657279|gb|EGE42125.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 344 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + + L+ REVE + I+ G ++ +IA IS TV N+I I K + +RS AIA+ Sbjct: 274 QQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAH 331 >gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 824 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E LT +EG +EIA L +S TV ++A+I RK R+ A+ A + I Sbjct: 764 LTERELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANIYRKLEVGGRTAAVKKAGKLKI 823 Query: 246 V 246 + Sbjct: 824 I 824 >gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 312 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 29/50 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L WI+ GK + +I ILG++ TVN ++ I K + R Sbjct: 249 FGLTQRESEVLLWIARGKPNRDIGEILGLAARTVNKHLEQIYVKLGVENR 298 >gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme [Oceanobacillus iheyensis HTE831] Length = 230 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L +++GK++ +A L IS TV N++++I++K R+ A+ A+R Sbjct: 167 LTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNVNDRTQAVVSAIR 223 >gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2] gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2] Length = 198 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + LT RE + + I+EG+++ EIA L I+ TV NYI++I+ K R A Sbjct: 129 DLAYADENPLTDREKQVMELIAEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNRIEA 188 Query: 237 IA 238 I+ Sbjct: 189 IS 190 >gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++ EIA L +S +TV +++++++K + R A+ +A Sbjct: 156 LTGREAETLKLVARGMSNAEIAAELVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEAGA 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] Length = 248 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLT 195 G ++ P L +R+ E GL + S D + ELT RE E L Sbjct: 138 GNAIIAPSATKRLIERMMEGGLTDQDSLTIPASADTAPSRPAYTDPELDELTDREREVLI 197 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N++V Sbjct: 198 EIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFAYENHLV 248 >gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] Length = 226 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE +CL GKTS EI ++L +S T++ Y+ + RK R+ +A A + Sbjct: 165 LTPRERDCLRLAMLGKTSSEIGIVLSLSEYTISQYLTAAQRKLDASNRTHTVAMAAQ 221 >gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp. DK17] gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1] gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 212 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + + G ++ EIA L ++RNTV Y+ S M+K + R AIA A Sbjct: 152 LTRREYEVLRFAAMGNSNPEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARA 206 >gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 242 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ Y N +S + LT RE E L W + GKT+ EI++IL I+ TV ++ Sbjct: 158 LIGVYAHNRIRSLHRPKPQRRLLTSRECEILLWAAHGKTAWEISIILHIAERTVKFHLIE 217 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 +K R+ A+A A+ ++ Sbjct: 218 ASKKLNAVNRTAAVAKALAFGLI 240 >gi|330972050|gb|EGH72116.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 220 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + A +M++ +G + + VR Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-003] Length = 117 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 54 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 112 >gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 221 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A+ N F+ V ELT RE++ L +++GK++ +IA L I TV ++ +I Sbjct: 139 VASKMMNRFRQPKVEAPAHEELTEREMDVLRLLAQGKSNQDIADELIIGIKTVKFHVTNI 198 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 + K + R+ A YA +N + Sbjct: 199 LAKLGVEDRTQAAIYAYKNGL 219 >gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1] gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1] gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1] gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1] Length = 217 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 181 GKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G D LTG RE E ++ G ++ EIA L IS TV + A+IMRK A R+ Sbjct: 144 GVDTNLTGYNGLSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNRA 203 Query: 235 GAIAYAVRNNIV 246 I YA+ ++++ Sbjct: 204 DLIRYAIHHHLI 215 >gi|317404517|gb|EFV84926.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 83 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE L W + GKTS E A IL IS +TVN ++ + RK + R A+A A+R Sbjct: 16 VRLSPRESASLHWSAIGKTSWETARILDISESTVNFHLRNACRKLQVRGRRAAVATAIRR 75 Query: 244 NIV 246 ++ Sbjct: 76 GLL 78 >gi|260427555|ref|ZP_05781534.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260422047|gb|EEX15298.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 233 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTG++ L+ I EGK + +IA L I+ TV ++ +IMRK +R+ A+ A Sbjct: 163 LTGQQARILSLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVHSRTQAVLIA 217 >gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 224 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G T+ E+A L IS TV + IMR+ +R+ + YA +N + Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|182412194|ref|YP_001817260.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839408|gb|ACB73660.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 214 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 43/85 (50%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 IG A + +++ RE + L +++EG +S EIA LG+S TV N+ Sbjct: 120 IGPAVARAVRRMAGHPERIDSKLDISTRERDVLRFVAEGLSSKEIAQRLGLSVRTVENHR 179 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ASI R+T ++ + +A R +V Sbjct: 180 ASITRRTGLRSVAQLTLHAARLGLV 204 >gi|330953920|gb|EGH54180.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] Length = 220 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + A +M++ +G + + VR Sbjct: 154 YRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|302529844|ref|ZP_07282186.1| hypothetical protein SSMG_06226 [Streptomyces sp. AA4] gi|302438739|gb|EFL10555.1| hypothetical protein SSMG_06226 [Streptomyces sp. AA4] Length = 212 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REVE L +++G + EIA L S T+ N I++++ + + RS A+AYA+R I Sbjct: 152 LQSREVEILGLLADGLGTVEIAERLAYSERTIKNIISTLLVRFDLRNRSHAVAYALRTGI 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|28870687|ref|NP_793306.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213969014|ref|ZP_03397154.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301385424|ref|ZP_07233842.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060502|ref|ZP_07252043.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|28853935|gb|AAO57001.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213926313|gb|EEB59868.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331015804|gb|EGH95860.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 220 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S TV + + IM++ +G + + VR Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60] Length = 239 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + RE E L W S GKT EIA+ILGI TV +I ++++K AI V Sbjct: 174 FSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGV 229 >gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K+ E LT REVE L I+ G ++ EIA L +S TV ++ + K + R+ A+A+A Sbjct: 156 KELEGLTAREVEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFA 215 Query: 241 VRNNI 245 R I Sbjct: 216 YRAGI 220 >gi|258516863|ref|YP_003193085.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780568|gb|ACV64462.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 216 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +D+ LT RE+E ++ G +++ I++ LGIS TV NYI+ I K +R AI Sbjct: 149 QDYGLTQREIEIAGLMARGFSNELISITLGISLGTVKNYISVIYSKLEANSRQEAI 204 >gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + H + LT RE + I GKT+ EIA L +S TV N++ I++K + R+ Sbjct: 140 HSCHEEAEVPLTPRERDIARLIGHGKTNKEIANELYLSVGTVKNHLTQILQKLDLRDRTQ 199 Query: 236 AIAYAVRNNIV 246 +AV+N+I+ Sbjct: 200 LAIFAVKNDIL 210 >gi|300784159|ref|YP_003764450.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793673|gb|ADJ44048.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + H G L+ RE + L ++ G+ ++A IL IS TV +Y+ I KT + R+ Sbjct: 143 SEERHAGPKIVLSEREKQVLRLVAAGERDVDVAEILNISVRTVRSYLDRIRDKTGERRRA 202 Query: 235 GAIAYAVRNNIV 246 G + A+R ++ Sbjct: 203 GFVRVAIREGLL 214 >gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] Length = 239 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + RE E L W S GKT EIA+ILGI TV +I ++++K AI V Sbjct: 174 FSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGV 229 >gi|119964473|ref|YP_946300.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951332|gb|ABM10243.1| putative Transcriptional regulator, LuxR-family [Arthrobacter aurescens TC1] Length = 424 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 WG L RE+E L ++ G+ + IA LGIS NTV ++ ++ RK ++R+ AI Sbjct: 360 AEWG----LAARELEVLQLLAAGQRNRTIATDLGISENTVKFHLRNLFRKLDVRSRTEAI 415 Query: 238 AYA 240 A A Sbjct: 416 ALA 418 >gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 171 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L RE E L I++G T+ +I LG+S TV NY++SI+ K +R+ A Y ++ Sbjct: 111 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 168 >gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 220 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L + +G + EIA L ++ TV N++++++ K + R+ A YAVR+ Sbjct: 160 QLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLRDRTQAAIYAVRH 218 >gi|160881748|ref|YP_001560716.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430414|gb|ABX43977.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 232 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243 ELT RE E I+EG T+ +IA L IS TV NYI+SI K R+ A+A N Sbjct: 170 ELTKREHEICAMIAEGFTNSQIASFLYISEGTVKNYISSIYDKLQIHDRAALAVALTKTN 229 Query: 244 NIV 246 I+ Sbjct: 230 RII 232 >gi|66046528|ref|YP_236369.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63257235|gb|AAY38331.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] Length = 220 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + A +M++ +G + + VR Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli STEC_7v] Length = 148 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 80 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 139 Query: 240 AVR 242 A+R Sbjct: 140 ALR 142 >gi|311897942|dbj|BAJ30350.1| putative response regulator [Kitasatospora setae KM-6054] Length = 219 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G+ L+ RE+ L I+EG T E A L +S TV NY+++ + KT + R AI Sbjct: 151 VRAGQAGPLSRRELAVLGEIAEGSTVREAAAALSLSPGTVRNYVSAAIAKTRARNRCDAI 210 Query: 238 AYA 240 A Sbjct: 211 RIA 213 >gi|182436316|ref|YP_001824035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464832|dbj|BAG19352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 354 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + + L+ REVE + I+ G ++ +IA IS TV N+I I K + +RS AIA+ Sbjct: 284 QQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAH 341 >gi|149925601|ref|ZP_01913865.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825718|gb|EDM84926.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L +++G EIA ILG+S NT++ YI I +K A +R+ A+ A Sbjct: 172 LSEREQQVLEMVAKGFMQAEIADILGVSINTISTYIKRIYKKLAVNSRTSAVHRA 226 >gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 198 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ G T+ EIA L IS TV +I+SI+ K R+ A +AVR + Sbjct: 136 LTPRELDVLRALAHGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGL 195 Query: 246 V 246 V Sbjct: 196 V 196 >gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22] gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 213 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 7/95 (7%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G I+L+ + + LL+ +AN + G+ LT RE E L I++G+++ EIA L Sbjct: 124 GHILLQPEVAD-ALLSQEEANSGQ------GRGGSLTEREKEVLGLIADGRSNREIARAL 176 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S TV ++++I+ K R+ A +AVR+ + Sbjct: 177 VLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 211 >gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 216 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE + L I++GK++ EIA L IS TV +++ ++ K R+ A YAV Sbjct: 149 ELTNRERDVLFEIAKGKSNKEIASSLFISEKTVKTHVSHVLSKLELADRTQAALYAV 205 >gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli] gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli DH1] gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] Length = 148 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 80 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 139 Query: 240 AVR 242 A+R Sbjct: 140 ALR 142 >gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125] gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125] Length = 201 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L GKT+++IA +L ++ TV NYI++ ++K + R AI A Sbjct: 141 LTEREQEVLRLTKGGKTTEQIATVLYLTNGTVRNYISTAIQKLEVENRHQAIQKA 195 >gi|312889097|ref|ZP_07748656.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311298407|gb|EFQ75517.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 225 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L + T++EIA L IS TVN + +++ KT ++ +G + YA++NNI Sbjct: 162 ISAREEEILRLTCQQYTAEEIANKLFISVKTVNGHRNNLLIKTGSRNVTGLVIYAIKNNI 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|307700360|ref|ZP_07637400.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|307614571|gb|EFN93800.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 217 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G ++ PK ++ RL + AA KS+ + L+ RE++ + ++E Sbjct: 120 GELVFSPKCSQVVVARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALE 172 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +IA L IS TV ++ SIM K T R+G +A A R ++ Sbjct: 173 NKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 216 >gi|326771790|ref|ZP_08231075.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] gi|326637923|gb|EGE38824.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] Length = 203 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L ++G T E+A + +S T N+++ M KT TR+ A+ A + Sbjct: 138 DSPLTARETEVLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQ 197 Query: 243 NN 244 Sbjct: 198 KG 199 >gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14] gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14] Length = 209 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A] gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11] gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli H591] gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A] gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11] gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli H591] Length = 148 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 80 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 139 Query: 240 AVR 242 A+R Sbjct: 140 ALR 142 >gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 212 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+E L +++G ++ EIA L IS TV ++ I K R+ A+ A++ I Sbjct: 150 LSGREIEVLDLVAQGASNREIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGI 209 Query: 246 V 246 + Sbjct: 210 I 210 >gi|258543394|ref|YP_003188827.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634472|dbj|BAI00448.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01] gi|256637530|dbj|BAI03499.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-03] gi|256640582|dbj|BAI06544.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-07] gi|256643639|dbj|BAI09594.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-22] gi|256646694|dbj|BAI12642.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-26] gi|256649747|dbj|BAI15688.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-32] gi|256652735|dbj|BAI18669.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655791|dbj|BAI21718.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-12] Length = 295 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ RE E L WIS GKTS +IA IL +S T++ +I I KT Sbjct: 232 LNISAREAEVLLWISRGKTSRDIADILLVSPRTIDKHIEQIYNKTG 277 >gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 151 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +S+GK++ +I L +S +TV + + RK + R+ A+A+ R Sbjct: 89 QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 148 Query: 245 IV 246 +V Sbjct: 149 LV 150 >gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 209 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++GK++ EIA L +S TV ++++++ K + R+ A+ +A N + Sbjct: 149 LTPRELEVLLTVADGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208 >gi|307331693|ref|ZP_07610799.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882672|gb|EFN13752.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 302 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + G EL+ REV+ L ++ G T+ A LG+ TV +Y+ S MRK TR A+ Sbjct: 234 NGGGGVELSPREVDVLACVASGATNSTAAERLGLRPETVKSYLRSSMRKLGAHTRLHAVV 293 Query: 239 YAVRNNIV 246 A R ++ Sbjct: 294 EARRAGLL 301 >gi|304439372|ref|ZP_07399284.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372154|gb|EFM25748.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 208 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 173 FKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 K+ +V G K +LT RE++ L ++ G +DEIA LGIS NTV +I ++ KT Sbjct: 129 IKTPEVKLGMTKSTDLTPREIQVLRLLTTGVGNDEIAESLGISLNTVKTHIQHLLDKTGF 188 Query: 231 KTRS 234 +R+ Sbjct: 189 TSRT 192 >gi|291008395|ref|ZP_06566368.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 340 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++LT RE++ +T ++ G ++ EIA L +SR TV+ ++ I+ K A +R+ A A R Sbjct: 268 YDLTVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAALAARE 327 Query: 244 NI 245 + Sbjct: 328 GL 329 >gi|227875745|ref|ZP_03993873.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269976705|ref|ZP_06183681.1| two-component response regulator [Mobiluncus mulieris 28-1] gi|306819021|ref|ZP_07452738.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|227843687|gb|EEJ53868.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269935070|gb|EEZ91628.1| two-component response regulator [Mobiluncus mulieris 28-1] gi|304648214|gb|EFM45522.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] Length = 220 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G ++ PK ++ RL + AA KS+ + L+ RE++ + ++E Sbjct: 123 GELVFSPKCSQVVVARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALE 175 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +IA L IS TV ++ SIM K T R+G +A A R ++ Sbjct: 176 NKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 219 >gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain Length = 91 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 30 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 89 Query: 246 V 246 + Sbjct: 90 I 90 >gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 203 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L + GKT+ +IA +L IS TV +++SI+ K R+ A AV++ Sbjct: 141 DLTNREREVLRLLVAGKTNHQIADLLKISPATVRIHVSSILAKLGVNNRTEAAIIAVQHK 200 Query: 245 IV 246 ++ Sbjct: 201 LI 202 >gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] Length = 376 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE L ++EG + +IA +L +S +TV +Y++S+M K K R+ +A A R Sbjct: 315 LTERESMILGLLAEGYDNKKIAGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFR 371 >gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIAV L ++ TV ++ I+ K + R+ A +A + Sbjct: 154 ELTERETEVLALIAQGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|133757303|ref|YP_001096222.1| hypothetical protein pLEW279a_p23 [Corynebacterium sp. L2-79-05] gi|110084187|gb|ABG49341.1| hypothetical protein [Corynebacterium sp. L2-79-05] Length = 221 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 FE LT RE E L +S+G+T+ EIA L ++ TV ++++I+RKT + R A A+R Sbjct: 158 FERLTAREREILIRLSQGETNAEIAKALHLAPGTVKVHVSAILRKTEARNRVEAALIALR 217 Query: 243 NN 244 Sbjct: 218 AG 219 >gi|22299408|ref|NP_682655.1| transcriptional regulator [Thermosynechococcus elongatus BP-1] gi|22295591|dbj|BAC09417.1| transcriptional regulator [Thermosynechococcus elongatus BP-1] Length = 93 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 38/56 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE++ L ++ G T+ +IA L IS+ TV+N+I++I+ KT ++ R + +A+ Sbjct: 14 LSERELQVLELVAAGLTNQDIAAKLDISKRTVDNHISNILMKTKSENRVALVRWAL 69 >gi|325067020|ref|ZP_08125693.1| NarL family two-component response regulator [Actinomyces oris K20] Length = 199 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L ++G T E+A + +S T N+++ M KT TR+ A+ A + Sbjct: 134 DSPLTARETEVLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQ 193 Query: 243 NN 244 Sbjct: 194 KG 195 >gi|323705213|ref|ZP_08116789.1| transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535639|gb|EGB25414.1| transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] Length = 121 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+E L +I +G +++IA IL I +NTV N+I I +K K + Sbjct: 50 LTKREMEILFYIFKGYKNNQIANILHIKKNTVKNHIYHIYKKFNAKNK 97 >gi|302036405|ref|YP_003796727.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604469|emb|CBK40801.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 234 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L WI++G+ EIA L +S TV+ Y + ++ K +T + I YA+ + Sbjct: 174 LSDREIEVLQWIAQGRRLTEIAEQLNLSIKTVSTYRSRLLIKLGMRTTAELIRYALDQQL 233 Query: 246 V 246 V Sbjct: 234 V 234 >gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%) Query: 157 DRLWEIGLLAAYQA-------------NMFKSYDVHWGK--DFELTGREVECLTWISEGK 201 DR +E+ L AAYQ F + K D ELT RE E L + +G Sbjct: 107 DRFFEL-LEAAYQGEPALPPNLARKVLQEFAQPKIERKKRPDAELTDREREILELLVQGI 165 Query: 202 TSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TS+ EIA L +S +TV ++ +I+ K + R+ +AYA+++ ++ Sbjct: 166 TSNKEIAERLFLSESTVKYHLHNILNKLHLQNRAQVVAYALQHGLI 211 >gi|189461961|ref|ZP_03010746.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136] gi|189431355|gb|EDV00340.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136] Length = 195 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ +L+ RE+E LT I++G + EIA L IS TV ++ +I K K+ SG YAV Sbjct: 126 QEHDLSPREIEVLTLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLAIYAV 185 Query: 242 RNNIV 246 + V Sbjct: 186 MHGYV 190 >gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 93 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 37/56 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + ++ G T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 14 LSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69 >gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 214 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +VH K E LT +E+ L I+ G + EIA +GI+ TV Y+ +I K Sbjct: 137 YKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGV 196 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 197 NSRSEAVAVSIERKLI 212 >gi|329848370|ref|ZP_08263398.1| response regulator [Asticcacaulis biprosthecum C19] gi|328843433|gb|EGF93002.1| response regulator [Asticcacaulis biprosthecum C19] Length = 221 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I++G + E A ++GIS TV YI I RK + ++R A+ + + + Sbjct: 154 LSAREQQLLELIAQGLSRKEAARVMGISPYTVAEYIQGIYRKLSVRSRGAAVREGIHSGL 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1] Length = 251 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLT 195 G ++ P L +R+ E GL + S D + ELT RE E L Sbjct: 141 GNAIIAPSATKRLIERMMEGGLTDQDSLTIPASADTAPSRPAYTDPELDELTDREREVLI 200 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N++V Sbjct: 201 EIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFAYENHLV 251 >gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 211 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 31/130 (23%) Query: 148 FPKGRIIL---RDRLWEI--GLLAAYQANMFKSY----------DVHWGK---------- 182 FP+ R+I+ D EI L A A + KS VH G Sbjct: 80 FPRARVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASR 139 Query: 183 ------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + LT RE+E L I +G + +IA L IS TVN +I +I+ K R+ A Sbjct: 140 LAENIGEESLTSRELEVLHLIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHA 199 Query: 237 IAYAVRNNIV 246 + AVR ++ Sbjct: 200 VTIAVRRGLL 209 >gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 215 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE++ L I+ G + EIA L +S NTV NY+ +I+ + + + R+ A +A Sbjct: 152 QLTPRELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLRDRTQAALFA 207 >gi|302186676|ref|ZP_07263349.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 220 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + A +M++ +G + + VR Sbjct: 154 YRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|290454885|emb|CBI67623.1| sR protein [Pseudomonas fuscovaginae] Length = 237 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241 LT REVE L W + GKT E +IL I TV ++ + MRK ++ K + AYA+ Sbjct: 176 LTVREVETLKWSATGKTYTETGLILSIDERTVKFHLVNAMRKLHSSNKVEAAMKAYAL 233 >gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 37/56 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LTGRE E L +++G T+ EIA + + TV +++A+++ KT T+ R+ A+ A Sbjct: 156 KLTGREREVLRRMADGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAA 211 >gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 212 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 151 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125] gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125] Length = 212 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ + + EGK++ EIA L +S TV NYI+ + K + R+ YAV+ + Sbjct: 152 LTKRELAVVKLVGEGKSNQEIADALFLSVGTVKNYISQALDKLELRDRTQLAIYAVKQQL 211 >gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli TA280] gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863] gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli TA280] Length = 221 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 153 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 212 Query: 240 AVRNNI 245 A+R + Sbjct: 213 ALRMGV 218 >gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] Length = 214 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 150 QLTEREVEVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 245 I 245 + Sbjct: 210 V 210 >gi|91787753|ref|YP_548705.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696978|gb|ABE43807.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 270 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE + + W++ GKT+ EI IL IS TV N++ I +K R+ A++ R Sbjct: 209 LSERETQIMAWVAMGKTNSEIGTILNISGFTVKNHMQRIFQKLNVFNRTQAVSKVTR 265 >gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 242 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 178 KLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLG 237 Query: 245 IV 246 ++ Sbjct: 238 LI 239 >gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli 1357] Length = 147 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 79 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 138 Query: 240 AVR 242 A+R Sbjct: 139 ALR 141 >gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736] gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1044] gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1125] Length = 147 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 79 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 138 Query: 240 AVR 242 A+R Sbjct: 139 ALR 141 >gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 87 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 12 LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVALVRWALQ 68 >gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 210 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++GK++ EIA L I+ TV ++++I+ K R+ A+ YA +N Sbjct: 148 QLTEREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIYAFQNK 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|330964297|gb|EGH64557.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 220 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S TV + + IM++ +G + + VR Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|323345346|ref|ZP_08085569.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323093460|gb|EFZ36038.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 203 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE+E L+ I +G + EIA L IS TV + +IM K K+ S YAV + Sbjct: 138 LTGREIEVLSLIVQGFINKEIAGRLNISITTVITHRKNIMEKLGMKSVSALTIYAVMHGY 197 Query: 246 V 246 V Sbjct: 198 V 198 >gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 209 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|226365866|ref|YP_002783649.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244356|dbj|BAH54704.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 211 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LTGRE E LT + EG + EIA L I TV ++A++M KT R Sbjct: 153 LTGREREVLTLVGEGLGNQEIAARLHIGVTTVKTHVANLMEKTGCDNR 200 >gi|224552987|gb|ACN54744.1| PagR [Pantoea agglomerans] Length = 210 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K+ L+ RE + L W+S GKT E+++IL I+ TV ++ ++M+K A+ Sbjct: 144 KNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAV 199 >gi|94495818|ref|ZP_01302397.1| probable transcriptional regulator [Sphingomonas sp. SKA58] gi|94424510|gb|EAT09532.1| probable transcriptional regulator [Sphingomonas sp. SKA58] Length = 491 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L+ + G IA +G+SRNT+ N++A + K R+ AI +A Sbjct: 424 ELTRREKEVLSLLCGGGDDAAIAKEMGVSRNTLRNHVARVYAKIGVNRRAQAILWA 479 >gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 248 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] Length = 248 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|157146272|ref|YP_001453591.1| DNA-binding transcriptional regulator CsgD [Citrobacter koseri ATCC BAA-895] gi|157083477|gb|ABV13155.1| hypothetical protein CKO_02029 [Citrobacter koseri ATCC BAA-895] Length = 216 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] Length = 209 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] Length = 217 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+V+ LT++S+G +S EIA L +S +TV +I +I K +R+ A+ A + I Sbjct: 155 LTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKNIYAKLQVNSRTEALHEAAKLGI 214 Query: 246 V 246 + Sbjct: 215 L 215 >gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701] gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701] Length = 89 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 38/58 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + ++ G T+ EIA+ L IS+ TV+N++++I KT K R + +A+ N Sbjct: 14 LSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKTGAKNRVALLNWAMDN 71 >gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] Length = 248 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|283784837|ref|YP_003364702.1| CsgAB operon transcriptional regulator [Citrobacter rodentium ICC168] gi|282948291|emb|CBG87871.1| probable CsgAB operon transcriptional regulator [Citrobacter rodentium ICC168] Length = 216 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 7/111 (6%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 +T D R+ GL + ILR + LA+Y +Y + + LT RE E Sbjct: 110 VTEDEERVVYGL-------QGILRGECYFSQKLASYLITHSGNYRYNGTESALLTHREKE 162 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A N Sbjct: 163 ILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|28869442|ref|NP_792061.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852683|gb|AAO55756.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 87 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 21 DVQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIR 80 Query: 243 NNIV 246 ++ Sbjct: 81 QGVI 84 >gi|71279999|ref|YP_268149.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71145739|gb|AAZ26212.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 215 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V+ + +LT RE L+++++GKTS EIA IL IS TV + ++ K + + I Sbjct: 145 VNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLGIHSLAKLI 204 Query: 238 AYAVRNNIV 246 +YAV++ I+ Sbjct: 205 SYAVKHGII 213 >gi|330876658|gb|EGH10807.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 220 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S TV + + IM++ +G + + VR Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 236 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174 G+D R LT AR + M+ +L+D EI L LA+ N+F Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162 Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 223 RVAATIMYLEN 233 >gi|255533126|ref|YP_003093498.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255346110|gb|ACU05436.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 263 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA+Q K Y ++ +D L+ RE E L W++EG +S IA L IS +TV N+ S+ Sbjct: 184 AAHQTIYKKVYHLN-EEDKLLSKREKEVLLWMAEGLSSKLIADKLFISEHTVINHRRSMQ 242 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 KT T +++ ++N ++ Sbjct: 243 DKTNTPNAVALVSFCIKNGLI 263 >gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] Length = 221 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 153 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 212 Query: 240 AVRNNI 245 A+R + Sbjct: 213 ALRMGV 218 >gi|238898060|ref|YP_002923741.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465819|gb|ACQ67593.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 243 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 172 MFKSYDV--HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 ++K D+ H +D E+ + RE E L W S GKT +EIA+ILGI TV ++ ++++K Sbjct: 157 LYKEMDIKHHKREDKEMFSTRENEILYWSSVGKTYEEIAMILGIKLGTVKFHMGNVVKKL 216 Query: 229 ATKTRSGAIAYAVR 242 AI V Sbjct: 217 GVINGKHAIRLGVE 230 >gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+ I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ I Sbjct: 155 LTDREREVLSHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214 >gi|171912623|ref|ZP_02928093.1| response regulator receiver protein [Verrucomicrobium spinosum DSM 4136] Length = 257 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 29/51 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE E L WISEGKT+ + A IL IS TV ++ I K + R A Sbjct: 192 LTPREQEVLYWISEGKTNADTATILNISPGTVRVHLERIYPKLGVENRMSA 242 >gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 255 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 191 KLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLG 250 Query: 245 IV 246 ++ Sbjct: 251 LI 252 >gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA L I+ TV +I ++ KTA + R+ A+ YA R+ I Sbjct: 157 LTPREAEVLALVAGGLSNPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAVRYAYRHGI 216 Query: 246 V 246 Sbjct: 217 A 217 >gi|269217352|ref|ZP_06161206.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC 700122] gi|269129489|gb|EEZ60574.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC 700122] Length = 663 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 32/63 (50%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 FK G F L+ RE E L +I G +S IA L IS NTV ++ +I RKT Sbjct: 590 TFFKQKAEEIGDAFRLSPREREILGYIGRGHSSVYIAKTLVISENTVYTHVRNIYRKTGA 649 Query: 231 KTR 233 +R Sbjct: 650 DSR 652 >gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri] gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri] gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE ECL W SEGK++ +I+ ILG S TV ++ + K T R Sbjct: 185 LTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia enterocolitica W22703] Length = 236 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174 G+D R LT AR + M+ +L+D EI L LA+ N+F Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162 Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 223 RVAATIMYLEN 233 >gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] Length = 271 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT +E E L WIS+G + EI + IS +TV+ Y+ SI +K T + A+ Sbjct: 205 KKIPLTQKEEEILKWISKGLSKPEIGDKMNISSHTVSYYMRSIFKKMGTNNTVSTVIKAI 264 Query: 242 RNNIV 246 + ++ Sbjct: 265 KEELI 269 >gi|296130095|ref|YP_003637345.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296021910|gb|ADG75146.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 207 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++ L ++EG + EIA L S TV N + + + + RS A+AYA+R + Sbjct: 147 LAAREIDVLKLVAEGYDTAEIAQHLAYSERTVKNVLHDVTTRLQLRNRSHAVAYALREGL 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|150004589|ref|YP_001299333.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254883067|ref|ZP_05255777.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294776747|ref|ZP_06742211.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|319643586|ref|ZP_07998206.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149933013|gb|ABR39711.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254835860|gb|EET16169.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294449402|gb|EFG17938.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|317384755|gb|EFV65714.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 214 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L I++G + EIA L IS TV ++ +I K K+ SG YAV Sbjct: 146 EHELSVREIEVLILITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTVYAVM 205 Query: 243 NNIV 246 N + Sbjct: 206 NGYI 209 >gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 74 Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] Length = 248 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 217 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L+W+++G + EIA L IS TV ++ +++M K KTR + +A++ + Sbjct: 154 LSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLKTRPELVKFALKKGL 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 209 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 233 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A+ N F+ ELT RE+E L +++GK++ +IA L I TV ++ ++ Sbjct: 151 VASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNL 210 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 + K + R+ A YA +N + Sbjct: 211 LAKLGVEDRTQAAIYAYKNGL 231 >gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354] gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354] Length = 210 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201 Query: 240 AVRNNI 245 A+R + Sbjct: 202 ALRMGV 207 >gi|291002981|ref|ZP_06560954.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 213 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I EG T+ EI+ + ++ TV NY++ ++ K A + RS A A Sbjct: 146 ELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLA 201 >gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11] Length = 221 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+ I++GKT+ EIA L I+ TV ++ +I+ K + R+ A+ A++ + Sbjct: 160 LTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQAGL 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|149925649|ref|ZP_01913913.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter sp. MED105] gi|149825766|gb|EDM84974.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter sp. MED105] Length = 210 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q N F+S G LT ++ + + +S G+T EIA ILG+S +TVN +I + Sbjct: 115 QRNEFQSLIQMPGSPKPLTIKQAQVMEQVSLGRTGKEIAKILGMSPDTVNAHIKEAFGRL 174 Query: 229 ATKTRSGAIA-YAV 241 + R A++ Y+V Sbjct: 175 GVQNRGEAVSNYSV 188 >gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris AB-18-032] gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris AB-18-032] Length = 211 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E LT I++ T+ +IA G+S TV N++++I K R+ AI+ A Sbjct: 151 ELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVADRAQAISMA 206 >gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [polymorphum gilvum SL003B-26A1] gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [Polymorphum gilvum SL003B-26A1] Length = 230 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL WI+ GK++ EI+ ILGIS TV ++ ++ K A+ A+ + Sbjct: 168 LTRRERECLLWIAAGKSAWEISRILGISARTVYFHLDNVRAKMGVTNVYHAVVKAIMEGM 227 Query: 246 V 246 + Sbjct: 228 I 228 >gi|260881742|ref|ZP_05405135.2| DNA-binding response regulator VraR [Mitsuokella multacida DSM 20544] gi|260848301|gb|EEX68308.1| DNA-binding response regulator VraR [Mitsuokella multacida DSM 20544] Length = 223 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + D + LT RE+E L I + + +EIA LGI++ TVN +I +++ KT K Sbjct: 133 VIRGRDTFGAAEASLTERELEILQLICQSLSREEIAARLGIAKRTVNFHITNMLEKTGHK 192 Query: 232 TRSGAIAYAVRNNI 245 + G A + Sbjct: 193 SIVGLAVEAAEKGL 206 >gi|134100444|ref|YP_001106105.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005077|ref|ZP_06563050.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913067|emb|CAM03180.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE +CL + EG + +A LG+S TV ++ S++ K +R A ++A+R+++ Sbjct: 145 LTARERQCLELLVEGAQTRAMARGLGVSSTTVRTHVQSVLTKLGVHSRLEAASFALRHSL 204 Query: 246 V 246 + Sbjct: 205 L 205 >gi|94500129|ref|ZP_01306663.1| regulatory protein, LuxR [Oceanobacter sp. RED65] gi|94427702|gb|EAT12678.1| regulatory protein, LuxR [Oceanobacter sp. RED65] Length = 753 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 36/58 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT +E E L +++G ++ EIA + ++ T+ ++ +I RK + +RS A+AY R Sbjct: 689 ELTNKEKEVLMLLAQGLSNQEIADDMAVAATTIKWHLKNIYRKLSLDSRSAAVAYMHR 746 >gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9] gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9] Length = 158 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 90 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 149 Query: 240 AVRNNI 245 A+R + Sbjct: 150 ALRMGV 155 >gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 217 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT I++G ++ +IA L IS TV + ++M K KTR +AYA++ + Sbjct: 153 LSDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLMEKLQMKTRPELVAYALKKGL 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|104781277|ref|YP_607775.1| response regulator [Pseudomonas entomophila L48] gi|95110264|emb|CAK14971.1| putative response regulator, LuxR family [Pseudomonas entomophila L48] Length = 130 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT R+ E L + G S E+A LG+S TVNN++ +MR R+ A++ A+ Sbjct: 59 LTRRQQEILQLLHRGLASKEVAAELGLSLGTVNNHVTGLMRVLGVTNRTHAVSRAM 114 >gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114] Length = 230 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE ECL W SEGK++ +I+ ILG S TV ++ + K T R Sbjct: 183 LTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 230 >gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 220 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L++ Y + + ++ + G ++ELT RE L I++GK + EIA LGIS T+ + Sbjct: 135 LVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADGLGISIRTIETH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 A+IM+K K + A+ IV Sbjct: 195 RANIMKKLKVKNAVELVRIAIDEKIV 220 >gi|332974286|gb|EGK11218.1| hypothetical protein HMPREF9374_2036 [Desmospora sp. 8437] Length = 438 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ I IL IS +T Y +I+RK K R A+A R + Sbjct: 377 LTRREQELLQMIAYGYSTKHIGEILHISEHTAAEYAQTILRKLNAKNRPEAVAKGFRLGM 436 Query: 246 V 246 + Sbjct: 437 I 437 >gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4] gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus pseudofirmus OF4] Length = 74 Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQAVIELIR 68 >gi|255535518|ref|YP_003095889.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] gi|255341714|gb|ACU07827.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] Length = 218 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I EG + EIA L IS +TV ++ +IM+K ++ S + +A+ NN Sbjct: 156 ELTVREKEVLHHICEGLRTREIADELFISPHTVESHRRNIMQKLDVRSSSMLVKFAMNNN 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026] gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412] gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli TA143] gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory protein LuxR family [Escherichia coli UMN026] gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042] gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412] gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli TA143] Length = 210 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201 Query: 240 AVRNNI 245 A+R + Sbjct: 202 ALRMGV 207 >gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri] Length = 233 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 217 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L WI+ G ++ EI L IS TV ++ +I+RK R+ A A+ + Sbjct: 154 LTEREREVLGWIARGASNPEIGRQLHISSGTVRVHVHAILRKLGATDRTQAAVLALEKGL 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|258592075|emb|CBE68380.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 89 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT REVE LTW+++GKT+ EI IL S TV ++ I K Sbjct: 20 LTRREVEVLTWVTDGKTNAEIGEILDTSPRTVQKHLEHIFEK 61 >gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185] gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli M718] gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185] gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli M718] Length = 210 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201 Query: 240 AVRNNI 245 A+R + Sbjct: 202 ALRMGV 207 >gi|270262679|ref|ZP_06190950.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043363|gb|EFA16456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 950 Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S+DV+WG L+ RE++ L I+EG+T+ +IA L IS TV ++ + K +R+ Sbjct: 882 SHDVYWG----LSERELQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLNVNSRT 937 Query: 235 GAIAYAV 241 A++ A+ Sbjct: 938 QAMSRAL 944 >gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 248 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai] gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli O157:H7 str. EC4024] gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli] gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. EC1212] Length = 210 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201 Query: 240 AVRNNI 245 A+R + Sbjct: 202 ALRMGV 207 >gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 248 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|297204156|ref|ZP_06921553.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714163|gb|EDY58197.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 232 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE + LT ++ G+++ EIA L I+ TV +++++I+ K + R A+ +A + + Sbjct: 162 LTGRERDVLTAVASGESNAEIADRLCIAPTTVKSHVSNILTKIGARGRVQAVVFAYESGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1] gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18] gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] Length = 239 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q+ +++ K LT RE E L W + GKTS EI+VI S VN ++ +I R Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A AV ++ Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237 >gi|91976846|ref|YP_569505.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91683302|gb|ABE39604.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 248 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 40/60 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT ++E L++++ G ++ +IA G+S NTV + +A++++K R+ A +AVRN+ Sbjct: 180 ELTRPQIELLSYLANGMSNRQIAKERGMSINTVKSQVATVIQKLNVTNRTQAALFAVRNS 239 >gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 247 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L W++ GK EIA I IS TV +++++ K +T A+ A++ Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 242 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 178 KLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLG 237 Query: 245 IV 246 ++ Sbjct: 238 LI 239 >gi|302387016|ref|YP_003822838.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] gi|302197644|gb|ADL05215.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] Length = 213 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LTGRE + LT +++G T EIA L +S + + ++ASI K + A+ A Sbjct: 150 DIPLTGRETQVLTLLAQGLTQREIAEELFLSVSCIKKHLASIYSKLNVNNKISAVQKARE 209 Query: 243 NNIV 246 +NI+ Sbjct: 210 SNIL 213 >gi|315505327|ref|YP_004084214.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411946|gb|ADU10063.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 207 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG ++EIA L S TV N I + + + RS A+AYA+R+ + Sbjct: 147 LTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALRSGM 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 217 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 181 GKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G D LTG RE E ++ G T+ EIA L IS TV + A+I+RK +TR+ Sbjct: 144 GVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRA 203 Query: 235 GAIAYAVRNNIV 246 + YA+ ++++ Sbjct: 204 DLVRYAIHHHLI 215 >gi|134101423|ref|YP_001107084.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914046|emb|CAM04159.1| probable transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 84 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++LT RE++ +T ++ G ++ EIA L +SR TV+ ++ I+ K A +R+ A A R Sbjct: 12 YDLTVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAALAARE 71 Query: 244 NI 245 + Sbjct: 72 GL 73 >gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 74 Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 240 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 208 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L + EGK++ EIA L +S NT+ ++ IM K A R A+R+ + Sbjct: 148 LSPRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 209 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I+EGKT+ +I+ L I+ +TV ++ I+ K R+ AI AV I Sbjct: 147 LSTREQEVLQLIAEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIVQAVNQGI 206 Query: 246 V 246 V Sbjct: 207 V 207 >gi|134100027|ref|YP_001105688.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133912650|emb|CAM02763.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I EG T+ EI+ + ++ TV NY++ ++ K A + RS A A Sbjct: 150 ELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLA 205 >gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS] gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia coli ATCC 8739] gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS] gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482] gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88] Length = 210 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201 Query: 240 AVRNNI 245 A+R + Sbjct: 202 ALRMGV 207 >gi|2394388|gb|AAC46165.1| MxaB [Methylobacterium extorquens AM1] Length = 208 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243 L+ RE++ L+ +S+GK+ D IA + +S T+ N +S+ +K ++R+G + AV RN Sbjct: 146 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 205 Query: 244 NIV 246 ++ Sbjct: 206 ALL 208 >gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus A5948] gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30] gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122] gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus A5948] gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30] gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20] gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus] gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus] gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus] gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01] gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11] gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46] gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21189] Length = 209 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein ygeK Length = 210 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201 Query: 240 AVRNNI 245 A+R + Sbjct: 202 ALRMGV 207 >gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp. aureus T0131] Length = 209 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2] gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1] Length = 223 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q+ +++ K LT RE E L W + GKTS EI+VI S VN ++ +I R Sbjct: 142 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 201 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A AV ++ Sbjct: 202 KFGVTSRRVAAIMAVNLGLI 221 >gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L I+EG ++ EIA L +S TV +I ++ KT + R+ A+ YA Sbjct: 154 LTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARDRTQAVRYA 208 >gi|254467179|ref|ZP_05080590.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206688087|gb|EDZ48569.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 231 Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L I EGK + +IA L I+ TV +I +IMRK ++R+ A+ A Sbjct: 160 QLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHITAIMRKLGVQSRTQAVLAA 215 >gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 93 Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 37/57 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L ++ G T+ EI+ L IS+ TV+N+I++I+ KT T R + +A+ Sbjct: 12 LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALH 68 >gi|124006802|ref|ZP_01691632.1| two-component response regulator [Microscilla marina ATCC 23134] gi|123987483|gb|EAY27192.1| two-component response regulator [Microscilla marina ATCC 23134] Length = 208 Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L ++ EG ++ EIA L IS TV+N+ A+I++K K + +A+ + Sbjct: 147 QLSAREKEVLHFLVEGLSNKEIADKLFISSKTVDNHRANILKKLNLKNNVQLVRFALEHK 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q+ +++ K LT RE E L W + GKTS EI+VI S VN ++ +I R Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A AV ++ Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237 >gi|304312346|ref|YP_003811944.1| Response regulator, LuxR family [gamma proteobacterium HdN1] gi|301798079|emb|CBL46301.1| Response regulator, LuxR family [gamma proteobacterium HdN1] Length = 209 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E IS +T EIA L IS TV+ Y I+ K T + + YA+R+++ Sbjct: 148 LSKREFEVFLLISSARTPTEIATQLNISPKTVSTYRTRILEKMNMTTNAEVMQYAIRHDL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 217 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 181 GKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G D LTG RE E ++ G T+ EIA L IS TV + A+I+RK +TR+ Sbjct: 144 GVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRA 203 Query: 235 GAIAYAVRNNIV 246 + YA+ ++++ Sbjct: 204 DLVRYAIHHHLI 215 >gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 240 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 199 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + + LT RE + L I++GKT+ EIA L ++ TV NY+++IM K R A Sbjct: 129 DMAYEEGNPLTTREEQVLKLIADGKTTKEIAGQLYLTNGTVRNYVSTIMDKLNVSNRIEA 188 Query: 237 IA 238 I+ Sbjct: 189 IS 190 >gi|284045278|ref|YP_003395618.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949499|gb|ADB52243.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 519 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ E+A L I+ T N++ + K +R+ A YA+R+ + Sbjct: 458 LTARELEVLVLVARGASAREVAGELVIAEKTARNHVECVYGKLGVSSRAEATLYAMRHGL 517 Query: 246 V 246 V Sbjct: 518 V 518 >gi|302868292|ref|YP_003836929.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302571151|gb|ADL47353.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 207 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG ++EIA L S TV N I + + + RS A+AYA+R+ + Sbjct: 147 LTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALRSGM 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144] gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144] Length = 209 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|255530955|ref|YP_003091327.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255343939|gb|ACU03265.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 267 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 44/73 (60%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++Y + +D L+ E + L ++++G +S +IA IS NTV N+ ++++KT TK Sbjct: 195 ENYFFPYAEDKLLSHHERDILCYMADGLSSKQIASRFNISENTVANHRKNMLKKTNTKNV 254 Query: 234 SGAIAYAVRNNIV 246 + +++A + ++ Sbjct: 255 AELVSFACKTQLI 267 >gi|163853534|ref|YP_001641577.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218532393|ref|YP_002423209.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240140953|ref|YP_002965433.1| MxaB [Methylobacterium extorquens AM1] gi|163665139|gb|ABY32506.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218524696|gb|ACK85281.1| two component transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] gi|240010930|gb|ACS42156.1| MxaB [Methylobacterium extorquens AM1] Length = 225 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243 L+ RE++ L+ +S+GK+ D IA + +S T+ N +S+ +K ++R+G + AV RN Sbjct: 163 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 222 Query: 244 NIV 246 ++ Sbjct: 223 ALL 225 >gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 211 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 38/74 (51%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F + G +LT R+ E L ++ G+T+ EIA LGIS TV + + +M + Sbjct: 137 FSDAEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVHD 196 Query: 233 RSGAIAYAVRNNIV 246 +G +A++ +V Sbjct: 197 VTGLTRFALQTGVV 210 >gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144] gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045] gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028] Length = 209 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|329957447|ref|ZP_08297922.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] gi|328522324|gb|EGF49433.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] Length = 238 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +L+ RE+E L I++G + EIA L IS TV + +I+ K K+ SG YAV Sbjct: 170 DHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 229 Query: 243 NNIV 246 + + Sbjct: 230 HGYI 233 >gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 242 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE ECL W + GK++ +I ILGIS +T +Y+ + K +T Sbjct: 179 LSAREFECLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRT 225 >gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens TA208] gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens LL3] Length = 199 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +G++ LT RE L +++GK + EIA L I TV NY++ I+ K K R AI Sbjct: 132 YGEENPLTEREKAVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAI 189 >gi|269139570|ref|YP_003296271.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202] gi|267985231|gb|ACY85060.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202] gi|304559458|gb|ADM42122.1| Transcriptional regulator CsgD [Edwardsiella tarda FL6-60] Length = 210 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + +G ++ +I+ IL IS NTV +I +I +K A K R A+ +A Sbjct: 150 LTLRELEVLKAMQQGASNLDISRILYISENTVRTHIYNIFKKIAVKNRIQAVKWA 204 >gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] Length = 304 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181 G D Y + D + + L++ G +I D R+WE + +F+S G Sbjct: 186 GADG-YVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWE----ENKETGLFESRSD--G 238 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ L+ RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 239 IEYGLSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 297 >gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 218 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LTGRE E L ++ G+T+ EIA L + +TV ++AS+M K + R Sbjct: 155 LTGREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNR 202 >gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 259 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++ G TS EI L IS TVN +I +I RK +TR+ A+ +A Sbjct: 199 LSTREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAVRFA 253 >gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct] Length = 240 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q+ +++ K LT RE E L W + GKTS EI+VI S VN ++ +I R Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A AV ++ Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237 >gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 209 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|119715592|ref|YP_922557.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119536253|gb|ABL80870.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 217 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+D LT RE E L I++G ++ EIA +S N+V YI + RK R+ A+A+ Sbjct: 141 GRDVGLTAREAEVLALITQGLSNQEIAEHTYLSINSVKTYIRTAYRKIEVTRRAQAVAWG 200 Query: 241 VRNN 244 + + Sbjct: 201 MTHG 204 >gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 247 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L W++ GK EIA I IS TV +++++ K +T A+ A++ Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|319948162|ref|ZP_08022323.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319438174|gb|EFV93133.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 294 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L +++GKT+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 233 LSRRELDVLACVAQGKTNIETAADMGIGAETVKSYLRSVMRKLDAHTRFEAVNAARR 289 >gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 216 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 185 ELTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L + +G TS+ ++A L +S NTV ++ +I+ K + R+ IAYA+R+ Sbjct: 149 ELTEREREVLELLVQGVTSNKDLADRLFVSENTVKYHLRNILNKLHLQNRAQVIAYALRH 208 Query: 244 NIV 246 +V Sbjct: 209 GLV 211 >gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 239 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L+ +++G ++ EIA L + TV +++ I+ K + R+ A+ +A N Sbjct: 173 ELTDREFEVLSLLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENG 232 Query: 245 IV 246 IV Sbjct: 233 IV 234 >gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 262 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT ++ CLTW++ GKTS EI ILG S TV+ ++ M R+ A A + Sbjct: 200 LTPCQIVCLTWVARGKTSAEIGEILGCSHYTVDYHVKKAMEALNIWGRTAAAVQATVQGL 259 Query: 246 V 246 + Sbjct: 260 I 260 >gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola] gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] Length = 247 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L W++ GK EIA I IS TV +++++ K +T A+ A++ Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 886 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+E L I+EG ++ EIA L +S TV + +I K + +R+ A+A A R N+ Sbjct: 826 LSGRELEVLGLIAEGLSNSEIARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRLNL 885 >gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 223 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L + +G+++ EIA L IS +TV +++ ++ K + R+GA A+R+ Sbjct: 159 QLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDRTGAAIEAIRHG 218 Query: 245 IV 246 IV Sbjct: 219 IV 220 >gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 198 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +S+GK++ +I L +S +TV + + RK + R+ A+A+ R Sbjct: 136 QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 195 Query: 245 IV 246 +V Sbjct: 196 LV 197 >gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551] gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319] gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551] gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319] Length = 74 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 249 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE++CL W + GKT +IA I+GI+ TV ++ + K R+ AI Sbjct: 184 LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAI 235 >gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +T RE E L ++EG +S EIA +L IS TV+ + A+++ K + R YA+R Sbjct: 156 DQVVTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIR 215 Query: 243 NNIV 246 ++ Sbjct: 216 AGLI 219 >gi|288940382|ref|YP_003442622.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895754|gb|ADC61590.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 208 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E + +++GK++ EIA LG+S TV + A +M K R+ ++A VR Sbjct: 144 ELTPREHEVMAMVTDGKSNKEIAAALGVSAKTVEAHRARVME----KMRAESLAELVRMA 199 Query: 245 IV 246 ++ Sbjct: 200 LI 201 >gi|111021259|ref|YP_704231.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820789|gb|ABG96073.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 881 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + +T+++IA L +S NTV ++ I RK +R AIA A N + Sbjct: 821 LTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDAIAAAQHNGL 880 Query: 246 V 246 + Sbjct: 881 L 881 >gi|158315976|ref|YP_001508484.1| LuxR family GAF modulated transcriptional regulator [Frankia sp. EAN1pec] gi|158111381|gb|ABW13578.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 285 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F L+ RE++ L ++EG ++ E A L +S TV Y+ SIM K R+ A+ A Sbjct: 220 QPFGLSPRELDVLRLVAEGMSNAETARRLAVSPETVKAYLRSIMNKLGVHNRTAAVNVAR 279 Query: 242 RNNIV 246 R++++ Sbjct: 280 RSSLL 284 >gi|325293391|ref|YP_004279255.1| transcriptional regulator, MerR family [Agrobacterium sp. H13-3] gi|325061244|gb|ADY64935.1| transcriptional regulator, MerR family [Agrobacterium sp. H13-3] Length = 231 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKD LT E +CL ++EG +A LG+S N +N A I+ K + R A+A A Sbjct: 164 GKDIALTDNERKCLELMAEGYAPVRLARALGLSGNDLNELEAKIIGKFSASNRFQAVAKA 223 Query: 241 V 241 V Sbjct: 224 V 224 >gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1070 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE L ++ G T+ +IA L IS TV +++SI K +RS A YA+ ++ Sbjct: 1009 DLTEREVEVLRSLATGLTNAQIAEQLVISPRTVQAHLSSIYNKIGVSSRSAATRYALEHH 1068 Query: 245 I 245 + Sbjct: 1069 L 1069 >gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1] gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1] Length = 74 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|2367439|gb|AAB69646.1| LuxR homolog [Pectobacterium betavasculorum] Length = 242 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT E+A+ILGI +TV +I ++++K AI V Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234 >gi|298505405|gb|ADI84128.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 216 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EGK + E+A L +S TV + IMRK T + + +A+R + Sbjct: 153 LTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADMTKFAIREGL 212 >gi|320012198|gb|ADW07048.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 987 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E ++EG T+ IA L +S TV +++ + RKT TR+G A R+ Sbjct: 930 LTAREREVAGMVAEGLTNQAIATRLFLSPRTVETHVSRVFRKTGVATRAGLAALMARS 987 >gi|254563463|ref|YP_003070558.1| MxaB [Methylobacterium extorquens DM4] gi|254270741|emb|CAX26746.1| MxaB [Methylobacterium extorquens DM4] Length = 225 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243 L+ RE++ L+ +S+GK+ D IA + +S T+ N +S+ +K ++R+G + AV RN Sbjct: 163 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 222 Query: 244 NIV 246 ++ Sbjct: 223 ALL 225 >gi|254448074|ref|ZP_05061537.1| response regulator, NarL-family [gamma proteobacterium HTCC5015] gi|198262200|gb|EDY86482.1| response regulator, NarL-family [gamma proteobacterium HTCC5015] Length = 213 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L I++G T + +LGISRNT Y+ I RK +R+ A A R Sbjct: 148 LTQREHDVLALIAKGYTVKKAGELLGISRNTCAGYVKDIYRKLQISSRAEATVEASR 204 >gi|188583806|ref|YP_001927251.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347304|gb|ACB82716.1| two component transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 226 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243 L+ RE++ L+ +S+GK+ D IA + +S T+ N +S+ +K ++R+G + AV RN Sbjct: 164 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 223 Query: 244 NIV 246 ++ Sbjct: 224 ALL 226 >gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis] gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis] Length = 74 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato Max13] gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato K40] gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 247 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L W++ GK EIA I IS TV +++++ K +T A+ A++ Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|296503059|ref|YP_003664759.1| two-component protein kinase [Bacillus thuringiensis BMB171] gi|296324111|gb|ADH07039.1| two-component protein kinase [Bacillus thuringiensis BMB171] Length = 319 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181 G D Y + D + + L++ G +I D R+WE + +F+S G Sbjct: 201 GADG-YVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWE----ENKETGLFESRSD--G 253 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ L+ RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 254 IEYGLSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 312 >gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 208 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L + EGK++ EIA L +S NT+ ++ IM K A R A+R+ + Sbjct: 148 LSPRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] Length = 239 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q+ +++ K LT RE E L W + GKTS EI+VI S VN ++ +I R Sbjct: 158 ALQSGAGLAFEHPVNKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A AV ++ Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237 >gi|212638135|ref|YP_002314655.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559615|gb|ACJ32670.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 213 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + G T+++IA L IS TV N+ +IM+K K + I YA++N+I Sbjct: 150 LTNREREIVRLTFLGYTNNQIANKLKISPKTVENHKTNIMQKLGIKEKHELIQYALKNHI 209 >gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 248 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L WI+ GK++ IA I+G+SR+TV+ + + K R+ A AVR Sbjct: 180 LSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRA---AVRG 234 >gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 222 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG +S EIA +L IS TV + +++ K + R YA+R + Sbjct: 160 LTPREEEVLKLVAEGHSSKEIAELLFISVKTVQRHRENLLHKLGLRDRLDLTRYAIRAGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|225011599|ref|ZP_03702037.1| two component transcriptional regulator, LuxR family [Flavobacteria bacterium MS024-2A] gi|225004102|gb|EEG42074.1| two component transcriptional regulator, LuxR family [Flavobacteria bacterium MS024-2A] Length = 209 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Query: 174 KSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 K+ D+H ++ L+ RE+E L ++ EGK + EIA L I + TVN Y + +M+K Sbjct: 135 KNVDLHRPRNAYGTLSSREIEVLKYLIEGKRNVEIAATLKIHQKTVNTYKSRLMKK 190 >gi|220925456|ref|YP_002500758.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950063|gb|ACL60455.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 238 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G + LT REVE L +++ G ++ IA L I+ TV ++ SI+RKT + R+ A + Sbjct: 164 GANETLTEREVEILAYLAAGLSNKLIARRLSIAEATVKIHVKSILRKTGLQNRTQAAIWT 223 Query: 241 VRNNI 245 R+ I Sbjct: 224 HRHGI 228 >gi|170723751|ref|YP_001751439.1| two component LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169761754|gb|ACA75070.1| two component transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 258 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD-----FE-LTGREVECLTWISEGKTSDEIAVIL 210 D L++ A Q ++ DV G+ FE L+ R++E +S+GKT+ +IA L Sbjct: 155 DELYQDLEKARGQGVHRRASDVEEGESDLPAAFEKLSPRQLEVARLVSKGKTNYQIACEL 214 Query: 211 GISRNTVNNYIASIMRKTATKTRS 234 GI+ NTV Y++ ++R T R+ Sbjct: 215 GITENTVKLYVSQVLRLTHMHNRT 238 >gi|146301956|ref|YP_001196547.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] gi|146156374|gb|ABQ07228.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] Length = 251 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L + +GK S EIA +L IS+NTV+ + +I+ K + A AV+ Sbjct: 191 LSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAEACTLAVK 247 >gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4] gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4] Length = 178 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +S+GK++ +I L +S +TV + + RK + R+ A+A+ R Sbjct: 116 QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 175 Query: 245 IV 246 +V Sbjct: 176 LV 177 >gi|284040245|ref|YP_003390175.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819538|gb|ADB41376.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 223 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE + LT + +G +S EIA GIS NTV N ASI+RK K + I A+ Sbjct: 164 ITSREGQVLTCLIDGMSSPEIAEKFGISPNTVANQRASIIRKAGVKNTADLIRLAL 219 >gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] Length = 74 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|226363605|ref|YP_002781387.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242094|dbj|BAH52442.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 897 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + +T+++IA L +S NTV ++ I RK +R AIA A N + Sbjct: 837 LTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDAIAAAQHNGL 896 Query: 246 V 246 + Sbjct: 897 L 897 >gi|212693876|ref|ZP_03302004.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855] gi|212663408|gb|EEB23982.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855] Length = 214 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L I++G + EIA L IS TV ++ +I K K+ SG YAV Sbjct: 146 EHELSIREIEVLILITKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVM 205 Query: 243 NNIV 246 N + Sbjct: 206 NGYI 209 >gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 269 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 205 KLTPRERECLKWTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLG 264 Query: 245 IV 246 ++ Sbjct: 265 LI 266 >gi|152982513|ref|YP_001353581.1| LuxR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282590|gb|ABR91000.1| transcriptional regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 313 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L+W+++GKT+ +I IL +S TV+ ++ I K +TR Sbjct: 244 LTPRETEVLSWLAKGKTNRDIGEILKMSPRTVSKHLEHIFEKLGVETR 291 >gi|144900171|emb|CAM77035.1| CheB methylesterase:MCP methyltransferase, CheR-type [Magnetospirillum gryphiswaldense MSR-1] Length = 1435 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 30/47 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT R+ + + + G S IA LGIS+ TV N+ A+IMRKT +K+ Sbjct: 1375 LTPRQHQIMDMVLAGHPSKNIAADLGISQRTVENHRAAIMRKTGSKS 1421 >gi|170721339|ref|YP_001749027.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759342|gb|ACA72658.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 491 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A Sbjct: 428 DLTRRERDVLALICEGLADKEIATRLNLALNTVRNHVATVYSKLDVHSRSEAIVWA 483 >gi|16760019|ref|NP_455636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142210|ref|NP_805552.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162401|ref|ZP_03348111.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427737|ref|ZP_03360487.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581810|ref|ZP_03363636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213618652|ref|ZP_03372478.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646854|ref|ZP_03376907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864885|ref|ZP_03387004.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828614|ref|ZP_06546439.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|291080868|ref|ZP_06537029.2| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25298760|pir||AG0635 probable regulatory protein STY1179 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502313|emb|CAD08266.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137840|gb|AAO69401.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 208 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238 NTV ++ ++ +K A K R+ A++ Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVS 208 >gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 233 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W++ GK+ +I ILGIS TV ++ S K T + A+ A+ + Sbjct: 170 LSTREIEVLQWVAAGKSQMDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGL 229 Query: 246 V 246 V Sbjct: 230 V 230 >gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0101] Length = 79 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 37/57 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E + +++G T+ EI L IS+ TV+N+++++ KT K R + +A+ Sbjct: 2 DLSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAM 58 >gi|312198483|ref|YP_004018544.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229819|gb|ADP82674.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 1022 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE+E L ++ G ++ +IA L ISR T + ++++I+ K TR A A A Sbjct: 949 GPPLGLTARELEVLRLVAAGGSNPQIASALFISRKTASTHVSNILGKLGVATRGEAAAVA 1008 Query: 241 VR 242 R Sbjct: 1009 HR 1010 >gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 262 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++ G TS EI L IS TVN +I +I RK +TR+ A+ +A Sbjct: 202 LSQREKEVLRMVASGYTSAEIGNRLFISSLTVNTHIKNIYRKLQVRTRAQAVRFA 256 >gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 93 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 37/57 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L ++ G T+ EI+ L IS+ TV+N+I++I+ KT T R + +A+ Sbjct: 12 LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALH 68 >gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ GK++ EIA IL I+ TV ++ +I++K + R+ A A++ + Sbjct: 160 LTKREQEILALIASGKSNQEIADILYIAPGTVRVHVHTILKKLNARDRTQAALVAIQKKL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580] gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. 168] gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. JH642] gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. SMY] gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5] gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis] gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580] gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5] Length = 74 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH 391-98] Length = 74 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 100 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + I+ G ++ +IA L IS+ TV+N++++I+ KT T R + +AV+ Sbjct: 12 LSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRWAVQ 68 >gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 220 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L+ ++ GK++ EI V L IS TV +++ SI K +R+ AIA A R + Sbjct: 157 LTSRELAVLSLLALGKSNKEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASRRGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 226 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ A++N Sbjct: 163 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVIVAIKN 220 >gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 234 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G +LT RE E L+ I+EG+++ E+A +G+ TV + +M K +G YA Sbjct: 165 GNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIHNVAGLTKYA 224 Query: 241 VRNNIV 246 + + I+ Sbjct: 225 IAHGII 230 >gi|86147858|ref|ZP_01066164.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] gi|85834385|gb|EAQ52537.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] Length = 215 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211 Query: 243 N 243 N Sbjct: 212 N 212 >gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] Length = 210 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L I+ TV ++++I+ K + R+ A YA +++ Sbjct: 148 DLTNREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHH 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 207 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F+LT RE E L + EG ++DEIA L ++ TV NYI++++ K + R+ Sbjct: 147 FQLTKREFEVLKLVGEGLSNDEIAQKLFLTPGTVRNYISNLLVKLNLRDRT 197 >gi|160947148|ref|ZP_02094315.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270] gi|158446282|gb|EDP23277.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270] Length = 199 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 KDFEL T +E+E L I++G ++ EI+ L +S TV NYI+ I+ K + R+ Y Sbjct: 137 KDFELLTQKEIEILEQIAKGLSNKEISEKLFLSEGTVRNYISGILEKLELRDRTQLAIY 195 >gi|254421507|ref|ZP_05035225.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196188996|gb|EDX83960.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 101 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 41/63 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE+E + ++ G T+ EI+ L IS+ TV+N++++I+ KTA R + +A+++ Sbjct: 24 HDLSKRELEIVELVAAGLTNQEISQRLEISKRTVDNHVSNILSKTAAGNRVALVRWALQS 83 Query: 244 NIV 246 V Sbjct: 84 GKV 86 >gi|113866807|ref|YP_725296.1| response regulator [Ralstonia eutropha H16] gi|113525583|emb|CAJ91928.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 216 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ ++EG +E+A L +S TV+ + A+I+ K + +G + YA+R+ + Sbjct: 149 LTARELQVFQMLAEGLGINEVAAALSLSAKTVSTHKANILGKMDIASTAGLVHYAIRHGL 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 224 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R+ E L + +GK++ EIA +L +S TV ++ +I++ R+GA+ A R Sbjct: 163 LTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQR 219 >gi|218708362|ref|YP_002415983.1| transcriptional regulator [Vibrio splendidus LGP32] gi|218321381|emb|CAV17331.1| transcriptional regulator [Vibrio splendidus LGP32] Length = 215 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211 Query: 243 N 243 N Sbjct: 212 N 212 >gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L WI+EGKT EIA IL +S + V+ I K R A+ A+R + Sbjct: 179 LTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGV 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 255 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ REVECL W + GKT EI++I+G SR TV +I + K RS + A + Sbjct: 191 LSKREVECLRWAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVNRSQTVFKAAQ 247 >gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 229 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G T +EIA L +SR+TV +I +I RK +TR A+ A++ + Sbjct: 167 LTPRELDILWGIAKGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQCGL 226 Query: 246 V 246 + Sbjct: 227 I 227 >gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 221 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+ G ++ EIA L IS TV ++++I+ K R+ A YA+R + Sbjct: 152 LTEREMDVLRLIARGHSNREIADSLIISEKTVKTHVSNILSKLHLADRTQAAIYALRQRL 211 Query: 246 V 246 V Sbjct: 212 V 212 >gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium petroleiphilum PM1] Length = 237 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE++ L W +GKT+ E+ I+GIS T +I + M K A + A+ A+R Sbjct: 175 KLTPRELDSLRWTMDGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALR 232 >gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 491 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A Sbjct: 428 DLTRRERDVLALICEGLADKEIAARLNLALNTVRNHVATVYSKLDVHSRSEAIVWA 483 >gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 199 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK++ EIA IL ++ TV NYI++I+ K R AI Sbjct: 138 LTEREREVLVHMADGKSTKEIANILHLTNGTVRNYISTILDKLEVGNRIEAI 189 >gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT 9303] gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus marinus str. MIT 9303] Length = 92 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 12 ISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69 >gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 214 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L W S GKT EIA+I GI+ TV +I ++++K AI V Sbjct: 149 LSPRENEVLHWASMGKTYQEIALITGITSRTVKYHIGNVVKKLGVINAKQAIRLGVE 205 >gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 224 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ GK++ EIA IL I+ TV ++ +I++K + R+ A A++ + Sbjct: 157 LTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQKGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9313] gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9313] Length = 92 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 38/58 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 12 ISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69 >gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 207 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REV+ L I G + +IA L I+ +TV N++ +I+ K + R+ A A++ Sbjct: 144 DLSAREVQVLGLIVRGLANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRG 203 Query: 245 IV 246 I+ Sbjct: 204 II 205 >gi|295134050|ref|YP_003584726.1| two-component response regulator [Zunongwangia profunda SM-A87] gi|294982065|gb|ADF52530.1| two-component response regulator [Zunongwangia profunda SM-A87] Length = 214 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L I++ T+ EIA +L +S++T+ +Y +++ K + +G YA+ Sbjct: 151 EIRLTQREKEVLQLIAKEHTTQEIADMLFLSKHTIESYRKNLINKLEVRNLAGLTRYAIE 210 Query: 243 NNIV 246 +N+V Sbjct: 211 HNMV 214 >gi|294010919|ref|YP_003544379.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292674249|dbj|BAI95767.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 296 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L WIS GK++ + + IL IS TVN ++ I K + R Sbjct: 229 FGLTRREAEVLLWISRGKSNRDASEILNISARTVNKHLEQIFVKMGVENR 278 >gi|284042088|ref|YP_003392428.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946309|gb|ADB49053.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 196 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 157 DRLWEIG--LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGIS 213 DR W + L A A + + +H L+ RE + LT +SEG T+ +I L +S Sbjct: 103 DRTWPVARLLTALRAAGLDDTAPIHRPPSPTRLSERERQVLTLVSEGSTNAQIGRSLCLS 162 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 +T+ + +S+ RK + R+ A+ A Sbjct: 163 PHTIKQHTSSVYRKLHARNRAEAVTRA 189 >gi|239983155|ref|ZP_04705679.1| LuxR family transcriptional regulator [Streptomyces albus J1074] gi|291454986|ref|ZP_06594376.1| LuxR-family transcriptional regulator [Streptomyces albus J1074] gi|291357935|gb|EFE84837.1| LuxR-family transcriptional regulator [Streptomyces albus J1074] Length = 275 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L ++ G T+ +A LG+ TV Y+ S MRK TR A+ A R + Sbjct: 214 LTPREVDVLVCVAGGATNAAVAGRLGVRPETVKGYLRSAMRKLGAHTRLEAVVAARRQGL 273 Query: 246 V 246 + Sbjct: 274 L 274 >gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+ + EIA L ++ TV ++++I+ K R+ A +AVR+ I Sbjct: 157 LTAREREVLVLIAQGRANREIARALVLAEKTVKTHVSNILMKLGVADRTQAALWAVRHGI 216 >gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 219 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+++ G ++ IA L I TV ++ SI RK R+GA+A A+R I Sbjct: 158 LTQRESEILSFVVTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATALREGI 217 >gi|89893631|ref|YP_517118.1| hypothetical protein DSY0885 [Desulfitobacterium hafniense Y51] gi|89333079|dbj|BAE82674.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +G++ LR GL H G + LT RE + L ++ G TS EI Sbjct: 131 QGQVFLRPE----GLAVLTVQQKLNKKQKHCGGEPVLTERETQVLGMVARGYTSKEIGEK 186 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L I+ +TV+ Y +++K TR+ + YA+ ++I Sbjct: 187 LYIAPSTVDTYRERLIKKLEFTTRAQLVDYAILHDI 222 >gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 211 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L +++G ++ EIA L +S TV ++ + KT ++ R AIAYA R Sbjct: 151 LTAREAEVLICMAKGLSNREIARSLFVSEATVKTHVNRVFAKTGSRDRGQAIAYAHR 207 >gi|302559531|ref|ZP_07311873.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] gi|302477149|gb|EFL40242.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] Length = 202 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT REVE L ++EG + +IA +S TV NY+ +I+ K + R A+ A Sbjct: 138 DSPLTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARD 197 Query: 243 NN 244 N Sbjct: 198 NG 199 >gi|253564051|ref|ZP_04841508.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5] gi|251947827|gb|EES88109.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5] gi|301161648|emb|CBW21188.1| putative LuxR family transcriptional regulator [Bacteroides fragilis 638R] Length = 199 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I++G + EIA L I TV + +I K K+ SG YAV N Sbjct: 133 ELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 192 Query: 245 IV 246 V Sbjct: 193 YV 194 >gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 215 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L I+EG ++ EIA L IS TV+ + +I+ K + R YA+R Sbjct: 150 DSILTPREEEVLKLIAEGYSTREIAATLTISAKTVDRHRTNILAKLGLRDRLALTRYAIR 209 Query: 243 NNIV 246 ++ Sbjct: 210 AGLI 213 >gi|35186966|gb|AAQ84141.1| PlmR3 [Streptomyces sp. HK803] Length = 213 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE++ L +SEGK EIA L S TV + +M++ + RS A++YA+R ++ Sbjct: 156 RELDVLRLVSEGKELAEIAAKLCYSERTVKYILHGLMKRLQLRNRSHAVSYAIRAGLI 213 >gi|311896158|dbj|BAJ28566.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 202 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LTGRE+E L +EG EIA L +S TV NY+ +++ K + R AI A Sbjct: 138 DCPLTGREIEVLRLAAEGAEVAEIASRLFLSSGTVRNYLTTVVSKLNARNRVDAIRVA 195 >gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 234 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRRAAAVIAAQLG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|39996395|ref|NP_952346.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983275|gb|AAR34669.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] Length = 216 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EGK + E+A L +S TV + IMRK T + + +A+R + Sbjct: 153 LTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADLTKFAIREGL 212 >gi|60680121|ref|YP_210265.1| LuxR family transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|265765259|ref|ZP_06093534.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16] gi|60491555|emb|CAH06307.1| putative LuxR family transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|263254643|gb|EEZ26077.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16] Length = 199 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I++G + EIA L I TV + +I K K+ SG YAV N Sbjct: 133 ELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 192 Query: 245 IV 246 V Sbjct: 193 YV 194 >gi|56751843|ref|YP_172544.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81301073|ref|YP_401281.1| LuxR family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686802|dbj|BAD80024.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81169954|gb|ABB58294.1| transcriptional regulator, LuxR family [Synechococcus elongatus PCC 7942] Length = 91 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 13 LSERELQIVDLVAAGLTNQEIATRLDISKRTVDNHISNILTKTGTDNRVALVRWALQ 69 >gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] Length = 596 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK++ LT RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 530 GKEYGLTKRELEVLNLLSQGIRYKTIASELYLSNGTVRNYASTLYDKLGVKNREEAVQKA 589 >gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 240 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L WI+EGKT EIA IL +S + V+ I K R A+ A+R + Sbjct: 179 LTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGV 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A] Length = 91 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 38/56 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 14 LSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69 >gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 276 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ EC+ W + GKT+ EIA ILGIS TV ++ + + RS I A+ + + Sbjct: 204 LTERQRECVLWSARGKTAGEIADILGISEETVVRHLKMARERYSVHCRSMLILCALFDGL 263 Query: 246 V 246 + Sbjct: 264 I 264 >gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 198 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L +S+GK++ +I L +S +TV + + RK + R+ A+A+ R Sbjct: 135 VQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRR 194 Query: 244 NIV 246 +V Sbjct: 195 GLV 197 >gi|320537182|ref|ZP_08037151.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320145970|gb|EFW37617.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 217 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ++ELT +E+E + ++EG ++ EIA +S T+ N I+ I KT R+ +A + Sbjct: 154 EYELTQKEIEIIKLVAEGFSNKEIAHKQQLSEGTIKNNISVIFSKTFVADRTQLALFAFK 213 Query: 243 NNIV 246 N IV Sbjct: 214 NGIV 217 >gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 216 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A+ N F+ ELT RE+E L +++GK++ +IA L I TV ++ ++ Sbjct: 134 VASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNL 193 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 + K + R+ A YA +N + Sbjct: 194 LAKLGVEDRTQAAIYAYKNGL 214 >gi|300215394|gb|ADJ79807.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 201 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L + ++ E+A +S T+ NYI+SI+ KT T++R A+ A + Sbjct: 138 DNPLTNREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197 Query: 243 NN 244 N Sbjct: 198 RN 199 >gi|50119067|ref|YP_048234.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49609593|emb|CAG73026.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 242 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT E+A+ILGI +TV +I ++++K AI V Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234 >gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E + I+EG +S EIA L IS TV+ + A+++ K + R YA+R Sbjct: 163 DSVLTPREEEIVKLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMRDRLELTRYAIR 222 Query: 243 NNIV 246 +V Sbjct: 223 AGLV 226 >gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] Length = 245 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+ILGI TV +I ++++K AI + Sbjct: 180 FSHRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236 >gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 198 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +S+GK++ +I L +S +TV + + RK + R+ A+A+ R Sbjct: 136 QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 195 Query: 245 IV 246 +V Sbjct: 196 LV 197 >gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911] gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911] Length = 198 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + ++ LT RE L +++GK ++EIA L I TV NY+++I+ K + R A Sbjct: 128 DDMYAEENPLTEREKAVLELVADGKNTNEIAAELSIKSGTVRNYVSAILEKLEVQNRIEA 187 Query: 237 I 237 I Sbjct: 188 I 188 >gi|251782925|ref|YP_002997228.1| two-component system response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391555|dbj|BAH82014.1| two-component system response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 198 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E+ L I++GKTS EI+ +L +S T+ NY +SI K R AI A +N Sbjct: 138 LTQQEMTILRLINQGKTSKEISQLLFLSSGTIRNYSSSIFDKLGVSNRIEAIRLANKN 195 >gi|224536867|ref|ZP_03677406.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus DSM 14838] gi|224521533|gb|EEF90638.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus DSM 14838] Length = 215 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ISEG S+EIA L IS NTV + IM K K S + A+++ + Sbjct: 153 LSKREQEVLKCISEGLKSNEIATKLYISVNTVEFHRKQIMLKLEAKNASDMLIKAIKSGV 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|123441372|ref|YP_001005359.1| LuxR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088333|emb|CAL11124.1| LuxR-family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 240 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + RE E + W S GK EIA+ILGI V +++ ++RK AI+ AV Sbjct: 175 FSTRENEIIYWASVGKAYQEIALILGIKPTAVKHHMGKVVRKLGVTNAKHAISLAV 230 >gi|109897088|ref|YP_660343.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699369|gb|ABG39289.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 881 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 43/83 (51%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +RD+ ++G+L + Y LT +E + L ++S G ++ EIA +L S+ Sbjct: 785 VRDKAKQLGVLEDLPSARRGPYKQTRQHPAGLTAKEQQVLGYLSAGSSNQEIADLLSRSQ 844 Query: 215 NTVNNYIASIMRKTATKTRSGAI 237 TV N+++SI+ K R AI Sbjct: 845 RTVENHVSSILSKLNVANRMEAI 867 >gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 99 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 158 Query: 246 V 246 + Sbjct: 159 I 159 >gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 223 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+ G ++ EIA L IS TV +++SI+RK +R+ A AVR + Sbjct: 159 LTERERDVLILIANGYSNKEIADELVISERTVRTHVSSILRKLRLSSRTQAALVAVREGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus aggregans DSM 9485] Length = 917 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++EG+++ EIA L I+ +TV ++I +I K +R+ A+A R + Sbjct: 856 LSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRLGL 915 Query: 246 V 246 + Sbjct: 916 I 916 >gi|108803724|ref|YP_643661.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764967|gb|ABG03849.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 253 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D L+ RE+E L I+ G+T+ EI L +S TV ++ SI RK + R+ AIA A Sbjct: 189 DEPLSERELEVLKHIASGRTNSEIGRHLYVSVGTVKSHTGSIYRKLGVRNRAEAIARA 246 >gi|62249408|gb|AAX77679.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] gi|84620011|gb|ABC59304.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT E+A+ILGI +TV +I ++++K AI V Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234 >gi|253690507|ref|YP_003019697.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|34398218|gb|AAQ67211.1| transcriptional regulator [Enterobacteriaceae bacterium A2JM] gi|251757085|gb|ACT15161.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 242 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT E+A+ILGI +TV +I ++++K AI V Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234 >gi|53711893|ref|YP_097885.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46] gi|52214758|dbj|BAD47351.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46] Length = 198 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I++G + EIA L I TV + +I K K+ SG YAV N Sbjct: 132 ELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 191 Query: 245 IV 246 V Sbjct: 192 YV 193 >gi|315642413|ref|ZP_07896990.1| LuxR family DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482290|gb|EFU72845.1| LuxR family DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 202 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+ L + G ++ ++A L +S T+ NYI+SI+ KT T +R AI A +N Sbjct: 141 LTKREMSVLAGLQTGASTAKMAEELFLSEGTLRNYISSILSKTGTHSRIEAINIAKKNG 199 >gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 213 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 147 GRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206 Query: 241 VRNNI 245 VR+ + Sbjct: 207 VRHGV 211 >gi|291300770|ref|YP_003512048.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569990|gb|ADD42955.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E + +++G T+DEIA + IS T +I M KTA + R+ + A + Sbjct: 154 DLTNREREAVALVAQGLTNDEIADHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYESG 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 503 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 10/119 (8%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181 G D Y + D + + L++ +I D R+WE + +F+S G Sbjct: 385 GADG-YVLKSIDSRELAESIRLVYRGSTMITHDLFHRMWE----ENEETGLFESQSD--G 437 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ LT RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 438 IEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 496 >gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42] gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42] Length = 199 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK + EIA L I TV NY++ I+ K K R AI Sbjct: 138 LTEREKEVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAI 189 >gi|124022984|ref|YP_001017291.1| hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT 9303] gi|123963270|gb|ABM78026.1| Hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE+E L I G ++ EI+ L +S TV + +++I+ K + R+ A +A+R Sbjct: 169 DCQLTERELEVLNAIVGGLSNKEISESLFVSSETVKSNVSTIISKLGVRVRTQAAVFAIR 228 Query: 243 NNIV 246 + IV Sbjct: 229 HRIV 232 >gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 209 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174 G+D R LT AR + M+ +L+D EI L LA+ N+F Sbjct: 76 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 135 Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 136 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 196 RVAATIMYLEN 206 >gi|9885632|gb|AAG01455.1|AF282857_3 HrpY [Pantoea stewartii subsp. stewartii] Length = 213 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + NM + +H +LT RE++ + ++ G+ + IA L IS TV+ + A +M K Sbjct: 138 FNENMSANEGLHQ----QLTAREMQIMLKLARGEGVNSIAEALAISNKTVSTHKARLMEK 193 Query: 228 TATKTRSGAIAYAVRNNIV 246 KT + + YA+ ++++ Sbjct: 194 MMFKTNADIVKYAISHHLI 212 >gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 200 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + + G++ LT RE E L I++GK + EIA L I+ TV NYI+ I+ K R A Sbjct: 130 EAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEA 189 Query: 237 I 237 I Sbjct: 190 I 190 >gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 220 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE+E L + G + EIA L I+ TV N++++I+ K + + R+ A Y+VR Sbjct: 156 LDLTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSVRDRTQAAIYSVR 214 >gi|291438340|ref|ZP_06577730.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291341235|gb|EFE68191.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 202 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT REVE L ++EG + +IA +S TV NY+ +I+ K + R A+ A Sbjct: 138 DSPLTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARD 197 Query: 243 NN 244 N Sbjct: 198 NG 199 >gi|167839343|ref|ZP_02466027.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 214 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 34/75 (45%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N+ D L+ RE E ++ G T EIA LGIS TV Y A ++ K A Sbjct: 136 NLHAPSDADAPPHERLSKREFEVFLHLAAGDTPAEIAQALGISAKTVRIYKAHVLDKLAL 195 Query: 231 KTRSGAIAYAVRNNI 245 S + YAV + I Sbjct: 196 PNESALVRYAVAHRI 210 >gi|84502331|ref|ZP_01000479.1| two-component response regulator [Oceanicola batsensis HTCC2597] gi|84389691|gb|EAQ02410.1| two-component response regulator [Oceanicola batsensis HTCC2597] Length = 213 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+D LT RE E L I G + E+A LGI+ +TV Y+ RK +R+ A +A Sbjct: 145 GQDAALTDREREVLGLIGRGLRNAEVAAELGIAVSTVAGYVKDTYRKLGISSRAEAAWHA 204 Query: 241 VR 242 R Sbjct: 205 TR 206 >gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 240 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|315649523|ref|ZP_07902608.1| two-component response regulator [Paenibacillus vortex V453] gi|315274996|gb|EFU38371.1| two-component response regulator [Paenibacillus vortex V453] Length = 236 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E + L ++ +GKT+ EI IL I T++N++ SI RK K R A A Sbjct: 152 LTPQERKILCYVYQGKTTSEIHRILNIEEKTIDNHVTSINRKLQVKNRREAAQVA 206 >gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 198 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L +S+GK++ +I L +S +TV + + RK + R+ A+A+ R Sbjct: 135 VQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRR 194 Query: 244 NIV 246 +V Sbjct: 195 GLV 197 >gi|298290539|ref|YP_003692478.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296927050|gb|ADH87859.1| transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 293 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ELT R++E +WI+ GK++++IA IL + +TV ++ +I K R Sbjct: 203 ELTPRQLEVGSWIARGKSNEDIATILDVGVDTVKAHVKAIHAKVGADGR 251 >gi|167645327|ref|YP_001682990.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347757|gb|ABZ70492.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 257 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE++CL W + GKT +IA I+GI+ TV ++ + K R+ A+ Sbjct: 184 LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAV 235 >gi|104779907|ref|YP_606405.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95108894|emb|CAK13590.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 249 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243 +L+ R++E +S+GKT+ +IA LGI+ NTV Y++ ++R T R+ A+A R+ Sbjct: 180 KLSPRQLEVAKLVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALALTPRS 239 Query: 244 NIV 246 + V Sbjct: 240 SPV 242 >gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 202 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174 G+D R LT AR + M+ +L+D EI L LA+ N+F Sbjct: 69 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 128 Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 129 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 188 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 189 RVAATIMYLEN 199 >gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli 1180] Length = 123 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + D +LT RE E L I++GKT+ EIA L +SR T+ + +IM+K Sbjct: 55 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKK 102 >gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE+E L +S GK++ +A L IS +TV N++ SI+ K R+ A+ A+R Sbjct: 150 RELEVLQEVSRGKSNKIVAGDLNISEHTVKNHLKSILSKLDASDRTDAVVIAIRRG 205 >gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] Length = 215 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +++GK++ EIA L ++ TV +I++I K + R+ A YAV++ + Sbjct: 150 LTPREQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 200 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + + G++ LT RE E L I++GK + EIA L I+ TV NYI+ I+ K R A Sbjct: 130 EAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEA 189 Query: 237 I 237 I Sbjct: 190 I 190 >gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii] Length = 240 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L+W SEG+T+ EI L IS TV +I +I+ K + A+ Sbjct: 176 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAV 227 >gi|298292393|ref|YP_003694332.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296928904|gb|ADH89713.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 310 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L W++ GK + +I ILG+S TVN ++ I K + R Sbjct: 247 LNLTVREAEVLMWLARGKANRDIGEILGLSPRTVNKHLEQIYAKIGVENR 296 >gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium lentocellum DSM 5427] Length = 210 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +GR ++ ++ E+ Y K + ++ T REV+ + +G T+ +IA Sbjct: 120 EGRFMMPQKVAEVLAKNIYAPEALKKRE----NPYDFTEREVQIAEMMKDGFTNKQIAKT 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGA 236 L IS TV NY+++I KT T+ R A Sbjct: 176 LYISEGTVKNYVSNIYAKTQTENRVEA 202 >gi|302525407|ref|ZP_07277749.1| predicted protein [Streptomyces sp. AA4] gi|302434302|gb|EFL06118.1| predicted protein [Streptomyces sp. AA4] Length = 217 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G L+ RE + L ++ G+ ++A IL IS TV +Y+ I KT + R+G + Sbjct: 149 HAGPKIVLSEREKQVLRLVAAGERDVDVAEILDISVRTVRSYLDRIRDKTGERRRAGFVR 208 Query: 239 YAVRNNIV 246 A+R ++ Sbjct: 209 VAIREGLL 216 >gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 198 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L +S+GK++ +I L +S +TV + + RK + R+ A+A+ R Sbjct: 135 VQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRR 194 Query: 244 NIV 246 +V Sbjct: 195 GLV 197 >gi|227114479|ref|ZP_03828135.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 242 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT E+A+ILGI +TV +I ++++K AI V Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234 >gi|222432077|gb|ACM50924.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT E+A+ILGI +TV +I ++++K AI V Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234 >gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 234 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + EGK++ +IA L ++ TV ++++ + RK R+ A+A A + I Sbjct: 173 LTPRELEVLALVGEGKSNRDIARHLVLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGI 232 Query: 246 V 246 + Sbjct: 233 I 233 >gi|148272305|ref|YP_001221866.1| LuxR family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830235|emb|CAN01168.1| putative transcriptional regulator, LuxR family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 392 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE E L ++ G + IA LGIS NTV ++A+++RK TR+ Sbjct: 336 LSAREREVLALVAGGSRNRAIATALGISENTVKFHVANLLRKMGASTRA 384 >gi|307329198|ref|ZP_07608364.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885228|gb|EFN16248.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++G T+ E+A L +S TV NY+++ ++KTA + R+ A+ A Sbjct: 130 LTAREREVLHASADGSTNAELARALHLSPGTVRNYLSTAIQKTAARNRAEAVRIA 184 >gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +L+ G I +RD + + A++ S +T RE + L ++ G T+ Sbjct: 106 ILVKHAGAIAIRDAIRSVVRTGAFRTGTPAS------STAPVTAREYDVLRLVAAGHTNP 159 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EI L +S NTV Y+ ++M+K A + R+ IA A Sbjct: 160 EIGTELNLSINTVKTYLWTVMQKLAARNRAQLIANA 195 >gi|239981448|ref|ZP_04703972.1| two-component system response regulator [Streptomyces albus J1074] gi|291453299|ref|ZP_06592689.1| two-component system response regulator [Streptomyces albus J1074] gi|291356248|gb|EFE83150.1| two-component system response regulator [Streptomyces albus J1074] Length = 137 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D L+ REV L+ ++G + EIA L +S TV NYIAS RK + R Sbjct: 85 DMPLSPREVRVLSRAAQGDSVAEIARGLCLSHGTVRNYIASATRKVGARNR 135 >gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G T+ +IA L +S TV N++ + +RK R+ + YA+ N Sbjct: 147 QLTERETEVLRLVARGLTAKQIAQRLVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENG 206 Query: 245 I 245 I Sbjct: 207 I 207 >gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 220 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L + EG ++ +I L +S TV Y++ +++KT T R+ + +A+ + Sbjct: 151 LDLTQREQQVLRLLMEGLSNAQIGEQLHLSSRTVEKYVSKLLQKTETSNRAEIVRFAMEH 210 Query: 244 NIV 246 N++ Sbjct: 211 NLL 213 >gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002] Length = 221 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Query: 179 HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H +D LT RE+E L I+ GK++ EIA L IS TV ++ ++ KT ++ R A Sbjct: 157 HINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHA 216 Query: 237 IAYA 240 + +A Sbjct: 217 VLFA 220 >gi|284009118|emb|CBA76121.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 205 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L W+S G+T +IA +LGI + T+ ++ ++++K + AI A Sbjct: 141 LSSRENEILYWVSIGRTYQDIAKMLGIKQGTIKFHMGNVVKKLGVSSTKHAIKLATE 197 >gi|222432075|gb|ACM50923.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT E+A+ILGI +TV +I ++++K AI V Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234 >gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 244 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 174 KSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++Y +H +D +T RE+E L W +EGK+ +I++++ IS TV ++ S K Sbjct: 167 RAYKLHAKEDEIDLNAITKREIEALEWSAEGKSLADISILMRISVETVKAHLDSARYKLC 226 Query: 230 TKTRSGAIAYAVRNNIV 246 R A+ A+R ++ Sbjct: 227 ALNRVHAVTKAIRAGLI 243 >gi|297199299|ref|ZP_06916696.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717164|gb|EDY61198.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 210 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE + L ++G T +IA L +S +TV NY++S + KT T+ R A+ A Sbjct: 150 LTGRECDVLRASTDGATVADIADRLHLSESTVRNYLSSAIGKTGTRNRMEAVRAA 204 >gi|324999047|ref|ZP_08120159.1| transcriptional regulatory protein DegU [Pseudonocardia sp. P1] Length = 220 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE E L + G ++ +A L I TV +++ S++RK R+ A+A A Sbjct: 154 GARLGLTHRESEVLALLVAGHSNRSVAAELVIGEETVKSHVRSVLRKLDVPDRTAAVAAA 213 Query: 241 VRNNI 245 +R + Sbjct: 214 LREGV 218 >gi|311900106|dbj|BAJ32514.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 244 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D+ + REV+ L +++G + EIAV L S T+ N I ++ + + R+ A+AYA+R Sbjct: 181 DYGMLPREVDVLRLVADGMDTGEIAVKLLYSERTIKNIIHTVTTRFQLRNRAHAVAYALR 240 Query: 243 NNIV 246 + Sbjct: 241 EGYI 244 >gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 221 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG +++ I ILGIS TV + A+IM+K + + YA+R + Sbjct: 159 LSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLVMYAIRAGL 218 Query: 246 V 246 + Sbjct: 219 I 219 >gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 203 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 WG + + LT RE + L EG+T+ E+A LG+S TV NY++ M K R Sbjct: 136 WGSEVDPLTERERQILLRAGEGRTTAEVARELGLSEGTVRNYLSEAMSKLGAVNR 190 >gi|265751338|ref|ZP_06087401.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|263238234|gb|EEZ23684.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 197 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L I++G + EIA L IS TV ++ +I K K+ SG YAV Sbjct: 129 EHELSIREIEVLILITKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVM 188 Query: 243 NNIV 246 N + Sbjct: 189 NGYI 192 >gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 220 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+ L ++ G TS EIAV +GI+ TV ++ +I K ++R A+A A+ I Sbjct: 156 ITERELFVLQAVARGCTSKEIAVDMGIAERTVKAHLTNIYSKLKVESRPQAVAVAIEQGI 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 218 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELTGRE++ + + G T+ EI L +S +TV ++AS+ +K + R A+A RN Sbjct: 153 ELTGRELDVVRAAARGLTNSEIGAELYLSLSTVKTHLASVQQKLGVRNRVEIAAWAWRNG 212 Query: 245 IV 246 I+ Sbjct: 213 IM 214 >gi|237708501|ref|ZP_04538982.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237723973|ref|ZP_04554454.1| transcriptional regulator [Bacteroides sp. D4] gi|229437637|gb|EEO47714.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229457430|gb|EEO63151.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] Length = 206 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L I++G + EIA L IS TV ++ +I K K+ SG YAV Sbjct: 138 EHELSIREIEVLILITKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVM 197 Query: 243 NNIV 246 N + Sbjct: 198 NGYI 201 >gi|31790496|emb|CAD56673.1| putative regulatory protein [Citrobacter freundii] Length = 216 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 VLRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213 >gi|85706357|ref|ZP_01037451.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217] gi|85669130|gb|EAQ23997.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217] Length = 216 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L + +G T+ +I+ LG+S NTV Y+ +I +K +R GAIA Sbjct: 157 LTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIA 209 >gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 238 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 177 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 236 Query: 246 V 246 + Sbjct: 237 I 237 >gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Query: 164 LLAAYQANMFKSYDVH----WGKD----FELTGREVECLTWISEGKTSDEIAVILGISRN 215 L AA A + + H W K+ ELT RE E L ++ G T+D+I+ L +SR+ Sbjct: 128 LSAAATAALMGRFQAHAPRNWAKETERLAELTPREREMLVLVASGLTNDDISERLQLSRH 187 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ M K R+ + A + +V Sbjct: 188 TVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218 >gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18] gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140] gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18] gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1] gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1] gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae PID1] gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae PID1] Length = 218 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L ++ G+++D++A L +SR TV ++A + K +R+ A+A A + Sbjct: 144 LALTRRELEVLELVARGRSNDDVARELFLSRATVKTHLAHVYDKLGVDSRTAAVAVARQR 203 Query: 244 NIV 246 ++ Sbjct: 204 GLL 206 >gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] Length = 218 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 240 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 38/56 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + RE+E L + ++G TS EIA+ + ++++TV+ ++ +I++K + + AIA AV Sbjct: 182 FSNRELEVLRYTADGMTSSEIALTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAV 237 >gi|251795472|ref|YP_003010203.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|304408019|ref|ZP_07389669.1| transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|247543098|gb|ACT00117.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] gi|304343038|gb|EFM08882.1| transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 74 Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ ++ Sbjct: 10 FLLTHREREVFELLVQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIK 68 >gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090] gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02] gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11] gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679] gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035] gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2] gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional response regulator [Neisseria gonorrhoeae FA 1090] gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107] Length = 218 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579] gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L] gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus anthracis str. A2012] gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442] gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193] gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389] gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W] gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108] gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134] gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97] gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187] gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264] gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842] gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102] gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676] gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603] gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185] gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550] gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621] gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248] gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055] gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North America USA6153] gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B] gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum] gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94] gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI] gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579] gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L] gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193] gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442] gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389] gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W] gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108] gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134] gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97] gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187] gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264] gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842] gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102] gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621] gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550] gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185] gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603] gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676] gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248] gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI] gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis CT-43] Length = 74 Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0205] Length = 243 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N Sbjct: 181 EFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYALENG 240 Query: 245 IV 246 +V Sbjct: 241 LV 242 >gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 240 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 262 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 44/83 (53%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ A + + G+ +LT RE + L ++ G+++ EIA L I+ TV ++++ Sbjct: 137 LIHAVRHGPRPEVPIAKGRLEDLTERERDILVAVASGRSNAEIAAQLSIATTTVKSHVSR 196 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ +A + +V Sbjct: 197 ILTKIGARARVQAVVFAYESGLV 219 >gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE++ L +++G+++ EIA L + T ++A+I+ K R+ AI AVR Sbjct: 148 QLSPRELDVLKLVAKGRSNKEIAAELHVVEGTAKIHVANILTKLGVSDRTQAIVVAVRRG 207 Query: 245 IV 246 I+ Sbjct: 208 II 209 >gi|170720829|ref|YP_001748517.1| two component LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169758832|gb|ACA72148.1| two component transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 219 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L I GK++ EIA L +S TV + + IM++ +G + +AVR I Sbjct: 155 LTARQLEILRLIVRGKSTREIAAGLALSIKTVETHRSQIMKRLQIYDVAGLVLFAVREKI 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|27382083|ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355253|dbj|BAC52237.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 GL+ AY N + +LT RE + L + G + IA LG+S +TV +I Sbjct: 163 GLVPAYLINEGARVAIDRRSVTDLTPREQQVLAELELGLPNKLIAAKLGLSESTVKMHIQ 222 Query: 223 SIMRKTATKTRSGAI 237 IMRK A R+ A+ Sbjct: 223 HIMRKCAAHNRTEAV 237 >gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)] gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor A3(2)] Length = 210 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 144 GRAGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 203 Query: 241 VRNNI 245 VR+ + Sbjct: 204 VRHGV 208 >gi|17549798|ref|NP_523138.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17432053|emb|CAD18730.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 252 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE E I +GK++ EIA+++ S NTV +Y++SIM KT + R Sbjct: 183 LSEREREVALLIGQGKSNAEIALLVCKSENTVKHYLSSIMDKTGCENR 230 >gi|284032390|ref|YP_003382321.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811683|gb|ADB33522.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 228 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GR +E + I+ G+T+ EIA L IS +TV +++A+I K + R+ +A N+ Sbjct: 154 ELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLAAIQAKLGVRNRTEIAVWAWENH 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 240 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 210 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 37/76 (48%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N+ V +L+ RE E L + EG ++ EIA L +S NT+ ++ IM K A Sbjct: 135 NLKPPTPVSTASIGQLSQRESEVLKLMVEGYSNPEIAAALYLSPNTIKTHVRGIMNKLAV 194 Query: 231 KTRSGAIAYAVRNNIV 246 R A A+R +V Sbjct: 195 DDRVQAAVVALRAGLV 210 >gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis 8013] gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria meningitidis alpha710] gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis N1568] Length = 218 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19] gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332] gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae PID332] gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae PID332] Length = 218 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|239930001|ref|ZP_04686954.1| two component transcriptional regulator, LuxR family protein [Streptomyces ghanaensis ATCC 14672] Length = 209 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT REVE L ++EG + +IA +S TV NY+ +I+ K + R A+ A Sbjct: 145 DSPLTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARD 204 Query: 243 NN 244 N Sbjct: 205 NG 206 >gi|254521643|ref|ZP_05133698.1| regulatory protein, LuxR:Response regulator receiver [Stenotrophomonas sp. SKA14] gi|219719234|gb|EED37759.1| regulatory protein, LuxR:Response regulator receiver [Stenotrophomonas sp. SKA14] Length = 225 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 7/88 (7%) Query: 166 AAYQANMFKSYDVH-------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 AA + + S DV G + LT RE E L I+EG + EIA L SR T++ Sbjct: 121 AARKGEGYLSADVERQLASRPEGGEAHLTKREAEVLRLIAEGLSQTEIAAQLQRSRQTIS 180 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 S MRK + + YAV+ +V Sbjct: 181 TQKHSAMRKLGMQRPAEIFEYAVQTGMV 208 >gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 238 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +++ RD++ E+ + A + + DV + L+ RE E L W + GKT +I I Sbjct: 139 KLLTRDKISELQMAAVHLHDSVMQSDVLSRALRRPSLSARETEVLQWTAIGKTQQDIGDI 198 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV ++ S K T A+ A+ I+ Sbjct: 199 LSISHRTVEVHMRSAREKLGALTTIQAVGRAIGYQII 235 >gi|86606978|ref|YP_475741.1| LuxR family transcriptional regulator [Synechococcus sp. JA-3-3Ab] gi|86555520|gb|ABD00478.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 87 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 181 GKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 G D+ L+ RE++ L I+ G T+ +IA L IS+ TV+N+I++I+ KT T R Sbjct: 2 GADYHSADLLSERELQVLELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTSNRVAL 61 Query: 237 IAYAVR 242 + +A++ Sbjct: 62 VRWALQ 67 >gi|56697420|ref|YP_167788.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56679157|gb|AAV95823.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 216 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ E+A+ L IS TV + +I RK + +G YA+ + + Sbjct: 149 LTGREQTILLQLAQGKSNKEVAIALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|302557514|ref|ZP_07309856.1| LuxR family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475132|gb|EFL38225.1| LuxR family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 144 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 36/76 (47%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QA + + LT REV+ L ++ G T+ A LG++ TV Y+ S MRK Sbjct: 66 QACALLTAETAPSVTVRLTPREVDVLACVAAGATNGVAAERLGVTAETVKAYLRSAMRKL 125 Query: 229 ATKTRSGAIAYAVRNN 244 +TR A+ A R Sbjct: 126 GVRTRGQAVVAARRAG 141 >gi|292491684|ref|YP_003527123.1| LuxR family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291580279|gb|ADE14736.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4] Length = 229 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 44/93 (47%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 P + +L RLW Y K + + LT RE E + + +G+ + IA Sbjct: 129 PWQKSVLLKRLWACMEKDQYARENKKKQEEIIARMARLTPREWEVMELVVKGRLNKVIAF 188 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LGIS TV N+ A +M+K KT++ I A+ Sbjct: 189 ELGISLKTVENHRAQVMKKLQVKTQADLIRLAL 221 >gi|288918024|ref|ZP_06412382.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350542|gb|EFC84761.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 282 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F L+ RE++ L ++EG ++ E A L +S TV Y+ SIM K R+ A+ A Sbjct: 217 QPFGLSPRELDVLRLVAEGMSNAETARRLAVSPETVKAYLRSIMNKLGVHNRTAAVNVAR 276 Query: 242 RNNIV 246 R++++ Sbjct: 277 RSSLL 281 >gi|269836626|ref|YP_003318854.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785889|gb|ACZ38032.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 1034 Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++EG T E+A L IS TV ++ SI K +R+ A ++A + + Sbjct: 973 LSAREIEVLRLVAEGLTDAEVAERLSISPRTVGGHLQSIYNKLGISSRTAATSFAHKFGL 1032 Query: 246 V 246 V Sbjct: 1033 V 1033 >gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 218 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G ++ EIA L +S TV ++ A IM K +TR + YA++ Sbjct: 155 LTDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRTRPDLVRYAIKKG 213 >gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465] gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066] gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465] Length = 74 Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa] Length = 239 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q+ +++ K LT RE E L W + GKTS EI+VI S VN ++ +I R Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A AV ++ Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237 >gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida] Length = 238 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 42/244 (17%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP------F 84 D L R+ ++ W + LT +G S+FL+ + ++ SD+P + Sbjct: 7 DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66 Query: 85 D----------LVRCMA-----LSEKDKYYNVLQRPTE---LFCPVFHTLPENIT----P 122 D + C+ L ++D Y +RP+E H L + + Sbjct: 67 DAESYAAVDPVVQHCLNANRPLLWDRDNY----RRPSESEFFEEAAAHGLQQGLALPLHG 122 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 P G C F+ M+ +LRD E G+L +A + S VH Sbjct: 123 PRGEAGMLCLKPFESGPRATATMIESLPMATLLRDYAME-GML---KARIECSTPVH--- 175 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L W + GKT+ EI++IL + + ++ + +I RK +R A+ A++ Sbjct: 176 ---LTSREKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQ 232 Query: 243 NNIV 246 + Sbjct: 233 QKSI 236 >gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 214 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 172 MFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + D H G + LT RE E L I++G+++ EIA L +S TV ++++I+ K Sbjct: 137 LLAQEDSHGGTGRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLD 196 Query: 230 TKTRSGAIAYAVRNNI 245 R+ A +AVR+ + Sbjct: 197 LADRTQAALWAVRHGL 212 >gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 232 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L ++EG +S EIA +L IS TV + A++++K + R YA+R + Sbjct: 170 ITEREEEILKLVAEGHSSKEIAELLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGL 229 Query: 246 V 246 + Sbjct: 230 I 230 >gi|149922983|ref|ZP_01911402.1| response regulator receiver [Plesiocystis pacifica SIR-1] gi|149816169|gb|EDM75678.1| response regulator receiver [Plesiocystis pacifica SIR-1] Length = 371 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT R+ E W+S GKT+ EI+ IL I TV ++ I+ + + R+GA Sbjct: 309 LTPRQAEVALWMSCGKTNAEISTILSIRPATVKKHVERILDRLGVENRTGA 359 >gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 234 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|15895522|ref|NP_348871.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025256|gb|AAK80211.1|AE007726_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325509670|gb|ADZ21306.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 213 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE+E ++ GK++ EI+ L IS TV NYI+ I++K + R+ +A Sbjct: 154 LTEREMEITKLVTSGKSNKEISETLFISEGTVKNYISKILKKLKLQRRTQLLA 206 >gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 74 Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLR 68 >gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 213 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE + L I G + E+A L +S NTV +YI I RK +R+ A +A R Sbjct: 146 DDDLTARERDVLALIGRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHATR 205 Query: 243 NNI 245 + Sbjct: 206 MGL 208 >gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 165 LAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA A + +V G L+ RE+E L+ +S+G T+ EIA +L +S+ TV +I Sbjct: 146 LAGKMAPLAGGAEVQAGPTVGAPPLSAREIEILSLVSKGLTNREIAEVLSLSKLTVECHI 205 Query: 222 ASIMRKTATKTRSGAI 237 + +K A +R+ A+ Sbjct: 206 RNSYKKLAVHSRTQAV 221 >gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 214 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G+D +L+ RE+E L ++ G + EIA L ++ TV ++ I+ K K R+ A+ Sbjct: 146 HAGED-DLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRILSKLGAKDRTHAVL 204 Query: 239 YAVRNNIV 246 A++ I+ Sbjct: 205 LALKRGIL 212 >gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] Length = 192 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +EG EIA L ++ TV N+++++MRKT T+ R A+ A R+ Sbjct: 132 LTRREAEVLRAAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQARRHG 190 >gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24] gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24] gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24] Length = 213 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 147 GRAGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206 Query: 241 VRNNI 245 VR+ + Sbjct: 207 VRHGV 211 >gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] Length = 206 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D++++ RE+E + I++G ++ EIA L +S TV NY++SI+ K + R+ + Sbjct: 144 EDYDISERELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSILDKLDLRDRTQVAVFYY 203 Query: 242 RNN 244 R+ Sbjct: 204 RHK 206 >gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G+ + EIA ++ +S TV ++ S+ K R+ A+A A+R + Sbjct: 154 LTPRELEVLGHVAAGRGAPEIARLIHLSPATVKGHLQSLYEKLGVSDRAAAVAEAMRRGL 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|269956981|ref|YP_003326770.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305662|gb|ACZ31212.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 937 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L ++EG T+ +IA L IS TV+ ++++I+RK +R+ A VR Sbjct: 879 LTAREEQVLALVAEGLTNGQIAARLFISVKTVSVHVSAILRKLGVSSRTEAALKGVR 935 >gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 213 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE++ L +++GKT+ EI L +S TV N ++ I+ K R+ A AY V Sbjct: 151 LTNREMDILDLVAKGKTNSEIGEELHLSEKTVRNQLSRILNKLDLNNRTQAAAYYV 206 >gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 253 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L RE+ECL + G S+ I L +S +TVN Y+ S K R AIA ++R Sbjct: 191 KLNEREIECLQLVGNGMKSEAIGERLNLSVHTVNAYLGSATTKLDAVNRIQAIAKSIRLG 250 Query: 245 IV 246 I+ Sbjct: 251 II 252 >gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response regulator [Neisseria meningitidis 053442] gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria meningitidis 053442] gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria meningitidis alpha275] Length = 218 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|149201851|ref|ZP_01878825.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035] gi|149144899|gb|EDM32928.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035] Length = 213 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L + +G T+ +I+ LG+S NTV Y+ +I +K +R GAIA Sbjct: 154 LTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIA 206 >gi|226308732|ref|YP_002768692.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226187849|dbj|BAH35953.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 511 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E LT + T+DEIA LGI+ TV +I SI RK R A+ A Sbjct: 434 LTERENEILTLLRTTMTADEIAAHLGIAYPTVKTHIRSIYRKLGVAKRRAAVQAA 488 >gi|225018320|ref|ZP_03707512.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum DSM 5476] gi|224948920|gb|EEG30129.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum DSM 5476] Length = 206 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E + I+EG ++ EIA L +S TV N+I+ I+ KT + R+ + ++ N Sbjct: 148 LTPREMEVVALIAEGLSNKEIAERLFLSNGTVRNHISVILEKTGLEHRTQIAVHFLKGN 206 >gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] Length = 200 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G+D +L+ RE+E L ++ G + EIA L ++ TV ++ I+ K K R+ A+ Sbjct: 132 HAGED-DLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRILSKLGAKDRTHAVL 190 Query: 239 YAVRNNIV 246 A++ I+ Sbjct: 191 LALKRGIL 198 >gi|312138951|ref|YP_004006287.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311888290|emb|CBH47602.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 214 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 35/67 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G ELT +E L + EG T+ +IA + ++ TV NY++ ++ K + R+ A Sbjct: 136 QPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLEKLGVERRAQAAV 195 Query: 239 YAVRNNI 245 A R+ + Sbjct: 196 LAARSGL 202 >gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis 5-1] gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis 5-1] Length = 257 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N Sbjct: 194 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 253 Query: 245 IV 246 +V Sbjct: 254 LV 255 >gi|261880311|ref|ZP_06006738.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333001|gb|EFA43787.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 318 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+GRE + + + +G T+ EIA L IS NTV + +I RK + +G YA Sbjct: 246 GSQENLSGREKDVIIALVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYA 305 Query: 241 VRNNIV 246 + NN+V Sbjct: 306 IVNNLV 311 >gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 239 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W + GKT+ E A I+ +S +TVN+++ + K ++ A+A A+R + Sbjct: 177 LSRREKEVLKWAAVGKTAWETAQIMTVSNSTVNHHLYNACAKLDVANKTHAVAKAIRAQL 236 Query: 246 V 246 + Sbjct: 237 I 237 >gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1] gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1] Length = 225 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS TV N++++I++K R+ A+ ++N Sbjct: 162 LTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTGIKN 219 >gi|94971093|ref|YP_593141.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553143|gb|ABF43067.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 233 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT R+ E L ++EGK E+A IL ++ TV + IM TK + + YAVRN Sbjct: 170 KLTDRQREVLQLLAEGKGMKEVAAILNMTTRTVAFHKYRIMEVLGTKNNADLVKYAVRNR 229 Query: 245 I 245 + Sbjct: 230 M 230 >gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58] gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis MC58] gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis CU385] Length = 218 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 217 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + + I+EG ++ EIA L IS TV+ + A+I+ K + R YA+R + Sbjct: 155 LTPREADVVKLIAEGHSAQEIADCLSISPRTVDRHRANILEKLDLRDRVDLTRYAIRAGL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|258652113|ref|YP_003201269.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555338|gb|ACV78280.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G + EIA L S+ TV N + + + + RS A+AYAVR + Sbjct: 170 LSDREAEVLKLVANGHDTAEIAGRLSYSQRTVKNILHDVTTRLQLRNRSHAVAYAVREGL 229 Query: 246 V 246 + Sbjct: 230 I 230 >gi|148977874|ref|ZP_01814429.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145962943|gb|EDK28214.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 203 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 140 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 199 Query: 243 N 243 N Sbjct: 200 N 200 >gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911] gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911] Length = 74 Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|229010418|ref|ZP_04167622.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048] gi|229165953|ref|ZP_04293718.1| Sensory transduction protein ydfI [Bacillus cereus AH621] gi|228617506|gb|EEK74566.1| Sensory transduction protein ydfI [Bacillus cereus AH621] gi|228750838|gb|EEM00660.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048] Length = 161 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +VH K E LT +E+ L I+ G + EIA +GI+ TV Y+ +I K Sbjct: 84 YKRKEVHADKVAENNLTVKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGV 143 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 144 NSRSEAVAVSIERKLI 159 >gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica ST-640] gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria lactamica 020-06] Length = 218 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 211 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L RE + L I+EG T+ +IA + +S TV NY+++I+ K +R+ A +A R Sbjct: 152 LGARERQILRLIAEGMTNRQIAACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAAR 208 >gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] Length = 261 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N Sbjct: 198 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 257 Query: 245 IV 246 +V Sbjct: 258 LV 259 >gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16] gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 235 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 35/52 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE+E L+ + +G T+ EIA +L +SR TV +I +I +K A +R+ A+ Sbjct: 174 LSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHSRTQAV 225 >gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 240 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|319789390|ref|YP_004151023.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans HB-1] gi|317113892|gb|ADU96382.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans HB-1] Length = 193 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L+ + EGKT+ EIA LGIS TV YI +++K R ++ R Sbjct: 129 LSDRELKVLSLLVEGKTNKEIARELGISEQTVKYYINQLLKKANCSNRVNLVSLFSR 185 >gi|313499034|gb|ADR60400.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 127 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L W+++G T+ EIA + +S TV N I + + K R A+ A+R I Sbjct: 17 LAPRELEALLWVAQGLTTKEIARQMAVSPGTVANRIEAALFKLEAGRRIEAVTKAMRQQI 76 Query: 246 V 246 + Sbjct: 77 I 77 >gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana] Length = 245 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIAVILGI +TV +I ++++K AI V Sbjct: 180 FSQRENEILYWASIGKTYPEIAVILGIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236 >gi|304406993|ref|ZP_07388647.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343980|gb|EFM09820.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 200 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W LT RE E L + SEG ++ EIA + ++ TV NY++ +RK K R AI+ Sbjct: 133 WEAGNPLTEREQEVLRYASEGLSAREIAARVHLTAGTVRNYMSESIRKLEAKNRIDAISI 192 Query: 240 AVRNN 244 A Sbjct: 193 ATHKG 197 >gi|256785392|ref|ZP_05523823.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769288|ref|ZP_06528666.1| two-component system response regulator [Streptomyces lividans TK24] gi|289699487|gb|EFD66916.1| two-component system response regulator [Streptomyces lividans TK24] Length = 204 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++G T+ E+A L +S+ TV NY+++ ++K A + R+ A+ A RN Sbjct: 144 LTDREREILRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVA-RNK 201 >gi|167761739|ref|ZP_02433866.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC 43183] gi|167700375|gb|EDS16954.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC 43183] Length = 206 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I++G + EIA L IS TV + +I+ K K+ SG YAV + Sbjct: 140 ELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVMHG 199 Query: 245 IV 246 + Sbjct: 200 YI 201 >gi|163747813|ref|ZP_02155152.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161378921|gb|EDQ03351.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 186 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 KD ELT RE++ LT ++EGK + IA LG+S +TV +I ++ K R+ A Sbjct: 117 AKD-ELTNREMQVLTCVAEGKQNKVIANSLGLSEHTVKLHIHHVISKLGVNNRTEA 171 >gi|68535964|ref|YP_250669.1| two-component system response regulator TcsR2 [Corynebacterium jeikeium K411] gi|68263563|emb|CAI37051.1| two-component system response regulator TcsR2 [Corynebacterium jeikeium K411] Length = 200 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 32/62 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E + EGK+S IA L +S TV N+I+SIM KT R A A Sbjct: 137 DNPLSERETEVCQQLFEGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKT 196 Query: 243 NN 244 N Sbjct: 197 NG 198 >gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 240 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 240 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|304413627|ref|ZP_07395071.1| DNA-binding HTH domain-containing protein invovled in quorum sensing [Candidatus Regiella insecticola LSR1] gi|304283718|gb|EFL92112.1| DNA-binding HTH domain-containing protein invovled in quorum sensing [Candidatus Regiella insecticola LSR1] Length = 252 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 33/66 (50%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K + + RE E L W S GKT EIA+I GI TV ++ +I++K AI Sbjct: 184 SKKEKFSSRENEVLYWFSMGKTYSEIAIIFGIKLGTVKFHMGNIVKKLGVLNAKHAIRLG 243 Query: 241 VRNNIV 246 + ++ Sbjct: 244 TESQLI 249 >gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L ++EG +S EIA +L IS TV + A++++K + R YA+R + Sbjct: 168 ITEREEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGL 227 Query: 246 V 246 + Sbjct: 228 I 228 >gi|238796231|ref|ZP_04639741.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] gi|238719924|gb|EEQ11730.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] Length = 123 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 RE E L W S GKT EI++ILGI TV +I ++++K AI V Sbjct: 61 RENEILYWASNGKTYQEISLILGIKTGTVKFHIGNVVKKLGVLNAKHAIKLGV 113 >gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942] gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942] Length = 199 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L +++GK + EIA L I TV NYI+ I+ K K R AI Sbjct: 138 LTEREKEVLELVADGKNTKEIANELSIKSGTVRNYISMILDKLEVKNRIEAI 189 >gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ I Sbjct: 153 LTEREREVLALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212 >gi|288800041|ref|ZP_06405500.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333289|gb|EFC71768.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] Length = 200 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L+ + +G + EIA IL IS TV + +I+ K K+ S YAV + Sbjct: 135 LTDREIEVLSLLVQGHINKEIATILHISLTTVITHRKNIVEKLGMKSVSALTIYAVTHGY 194 Query: 246 V 246 V Sbjct: 195 V 195 >gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] Length = 248 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L WI++GK++ +A I+GISR+TV+ + K R+ A + + Sbjct: 180 LSPRELEVLRWIAQGKSNSVMADIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISAGL 239 Query: 246 V 246 + Sbjct: 240 L 240 >gi|188990306|ref|YP_001902316.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732066|emb|CAP50258.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 921 Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 37/58 (63%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R GA+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSREGALAQALQRGLL 909 >gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 208 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + G+++ EIA+ L I+ TV ++ +I+ K R+ A++ AVR + Sbjct: 145 LTPRELEVLHLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAVSIAVRQQL 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905] gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905] gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 215 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +++GK++ EIA L ++ TV +I++I K + R+ A YAV++ + Sbjct: 150 LTPREQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 212 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 42/68 (61%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + ++ ELT E + + +++ G ++ EIA +LG+S+ TV +++++++ KT R+ Sbjct: 140 IKLDREIELTPTETKVIQYVARGLSNREIAEVLGVSQRTVESHVSNMLGKTGLHNRTELA 199 Query: 238 AYAVRNNI 245 +A+ + + Sbjct: 200 RWAIESGL 207 >gi|21232702|ref|NP_638619.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767223|ref|YP_241985.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21114513|gb|AAM42543.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572555|gb|AAY47965.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 921 Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 37/58 (63%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R GA+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSREGALAQALQRGLL 909 >gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 87 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 12 LSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRVALVRWALQ 68 >gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13] Length = 64 Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 2 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 58 >gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 234 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|262200493|ref|YP_003271701.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083840|gb|ACY19808.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 271 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F LT E L ++ G T+D+IA +L +S NTV + SI RK TR A+ A Sbjct: 207 EQFHLTPSERRVLDFLPSGYTADQIAGMLSVSVNTVKTHSRSIYRKLQVSTRRDAVMVAR 266 Query: 242 RNNIV 246 R ++ Sbjct: 267 RAGLL 271 >gi|163858475|ref|YP_001632773.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163262203|emb|CAP44505.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 269 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT R++E W+++GK+++ IA + +S +TV ++ +I K T +R Sbjct: 191 LTQRQIETAVWLAQGKSNEAIAAAMNVSLDTVKAHLKAIFNKIGTNSR 238 >gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1] gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1] Length = 216 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L + EG T+ EI+ L I T ++++I+ K R+ A YA RN Sbjct: 149 DLTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNILSKLGVADRTQAAIYANRNG 208 Query: 245 IV 246 I+ Sbjct: 209 IL 210 >gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 217 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L + G ++ EIA L +S TV N+I I RK +TR+ AIA Sbjct: 155 LTEREAEVLEAAARGLSNAEIAKELFLSEKTVKNHINRIFRKLGVRTRAAAIA 207 >gi|56964425|ref|YP_176156.1| transcriptional regulator of spore coat protein [Bacillus clausii KSM-K16] gi|56910668|dbj|BAD65195.1| transcriptional regulator of spore coat protein [Bacillus clausii KSM-K16] Length = 74 Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 181 GKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 G DF LT RE E + + +T+ EIA L IS TV N+I++ M+K K RS A Sbjct: 3 GADFGPKPLLTKREREVFELLVQDQTTKEIANHLFISEKTVRNHISNTMQKLGVKGRSQA 62 Query: 237 IAYAVR 242 + +R Sbjct: 63 VIELIR 68 >gi|152965549|ref|YP_001361333.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360066|gb|ABS03069.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 200 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ G D L+ RE+E L +++G+++ + LG+S TV +++A I RK T Sbjct: 127 FEGRGGENGVD-SLSEREIEVLQHVADGRSNKDTGAALGLSALTVKSHLARIARKLGTGD 185 Query: 233 RSGAIAYAVRNNIV 246 R+ +A +R ++ Sbjct: 186 RAEMVAITLRAGVI 199 >gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240355] Length = 218 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 240 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 218 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +++ RE E L I+ GK + EIA LGIS TV + +++ K R+ A + +R Sbjct: 146 DVSDREREVLQLIARGKANKEIAAALGISEETVKRHASNLFVKMGVADRAQATSEGIRRG 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 232 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L ++EG +S EIA +L IS TV + A++++K + R YA+R + Sbjct: 170 ITEREEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGL 229 Query: 246 V 246 + Sbjct: 230 I 230 >gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 218 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 154 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213 Query: 245 I 245 I Sbjct: 214 I 214 >gi|260578669|ref|ZP_05846577.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603166|gb|EEW16435.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 200 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 32/62 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E + EGK+S IA L +S TV N+I+SIM KT R A A Sbjct: 137 DNPLSERETEVCQQLFEGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKT 196 Query: 243 NN 244 N Sbjct: 197 NG 198 >gi|271967578|ref|YP_003341774.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510753|gb|ACZ89031.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + + ++ G T+ EIA L +S TV N+IAS+ KT T+ R A+A Sbjct: 147 LTEREDQIVAMVAHGMTNAEIAAELFLSPGTVKNHIASVQNKTGTRNRVAIAAWA 201 >gi|332668711|ref|YP_004451718.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337748|gb|AEE44331.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 207 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L +++G + EIA L S TV N + + + + RS A+AYA+R + Sbjct: 147 LASREIEVLKLVADGYDTAEIAQHLSYSERTVKNVLHDVTTRLQLRNRSHAVAYALREGL 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein [gamma proteobacterium IMCC2047] Length = 151 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 143 GLMLLFPKGRII--LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 G+ LF KG + +R++L I Y A+ F + LT RE++ L I G Sbjct: 41 GVEGLFSKGSPVDQMREKLPLISQGGRYVASEFLELIQQGQQVSALTDRELQVLNMIVAG 100 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 K + EIA L IS TV+ + S+M K + + +A A+++ ++ Sbjct: 101 KINKEIAEALFISPKTVDKHRTSLMSKLEVHSVAQLLARALKDGLI 146 >gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 213 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 147 GRAGTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWA 206 Query: 241 VRNNI 245 VR+ + Sbjct: 207 VRHGV 211 >gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis 961-5945] gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis G2136] Length = 218 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M13399] gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M04-240196] Length = 218 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] Length = 218 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|333026198|ref|ZP_08454262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746050|gb|EGJ76491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE + L +S+G + +IA L IS TV ++ + +K TR+GA+A A Sbjct: 143 ELTPRERDILAQLSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVA 198 >gi|326332686|ref|ZP_08198949.1| putative transcriptional regulatory protein DegU [Nocardioidaceae bacterium Broad-1] gi|325949514|gb|EGD41591.1| putative transcriptional regulatory protein DegU [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT REVE L I++G ++ +IA L +S NT+ ++I RK TRS A+++A+ + Sbjct: 131 LTTREVEVLALITQGLSNADIAEKLVVSVNTLKSHIRQAYRKIEVTTRSQAVSWAITHG 189 >gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis WUE 2594] Length = 218 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] Length = 237 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G S +IA LG+S TV+N++A+ +RK R +A+ N + Sbjct: 177 LTPRESEVLRMVAKGLASKQIASRLGLSSRTVDNHVAATLRKLHLANRVELTRFALENGL 236 >gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 225 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 178 VHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 V G D +T RE E L ++EG +S EIA +L IS TV + A++++K + R Sbjct: 152 VREGGDVPARAITEREEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRL 211 Query: 235 GAIAYAVRNNIV 246 YA+R ++ Sbjct: 212 ELTRYAIRAGLI 223 >gi|262374576|ref|ZP_06067850.1| nitrate/nitrite response regulator [Acinetobacter junii SH205] gi|262310572|gb|EEY91662.1| nitrate/nitrite response regulator [Acinetobacter junii SH205] Length = 219 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 RIILR L LA A + ++ + LT RE++ + ISEG ++ IA L Sbjct: 126 RIILRGELVISPSLAPILAQILRTPSIE-DISSNLTSRELQVIQMISEGLSNKMIAHKLS 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 I+ +TV ++ I+ KT +TR A + V + Sbjct: 185 ITESTVKVHVKHILNKTGLRTRVEAAVWTVNH 216 >gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 214 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELTGRE++ L +++G+++ EIA L ++ TV ++A I+ K + R A+ A R Sbjct: 151 ELTGRELDVLRCLADGRSNAEIAGELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCG 210 Query: 245 I 245 + Sbjct: 211 L 211 >gi|227891992|ref|ZP_04009797.1| two-component response regulator [Lactobacillus salivarius ATCC 11741] gi|227866196|gb|EEJ73617.1| two-component response regulator [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L + ++ E+A +S T+ NYI+SI+ KT T++R A+ A + Sbjct: 138 DNPLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197 Query: 243 NN 244 N Sbjct: 198 RN 199 >gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L +++G+ ++EIA IL +S TV N++++I K R+ AI A Sbjct: 149 ELTEREREVLELVAQGRGNNEIAGILFLSGKTVRNHVSNIFMKLQVADRAQAIVRA 204 >gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074] gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074] gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 147 GRAGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206 Query: 241 VRNNI 245 VR+ + Sbjct: 207 VRHGL 211 >gi|261405324|ref|YP_003241565.1| LuxR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|315645684|ref|ZP_07898808.1| transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|261281787|gb|ACX63758.1| transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|315279162|gb|EFU42472.1| transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 74 Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ ++ Sbjct: 10 FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIK 68 >gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 234 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 224 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L + + KT+ +IA IL I TV ++++I+ K + R+ A YAV++ Sbjct: 148 DLTIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLEDRTQAAVYAVKHG 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|226227636|ref|YP_002761742.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090827|dbj|BAH39272.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 223 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G T+ IA LGISR TV + S+MRK + +G +A+ I Sbjct: 160 LTPRERDVLAGVARGLTNKAIAAELGISRRTVEAHRESLMRKLQIHSVAGLTRFALETGI 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514] Length = 122 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H + EL+ RE E L ++ G EIA L IS TVN YI + K ++ Sbjct: 41 FQQTRPHASEADELSNREQEVLDLLARGYLYKEIAENLNISVATVNTYIRRVYEKLHVRS 100 Query: 233 RSGAIAYAVR 242 R+ A+A R Sbjct: 101 RAQAVAKYTR 110 >gi|77408114|ref|ZP_00784861.1| response regulator [Streptococcus agalactiae COH1] gi|77173298|gb|EAO76420.1| response regulator [Streptococcus agalactiae COH1] Length = 196 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E++ L+ I++GKTS EIA L +S TV NY ++I K R A+ A Sbjct: 136 LSKQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190 >gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus pseudintermedius ED99] Length = 209 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L IS+G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++ + Sbjct: 148 LTEREMEILLLISKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 211 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L ++G +S EIA L IS TV ++ASI K K ++ A+ A+R + Sbjct: 144 ISPREREVLVQAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYGL 203 Query: 246 V 246 V Sbjct: 204 V 204 >gi|258647693|ref|ZP_05735162.1| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] gi|260852526|gb|EEX72395.1| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] Length = 315 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K+ EL+ RE + + I +G ++ EIA L IS NTV + +I RK T +G YA Sbjct: 243 NKEEELSARERDVIISIVQGMSNKEIAEHLCISTNTVITHRRNIARKLQIHTPAGLTIYA 302 Query: 241 VRNNIV 246 + N +V Sbjct: 303 IVNGLV 308 >gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 233 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT E L I+EG T+ +I L ++ TV NYI I+ K A + R+ A A+AVR+ Sbjct: 170 LTVSEKRILELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQRRTQAAAFAVRH 227 >gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 214 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 245 I 245 I Sbjct: 210 I 210 >gi|229168156|ref|ZP_04295884.1| Response regulator receiver [Bacillus cereus AH621] gi|228615400|gb|EEK72497.1| Response regulator receiver [Bacillus cereus AH621] Length = 596 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK++ LT RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 530 GKEYGLTKRELEVLNLLSQGIRYKTIASKLYLSNGTVRNYASTLYDKLEVKNREEAVKKA 589 >gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51] gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 212 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 8/97 (8%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +GR L + +I ++ AY+ +Y+ LT RE E L +++G T++EIA I Sbjct: 122 QGRSFLDPEIADI-VVNAYRQGNEDAYET-------LTEREREILILLAKGHTNNEIAPI 173 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV+ + +++M+K + ++ YA++ ++ Sbjct: 174 LNISSKTVDYHRSNLMKKLSLHSKVELTKYALKRGLI 210 >gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] Length = 210 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +SEG T+ EIA L +S TV +++ I K R+ A Y V+ + Sbjct: 149 LSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEVGDRTQASMYGVKYKL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 208 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L + EGK++ EIA L I+ TV +++ I+ K + R+ A YA ++ + Sbjct: 146 LTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDLQDRTQAAIYANKHQL 205 >gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 242 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++ G + +IA L IS NTV N++ +I+ K +R+ A YA+R Sbjct: 167 LTERETEVLRLVARGLNNRDIADRLYISDNTVKNHVRNILEKLQLHSRTEAAVYAIREK 225 >gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 240 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++G ++ EIA L +S TV +I++I+ K R+ YA+R Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIAETLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKR 210 Query: 245 IV 246 +V Sbjct: 211 LV 212 >gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 209 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G + EIA L I+ TV ++++I+ K + R+ A+ YA +N + Sbjct: 148 LTDREMEVLLCMARGLANQEIAEELFIALKTVKTHVSNILSKLEVQDRTQAVVYAFQNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 205 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE E ++ I +G ++++IA +S NTV Y+ S RK TR+ A+A+ + Sbjct: 138 KEAGLSHREAEVVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVATRAQAVAWGI 197 Query: 242 RNNI 245 N + Sbjct: 198 GNGL 201 >gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE++ L I +G+ + +IA L I+ TVN +I +I +K R+ A+ A+R Sbjct: 144 DEKLTDRELDVLKLIRDGRRNKQIASDLKIAEATVNFHIKNISQKLQANDRTHAVMIALR 203 Query: 243 NNIV 246 ++ Sbjct: 204 RGLL 207 >gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++T RE+E L ++ G ++ EIA +S TV ++ ++ KT ++ R A+ YA + Sbjct: 152 DMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVG 211 Query: 245 IV 246 +V Sbjct: 212 LV 213 >gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 203 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++G T+ EIA + +S TV NY+++ ++KTA + R+ A+ A Sbjct: 143 LTDREREVLRAAADGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVA 197 >gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 214 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EG + EIA I+ +T + + +I+RK T +R A+ +A+R+ Sbjct: 151 QLTDREREILQAIAEGLSDKEIAARFNITVDTAHKHANNILRKLDTNSRLQAVLFALRHG 210 Query: 245 IV 246 + Sbjct: 211 AI 212 >gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129] gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae] gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae] Length = 233 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D++ G LT RE E L I+ GK++ EIA L IS TV +++ ++ KT ++ R A Sbjct: 153 DINAGLIDPLTPREQEILLLIALGKSNTEIAEELFISLPTVKTHVSKVLSKTGSRDRVHA 212 Query: 237 IAYAVRNNIV 246 + +A +V Sbjct: 213 VLFAFSRGLV 222 >gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EGK+ EIA +S TV + ++MRK ++ + YA++ I Sbjct: 156 LTKREREILKMLAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQYAIQKKI 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|315181312|gb|ADT88226.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 216 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y ++F+ + H ELT RE++ L + G ++ ++A L IS TV +++ I Sbjct: 137 LLHYYRHIFQHH--HTQATIELTTRELQILRSLQTGASNMQMAESLFISEFTVKSHLYQI 194 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K + K R+ AI +A +N Sbjct: 195 FKKLSVKNRTQAITWANQN 213 >gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 223 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L +++G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLKLVAKGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 97 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 12 LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQ 68 >gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 214 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 245 I 245 I Sbjct: 210 I 210 >gi|170781840|ref|YP_001710172.1| LuxR family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169156408|emb|CAQ01556.1| putative LuxR-family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 460 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE E L ++ G + IA LGIS NTV ++A+++RK TR+ Sbjct: 404 LSAREREVLALVAGGSRNRAIATSLGISENTVKFHVANLLRKMGASTRA 452 >gi|325673773|ref|ZP_08153464.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555794|gb|EGD25465.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 211 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G ELT +E L + EG T+ +IA + ++ TV NY++ ++ K + R+ A A Sbjct: 135 GAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLEKLGVERRAQAAVLA 194 Query: 241 VRNNI 245 R+ + Sbjct: 195 ARSGL 199 >gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 199 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + LT RE + + I+EGK+++EIA L ++ TV NYI+ I+ K R A Sbjct: 129 DLAYDNKNPLTNREKQVMELIAEGKSTNEIASELYLTNGTVRNYISVILDKLDVGNRIEA 188 Query: 237 IA 238 I+ Sbjct: 189 IS 190 >gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 578 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 172 MFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +FK Y K +ELT RE++ L + EG EIA L +S TV NY +SI K Sbjct: 503 LFKEYSPMPKKPPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQV 562 Query: 231 KTRSGAIAYAV 241 R A+ A+ Sbjct: 563 SGRGEAVKKAL 573 >gi|284032378|ref|YP_003382309.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811671|gb|ADB33510.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 215 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 34/49 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ + ++ G+T+ EI+ L IS +TV +++AS+ RK A + R+ Sbjct: 154 LTDRELDAVKAVARGRTNAEISAELMISLSTVKSHLASVQRKIAARNRT 202 >gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria meningitidis alpha153] gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M6190] gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis ES14902] Length = 218 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 203 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE+E L ++ G T+ EIA+ L +S TV Y I K TRS + YA+ Sbjct: 139 KSVPLSPRELEVLRLVALGHTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYAL 198 Query: 242 RNNI 245 + + Sbjct: 199 EHKL 202 >gi|310822246|ref|YP_003954604.1| LuxR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309395318|gb|ADO72777.1| Transcriptional regulator, LuxR family protein [Stigmatella aurantiaca DW4/3-1] Length = 394 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT R+ + LT +GKT+ EIA+ LG ++TV +++ I+RK RS Sbjct: 334 WALTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGADNRS 384 >gi|238749708|ref|ZP_04611213.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380] gi|238712363|gb|EEQ04576.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380] Length = 244 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + RE E L W S GKT EI++IL I R+TV +I +++RK AI + Sbjct: 181 FSPRENEILYWASVGKTYSEISIILEIKRSTVKFHIGNVVRKLGVLNAKHAIRLGI 236 >gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing magnetic vibrio] Length = 261 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E + L+ ++G + +IA LG+S V+ +IA K A+ TR+ A+A A+R +I Sbjct: 199 LTEKEKQALSLTAKGLKTKQIADKLGMSDKAVDQHIARATAKLASTTRTQAVAEAIRLHI 258 Query: 246 V 246 + Sbjct: 259 L 259 >gi|160885020|ref|ZP_02066023.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483] gi|156109370|gb|EDO11115.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483] Length = 200 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str. NATL1A] gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. NATL1A] Length = 90 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 38/56 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 14 LSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69 >gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240149] gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis NZ-05/33] Length = 218 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 241 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++ + EI L I+ NTV N++ I+ K +R+ A YAVR Sbjct: 177 ELTRRETEVLKLLARSLNNREIGERLFITENTVKNHVRKILEKLQVHSRTEAAIYAVRAE 236 Query: 245 IV 246 V Sbjct: 237 YV 238 >gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4] Length = 74 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 215 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + A IM K K+R + YA++ + Sbjct: 153 LSQREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPELVEYALKKKL 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|89891291|ref|ZP_01202798.1| putative response regulator, luxR family [Flavobacteria bacterium BBFL7] gi|89516603|gb|EAS19263.1| putative response regulator, luxR family [Flavobacteria bacterium BBFL7] Length = 218 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I E T+ EIA L +S+ TV+ + +++ KT + +G +AYA++N I Sbjct: 154 LSPRELDVLQLICEQFTTAEIADKLCVSKRTVDGHRNNLLIKTKMRNVAGLVAYAIQNAI 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 216 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L I+ GK++ EIA L IS TV N+++S++ K + R+ AI A Sbjct: 155 LTEREMDVLHGIAAGKSNREIADQLCISEGTVKNHVSSLLAKLDVRDRTQAIIRA 209 >gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+A Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVA 244 >gi|116626924|ref|YP_829080.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230086|gb|ABJ88795.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E +++ G + +IA +L IS TV+ Y AS+MRK G + +A+ N+ Sbjct: 158 LSPREMEVFSYLVNGLRAKDIADLLEISPKTVDTYRASLMRKLNVHDLVGLVKFAIERNL 217 >gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 221 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+GRE+E L ++ G T++EIA L IS +TV ++ +I K R+ A A R Sbjct: 161 LSGREMEVLRLVASGMTNNEIARALCISPHTVKTHVGNIFNKLGVNDRAMAAVTAAR 217 >gi|300932450|ref|ZP_07147706.1| LuxR family transcriptional regulator [Corynebacterium resistens DSM 45100] Length = 282 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 220 KLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 277 >gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae] Length = 234 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 170 KLTPREKECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVIATQMG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 97 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 12 LSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQ 68 >gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136] Length = 216 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G+++ EIA L IS TV ++ S+ K +R+ AIA A R + Sbjct: 154 LTRREQEVLELLARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASRKGL 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 349 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L+W SEG+T+ EI L IS TV +I +I+ K + A+ Sbjct: 175 SLTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVG 228 >gi|325859996|ref|ZP_08173123.1| hemerythrin HHE cation binding domain protein [Prevotella denticola CRIS 18C-A] gi|325482522|gb|EGC85528.1| hemerythrin HHE cation binding domain protein [Prevotella denticola CRIS 18C-A] Length = 336 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + +++G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 269 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 328 Query: 246 V 246 V Sbjct: 329 V 329 >gi|301301409|ref|ZP_07207547.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300850961|gb|EFK78707.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 201 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L + ++ E+A +S T+ NYI+SI+ KT T++R A+ A + Sbjct: 138 DNPLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197 Query: 243 NN 244 N Sbjct: 198 RN 199 >gi|218283881|ref|ZP_03489767.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989] gi|218215544|gb|EEC89082.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989] Length = 217 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 AN + +DF+L+ E + + I G ++ EIA LG S T+ NY++ I+ K Sbjct: 141 ANSNSEFSFEHEEDFDLSDTECKIIAQIGHGYSNKEIAQKLGFSEGTIRNYLSVILDKLD 200 Query: 230 TKTRSG-AIAYAVRNN 244 + R+ AI Y R N Sbjct: 201 LRDRTQLAIWYLSRGN 216 >gi|184201310|ref|YP_001855517.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183581540|dbj|BAG30011.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 270 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT ++ G +++EIA L + R TV +++++++KT + R A+ +A + + Sbjct: 208 LTARETEVLTAMARGLSNEEIARELVVGRATVKTHVSNVLQKTGARDRVHAVIWAFEHGL 267 >gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis] Length = 229 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++GK++ I L IS V N++++I++K R+ A+ A++N Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKAVKNHVSNILQKINVNDRTQAVVVAIKN 223 >gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 219 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 FE LT RE E L +++G + EIA L IS TV +I +I+ K +R A+ A R Sbjct: 153 FEPLTDREREVLQALADGLSDKEIAERLYISPATVRTHITAILGKLDANSRLQAVVVAAR 212 Query: 243 NNIV 246 +N+V Sbjct: 213 HNLV 216 >gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei] Length = 232 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232 >gi|319795269|ref|YP_004156909.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597732|gb|ADU38798.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 228 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E LT + G++S +IA LG+S TV + SI R+ + ++ I YAV + Sbjct: 164 LTPRESEILTALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELIKYAVEH 221 >gi|260642682|ref|ZP_05859490.1| transcriptional regulator, LuxR family domain protein [Bacteroides finegoldii DSM 17565] gi|260621023|gb|EEX43894.1| transcriptional regulator, LuxR family domain protein [Bacteroides finegoldii DSM 17565] Length = 200 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 213 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 147 GRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206 Query: 241 VRNNI 245 VR+ + Sbjct: 207 VRHGL 211 >gi|111224287|ref|YP_715081.1| LuxR family transcriptional regulator [Frankia alni ACN14a] gi|111151819|emb|CAJ63539.1| Putative LuxR-family transcriptional regulator [Frankia alni ACN14a] Length = 349 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + G LT RE+E L ++ G ++ E A L +S TV Y+ SIMRK + R+ A Sbjct: 279 EAKVGGRLALTPRELEVLAQVALGLSNVETARRLTVSPETVKAYLRSIMRKLGVRNRTAA 338 Query: 237 IAYA 240 + A Sbjct: 339 VHAA 342 >gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 514 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|83952281|ref|ZP_00961013.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM] gi|83837287|gb|EAP76584.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM] Length = 219 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE E L + +G T+ +I+ LG+S NTV Y+ +I +K +R GAIA Sbjct: 160 LSRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLGVNSRGGAIA 212 >gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 222 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++T RE+E L ++ G ++ EIA +S TV ++ ++ KT ++ R A+ YA + Sbjct: 152 DMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVG 211 Query: 245 IV 246 +V Sbjct: 212 LV 213 >gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 227 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G ++ EIA L + TV +++ ++ K + R+ A+ YA + Sbjct: 161 DLTDREYEVLVHLARGSSNAEIAARLHLGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHG 220 Query: 245 IV 246 +V Sbjct: 221 VV 222 >gi|237803694|ref|ZP_04591279.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025676|gb|EGI05732.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 81 Score = 42.0 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G+ L RE+E + ++++G TS EI + G+S N V ++S M K R+ +A Sbjct: 13 HLGRG--LAPRELEFVLYVAQGLTSKEIGKVAGLSSNGVEKRLSSAMFKLKVTRRTAMVA 70 Query: 239 YAVRNNIV 246 A++ I+ Sbjct: 71 QAIKLQII 78 >gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 213 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 179 HWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 H DF LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + Sbjct: 139 HMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVR 198 Query: 232 TRSGAIAYA 240 R+ A+ A Sbjct: 199 DRTRAVLKA 207 >gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 204 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L ++G T+ E+A L +S+ TV NY+++ ++K A + R+ A+ Sbjct: 144 LTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAV 195 >gi|116626537|ref|YP_828693.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229699|gb|ABJ88408.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 190 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 27/43 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +LTGRE ECL +EG + +E+A LGI TV +A + RK Sbjct: 117 DLTGREFECLLLRAEGLSYEEMATALGIRSGTVGALLARVRRK 159 >gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 201 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D +G++ LT RE L I++GK++ EI+ L I+ T+ NYI+ I+ K R A Sbjct: 131 DEAYGEENPLTEREKAVLVLIADGKSTKEISKELFITTGTIRNYISVILNKLGVGNRVEA 190 Query: 237 I 237 I Sbjct: 191 I 191 >gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] Length = 224 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT RE + L +++G ++ +I L +S TV Y++S++RK+ R+ + +A+ Sbjct: 159 KSLSLTQREKDVLQLLTDGLSNAQIGDRLHLSHRTVEKYVSSLLRKSDRTNRAELVRFAM 218 Query: 242 RNNIV 246 +++V Sbjct: 219 EHHLV 223 >gi|260773658|ref|ZP_05882574.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP 69.14] gi|260612797|gb|EEX38000.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP 69.14] Length = 216 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 ++ H +LT RE++ L + ++D+IA L IS TV +++ I +K A K R+ Sbjct: 146 HEQHTKATLDLTVREIQILRCLQAQASNDDIAKNLFISELTVKSHLYQIYKKLAVKNRAQ 205 Query: 236 AIAYA 240 AI++A Sbjct: 206 AISWA 210 >gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 217 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L W+++G ++ EI+ + +S TV N+++ I++K + R+ A A R Sbjct: 151 DLTDREKEVLFWLAQGLSNLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVG 210 Query: 245 IV 246 I Sbjct: 211 IA 212 >gi|269125895|ref|YP_003299265.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310853|gb|ACY97227.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 218 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 163 GLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 G +AA A + + W G LT RE E L+ + G ++ +A L +S T+ +++ Sbjct: 135 GRMAASAARLNRGE--FWPGAHRGLTQRESEVLSLLVAGLSNKAMAARLVVSEETIKSHL 192 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 ++ RK RSGAIA A+R + Sbjct: 193 RALYRKLEVTDRSGAIAVALREGL 216 >gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 205 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++++ Sbjct: 144 LTDREMEILLLIANGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDL 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|330809309|ref|YP_004353771.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377417|gb|AEA68767.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT R+ + L I+ GKT+ EIA LGIS TV +++S+++ TR+ A A Sbjct: 95 QLTARQRQVLGLIAAGKTNKEIARDLGISPFTVRIHVSSLLKSLGVPTRAAAAA 148 >gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis OX99.30304] gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M0579] Length = 218 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|296447677|ref|ZP_06889595.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296254818|gb|EFH01927.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 233 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G T E+A L ISR TV +I ++ RK + RS A+ A R + Sbjct: 171 LTPREMDILHGIAKGLTYAELATHLQISRQTVPAHIKNVYRKLQSNNRSEAVYEASRRGL 230 Query: 246 V 246 + Sbjct: 231 I 231 >gi|295838096|ref|ZP_06825029.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295826844|gb|EFG65089.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 219 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE + L +S+G + +IA L IS TV ++ + +K TR+GA+A A Sbjct: 157 ELTPRERDILAQLSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVA 212 >gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 204 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++G T+ E+A L +S+ TV NY+++ ++K A + R+ A+ A Sbjct: 144 LTDREREVLRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTA 198 >gi|254295070|ref|YP_003061093.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043601|gb|ACT60396.1| two component transcriptional regulator, LuxR family [Hirschia baltica ATCC 49814] Length = 302 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + F LT RE E L W+S GK + I+ ILGIS T+N ++ + K + Sbjct: 238 QQFNLTQREAEVLLWVSFGKPNRVISEILGISPRTINKHLEHVFEKMGVE 287 >gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 263 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++ G TS EI L IS TVN +I +I RK +TR+ A+ +A Sbjct: 203 LSAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQAVRFA 257 >gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] Length = 213 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 149 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVR 206 >gi|332521837|ref|ZP_08398286.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] gi|332042509|gb|EGI78711.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] Length = 453 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE E L IS GKT+ EIA+ L IS NTV ++ +I K K+R Sbjct: 392 LSFRETEILQLISLGKTNKEIALELHISENTVKYHVKNIYTKLNIKSR 439 >gi|325262648|ref|ZP_08129385.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032480|gb|EGB93758.1| DNA-binding response regulator [Clostridium sp. D5] Length = 206 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +E+ RE+E + I++G ++ EIA L +S TV NY++SI+ K + R+ Sbjct: 146 YEINDRELEIIRLIADGLSNKEIASTLFLSEGTVRNYLSSILDKLELRDRT 196 >gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 240 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIREVSESTVKFHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017] Length = 222 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ISEG ++ EIA L +S T+ +Y+ I+ K + R A A AVR + Sbjct: 162 LSDREREVLQLISEGCSNQEIANQLYLSLGTIKSYVRMILNKLSVDDRVQAAAKAVREGL 221 Query: 246 V 246 + Sbjct: 222 I 222 >gi|146302391|ref|YP_001196982.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156809|gb|ABQ07663.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 219 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E +T I + EI+ L IS NTV + +IM+K K G + YA++NN+ Sbjct: 157 LSPREIEIVTLICLEYSGKEISEKLFISVNTVETHRKNIMKKLNIKNTIGLVKYALKNNL 216 Query: 246 V 246 + Sbjct: 217 I 217 >gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 91 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N++++I+ KTAT R + +A++ Sbjct: 12 LSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVRWAMQ 68 >gi|298488407|ref|ZP_07006438.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157032|gb|EFH98121.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 209 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ G LT R+ E L ++ GKT+ EIA LGIS TV +++S+++ TRS Sbjct: 138 DLDSGAISHLTVRQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSAV 197 Query: 237 IA 238 A Sbjct: 198 AA 199 >gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 228 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E + ++GK++DEIA L +S TV +I M K + R+ + A +N Sbjct: 160 DLTNREREAMKLAADGKSNDEIARELNLSALTVRTHIQRAMTKLGARDRAQLVVLAYKNG 219 Query: 245 IV 246 +V Sbjct: 220 LV 221 >gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 218 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++EG+++ E+A +LGIS T ++ +M K R+ + +A++ + Sbjct: 154 LTDREKQVLKLVAEGRSNKEVAEVLGISVKTAMSHREHVMEKLQVHNRTELVRFALKKGV 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|115376820|ref|ZP_01464044.1| transcriptional regulator, LuxR family protein [Stigmatella aurantiaca DW4/3-1] gi|115366182|gb|EAU65193.1| transcriptional regulator, LuxR family protein [Stigmatella aurantiaca DW4/3-1] Length = 419 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT R+ + LT +GKT+ EIA+ LG ++TV +++ I+RK RS Sbjct: 359 WALTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGADNRS 409 >gi|90962775|ref|YP_536690.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90821969|gb|ABE00607.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 201 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L + ++ E+A +S T+ NYI+SI+ KT T++R A+ A + Sbjct: 138 DNPLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197 Query: 243 NN 244 N Sbjct: 198 RN 199 >gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 214 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 154 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 208 >gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 214 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 154 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 208 >gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 218 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 154 QLTEREVDILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213 Query: 245 I 245 I Sbjct: 214 I 214 >gi|320532002|ref|ZP_08032895.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135766|gb|EFW27821.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 203 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L ++G T E+A + +S T N+++ M KT TR+ A+ A + Sbjct: 138 DSPLTARETEVLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQ 197 Query: 243 NN 244 Sbjct: 198 KG 199 >gi|294814752|ref|ZP_06773395.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327351|gb|EFG08994.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 430 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 177 DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + H G EL+ RE E + I+ G T+ EIA IS+ TV N+I I K T +R Sbjct: 355 ETHGGTVLGELSRREAEVMELIAAGLTNQEIAAACFISQKTVKNHINRIFAKLNTGSRGE 414 Query: 236 AIA 238 AIA Sbjct: 415 AIA 417 >gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L + EG+++ EIA ++ IS +TV ++ +I K R+ A+ A + Sbjct: 145 ELTPRELEVLQLLGEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVVIAFKRG 204 Query: 245 IV 246 I+ Sbjct: 205 IL 206 >gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens] Length = 214 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +F LT RE+E L ++ G + EIA L +S TV NYI++I K K R A A Sbjct: 149 EFGLTAREIEVLHKLAAGLRNQEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKA 206 >gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 214 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L I+ G + EIA L IS NTV +I+++ +K + R+ A+ A+ Sbjct: 152 LTERETEILRLIASGAANKEIAAALFISENTVKTHISNLFQKLGARDRTEAVTKAL 207 >gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240013] Length = 218 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 201 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 141 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 195 >gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 219 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I+ G ++ EIA L ++ TV +++ ++ K + R+ A+ +A + Sbjct: 155 ELTPRELEVLELIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQAVVFAYEHG 214 Query: 245 IV 246 +V Sbjct: 215 VV 216 >gi|307328696|ref|ZP_07607868.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885645|gb|EFN16659.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 159 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+ L+ ++G + EIA L +S T+ NY+A+I RKT + R AI Sbjct: 99 LTERELGVLSLAADGASIPEIARTLHLSTGTIRNYLAAITRKTGARNRVDAI 150 >gi|163736433|ref|ZP_02143852.1| transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] gi|163741032|ref|ZP_02148424.1| autoinducer-binding transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161385385|gb|EDQ09762.1| autoinducer-binding transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161390303|gb|EDQ14653.1| transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] Length = 251 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ TV ++ A +T + A+ A +N Sbjct: 186 LTKRQREALQWVGDGKTTQDIALLMGLTPATVEKHLRLAREALAVETTAHAVLKAALHN 244 >gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++ L I +GK++ EI+ IL ++ TV NY++ ++ + R+ A +A Sbjct: 152 LSDRELDVLNLIGQGKSNREISQILHLTEGTVKNYVSQLLGSLGVRDRTQAALWA 206 >gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] Length = 223 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L +++G EI LGIS TV N+I +I +K + + AIA A R Sbjct: 161 IDLTNRETEILNAVAKGYKRREIGEKLGISTGTVGNHINNIYQKLNVNSNTEAIARATR 219 >gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006] Length = 247 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L W S GK+ EIA+ILGI TV ++ + ++K AI V Sbjct: 179 LSKRENEILYWASMGKSYQEIALILGIKLTTVKYHVGNAVKKLGVTNAKHAIRLGVE 235 >gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24] gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans TK24] gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter sphaeroides KD131] gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides] gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131] gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] Length = 233 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W + GK+ +I ILGIS TV ++ S K T + A+ A+ + Sbjct: 170 LSTREIEVLQWAAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGL 229 Query: 246 V 246 V Sbjct: 230 V 230 >gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 213 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri] Length = 229 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E L W S GKT EIA+I GI+ TV +++ ++++K AI V Sbjct: 164 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGV 219 >gi|330501190|ref|YP_004378059.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] gi|328915476|gb|AEB56307.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] Length = 476 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L IS G ++ E+A LGIS +TV ++ S+ RK TR+ A A+ + Sbjct: 416 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 475 Query: 246 V 246 + Sbjct: 476 I 476 >gi|325269082|ref|ZP_08135703.1| transcriptional regulator [Prevotella multiformis DSM 16608] gi|324988703|gb|EGC20665.1| transcriptional regulator [Prevotella multiformis DSM 16608] Length = 318 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + +++G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|296118869|ref|ZP_06837442.1| transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] gi|295967967|gb|EFG81219.1| transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] Length = 294 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 232 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 289 >gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 154 ILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 +L + + E+ Y A++ ++ H +D +L+ RE++ L ++ G ++ ++A L I Sbjct: 113 LLHEAIVEVAAGGTYFPASIARTMSAHT-EDQDLSARELQVLHLVAAGSSNKDVADKLSI 171 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ +IM+K + R+ + A+R IV Sbjct: 172 SLPTVKMHMTNIMKKLSVYDRTQLVIAAIRKGIV 205 >gi|282879979|ref|ZP_06288701.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS 5C-B1] gi|281306093|gb|EFA98131.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS 5C-B1] Length = 187 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ E+ + I +G + DE+A L IS NTV N+I S+ K +S I YA NN Sbjct: 121 KLSDAELRVMKLIYQGASKDEVAEQLYISPNTVKNHIKSVYLKLGIHEKSEFIRYAESNN 180 Query: 245 I 245 + Sbjct: 181 L 181 >gi|290962908|ref|YP_003494090.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260652434|emb|CBG75567.1| Putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 289 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L+ ++ G+T+ ++A LG+S TV +Y+ S MR+ TR +A A R Sbjct: 228 LSSRELDVLSCVALGRTNADVAEELGLSAETVKSYLRSAMRRLGCHTRMETVATARR 284 >gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] Length = 219 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F YD LT RE E L ++EG ++ +I+ L IS NTV N++ +I++K + Sbjct: 141 FSQYDKPDPSKSPLTAREKEILGLVAEGLSNRDISSDLCISENTVKNHLKNILQKLHLEN 200 Query: 233 RSGAIAYA 240 R YA Sbjct: 201 RVQLTRYA 208 >gi|56696372|ref|YP_166729.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678109|gb|AAV94775.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 238 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D T RE E + G T +EI LG S+ T+ ++IASI RK+ RS + Sbjct: 174 DLGFTSREAEVSDLLVTGLTDEEICTKLGFSKPTLRSHIASIFRKSGLNRRSQLAQFLAE 233 Query: 243 NN 244 N Sbjct: 234 KN 235 >gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|327313695|ref|YP_004329132.1| hemerythrin HHE cation binding domain-containing protein [Prevotella denticola F0289] gi|326944895|gb|AEA20780.1| hemerythrin HHE cation binding domain protein [Prevotella denticola F0289] Length = 318 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + +++G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 214 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++EG T+ +IA L IS NTV +I I+ K R+ A+ A + I Sbjct: 152 LSDRELEVLQCLAEGLTTQQIASRLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGI 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 202 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L S+G T+ +++ L +S+ TV NY++S + KT +TR+ A+ A R+N Sbjct: 142 LTEREQDVLRATSDGGTTADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIA-RDN 199 >gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] Length = 214 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 245 I 245 + Sbjct: 210 V 210 >gi|227506399|ref|ZP_03936448.1| regulatory family protein [Corynebacterium striatum ATCC 6940] gi|227197050|gb|EEI77098.1| regulatory family protein [Corynebacterium striatum ATCC 6940] Length = 293 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A Sbjct: 228 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 287 Query: 242 R 242 R Sbjct: 288 R 288 >gi|153807354|ref|ZP_01960022.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185] gi|149129716|gb|EDM20928.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185] Length = 200 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|104779522|ref|YP_606020.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95108509|emb|CAK13203.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 217 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L I+ G+T+ IA LG+S TV + + IM + G + +AVR I Sbjct: 153 LTKRQLEILRLIARGETTRSIADGLGLSVKTVEAHRSQIMHRLQIHDVPGLVLFAVREGI 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|77413329|ref|ZP_00789524.1| response regulator [Streptococcus agalactiae 515] gi|77160643|gb|EAO71759.1| response regulator [Streptococcus agalactiae 515] gi|319744307|gb|EFV96671.1| LuxR family DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 196 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E++ L+ I++GKTS EIA L +S TV NY ++I K R A+ A Sbjct: 136 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190 >gi|302345391|ref|YP_003813744.1| hemerythrin HHE cation binding domain protein [Prevotella melaninogenica ATCC 25845] gi|302149568|gb|ADK95830.1| hemerythrin HHE cation binding domain protein [Prevotella melaninogenica ATCC 25845] Length = 318 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + +++G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|300722895|ref|YP_003712190.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] gi|297629407|emb|CBJ90008.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] Length = 229 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E + +I +G ++ +IA L +S T++N+I ++ +KT T +R + Y +NI Sbjct: 151 FSKREWEIIFYIMQGYSTKDIAERLFVSYRTISNHIQNVYKKTETNSRKSLVDYCYEHNI 210 Query: 246 V 246 Sbjct: 211 A 211 >gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] Length = 214 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 245 I 245 + Sbjct: 210 V 210 >gi|218672306|ref|ZP_03521975.1| hypothetical protein RetlG_12042 [Rhizobium etli GR56] Length = 109 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+ CL +G TS+EIA T+N+Y+ S +K R+ AIA A+R + Sbjct: 48 LTSGELRCLELAGKGLTSEEIADASDYRTETINSYLKSATKKLGAANRAHAIAEAIRRQL 107 Query: 246 V 246 + Sbjct: 108 I 108 >gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 213 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N F S D + LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K Sbjct: 142 NEFVSLD----RPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197 Query: 231 KTRSGAIAYA 240 + R+ A+ A Sbjct: 198 RDRTRAVLKA 207 >gi|163745621|ref|ZP_02152981.1| transcriptional regulator, LuxR family/sensory box protein [Oceanibulbus indolifex HEL-45] gi|161382439|gb|EDQ06848.1| transcriptional regulator, LuxR family/sensory box protein [Oceanibulbus indolifex HEL-45] Length = 201 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 LT RE E L+ ++EG TS EIA+ L IS TV Y A +++K SG Sbjct: 133 LTRREREILSHLAEGLTSKEIAIKLDISHRTVEVYRAKLLKKFGVNNTSG 182 >gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 252 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D W + F T RE + + ++ G ++ EIA +LG+S T+ ++++S++ K + R Sbjct: 176 DSCWKEQF--TDREKDVVALVATGASNAEIAGVLGLSETTIKSHVSSVLAKRGLRNRVQL 233 Query: 237 IAYAVRNNIV 246 + +A R+ +V Sbjct: 234 VVWAFRSGLV 243 >gi|302520045|ref|ZP_07272387.1| response regulatory protein [Streptomyces sp. SPB78] gi|318061142|ref|ZP_07979863.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079227|ref|ZP_07986559.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|302428940|gb|EFL00756.1| response regulatory protein [Streptomyces sp. SPB78] Length = 220 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE + L +S+G + +IA L IS TV ++ + +K TR+GA+A A Sbjct: 158 ELTPRERDILAQLSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVA 213 >gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G ++ EIA LG+ T+ Y+A+I K R+ A+ AV+ I Sbjct: 146 LSPREMEVLKLLAKGLSNKEIATQLGLVVGTIKIYVANIFNKLGVSDRTQALVTAVKRGI 205 Query: 246 V 246 + Sbjct: 206 I 206 >gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33] gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33] gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84] gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7] gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407] gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33] gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33] gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84] gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407] gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7] gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14] Length = 200 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT E + L ++EG ++ EIA L +S TV NY+ SI+ K + R+ A+ A Sbjct: 139 LTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVKVA 193 >gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++G+++ EIA L IS TV ++I I K + R+ AI YA + Sbjct: 154 DLTPRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKG 213 Query: 245 IV 246 IV Sbjct: 214 IV 215 >gi|29347818|ref|NP_811321.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298387982|ref|ZP_06997530.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 1_1_14] gi|29339719|gb|AAO77515.1| luxR family transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298259248|gb|EFI02124.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 1_1_14] Length = 200 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] Length = 214 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 245 I 245 + Sbjct: 210 V 210 >gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 148 GRGNSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWA 207 Query: 241 VRNNI 245 VR+ + Sbjct: 208 VRHGM 212 >gi|189468407|ref|ZP_03017192.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM 17393] gi|189436671|gb|EDV05656.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM 17393] Length = 209 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H + +L+ RE+E L I++G + EIA L IS TV ++ +I K K+ +G Sbjct: 137 HADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTI 196 Query: 239 YAVRNNIV 246 YAV + V Sbjct: 197 YAVMHGYV 204 >gi|187779968|ref|ZP_02996441.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC 15579] gi|187773593|gb|EDU37395.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC 15579] Length = 217 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LTGRE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTGREINIIREIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NI 245 NI Sbjct: 214 NI 215 >gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L + +G ++ EIA L +S NT+ ++ IM K A R A A+R+ + Sbjct: 165 LSARELEVLKLMVDGLSNPEIAEKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 224 Query: 246 V 246 V Sbjct: 225 V 225 >gi|256617156|ref|ZP_05474002.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|257087415|ref|ZP_05581776.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|312899812|ref|ZP_07759131.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|256596683|gb|EEU15859.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256995445|gb|EEU82747.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|295113419|emb|CBL32056.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterococcus sp. 7L76] gi|311293062|gb|EFQ71618.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|315025432|gb|EFT37364.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2137] gi|315166424|gb|EFU10441.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1341] Length = 197 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +EG EIA L ISR TVNN++ SI K + AI A+ I Sbjct: 132 LSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGI 191 Query: 246 V 246 + Sbjct: 192 I 192 >gi|224535141|ref|ZP_03675680.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus DSM 14838] gi|224523238|gb|EEF92343.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus DSM 14838] Length = 209 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H + +L+ RE+E L I++G + EIA L IS TV ++ +I K K+ +G Sbjct: 137 HADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTI 196 Query: 239 YAVRNNIV 246 YAV + V Sbjct: 197 YAVMHGYV 204 >gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 LRDR E G +N+ K LT RE E L I+EG+ + +IA LGIS Sbjct: 135 LRDRARE-GFANGNNSNV---------KTSNLTEREAEVLQLIAEGQANKQIASELGISI 184 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV + +M K +G YA+ ++ Sbjct: 185 KTVEKHRQQVMNKLNIHDVAGLTRYAISKGVI 216 >gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 218 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G T+ EIA +G+ TV ++AS++ K+ + R+ A+ A + Sbjct: 155 LTEREAEVLRLVATGLTNAEIAGRMGVGPATVKTHVASVLAKSGARDRTQAVILAYESGF 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|300789938|ref|YP_003770229.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799452|gb|ADJ49827.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT REV+ L ++EG + EIA L S TV N I ++ + + R A+AYA Sbjct: 127 GGGAALTPREVDVLRLMAEGWDTAEIAGKLCYSERTVKNVIYAMTNRLNLRNRPHAVAYA 186 Query: 241 VRNNIV 246 VR ++ Sbjct: 187 VRAGVI 192 >gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] Length = 225 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++EG+++ IA L ISR TV N+ A+I K + + + YAVR + Sbjct: 158 LTRREQQILRLLAEGRSAGAIAADLYISRKTVENHRANIFGKLGLTSMAELVHYAVRLGL 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 74 Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELLR 68 >gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] Length = 216 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G + EIA +L +S TV + A IM K K++ + YA++ + Sbjct: 154 LTKRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPELVEYALKKKL 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 217 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++G ++ EIA L +S TV +I++I+ K R+ YA+R Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIADTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKR 210 Query: 245 IV 246 +V Sbjct: 211 LV 212 >gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 218 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++EG ++ +I+V L IS NTV N++ +I++K + R YA Sbjct: 154 LTAREREILGRVAEGLSNRDISVALCISENTVKNHLKNILQKLHLENRVQLTRYA 208 >gi|297622974|ref|YP_003704408.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164154|gb|ADI13865.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 386 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L I++G ++ I+ LG++ TV NY+ASI +K ++R+ A+ +A Sbjct: 326 LTPREQQVLGRIAKGLSNSAISQELGLAPQTVRNYVASIYQKLGVRSRAEAVVWA 380 >gi|296167213|ref|ZP_06849619.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897454|gb|EFG77054.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 238 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++EG ++ I L IS NT N++ +I+ KT R+ A YA + + Sbjct: 177 LTEREVEVLRLLAEGLSNRAIGERLFISTNTAANHVRNILVKTGAANRTQAAMYAADHEL 236 Query: 246 V 246 + Sbjct: 237 L 237 >gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 211 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +++G ++ EIA L IS+ TV +++ I K R+ A+ A+ I Sbjct: 147 LTPREIDVLRLVAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGI 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|260767312|ref|ZP_05876252.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP 102972] gi|260617719|gb|EEX42898.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP 102972] Length = 216 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y ++F+ + H ELT RE++ L + G ++ ++A L IS TV +++ I Sbjct: 137 LLHYYRHIFQHH--HTQATIELTTRELQILRSLQTGASNMQMAENLFISEFTVKSHLYQI 194 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K + K R+ AI +A +N Sbjct: 195 FKKLSVKNRTQAITWANQN 213 >gi|320008841|gb|ADW03691.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 371 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + ++L+ RE E + IS G ++ +IA IS TV N+I I K + +RS AIA Sbjct: 295 QQYQLSSREAEVMELISSGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 351 >gi|288803367|ref|ZP_06408800.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] gi|288334187|gb|EFC72629.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] Length = 313 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + +++G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 246 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 305 Query: 246 V 246 V Sbjct: 306 V 306 >gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] Length = 214 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 245 I 245 + Sbjct: 210 V 210 >gi|254387192|ref|ZP_05002459.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1] gi|194346004|gb|EDX26970.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1] Length = 90 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E ++EG T+ IA L +S TV+ +++ I RKT TRS A R+ Sbjct: 31 LTPREHEIAALVAEGLTTPAIAARLYLSPRTVDTHLSHIFRKTGVTTRSALAALTARH 88 >gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032] gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061] gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032] gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061] Length = 211 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++GK++ IA L I+ TV +I +I+ K + R+ A YA R+ + Sbjct: 150 LTAREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKLDVEDRTQAAVYAHRHKL 209 Query: 246 V 246 + Sbjct: 210 I 210 >gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L+ +++GK++ EIA L I+ TV ++ +I+RK + R+ A A+ + Sbjct: 164 LTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRL 223 Query: 246 V 246 V Sbjct: 224 V 224 >gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE +CL I EG + EIA LGI+ TV ++ +I+ K K+R A+ +N Sbjct: 169 LTSREKDCLKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGVKSRLEALLKYKKN 226 >gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 237 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMFKSY------ 176 G+ N Y + D + L + P KG I+ + G ++ A++ ++Y Sbjct: 103 GIINGYTFVLHDNQNNLVTLSFIIPAAKGAEIMELLIQHKGDISLLLASVHETYLTLTSL 162 Query: 177 -DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + K + T RE E L W S GKT E +ILGI TV ++++I++K Sbjct: 163 SEKDTDKHSQFTPRENEILHWTSLGKTYQETGMILGIKVRTVKFHMSNIVKKMGVANARH 222 Query: 236 AIAYAVR 242 A+ V Sbjct: 223 AVRLGVE 229 >gi|289642549|ref|ZP_06474692.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507637|gb|EFD28593.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 407 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R IG + A H G D LT RE E L + G T+ IA L I+ TV Sbjct: 317 RYAGIGAMPGDGARPAPVATAHTGGD--LTARESEVLELMVAGATNSVIAETLVIAEETV 374 Query: 218 NNYIASIMRKTATKTRSGAIA 238 +++ I+RK RS AIA Sbjct: 375 KSHVKHILRKLGAVNRSQAIA 395 >gi|290955558|ref|YP_003486740.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260645084|emb|CBG68170.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 970 Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE+E +++G TS IA L +SR TV +++ RKT +R+ A R Sbjct: 900 LTARELEIAELVAQGLTSQAIADRLFVSRRTVETHVSRTFRKTGVSSRTALAALMAR 956 >gi|332664117|ref|YP_004446905.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332931|gb|AEE50032.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 211 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L+W++ GK+ +IA IL + + TV ++I +I K +++ AI A Sbjct: 148 DSLLTPREREVLSWMARGKSYTQIAEILFVDKETVRSHIKNIYGKLEVHSKADAIEKATL 207 Query: 243 NNIV 246 ++ Sbjct: 208 EKLI 211 >gi|330986356|gb|EGH84459.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011222|gb|EGH91278.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 220 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + + +M++ +G + + VR Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 232 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L I++G EIA LGIS TV YI +I RK R A+ AV+ Sbjct: 168 IRLTPREADILWGIAKGYRYAEIAAQLGISPQTVTGYIKTIYRKLHVTNRGEAVFEAVQQ 227 Query: 244 NIV 246 ++ Sbjct: 228 GLI 230 >gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] Length = 74 Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 >gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 237 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EI LGIS NTV N++ +I++K R YA I Sbjct: 178 LTDREKEILERVAYGDSNKEIGAKLGISENTVKNHLKNILQKLHLDNRVQLARYAHEQGI 237 >gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE+E + ++ G+++ IA L +S TV ++ I RK R+ A++ AVR Sbjct: 149 DPDLTTREIEVIRLLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEAVR 208 Query: 243 NNIV 246 ++ Sbjct: 209 RGLL 212 >gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+GRE L ++ G T+ E A L IS TV ++A I K R+ A+A A Sbjct: 145 ELSGRERTVLALVARGSTNKEAAAALFISETTVKTHLAHIYTKLGVSDRASAVAVA 200 >gi|146305270|ref|YP_001185735.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] gi|145573471|gb|ABP83003.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] Length = 474 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L IS G ++ E+A LGIS +TV ++ S+ RK TR+ A A+ + Sbjct: 414 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 473 Query: 246 V 246 + Sbjct: 474 I 474 >gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 16/68 (23%), Positives = 42/68 (61%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + ++ ELT E + + +++ G ++ EIA ++G+S+ TV +++++++ KT R+ Sbjct: 140 IKLDREIELTPTEAKVIQYVARGMSNREIAEVMGVSQRTVESHVSNMLSKTGLHNRTELA 199 Query: 238 AYAVRNNI 245 +A+ + + Sbjct: 200 RWALESGL 207 >gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 213 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 261 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE + L ++EG + IA +L +S TV ++ SI+RK + + R+ A+ A R+ Sbjct: 177 MPLSRREYQVLQLVAEGLENSAIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRS 236 Query: 244 NIV 246 I+ Sbjct: 237 GIL 239 >gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE E L ++ G T+ EIA + + TV ++AS++ KT + R+ A+ A Sbjct: 157 LTGRESEVLRHVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAA 211 >gi|239817344|ref|YP_002946254.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803921|gb|ACS20988.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 237 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 33/50 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT R+++ L W+ +GK + EIA + +S TV N++++I+ ++R+ Sbjct: 181 ELTPRQMQVLQWVLDGKANKEIAQLANLSEGTVKNHVSTILLLFGVRSRA 230 >gi|116621568|ref|YP_823724.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224730|gb|ABJ83439.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L ++EGKTS +IAV+L + TV +Y ++M+K +G A+ I Sbjct: 154 LSPRELQVLRLVAEGKTSKDIAVLLDLGLQTVRSYRKTMMKKLGVNNVAGLTQLALAAGI 213 >gi|56420621|ref|YP_147939.1| two component response regulator [Geobacillus kaustophilus HTA426] gi|261420284|ref|YP_003253966.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297529750|ref|YP_003671025.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319767094|ref|YP_004132595.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|56380463|dbj|BAD76371.1| two component response regulator [Geobacillus kaustophilus HTA426] gi|261376741|gb|ACX79484.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297253002|gb|ADI26448.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317111960|gb|ADU94452.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 209 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + G T+++IA L IS TV ++ A+IM+K K + I YA++N I Sbjct: 146 LTNREREIVRLTFLGYTNNQIANKLKISPKTVESHKANIMQKLGIKEKHELIQYALKNQI 205 >gi|330960741|gb|EGH61001.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 207 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ + L+ ++ GKT+ EIA LGIS TV +++S+++ TR+ A A Sbjct: 147 LTARQKQVLSLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRAAAAA 199 >gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0205] Length = 89 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 37/58 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E + +++G T+ EI L IS+ TV+N+++++ KT K R + +A+ Sbjct: 12 MDLSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAM 69 >gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K+ E LT RE+E L I+ G ++ EIA L +S TV ++ + K + R+ A+A+A Sbjct: 147 KEVEGLTARELEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFA 206 Query: 241 VRNNI 245 R I Sbjct: 207 YRAGI 211 >gi|253572201|ref|ZP_04849605.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838381|gb|EES66468.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6] Length = 200 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|126729883|ref|ZP_01745696.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] gi|126710002|gb|EBA09055.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] Length = 212 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ++ G LT RE L +++GK++ E+AV L IS TV + +I RK T +G Sbjct: 137 INTGGRDPLTNREQTILLQLAQGKSNKEVAVALDISVRTVETHRKNIKRKLGIATTAGLT 196 Query: 238 AYAVRNNIV 246 YA+ + ++ Sbjct: 197 RYALEHGVL 205 >gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri] gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] Length = 247 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E L W S GKT EIA+I GI+ TV +++ ++++K AI V Sbjct: 182 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGV 237 >gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++ G T+ E+A L I+ TV ++++I+ K R+ A+ YA ++ Sbjct: 146 DLTEREMEILLLLARGLTNQEVADQLFIAVKTVKTHVSNILAKLEVHDRTQAVIYAFQHK 205 Query: 245 IV 246 ++ Sbjct: 206 LI 207 >gi|260591671|ref|ZP_05857129.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] gi|260536471|gb|EEX19088.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] Length = 349 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + +++G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 282 LSDREKDVIVSVAQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 341 Query: 246 V 246 V Sbjct: 342 V 342 >gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L ++E T+ +IA LG+S+ TV N+++++ K R+ AI A Sbjct: 149 ELTRREREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVADRAHAIMRA 204 >gi|237713296|ref|ZP_04543777.1| luxR family transcriptional regulator [Bacteroides sp. D1] gi|237718016|ref|ZP_04548497.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4] gi|262406672|ref|ZP_06083221.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22] gi|293369987|ref|ZP_06616554.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|294646076|ref|ZP_06723741.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294810493|ref|ZP_06769146.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|299147711|ref|ZP_07040774.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 3_1_23] gi|229446535|gb|EEO52326.1| luxR family transcriptional regulator [Bacteroides sp. D1] gi|229452657|gb|EEO58448.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4] gi|262355375|gb|EEZ04466.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22] gi|292634905|gb|EFF53427.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|292638647|gb|EFF57000.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294442257|gb|EFG11071.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|298513894|gb|EFI37780.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. 3_1_23] Length = 200 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 223 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|329947902|ref|ZP_08294834.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523526|gb|EGF50624.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L ++G T E+A + +S T N+++ M KT TR+ A+ A + Sbjct: 138 DSPLTARETEVLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQ 197 Query: 243 NN 244 Sbjct: 198 KG 199 >gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1] Length = 190 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT E + L ++EG ++ EIA L +S TV NY+ SI+ K + R+ A+ A Sbjct: 129 LTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVKVA 183 >gi|119776080|ref|YP_928820.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768580|gb|ABM01151.1| transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 221 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LTGRE + + G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTGRECTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|115372616|ref|ZP_01459923.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|310823849|ref|YP_003956207.1| two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|115370337|gb|EAU69265.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|309396921|gb|ADO74380.1| Two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] Length = 213 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E + I+ G ++ EIA +LG + TV N ++I+ K + R+ A+ A+ Sbjct: 153 LTRRELEVMRLIARGLSNREIATVLGTAEGTVKNQTSNILAKLGVRDRTRAVLRAM 208 >gi|84394370|ref|ZP_00993090.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|84374999|gb|EAP91926.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] Length = 229 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 166 NVDLTIRELQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 225 Query: 243 N 243 N Sbjct: 226 N 226 >gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str. 1704B] Length = 239 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L W + GKT+ EIA IL S +N + A + +K +R AI A++ Sbjct: 176 QLSHRELEVLKWSAFGKTTWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIVKALQTG 235 Query: 245 IV 246 ++ Sbjct: 236 LL 237 >gi|326443131|ref|ZP_08217865.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 324 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 177 DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + H G EL+ RE E + I+ G T+ EIA IS+ TV N+I I K T +R Sbjct: 249 ETHGGTVLGELSRREAEVMELIAAGLTNQEIAAACFISQKTVKNHINRIFAKLNTGSRGE 308 Query: 236 AIA 238 AIA Sbjct: 309 AIA 311 >gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|320325415|gb|EFW81480.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str. B076] Length = 89 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G E+ RE E L + +G T+ EIA L IS TV ++++S++RK+ KTR +A Sbjct: 5 GSSMEVAMREQEVLGLLLQGCTNKEIARQLRISDYTVRDHVSSLLRKSRVKTRVELMARC 64 Query: 241 V 241 V Sbjct: 65 V 65 >gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 212 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L ++EGK++ EIA L + TV ++A++M KT R Y ++N Sbjct: 153 LTDRESQVLALVAEGKSNQEIAETLHLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210 >gi|296128509|ref|YP_003635759.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020324|gb|ADG73560.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 211 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L +++G ++ E+A LGI TV +++ ++RK + R+ + A + Sbjct: 148 VTAREREVLAAVAQGLSNAEVAARLGIGEQTVKTHVSELLRKLGRRDRAQLVVAAYEGGV 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|330888889|gb|EGH21550.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 197 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + + +M++ +G + + VR Sbjct: 131 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 190 Query: 244 NIV 246 I+ Sbjct: 191 RII 193 >gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 246 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE E L W S GKT EIA I+GIS TV ++ +++ K AI V Sbjct: 181 FTAREHEVLYWASMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVE 237 >gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 248 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 187 DLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|111224202|ref|YP_714996.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111151734|emb|CAJ63454.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 201 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE + L +G T +IA L +S TV NY++S++ KT T+ R A+ A Sbjct: 141 LTGRERDVLVAARDGATVADIAGRLFLSEGTVRNYLSSVIAKTGTRNRMEALRTA 195 >gi|51892315|ref|YP_075006.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51856004|dbj|BAD40162.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 229 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 WG L+ RE+E + G+++ EIA L IS NTV ++ ++ RKT T++R Sbjct: 20 WGA--HLSQRELEVGRLLVSGRSTQEIAAALFISENTVKTHLRNLYRKTRTRSR 71 >gi|25010373|ref|NP_734768.1| hypothetical protein gbs0299 [Streptococcus agalactiae NEM316] gi|76788230|ref|YP_329033.1| LuxR family transcriptional regulator [Streptococcus agalactiae A909] gi|77404997|ref|ZP_00782098.1| response regulator [Streptococcus agalactiae H36B] gi|23094725|emb|CAD45944.1| unknown [Streptococcus agalactiae NEM316] gi|76563287|gb|ABA45871.1| DNA-binding response regulator, LuxR family [Streptococcus agalactiae A909] gi|77176436|gb|EAO79204.1| response regulator [Streptococcus agalactiae H36B] Length = 196 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E++ L+ I++GKTS EIA L +S TV NY ++I K R A+ A Sbjct: 136 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190 >gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I EG T+ EI+ L I TV ++++I+ K R+ A YA RN Sbjct: 147 DLTEREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNILSKLGVTDRTQAAVYANRNG 206 Query: 245 IV 246 I+ Sbjct: 207 II 208 >gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I++G+++ EIA L +S TV N++++I K R+ AI A Sbjct: 157 ELTEREREVLQLIAQGRSNGEIAQTLFLSPKTVRNHVSNIFMKLHVADRAQAIVLA 212 >gi|182414056|ref|YP_001819122.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841270|gb|ACB75522.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 210 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAV 208 +L D L +I Y + FK+ +D + L+ E L++I G + +EI Sbjct: 110 MLGDALADIAGGRTYFSPAFKAAQRAHRRDQQSADKLLSDTERRVLSFIGHGLSDEEIGQ 169 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LGI+RNT + + I+RK + AYAVR+ Sbjct: 170 RLGITRNTAQTHRSHILRKLRVGNSARLAAYAVRHG 205 >gi|159901595|ref|YP_001547841.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894634|gb|ABX07713.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 73 Score = 41.6 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ R++E L ++EGKT IAV+LGI +TV Y+ I + R+ A+ + Sbjct: 7 LSPRKMEILALVAEGKTDRHIAVLLGIGESTVKTYLHEIYTLLRVQNRAAAVYW 60 >gi|71737566|ref|YP_275380.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558119|gb|AAZ37330.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323892|gb|EFW79976.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328029|gb|EFW84034.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875642|gb|EGH09791.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 220 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + + +M++ +G + + VR Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213 Query: 244 NIV 246 I+ Sbjct: 214 RII 216 >gi|68535465|ref|YP_250170.1| LuxR family transcriptional regulator [Corynebacterium jeikeium K411] gi|68263064|emb|CAI36552.1| putative transcriptional regulator (LuxR family) [Corynebacterium jeikeium K411] Length = 285 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 223 KLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 280 >gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10] gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10] gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis] gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004] gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038] gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 247 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W S GKT EIA+I I+ TV +I ++++K AI V I Sbjct: 182 LSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEI 241 Query: 246 V 246 + Sbjct: 242 I 242 >gi|295084625|emb|CBK66148.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 202 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 137 LSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 196 Query: 246 V 246 + Sbjct: 197 I 197 >gi|257484713|ref|ZP_05638754.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 214 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT R++E L I GK++ EIA LG+S T+ + + +M++ +G + + VR Sbjct: 148 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 207 Query: 244 NIV 246 I+ Sbjct: 208 RII 210 >gi|261407019|ref|YP_003243260.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283482|gb|ACX65453.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 601 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++LT RE+E L ++SEG IA L +S TV NY +S+ K + R A+ A Sbjct: 538 YDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKA 594 >gi|23094404|emb|CAD28140.1| putative LuxR-like transcriptional regulator [Rhodococcus opacus] Length = 413 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L ++ GK + IA LGIS +T+ ++AS+++K R A A ++ I Sbjct: 345 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 404 Query: 246 V 246 V Sbjct: 405 V 405 >gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae B728a] gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae] gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae pv. syringae B728a] Length = 247 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+ L W++ GK EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 87 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 41/57 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + +++G T+++IA L IS+ TV+N+I++I+ KT+T R + +A++ Sbjct: 12 LSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRVELVRWALQ 68 >gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG ++ EIA L IS TV + +I+ K + R+ YA+R + Sbjct: 158 LTEREDEVLKLIAEGHSTREIARELTISYKTVERHRENILAKLGLRDRTQVTRYAIRAGL 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|317124594|ref|YP_004098706.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588682|gb|ADU47979.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 540 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L ++ G+T+ +IA L +S TV ++++I K A +R+ A AYA +++ Sbjct: 481 TAREAEVLRLVASGRTNPQIAAELFLSDKTVARHLSNIFTKIAVTSRTAAAAYAREHDLA 540 >gi|307277198|ref|ZP_07558302.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] gi|306506128|gb|EFM75294.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] Length = 197 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +EG EIA L ISR TVNN++ SI K + AI A+ I Sbjct: 132 LSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGI 191 Query: 246 V 246 + Sbjct: 192 I 192 >gi|302524687|ref|ZP_07277029.1| predicted protein [Streptomyces sp. AA4] gi|302433582|gb|EFL05398.1| predicted protein [Streptomyces sp. AA4] Length = 499 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + LT ++ G T EIA LGIS TV + + K + R+ AI YA + + Sbjct: 174 LTPRESDVLTAVARGLTDAEIAGTLGISTTTVEAHYERVCAKLRLRDRAAAIVYAFDHGL 233 Query: 246 V 246 V Sbjct: 234 V 234 >gi|260578331|ref|ZP_05846246.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium ATCC 43734] gi|258603512|gb|EEW16774.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium ATCC 43734] Length = 288 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 226 KLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 283 >gi|254509824|ref|ZP_05121891.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium KLH11] gi|221533535|gb|EEE36523.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium KLH11] Length = 215 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ E+A+ L IS TV + +I RK + +G YA+ + + Sbjct: 148 LTGREQTILLELAQGKSNKEVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 207 Query: 246 V 246 + Sbjct: 208 L 208 >gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 74 Score = 41.6 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELLR 68 >gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 D+R TF + +R G + + R + +W + A +N+ S DV L Sbjct: 119 DHRGAMGTFSL--VRGGPPISPEELRRTEPEMIWLCQFVHATMSNLIVS-DVMPSGAMRL 175 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + RE E L W +EGKT+ E+A IL ++ V +I + M K ++ A A Sbjct: 176 SLREKEVLHWTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAA 230 >gi|300789929|ref|YP_003770220.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799443|gb|ADJ49818.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 200 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE + L ++EG ++EIA L S TV N + +M + R+ A+AYA+R Sbjct: 140 LAARECDVLRLVAEGFGTEEIAAKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAGA 199 Query: 246 V 246 + Sbjct: 200 I 200 >gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 207 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T ++ + L +++G T+ EIA L ++ TV Y+ + R+ AIAYA+R+N+ Sbjct: 147 ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNL 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|167031635|ref|YP_001666866.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166858123|gb|ABY96530.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 258 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD-----FE-LTGREVECLTWISEGKTSDEIAVIL 210 D L++ A Q ++ DV + FE L+ R++E +S+GKT+ +IA L Sbjct: 155 DELYQDLEKARGQGTHRRASDVEESESELPAAFEKLSPRQLEVARLVSKGKTNYQIACEL 214 Query: 211 GISRNTVNNYIASIMRKTATKTRS 234 GI+ NTV Y++ ++R T R+ Sbjct: 215 GITENTVKLYVSQVLRLTHMHNRT 238 >gi|29830918|ref|NP_825552.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608031|dbj|BAC72087.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 219 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ EI L ++ T+ NY++S++ K + RS A AY R Sbjct: 157 LTDQERRILDLIGEGLTNREIGERLHLAEKTIKNYVSSLLSKLGMQRRSQAAAYVAR 213 >gi|329934268|ref|ZP_08284347.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329305864|gb|EGG49719.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 937 Score = 41.6 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+GRE + L ++ +T++EIA L +S NTV ++ S RK A R A+ A Sbjct: 876 ELSGRERDVLRRLARMRTTEEIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVNRA 931 >gi|302340566|ref|YP_003805772.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637751|gb|ADK83178.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + W KD LT RE E IS G + EIA L I+ TV NY++SI+ K K R I Sbjct: 149 IEWYKD--LTKREKEIFKLISRGYDNTEIADELCIAYQTVRNYVSSIISKLGIKNRYEII 206 Query: 238 AYAVR 242 A R Sbjct: 207 KLANR 211 >gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 227 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ G ++ EIA L IS TV ++ ++ KT ++ R A+ +A ++++ Sbjct: 157 LTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHAVLFAFKHHL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 234 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L W++ G+ EIA LG+S TV N++ ++ T + A+ A R Sbjct: 172 LSAREREVLRWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRG 230 >gi|4322356|gb|AAD16025.1| regulatory protein CsgD [Escherichia coli] Length = 83 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 2 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 61 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 62 FKKIAVKNRTQAVSWA 77 >gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] Length = 233 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L W++ GK+ +I IL IS TV ++ S K T + A+ AV + Sbjct: 170 LSTREVEILQWVAAGKSQQDIGDILSISHRTVEVHLRSSREKLCALTTAQAVGRAVGLGL 229 Query: 246 V 246 + Sbjct: 230 I 230 >gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] Length = 267 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE++CL+ IS+G T +I+ L +S TVN + SI K + + A++ A R Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFR 262 >gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 87 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 40/60 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +L+ RE++ + ++ G ++EI+ L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 9 NHQLSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQ 68 >gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] Length = 243 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G L+ RE E L WI+ GK E+A IL IS TV N++ + R+ + + A+ Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232 Query: 238 AYAVR 242 A A+R Sbjct: 233 ARALR 237 >gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 247 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+ L W++ GK EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 213 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A + Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|294667407|ref|ZP_06732625.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602848|gb|EFF46281.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 923 Score = 41.6 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 37/58 (63%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R GA+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGLL 909 >gi|294627134|ref|ZP_06705722.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598567|gb|EFF42716.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 926 Score = 41.6 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 37/58 (63%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R GA+A A++ ++ Sbjct: 855 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGLL 912 >gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 246 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE ECL WI+EGK++ I+ +L IS TV +I ++ K TR A V Sbjct: 184 KLSRREHECLKWIAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQAAVVGV 240 >gi|134098410|ref|YP_001104071.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911033|emb|CAM01146.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 31/46 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 EL+GREVE L +++G+++ EI L +S TV ++++ I RK T Sbjct: 176 ELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGT 221 >gi|21244146|ref|NP_643728.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109777|gb|AAM38264.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 923 Score = 41.6 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 37/58 (63%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R GA+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGLL 909 >gi|319791419|ref|YP_004153059.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593882|gb|ADU34948.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 482 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L IS G ++ E A +LGIS +TV ++ +I RK TR+ A A+ Sbjct: 422 LSSREIEVLGRISLGDSNKEAARVLGISPSTVRAHLENIFRKLECTTRAAATLKAL 477 >gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I G ++ EIA L I+ +TV +I + K + R+GA+ YA + + Sbjct: 160 LTAREREILGLIGAGLSNAEIAARLFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQTGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|218129118|ref|ZP_03457922.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697] gi|217988753|gb|EEC55072.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697] Length = 192 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +L+ RE+E L I++G + EIA L IS TV + +I+ K K+ SG YAV Sbjct: 124 NHDLSAREIEVLALITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 183 Query: 243 NNIV 246 + V Sbjct: 184 HGYV 187 >gi|254488693|ref|ZP_05101898.1| DNA-binding response regulator, LuxR family [Roseobacter sp. GAI101] gi|214045562|gb|EEB86200.1| DNA-binding response regulator, LuxR family [Roseobacter sp. GAI101] Length = 233 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Query: 152 RIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 R++ +D L + + + + D + + LT ++ L I EGK + + Sbjct: 126 RLVFKDALARVKAGGIFTPSGYVDGREPDGSDANLARLASLTNQQYRILQLICEGKLNKQ 185 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 IA L I+ TV ++ +IMRK ++R+ A+ A Sbjct: 186 IAFELSIAETTVKAHVTAIMRKLGVQSRTQAVLVA 220 >gi|188585380|ref|YP_001916925.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350067|gb|ACB84337.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 232 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ELT RE+E + G ++ +IA L I++ TV NYI +I K K R+ A+ Y Sbjct: 172 ELTQREIEIAQLMVAGLSNKKIAEKLFITQGTVKNYITNIYSKLGVKERTSAVLY 226 >gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 510 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|77410614|ref|ZP_00786974.1| response regulator [Streptococcus agalactiae CJB111] gi|77163329|gb|EAO74280.1| response regulator [Streptococcus agalactiae CJB111] Length = 196 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E++ L+ I++GKTS EIA L +S TV NY ++I K R A+ A Sbjct: 136 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190 >gi|311899311|dbj|BAJ31719.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 219 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 LT RE E ++EG+T+ +IA L IS TV ++ASI RK + R G Sbjct: 156 LTRREREVAGKVAEGRTNADIAGELFISAGTVKTHVASIQRKLGVRNRVG 205 >gi|167462440|ref|ZP_02327529.1| Two-component response regulator ComA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383891|ref|ZP_08057631.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151606|gb|EFX44686.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 209 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Query: 167 AYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A +F+ + G+D LT E+ + I +G T+++IA ++ +S+ +V+NY+ I Sbjct: 127 AISLELFRQLQLGKGEDDGTALTDEEINIMNQIIKGATNEQIAEVIHMSKRSVDNYVRKI 186 Query: 225 MRKTATKTRSGAI 237 K K+R+ AI Sbjct: 187 YDKFGVKSRAQAI 199 >gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] Length = 247 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W S GKT EIA+I I+ TV +I ++++K AI V I Sbjct: 182 LSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEI 241 Query: 246 V 246 + Sbjct: 242 I 242 >gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 240 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GK + EI+VI IS TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELETLQWARDGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|296127965|ref|YP_003635215.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296019780|gb|ADG73016.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 78 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + H LT RE L ++E T +EIA L ++RNTV + + S+ RK TR+ Sbjct: 7 SLNPHILGTHSLTRRERVVLAELTEDVTLEEIATRLFVTRNTVKSQVRSVYRKIGVSTRA 66 Query: 235 GAIAYAVRNNI 245 A+A+A + I Sbjct: 67 EAVAWAEAHGI 77 >gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 KD LT RE + L ++ GK++++IA L I+ T N+++ I+ K RS A+ +A Sbjct: 153 KDL-LTAREFDVLCQMAAGKSNEQIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAY 211 Query: 242 RN 243 R Sbjct: 212 RE 213 >gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 200 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 33/65 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + LT RE E L EG + EIA L +S TV NY++ ++K K R AI Sbjct: 133 WEAENPLTEREREVLRLAREGLPAGEIASRLFLSAGTVRNYLSEAIQKLDAKNRIDAIGI 192 Query: 240 AVRNN 244 A +N Sbjct: 193 AEKNG 197 >gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby] gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing CheY-like receiver domain and HTH DNA-binding domain [Legionella pneumophila str. Corby] Length = 267 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE++CL+ IS+G T +I+ L +S TVN + SI K + + A++ A R Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFR 262 >gi|329928337|ref|ZP_08282208.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937894|gb|EGG34299.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 599 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++LT RE+E L ++SEG IA L +S TV NY +S+ K + R A+ A Sbjct: 536 YDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKA 592 >gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E + W++ G+++ EIA L +S +TV +++ M K + R+ + +A+ + Sbjct: 160 DLTEREREMVAWVATGRSNAEIAAELVVSPDTVRTHVSRAMVKLHARDRAQLVVFAIESG 219 Query: 245 I 245 + Sbjct: 220 L 220 >gi|317474899|ref|ZP_07934168.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316908802|gb|EFV30487.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 192 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +L+ RE+E L I++G + EIA L IS TV + +I+ K K+ SG YAV Sbjct: 124 NHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 183 Query: 243 NNIV 246 + V Sbjct: 184 HGYV 187 >gi|298483146|ref|ZP_07001326.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. D22] gi|298270663|gb|EFI12244.1| transcriptional regulator, LuxR family domain protein [Bacteroides sp. D22] Length = 200 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L IS TV + +I K K+ SG YAV N Sbjct: 135 LSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 216 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ I Sbjct: 155 LTEREREVLALIADGRSNREIARALILSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 214 >gi|291085584|ref|ZP_06571117.1| putative csgAB operon transcriptional regulatory protein [Citrobacter youngae ATCC 29220] gi|291071350|gb|EFE09459.1| putative csgAB operon transcriptional regulatory protein [Citrobacter youngae ATCC 29220] Length = 159 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 67 VLRGECYFSQKLASYLITHSGNYRYNSTESAILTHREKEILNKLRIGASNIEIARSLFIS 126 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 NTV ++ ++ +K A K R+ A+++A N Sbjct: 127 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 156 >gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 221 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G T+ EIA L ++ TV ++ SI K + R+ AI YA + + Sbjct: 154 LTEREHDVLRLMARGATNAEIAATLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGV 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 203 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R AI A RN Sbjct: 142 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 199 >gi|227541066|ref|ZP_03971115.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227183326|gb|EEI64298.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 280 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 218 KLSARELDVLSCVALGHTNVEAAKEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 275 >gi|86157284|ref|YP_464069.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773795|gb|ABC80632.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 211 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG + IA LGIS +T ++ +I+ K +R+ AI A R + Sbjct: 149 LTPREREVLALVAEGLGNKGIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLGL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] Length = 240 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L W S GKT +EI+ IL I TV +I +I+ K AI A+ Sbjct: 179 LSPREKEVLFWASVGKTYNEISTILSIREGTVKFHIRNIINKLGVANAKHAITRAME 235 >gi|76797806|ref|ZP_00780071.1| response regulator [Streptococcus agalactiae 18RS21] gi|76586820|gb|EAO63313.1| response regulator [Streptococcus agalactiae 18RS21] Length = 186 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E++ L+ I++GKTS EIA L +S TV NY ++I K R A+ A Sbjct: 126 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 180 >gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 217 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E+E L +++G ++ EIA LG+S TV N ++ + K + R+ A +AVR I Sbjct: 156 ELEILQLLAQGCSNQEIADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAGI 211 >gi|302524738|ref|ZP_07277080.1| two-component system response regulator [Streptomyces sp. AA4] gi|302433633|gb|EFL05449.1| two-component system response regulator [Streptomyces sp. AA4] Length = 218 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L I +G + EIA L IS TV +I ++ K +R+ A+ YA++ Sbjct: 151 DLSLTAREREILGLIGDGLRNPEIAAALVISEATVKTHINNLFAKAGFHSRADAVRYALK 210 >gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++ GK++ EIA L +S+ TV N++ SI K R+ A+ A R Sbjct: 165 ELTQREREILDLLASGKSNAEIARRLFLSQKTVKNHLTSIFAKLQVADRTQAVVRARRAG 224 Query: 245 I 245 + Sbjct: 225 L 225 >gi|21223502|ref|NP_629281.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|9967644|emb|CAC05762.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 204 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++G T+ E+A L +S+ TV NY+++ ++K A + R+ A+ A RN Sbjct: 144 LTDREREILRAAADGSTNAELASALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVA-RNK 201 >gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 220 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 179 HWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H G + ELT RE E L ++ G ++ EIA L ++ +TV +++ ++ K + R+ A Sbjct: 149 HPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAA 208 Query: 238 AYAVRNNIV 246 +A N +V Sbjct: 209 VFAYENRLV 217 >gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 203 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T ++ + L +++G T+ EIA L ++ TV Y+ + R+ AIAYA+R+N+ Sbjct: 143 ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNL 202 Query: 246 V 246 + Sbjct: 203 I 203 >gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] Length = 211 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L I+ TV ++++I+ K R+ A YA ++ Sbjct: 148 ELTRREYEVLLLIAKGYSNQEIADELFITLKTVKTHVSNILAKLEVSDRTQATIYAYQHK 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074] gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074] gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 163 GLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 GL+A++ A D G E LTGRE E L ++ G ++DEIA L +S TV Sbjct: 135 GLIASFLAQSGHGADERPGAREERLAALTGREREVLVHVAGGLSNDEIAGRLQVSPLTVK 194 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ M K + R+ + A +V Sbjct: 195 THVNRAMAKLGARDRAQLVVTAYETGLV 222 >gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG ++ E+A L +S TV +++A I+ K + R A+ A R + Sbjct: 157 LTARELEVLRLLAEGLSNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTGV 216 >gi|255325933|ref|ZP_05367025.1| LuxR-family transcriptional regulator [Corynebacterium tuberculostearicum SK141] gi|311740234|ref|ZP_07714066.1| LuxR family bacterial regulatory protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255297145|gb|EET76470.1| LuxR-family transcriptional regulator [Corynebacterium tuberculostearicum SK141] gi|311304789|gb|EFQ80860.1| LuxR family bacterial regulatory protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 279 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273 Query: 242 R 242 R Sbjct: 274 R 274 >gi|226310338|ref|YP_002770232.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093286|dbj|BAH41728.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 233 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 T RE++ + I++G ++ EIA L IS TV NYI SI+ KTA + R+ Y Sbjct: 170 FTERELDVMKQIAKGLSNKEIAKKLFISEGTVANYITSILNKTALEHRTQIAIY 223 >gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 213 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 6/81 (7%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL+ +AN + G+ LT RE E L I++G+++ EIA L +S TV ++++ Sbjct: 136 LLSQEEANSGQ------GRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSN 189 Query: 224 IMRKTATKTRSGAIAYAVRNN 244 I+ K R+ A +AVR+ Sbjct: 190 ILMKLDLADRTQAALWAVRHG 210 >gi|88807455|ref|ZP_01122967.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88788669|gb|EAR19824.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 261 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L + G T+ EIA L +S TV ++++S++RK K R+ A+ A R Sbjct: 190 DLTMREEDVLRGLCRGMTNLEIAEDLLVSIETVKSHVSSLLRKLPAKDRTAAVVTAFREG 249 Query: 245 IV 246 +V Sbjct: 250 LV 251 >gi|328885899|emb|CCA59138.1| transcriptional regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 244 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D H L RE + L +SEG + EIA S TV N + ++ + + R+ Sbjct: 173 ALDPHAASLSTLAPREADMLRLVSEGLDTAEIARKTSYSERTVKNVLHEVITRLQLRNRT 232 Query: 235 GAIAYAVRNNIV 246 A+ YA+RN ++ Sbjct: 233 HAVGYALRNGLI 244 >gi|318061656|ref|ZP_07980377.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076898|ref|ZP_07984230.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 214 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D L+ RE E L + ++G EIA G+S TV NY++S + K + R Sbjct: 143 AADAIAAGDSPLSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRH 202 Query: 235 GAI 237 A+ Sbjct: 203 AAV 205 >gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 201 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D LT REVE L + G T+ EI L ++ TV NY++S ++K ++R AI A Sbjct: 137 EDNPLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIA 195 >gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 243 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G L+ RE E L WI+ GK E+A IL IS TV N++ + R+ + + A+ Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232 Query: 238 AYAVR 242 A A+R Sbjct: 233 ARALR 237 >gi|295837594|ref|ZP_06824527.1| two-component system response regulator TcsR2 [Streptomyces sp. SPB74] gi|295826582|gb|EDY45254.2| two-component system response regulator TcsR2 [Streptomyces sp. SPB74] Length = 214 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 33/66 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D L+ RE E L + ++G EIA G+S TV NY++S + K + R Sbjct: 143 AADAIAAGDSPLSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRH 202 Query: 235 GAIAYA 240 A+ A Sbjct: 203 AAVRAA 208 >gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 213 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207 >gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus rhamnosus GG] gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus GG] Length = 202 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R AI A RN Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198 >gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] Length = 210 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA ++ Sbjct: 148 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|255034530|ref|YP_003085151.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254947286|gb|ACT91986.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 210 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + KD+ LT RE + L ++ +G + IA IS NTVNN+I +I K + + Sbjct: 139 SAESEAKKDYHLTEREKQILGFLVKGYSYKLIAAECTISYNTVNNHIRNIYDKLYVNSAT 198 Query: 235 GAIAYAVRNNIV 246 A++ A++ +V Sbjct: 199 EAVSLAIKERLV 210 >gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 197 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG T+ EIA L IS TV + ++++ K R+ + YA+R + Sbjct: 135 LTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVRYAIRQGL 194 Query: 246 V 246 V Sbjct: 195 V 195 >gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2] gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] Length = 243 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G L+ RE E L WI+ GK E+A IL IS TV N++ + R+ + + A+ Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232 Query: 238 AYAVR 242 A A+R Sbjct: 233 ARALR 237 >gi|227489471|ref|ZP_03919787.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227090649|gb|EEI25961.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 280 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 218 KLSARELDVLSCVALGHTNVEAAKEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 275 >gi|226305790|ref|YP_002765750.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184907|dbj|BAH33011.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 212 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L ++EGK++ EIA L + TV ++A++M KT R Y ++N Sbjct: 153 LTDRESQVLALVAEGKSNQEIADTLHLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210 >gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] Length = 217 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+ L I+ G S EIA +GIS TV ++ +I K +RS A+A A+ I Sbjct: 153 ITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGI 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|90426293|ref|YP_534663.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108307|gb|ABD90344.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 223 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +I L AA M K D + LT ++V L +SEG + +IA LG+S T+ + Sbjct: 134 DIDLNAASDPEMTKLRD----RLITLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAH 189 Query: 221 IASIMRKTATKTRSGAIAYAVR 242 +++I++K ++R+ A+ A + Sbjct: 190 VSAILQKLGVESRTQAVIAAAK 211 >gi|290962906|ref|YP_003494088.1| response regulator [Streptomyces scabiei 87.22] gi|260652432|emb|CBG75565.1| putative response regulator [Streptomyces scabiei 87.22] Length = 219 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L ++EG +S EIA +L IS TV + A+++ K + R YA+R + Sbjct: 157 ITEREEEILKLVAEGHSSREIARLLVISVKTVERHRANLLHKLGLRDRLDLTRYAIRTGL 216 >gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 438 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 172 MFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +FK Y K +ELT RE++ L + EG EIA L +S TV NY +SI K Sbjct: 363 LFKEYSSMPKKPPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQV 422 Query: 231 KTRSGAIAYAV 241 R A+ A+ Sbjct: 423 SGRGEAVKKAL 433 >gi|227833967|ref|YP_002835674.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum ATCC 700975] gi|262183544|ref|ZP_06042965.1| transcriptional regulator, LuxR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227454983|gb|ACP33736.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum ATCC 700975] Length = 279 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273 Query: 242 R 242 R Sbjct: 274 R 274 >gi|224026499|ref|ZP_03644865.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM 18228] gi|224019735|gb|EEF77733.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM 18228] Length = 194 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + EL+ RE+E L I++G + EIA L IS TV ++ +I K K+ SG YAV Sbjct: 126 EHELSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLAIYAV 184 >gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 510 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 201 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 30/58 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L + G +EIA L +SR TV NY++S + K R A+ A Sbjct: 138 DSPLTPREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRHEAVQLA 195 >gi|332188808|ref|ZP_08390518.1| sigma-70, region 4 family protein [Sphingomonas sp. S17] gi|332011161|gb|EGI53256.1| sigma-70, region 4 family protein [Sphingomonas sp. S17] Length = 239 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E + WI+ G+ ++A +LG+S T+ N++ I + + + AI VR+ Sbjct: 176 QLSAREREVIRWIASGRRQADVAALLGLSERTIENHLRRIRNRLGAASTAQAIHLLVRSG 235 >gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 201 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R AI A RN Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198 >gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 243 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G L+ RE E L WI+ GK E+A IL IS TV N++ + R+ + + A+ Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232 Query: 238 AYAVR 242 A A+R Sbjct: 233 ARALR 237 >gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b] Length = 267 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE++CL+ IS+G T +I+ L +S TVN + SI K + + A++ A R Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFR 262 >gi|289680012|ref|ZP_06500902.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. syringae FF5] Length = 73 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 9 QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 68 Query: 245 IV 246 ++ Sbjct: 69 VI 70 >gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC 53653] Length = 213 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG + EIA L S TV N + + + + R+ A+AYA+R Sbjct: 152 LTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDLRNRAHAVAYALREGY 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|256377037|ref|YP_003100697.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921340|gb|ACU36851.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 208 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +SEG + EIAV + S TV N + + + + R+ A+ Y +R+ + Sbjct: 148 LTPREADMLRLVSEGFGTAEIAVKMSFSERTVKNVLHEVTTRLNLRNRAHAVGYVMRHGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp. K90mix] Length = 232 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G+T+ IA L IS +TV +++ +I RK K R+ AI +A Sbjct: 155 LTQRELEILAMLGSGETNMNIAKQLFISEHTVKSHLYNIFRKIEVKNRTQAINWA 209 >gi|223934624|ref|ZP_03626544.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896579|gb|EEF63020.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 226 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 29/53 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT RE E L ++ G T E+A L IS TV NYI I K TR+ A+ Sbjct: 162 ELTAREREVLELLARGATPKEVAAELNISWQTVRNYIRFIYDKLHVHTRTDAV 214 >gi|67923468|ref|ZP_00516945.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] gi|67854703|gb|EAM49985.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] Length = 94 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 155 LRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + L + L ++AN+ + +H ELT E + + +++G ++ E+A L + Sbjct: 1 MESSLKQANRLMLHKANLSLDEGSRIHVPNHVELTPTETKVVQLVAKGLSNREVAEKLSV 60 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 SR T+ +++++++ KT+ K R+ +A+ N++ Sbjct: 61 SRRTIESHVSNMLNKTSLKNRTELARWAMENSMA 94 >gi|310659628|ref|YP_003937349.1| transcriptional regulator yhcz [Clostridium sticklandii DSM 519] gi|308826406|emb|CBH22444.1| putative transcriptional regulator YhcZ [Clostridium sticklandii] Length = 222 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 KDF+L T RE E + IS+GK++ EIA L +S TV N+I +I++K + R+ Sbjct: 152 KDFDLLTRREYEIVGLISQGKSNLEIADDLFLSERTVKNHIHNILKKVNLQDRTQIAIAN 211 Query: 241 VRNNIV 246 +R IV Sbjct: 212 LRYRIV 217 >gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 224 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 179 HWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H G + ELT RE E L ++ G ++ EIA L ++ +TV +++ ++ K + R+ A Sbjct: 153 HPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAA 212 Query: 238 AYAVRNNIV 246 +A N +V Sbjct: 213 VFAYENRLV 221 >gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] Length = 206 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA ++ Sbjct: 144 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 203 Query: 245 I 245 + Sbjct: 204 L 204 >gi|308176449|ref|YP_003915855.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307743912|emb|CBT74884.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 432 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ L GRE E L ++ G+ + I+ LGIS NTV ++ ++ +K +R+ A+A A Sbjct: 366 EWSLGGREFEVLQLLAAGQRNRAISQALGISENTVKFHVRNLFKKMGVGSRAQAVALA 423 >gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|302536569|ref|ZP_07288911.1| two-component system response regulator [Streptomyces sp. C] gi|302445464|gb|EFL17280.1| two-component system response regulator [Streptomyces sp. C] Length = 232 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH F L+ REVE + I+ G + +IA IS TV N+I I K + +RS AI Sbjct: 158 VHNSVVFGLSSREVEIMDLIASGMNNQQIAGACFISEKTVKNHINRIFAKLQSTSRSEAI 217 Query: 238 A 238 A Sbjct: 218 A 218 >gi|239983271|ref|ZP_04705795.1| response regulator [Streptomyces albus J1074] Length = 202 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G LT REV+ + I+EG + EIA L S TV N I + + + R+ A+A Sbjct: 135 QGGPSLGLTPREVDVVRLIAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVA 194 Query: 239 YAVRNN 244 +A+R Sbjct: 195 FALREG 200 >gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 592 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G ++ LT RE+E L +S+G IA L +S TV NY +++ K K R A+ A Sbjct: 526 GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 585 >gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 202 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R AI A RN Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198 >gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 205 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++G T+ E+A L +S+ TV NY+++ ++K A + R+ A+ A Sbjct: 145 LTDREREVLRAAADGSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIA 199 >gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307] gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307] Length = 92 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + ++ T+ EIA+ L IS+ TV+N++++I KT ++ R + +A+ N Sbjct: 16 IHLSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSN 75 >gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 172 MFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 M + D H ELTGRE E + +EG+++ EIA IL +S TV +I M K Sbjct: 142 MSPAPDAHLAPPERLSELTGREREVMGLAAEGRSNTEIAEILTLSPLTVRTHIHRAMTKL 201 Query: 229 ATKTRSGAIAYAVRNNIV 246 + R+ + A + + Sbjct: 202 GARDRAQLVVIAYQTGLA 219 >gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis AMD] gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis AMD] Length = 260 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N Sbjct: 197 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENG 256 Query: 245 IV 246 +V Sbjct: 257 LV 258 >gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 223 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++EG ++ E+A L I TV ++ +I+ K + R+ A+ YA ++ Sbjct: 157 QLTDREREVLLLLAEGYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHG 216 Query: 245 IV 246 +V Sbjct: 217 LV 218 >gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] Length = 207 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +VH K E LT +E+ L I+ G + EIA +GI+ TV ++ +I K Sbjct: 130 YKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAHLTNIYNKLGV 189 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 190 NSRSEAVAVSIERKLI 205 >gi|291287073|ref|YP_003503889.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884233|gb|ADD67933.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 193 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE E L I+ GKTS EI +L IS+NTV+ + +++K + + YA Sbjct: 129 RNGSLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKLNLANSASLVHYAF 188 Query: 242 RNNIV 246 + +V Sbjct: 189 VSGLV 193 >gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 163 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I G ++ EIA L IS TV ++I I K + R+ AI Y+ + Sbjct: 99 DLTTRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHG 158 Query: 245 IV 246 IV Sbjct: 159 IV 160 >gi|83954912|ref|ZP_00963590.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. NAS-14.1] gi|83840638|gb|EAP79810.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. NAS-14.1] Length = 213 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E LT IS+G + E+A L I+ TV YI + RK +R+ A +A R Sbjct: 146 DGRLTERETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANR 205 >gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 510 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|319442522|ref|ZP_07991678.1| LuxR family transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 281 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 219 KLSARELDVLSCVALGHTNVEAADEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276 >gi|284041678|ref|YP_003392018.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945899|gb|ADB48643.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 435 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 D+ LT R++E ++ G T+ E+A +LGIS +TVN ++ +I R+ Sbjct: 362 DYGLTVRQLEIARLVASGSTNREVAELLGISDHTVNTHLRAIFRR 406 >gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 222 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +LA A S + FE LT RE+E L +++G + EIA L IS NTV +++ Sbjct: 137 ILARLLAETRPSRQKAPAEPFEALTLREIEVLAMLADGLGNKEIARQLDISDNTVKFHLS 196 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 SI K R+ A+ +R+ + Sbjct: 197 SIFGKLGATNRTEAVMLGMRHGFI 220 >gi|172041269|ref|YP_001800983.1| LuxR family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852573|emb|CAQ05549.1| putative transcriptional regulator (LuxR family) [Corynebacterium urealyticum DSM 7109] Length = 291 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 229 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 286 >gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 247 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 42/92 (45%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +R L E L A A + ELT RE + L ++EG + EIA L S Sbjct: 154 IRALLSERTLATATPAQTSAPTPLPPPIKVELTPREQQVLEKVAEGLMNKEIAKQLQTSV 213 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V Y+ ++ KT T +R+ + YA+ ++ Sbjct: 214 RNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 245 >gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 217 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F DV+ L+ RE E ++ G T+ EIA L IS TV + A+I+RK + Sbjct: 142 FDGVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLEN 201 Query: 233 RSGAIAYAVRNNIV 246 R+ + YA+ ++++ Sbjct: 202 RADLVRYAIHHHLI 215 >gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA +S TV ++++I+ K R+ A +A Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWA 207 Query: 241 VRNN 244 VRN Sbjct: 208 VRNG 211 >gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 395 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + G ++ EIA L I+ TV +++ I+RK R+ AIA+A++ Sbjct: 336 ELTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILRKYGAVNRAQAIAWALQGT 395 >gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 243 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G L+ RE E L WI+ GK E+A IL IS TV N++ + R+ + + A+ Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232 Query: 238 AYAVR 242 A A+R Sbjct: 233 ARALR 237 >gi|332670631|ref|YP_004453639.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339669|gb|AEE46252.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 144 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+ L +++G+++ I LG+S TV +++A I RK T R+ +A + R Sbjct: 82 ELTAREISVLKLVADGRSNRLIGEELGLSALTVKSHLARISRKLGTGDRAELVAISFRGG 141 Query: 245 IV 246 ++ Sbjct: 142 VL 143 >gi|330940323|gb|EGH43432.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 70 Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 6 QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 65 Query: 245 IV 246 ++ Sbjct: 66 VI 67 >gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 231 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L ++ G T+ EIA L IS TV ++I I K + R+ AI +A + Sbjct: 166 ELTDRELEVLRGLASGWTNSEIAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHG 225 Query: 245 IV 246 IV Sbjct: 226 IV 227 >gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 217 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+ L I+ G S EIA +GIS TV ++ +I K +RS A+A A+ I Sbjct: 153 ITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGI 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G + EIA +L + TV ++ ++ K + R+ AIA+A + + Sbjct: 159 LTPRETEVLQLVARGHNNAEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIAFAYDSGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 201 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D LT REVE L + G T+ EI L ++ TV NY++S ++K ++R AI A Sbjct: 137 EDNPLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIA 195 >gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] Length = 216 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 152 QLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 211 Query: 245 I 245 I Sbjct: 212 I 212 >gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis V583] gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1] gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2] gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3] gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5] gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96] gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704] gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1] gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6] gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG] gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis V583] gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1] gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2] gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3] gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5] gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96] gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704] gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1] gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6] gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG] gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62] gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF] Length = 210 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA ++ Sbjct: 148 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|124266648|ref|YP_001020652.1| LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124259423|gb|ABM94417.1| transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 197 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E + EG+TS +I +LG+S TV+ Y A ++RK A + + + VR Sbjct: 140 LTAREREVAALLIEGQTSKQIGKVLGVSHRTVDIYRARLLRKYAAGSTAELVNKLVRG 197 >gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 211 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE L I++G T EIA LGIS TV Y K KTR+ + YA+ Sbjct: 146 RHVRLTERERSVLARIAQGCTYKEIAEELGISDKTVATYRERAAEKLGLKTRAELVRYAL 205 Query: 242 RNNIV 246 ++ ++ Sbjct: 206 QHGLI 210 >gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] Length = 921 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D+H EL+ RE++ L I+EG+ + EIA L IS TV +I +I K +R+ Sbjct: 853 SPDIH----GELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 908 Query: 235 GAIAYAVRNNIV 246 A++ A+ ++ Sbjct: 909 QAMSRALEMKLL 920 >gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 191 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + I+EG +S EIA L IS TV+ + A+IM+K R +A+R + Sbjct: 129 LTPREEEIVKLIAEGHSSREIADTLVISAKTVDRHRANIMQKLGMHDRLDLTRFAIRVGL 188 Query: 246 V 246 V Sbjct: 189 V 189 >gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] Length = 213 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 7/95 (7%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G I+L+ + + LL+ +AN + + LT RE E L I++G+++ EIA L Sbjct: 124 GHILLQPEVAD-ALLSQEEANSGPA------RAGSLTDREREVLGLIADGRSNREIARAL 176 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S TV ++++I+ K R+ A +AVR+ + Sbjct: 177 VLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGV 211 >gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 223 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 203 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R AI A RN Sbjct: 142 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 199 >gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467] Length = 206 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA ++ Sbjct: 144 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 203 Query: 245 I 245 + Sbjct: 204 L 204 >gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72] gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp. BH72] Length = 208 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT + L +++GKT+ EIA +LG+S TV ++++I R R+ A+ R+ Sbjct: 145 FGLTAAQTRVLELLAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNRAQALVVIARH 204 Query: 244 N 244 Sbjct: 205 G 205 >gi|94969375|ref|YP_591423.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551425|gb|ABF41349.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 219 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L + G+++ EI LGI TV ++A +MRK + R +A+ +++ Sbjct: 155 FTDREKEVLELLVAGRSNKEIGSALGIEERTVKAHVAKLMRKVGVQNRIALSVHAITHSL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] Length = 215 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L I++G + EIA L +S TV + A IM K K+R + YA++ + Sbjct: 153 LSQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKLNLKSRPELVEYALKKKL 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|302530143|ref|ZP_07282485.1| response regulator [Streptomyces sp. AA4] gi|302439038|gb|EFL10854.1| response regulator [Streptomyces sp. AA4] Length = 204 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE + L ++EG ++EIA L S TV N + +M + R+ A+AYA+R Sbjct: 144 LASRECDVLRLVAEGYGTEEIATKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAGA 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 214 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++ L +++G T+ EIA L +SR TV ++ +I RK A +R+ A++ A Sbjct: 153 LSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 207 >gi|290954780|ref|YP_003485962.1| luxR family regulator [Streptomyces scabiei 87.22] gi|260644306|emb|CBG67389.1| putative luxR family regulator [Streptomyces scabiei 87.22] Length = 196 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D LT R++ L + G T +EIA L +S TV NYI+S++ K + R A+ A Sbjct: 131 GGDCPLTLRQLSVLEHLDRGDTMEEIADRLCLSEGTVRNYISSVVAKMGARNRIDALRIA 190 >gi|225352424|ref|ZP_03743447.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156931|gb|EEG70300.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 218 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + ++ +EG +IA LGIS T+ ++ SI+RK KT A+A VR+N Sbjct: 158 LTVREEQIISLCAEGMLDRDIAEHLGISEATIRKHMQSILRKLNCKTSRQAVALWVRSN 216 >gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4] Length = 223 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L+ + +G + EIA L I+ TV N++++I+ K + R+ A YAVR+ I Sbjct: 158 LTEREWGVLSELGKGLNNREIAEALYITEGTVKNHVSNIISKLEVRDRTQAAIYAVRHGI 217 >gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 32/56 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + L+ RE E L +S+G EIA LGIS TV+ YI I K +TR+ A+A Sbjct: 149 EHNLSTREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIRRIYEKLQVRTRTEAVA 204 >gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 200 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W + LT RE L EG+T+ EIA LG+S TV NY++ + K R Sbjct: 134 WSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANR 187 >gi|330973427|gb|EGH73493.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 87 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 23 QLTAKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + + R A YA + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R AI A RN Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198 >gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 200 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W + LT RE L EG+T+ EIA LG+S TV NY++ + K R Sbjct: 134 WSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANR 187 >gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis] Length = 234 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W + GK++ EI+ IL S VN ++ +I K +R A A + Sbjct: 170 KLTPRERECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIATQLG 229 Query: 245 IV 246 ++ Sbjct: 230 LI 231 >gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G+++ EIA L +S TV ++ ++ K + R A+ A + + Sbjct: 166 LTGREREVLIQVARGRSNAEIAQALSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYESGL 225 Query: 246 V 246 + Sbjct: 226 I 226 >gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L ++ G+T+ EIA L IS +TV +IAS+M K + R Sbjct: 176 LTDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGARNR 223 >gi|124265774|ref|YP_001019778.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258549|gb|ABM93543.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 210 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE++ L I+ GK +IA L +S TV+ Y A ++ K A S YA+RN Sbjct: 149 KLSDRELQTLVLIASGKRLSDIAAELTLSPKTVSVYRARVLEKLALTNNSELTVYAIRNG 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 220 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG T+ E+A L IS TV N+ ++M+K + I YA R + Sbjct: 153 LTAREQEVLRMLAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 225 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L ++ G +DEIA L + R TV ++++++ K + R A+AYA R+ + Sbjct: 162 LTERELVVLRLLARGLNNDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYAYRHGL 221 >gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 162 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I G ++ EIA L IS TV ++I I K + R+ AI Y+ + Sbjct: 98 DLTTRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHG 157 Query: 245 IV 246 IV Sbjct: 158 IV 159 >gi|158318162|ref|YP_001510670.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113567|gb|ABW15764.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 238 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL A + V + FE L+ RE++ L ++ G ++ EIA+ L +S TV ++ Sbjct: 139 LLGALRTGAVADLAVR--RRFERLSERELQVLRAMARGASNREIAIELRVSERTVKAHVG 196 Query: 223 SIMRKTATKTRSGAIAYA 240 SI K + R+GAI A Sbjct: 197 SIFGKLEVRDRAGAIVLA 214 >gi|94313776|ref|YP_586985.1| putative two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357628|gb|ABF11716.1| putative two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 211 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT R++E L ++ G+++ IA LG+S NTV ++A+I+ +R AI A Sbjct: 143 KPSQLTPRQLEVLNQLNLGRSNKVIAYHLGLSENTVRVHVAAILDHLGVVSRVEAILEAQ 202 Query: 242 RNNIV 246 R +V Sbjct: 203 RRGLV 207 >gi|253998458|ref|YP_003050521.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200533|ref|YP_004039191.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985137|gb|ACT49994.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439849|gb|ADQ83955.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 214 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + LT I+ G T EIA+ L +S TV+ Y ++ K K + YA++NN+ Sbjct: 153 LSDREFQTLTLIASGLTVGEIALRLSLSVKTVSMYRTRLLEKMQLKHNAELTHYAIKNNL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|83943530|ref|ZP_00955989.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. EE-36] gi|83845762|gb|EAP83640.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. EE-36] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E LT IS+G + E+A L I+ TV YI + RK +R+ A +A R Sbjct: 146 DGRLTERETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANR 205 >gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE L ++ G+ S EIA LG+S TV ++ +I K +R+ A+A A+ Sbjct: 162 VELTERERAILIAVAHGERSKEIAQHLGVSERTVKAHLTNIYTKLNVDSRASAVASALER 221 Query: 244 NIV 246 ++ Sbjct: 222 GLL 224 >gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C] gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C] Length = 208 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L G T+ E+A LG+S+ TV NY+++ ++K A + R+ A+ A Sbjct: 148 LTDREREVLRAAEFGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVRVA 202 >gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 200 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W + LT RE L EG+T+ EIA LG+S TV NY++ + K R Sbjct: 134 WSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANR 187 >gi|333026225|ref|ZP_08454289.1| putative lysine-rich arabinogalactan protein 19 [Streptomyces sp. Tu6071] gi|332746077|gb|EGJ76518.1| putative lysine-rich arabinogalactan protein 19 [Streptomyces sp. Tu6071] Length = 266 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L ++E +T+ IA LGIS TV+ ++A + RK T+ R + A + Sbjct: 206 LTPREITVLALLAEARTASAIAQRLGISPRTVHRHLAHLYRKFGTRDRLATVLRARETGV 265 Query: 246 V 246 + Sbjct: 266 L 266 >gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli TA271] gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli TA271] Length = 148 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT RE E L I++GKT+ EIA L +SR V + +IM+K + I Sbjct: 80 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSGIELIKT 139 Query: 240 AVR 242 A+R Sbjct: 140 ALR 142 >gi|300728575|ref|ZP_07061933.1| transcriptional regulator [Prevotella bryantii B14] gi|299774144|gb|EFI70778.1| transcriptional regulator [Prevotella bryantii B14] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+E L I++GKT+ EIA S +T+N + +I +K T A+ YA R + Sbjct: 146 LTSTEIEILRSIAQGKTTKEIAAERYSSIHTINTHRKNIFKKLKVNTAHEAVKYAFRAGL 205 Query: 246 V 246 V Sbjct: 206 V 206 >gi|226361722|ref|YP_002779500.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240207|dbj|BAH50555.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 411 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L RE+E L ++ GK + IA LGIS +TV ++A +++K +R A A A+ Sbjct: 343 DLNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAG 402 Query: 245 I 245 I Sbjct: 403 I 403 >gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010] gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +S+G TS EIA +L +S TV Y++++ +K + K + A++ A I Sbjct: 155 LSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREYVSNVYKKLSVKNKMQAVSEATLLGI 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 211 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA--IAYAVR 242 ELT RE+E L I+ G ++ EIA L IS TV N++ +I+ + + R+ A + +++R Sbjct: 150 ELTERELEILDLIATGASNREIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAILVHSLR 209 Query: 243 NN 244 ++ Sbjct: 210 HS 211 >gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 211 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L RE + L I+EG T+ +IA + +S TV NY+++I+ K +R+ A YA R Sbjct: 152 LGERERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 208 >gi|70729936|ref|YP_259675.1| sensory box transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344235|gb|AAY91841.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 495 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 154 ILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 ++RD W L AN+ +S ELT RE E L I +G EIA L Sbjct: 396 VMRDASWFSQTLIEKLANVRNTRSAQAPAVTSAELTTREREVLGLIYQGLADKEIAAQLQ 455 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ NTV N++A++ K +R AI +A Sbjct: 456 LAPNTVRNHVATLYSKLDVHSRGEAIVWA 484 >gi|297157878|gb|ADI07590.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E LT I G T+ EIA L ++ +TV ++ I+ K + R A+ +A + Sbjct: 159 LTGREREVLTAIGRGWTNGEIAQRLVVAESTVKTHVGRILAKIGGRDRVQAVIFAYDTRL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|229492666|ref|ZP_04386467.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] gi|229320325|gb|EEN86145.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] Length = 285 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L RE+E L ++ G ++ EIA LG+ NTV +Y+ S MRK R A+ A Sbjct: 224 LRPREIEVLEHVARGSSNREIAEALGLLPNTVKSYLKSAMRKLHANNRIQAVLAA 278 >gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 220 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+ L +++GKT+ EI L +S TV N+++ I+ K R YAV ++ Sbjct: 153 DLSERELSVLAELAKGKTNAEIGRTLHLSEKTVRNHVSVILEKLHLSNRVELATYAVEHH 212 Query: 245 I 245 I Sbjct: 213 I 213 >gi|297202079|ref|ZP_06919476.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297148031|gb|EDY58315.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 280 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F+L+ RE E + I+ G T+ +IA IS TV N+I I K + +RS A A Sbjct: 212 FQLSAREAEIMDLIASGMTNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAA 266 >gi|305680557|ref|ZP_07403365.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|305660088|gb|EFM49587.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 281 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 219 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276 >gi|238025165|ref|YP_002909397.1| response regulator, NarL family protein [Burkholderia glumae BGR1] gi|237879830|gb|ACR32162.1| Response regulator, NarL-family protein [Burkholderia glumae BGR1] Length = 238 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 36/52 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE+E L +S+G T+ EI+ +L +SR TV +I +I +K A ++R+ A+ Sbjct: 177 LSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRTQAV 228 >gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603] gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603] Length = 207 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +VH K LT +E+ L I+ G + EIA +GI+ TV Y+ +I K Sbjct: 130 YKRKEVHADKVEGNNLTEKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 190 NSRSEAVAVSIERKLI 205 >gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE + L ++ +G+++ EIA L +S TV +++ S+ K + R+ A A+ Sbjct: 157 KRQQLTERERDVLEYLIKGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDRTEAAIEAI 216 Query: 242 RNNIV 246 R+ IV Sbjct: 217 RHGIV 221 >gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ NN+ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|62289334|ref|YP_221127.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699262|ref|YP_413836.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|189023586|ref|YP_001934354.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|237814824|ref|ZP_04593822.1| LuxR family DNA-binding response regulator [Brucella abortus str. 2308 A] gi|254696773|ref|ZP_05158601.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 2 str. 86/8/59] gi|254729682|ref|ZP_05188260.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 4 str. 292] gi|260545913|ref|ZP_05821654.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260757346|ref|ZP_05869694.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761170|ref|ZP_05873513.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|62195466|gb|AAX73766.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82615363|emb|CAJ10326.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189019158|gb|ACD71880.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|237789661|gb|EEP63871.1| LuxR family DNA-binding response regulator [Brucella abortus str. 2308 A] gi|260097320|gb|EEW81195.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260667664|gb|EEX54604.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671602|gb|EEX58423.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE + L ++EG ++ EIA LGIS TV + +I +K + +G YA+ Sbjct: 145 KSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAI 204 Query: 242 RNNI 245 N + Sbjct: 205 ENRL 208 >gi|318062308|ref|ZP_07981029.1| transcriptional regulator, LuxR family protein [Streptomyces sp. SA3_actG] Length = 266 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L ++E +T+ IA LGIS TV+ ++A + RK T+ R + A + Sbjct: 206 LTPREITVLALLAEARTASAIAQRLGISPRTVHRHLAHLYRKFGTRDRLATVLRARETGV 265 Query: 246 V 246 + Sbjct: 266 L 266 >gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE+E L+ + G+T +IA L +S TV NY+A+++ K + R AI A Sbjct: 138 DCPLTPREIEILSLAARGRTVSDIASELFLSAGTVRNYLAAVVTKLNARNRVHAIRIA 195 >gi|299069943|emb|CBJ41227.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CMR15] Length = 252 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE E I +GK++ EIA ++ S NTV +Y++SIM KT + R Sbjct: 183 LSEREREVALLIGQGKSNAEIAQLVCKSENTVKHYLSSIMDKTGCENR 230 >gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 243 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G L+ RE E L WI+ GK E+A IL IS TV N++ + R+ + + A+ Sbjct: 173 VSSGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232 Query: 238 AYAVR 242 A A+R Sbjct: 233 ARALR 237 >gi|302528147|ref|ZP_07280489.1| predicted protein [Streptomyces sp. AA4] gi|302437042|gb|EFL08858.1| predicted protein [Streptomyces sp. AA4] Length = 240 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L IS G T+ EIA +S TV +++ ++ RK + R+ A+A N Sbjct: 168 ELTLRETQVLGLISIGLTNSEIAEAQSVSAETVRSHVKNVYRKLGARNRAHAVALGHLEN 227 Query: 245 IV 246 ++ Sbjct: 228 LI 229 >gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] Length = 216 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 152 QLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 211 Query: 245 I 245 I Sbjct: 212 I 212 >gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L I +G+++ EIA L IS TV +I +++ K R+ A A++ Sbjct: 149 ELTARELDVLRLIVQGRSNREIAADLHISEATVKTHINNLLSKLGVSDRTQAATTALQRG 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 220 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ G T+ EIA L I+ TV ++ +I++K + R+ A A++ + Sbjct: 159 LTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAVLAIQKGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 361 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E + I+ G+ + +IA LG+S TV N+I +I K ++R+ AI A Sbjct: 297 LTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKLEVESRAQAIVLA 351 >gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 208 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 165 LAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +A +N K + G + + LT RE+E L I +G ++ EIA L +S TV NYI S Sbjct: 128 VAKTISNFIKEDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITS 187 Query: 224 IMRKTATKTRSGAIAYAVRN 243 ++ K + R+ + ++N Sbjct: 188 LLEKLELRDRTQLAIFYLKN 207 >gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 214 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++ L +++G T+ EIA L +SR TV ++ +I RK A +R+ A++ A Sbjct: 153 LSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 207 >gi|271969348|ref|YP_003343544.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512523|gb|ACZ90801.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 202 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ REVE L SEG EIA L +++ TV NY+ +I+ K + R A+ A Sbjct: 137 GRRNPLSPREVEVLRMASEGAEPAEIASRLHLTKGTVRNYLGAIVTKLDARNRLDAVRIA 196 >gi|226362289|ref|YP_002780067.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240774|dbj|BAH51122.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 75 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L ++ GK + IA LGIS +TV ++AS+++K R A A +R I Sbjct: 4 LNPRELEVLAHLTVGKRNKAIASELGISESTVKFHVASVLQKLDVTNRGEAGAIGIRAGI 63 >gi|218658799|ref|ZP_03514729.1| conjugal transfer transcriptional regulator protein [Rhizobium etli IE4771] Length = 108 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 26/36 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 L+ RE+ CL W ++GKT+ E A++ GI+ TV +Y+ Sbjct: 48 LSPREMTCLLWATKGKTAPETAMLTGINARTVQHYL 83 >gi|11467319|ref|NP_043176.1| putative OmpR transcriptional regulator [Cyanophora paradoxa] gi|1351750|sp|P48359|YCF29_CYAPA RecName: Full=Probable transcriptional regulator ycf29 gi|1016120|gb|AAA81207.1| putative OmpR transcriptional regulator [Cyanophora paradoxa] Length = 210 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE L + EG + +IA L IS V Y++ + KT T+ R+ + YA+ NN++ Sbjct: 150 TPREQSVLNLVVEGLLNKQIAANLNISIRIVEKYVSRLFIKTKTRNRAELVKYALENNLI 209 >gi|325520456|gb|EGC99559.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 510 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C] gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C] Length = 223 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L+ I++G ++ EIA L ++ TV ++ I+ K + R+ A +A Sbjct: 157 ELTERETEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETG 216 Query: 245 IV 246 +V Sbjct: 217 LV 218 >gi|239831204|ref|ZP_04679533.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823471|gb|EEQ95039.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE + L ++EG ++ EIA+ LGIS TV + +I +K + +G YA+ Sbjct: 145 KSEGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTRYAI 204 Query: 242 RNNI 245 N + Sbjct: 205 ENRL 208 >gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] Length = 202 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 12/124 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180 G+D R LT AR + M+ +L+D EI L AA+ N+F + + Sbjct: 69 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRRAAHGENVFSNEVAQY 128 Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 129 LSSRHEEINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 188 Query: 233 RSGA 236 R A Sbjct: 189 RVAA 192 >gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 255 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 12/93 (12%) Query: 162 IGLLAAYQANMFKS--YDVHWGK----------DFELTGREVECLTWISEGKTSDEIAVI 209 I + A++++ + KS Y+ G+ D LT RE+E L + +G S EIA Sbjct: 157 IDVDASHESEIIKSHLYNFKTGEQIFIDLSDTLDEPLTNRELEVLRLMKQGLLSKEIANT 216 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L +S NTVN + +I++K A+ +A R Sbjct: 217 LKVSINTVNTHRQNILQKLKANNSIEAVNFAQR 249 >gi|194289374|ref|YP_002005281.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223209|emb|CAQ69214.1| putative TRANSCRIPTIONAL REGULATOR; LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 225 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + EGKTS +I +L IS TV+ Y A +M+K T Sbjct: 167 ELTAREREIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAST 214 >gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E + L I+EG +S EIA G+S NTV+ + +IMRK ++ + YA++ I Sbjct: 153 LTPKEKQILQLIAEGFSSKEIAKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRYAIKEGI 212 >gi|146297802|ref|YP_001192393.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152220|gb|ABQ03074.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 221 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I + KT+ EIA L +S TV + +++ KT ++ +G + YA++N I Sbjct: 157 LSPREIEILQLICQQKTTSEIAEHLFLSPRTVEGHRNNLLLKTESRNIAGLVVYAIQNEI 216 >gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida] Length = 238 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LRD E G+L +A + S VH LT RE E L W + GKT+ EI++IL + Sbjct: 154 LLRDYAME-GML---KARIECSTPVH------LTSREKEVLQWSAAGKTTWEISMILSCT 203 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ + +I RK +R A+ A++ + Sbjct: 204 TSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236 >gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 187 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 246 Query: 246 V 246 V Sbjct: 247 V 247 >gi|256822565|ref|YP_003146528.1| two component LuxR family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796104|gb|ACV26760.1| two component transcriptional regulator, LuxR family [Kangiella koreensis DSM 16069] Length = 214 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +IS+G ++ IA L I+ +TV ++ +++K K+R A +AV N + Sbjct: 154 LTNRETQILRYISQGDSNKVIARKLEIAESTVKVHVKHLLKKINLKSRIEAALFAVENKL 213 >gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 221 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG ++DEIA L +S +TV +++ M K A + R+ + A + + Sbjct: 155 LTDREREVLVTVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLVVAAYESGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|261410000|ref|YP_003246241.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286463|gb|ACX68434.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 201 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L EG T+ +I+ L ++R TV NY++S ++K +R A+ A Sbjct: 141 LSEREIEMLRLTKEGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIA 195 >gi|114765358|ref|ZP_01444475.1| autoinducer-binding transcriptional regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542338|gb|EAU45367.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 255 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT +IA I+G+++ T+ ++ +T + A+A A N Sbjct: 190 LTKRQREALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKAAFQN 248 >gi|289644902|ref|ZP_06476947.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505287|gb|EFD26341.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 222 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L I+EG T+ +IA + +S TV NY+++I+ K +R+ A YA + Sbjct: 152 LSEREREILLLIAEGLTNRQIASRIHLSDKTVKNYVSAILDKLELTSRTQAAVYATK 208 >gi|267027596|gb|ACY78510.1| LuxR type regulator [Corynebacterium stationis] Length = 279 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273 Query: 242 R 242 R Sbjct: 274 R 274 >gi|290956780|ref|YP_003487962.1| luxR-type transcriptional regulator [Streptomyces scabiei 87.22] gi|260646306|emb|CBG69401.1| putative luxR-type transcriptional regulator [Streptomyces scabiei 87.22] Length = 293 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E LT ++ G T+ E+A L IS TV + + S MRK + R +A A Sbjct: 232 LTEREREILTKVATGATNREVAAALSISAETVKSSLTSSMRKFGVRNRVALVAAA 286 >gi|225022291|ref|ZP_03711483.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii ATCC 33806] gi|224944952|gb|EEG26161.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii ATCC 33806] Length = 282 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 220 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 277 >gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 214 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 207 Query: 241 VRNNI 245 VR+ + Sbjct: 208 VRHGL 212 >gi|163755753|ref|ZP_02162871.1| phosphoglyceromutase [Kordia algicida OT-1] gi|161324274|gb|EDP95605.1| phosphoglyceromutase [Kordia algicida OT-1] Length = 225 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I KT+ EI L I+ TV + +++ KT + +G + YA++NN Sbjct: 157 LTEREIEVLKLICFQKTAKEIGEQLFITPRTVEGHKSNLFIKTEARNIAGLVIYAIQNNY 216 Query: 246 V 246 + Sbjct: 217 I 217 >gi|113867349|ref|YP_725838.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113526125|emb|CAJ92470.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 181 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + EGKTS +I +L IS TV+ Y A +M+K T Sbjct: 123 ELTAREREIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAST 170 >gi|91789053|ref|YP_550005.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91698278|gb|ABE45107.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 895 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L + EG + EIA L S TV++++A++ K +R+ A+A A+ Sbjct: 824 QLTAREIEVLLLLCEGLKNSEIAERLCRSVRTVDHHLAAVFTKLGVASRTEAVAAALHAG 883 Query: 245 I 245 I Sbjct: 884 I 884 >gi|330821495|ref|YP_004350357.1| Response regulator, NarL-family protein [Burkholderia gladioli BSR3] gi|327373490|gb|AEA64845.1| Response regulator, NarL-family protein [Burkholderia gladioli BSR3] Length = 236 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 36/52 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE+E L +S+G T+ EI+ +L +SR TV +I +I +K A ++R+ A+ Sbjct: 175 LSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRTQAV 226 >gi|302528200|ref|ZP_07280542.1| predicted protein [Streptomyces sp. AA4] gi|302437095|gb|EFL08911.1| predicted protein [Streptomyces sp. AA4] Length = 1174 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 H G L+ RE + + +G+T+ EIA +L +SR TV ++A+++RK ++R Sbjct: 1114 HRGAGSGLSPREEQVEQLVLDGRTNQEIADVLFLSRRTVEEHVANVLRKRGVRSR 1168 >gi|194295673|gb|ACF40862.1| response DNA binding regulatory protein [Streptomyces albus] Length = 212 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE + LT I++G T D++A L ISR+TV+ Y+ + RK Sbjct: 148 LSARERQVLTGIAKGLTHDQVAYRLQISRHTVDTYVKRVRRK 189 >gi|333027222|ref|ZP_08455286.1| putative response regulator [Streptomyces sp. Tu6071] gi|332747074|gb|EGJ77515.1| putative response regulator [Streptomyces sp. Tu6071] Length = 247 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +G L + + + G L RE + L ++EG + EIA L S TV N + Sbjct: 163 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 222 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + + + R+ A+AYA+R + Sbjct: 223 HGLTTRLHLRNRAHAVAYALRQGYI 247 >gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 205 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE+E L ++S G + +IA L IS +TV ++ I+ K + R+ A Y V Sbjct: 143 ELTTREMEVLKFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRTQAALYGV 199 >gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 202 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG + IA LGIS +T ++ +I+ K ++R+ AI A R + Sbjct: 140 LTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNAILGKLGVESRAEAIVRAARLGL 199 Query: 246 V 246 V Sbjct: 200 V 200 >gi|257064489|ref|YP_003144161.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792142|gb|ACV22812.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 258 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L I++G+++ EIA I+GIS TV +++ I K +R+ IA Sbjct: 199 LTPREQEVLVHITDGRSNAEIARIMGISEATVKKHVSHIFDKYNVFSRTELIA 251 >gi|126739109|ref|ZP_01754803.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126719726|gb|EBA16434.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 214 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ E+A+ L IS TV + +I RK + +G YA+ + + Sbjct: 147 LTGREQTILLELAQGKSNKEVALHLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 241 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 172 MFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 M D KD L T RE L ++EG + EIA L S V Y++ + KT Sbjct: 163 MLAHGDGSSSKDVALHNFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKT 222 Query: 229 ATKTRSGAIAYAVRNNIV 246 T +R+ + YA+ N +V Sbjct: 223 GTSSRTELVRYALENQLV 240 >gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W + GKTS E + ILG++ TV + T + AI AVR + Sbjct: 178 LTEREKEVLLWAAAGKTSSETSQILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRM 237 Query: 246 V 246 + Sbjct: 238 I 238 >gi|300780522|ref|ZP_07090378.1| LuxR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300534632|gb|EFK55691.1| LuxR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 280 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 218 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 275 >gi|257791584|ref|YP_003182190.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475481|gb|ACV55801.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 487 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 K+F L+GRE E L I+ G T++ +A L IS TVN ++ I K RS + Y Sbjct: 421 AKEFSLSGREAEILVLIARGYTTNNMAEKLVISPYTVNTHVRHIYEKMQIHKRSELLNY 479 >gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 216 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L ++EG+++ EIA L +S TV N+ S+M K + YA+R Sbjct: 149 MELTPREWEILQLVAEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIR 207 >gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 238 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 174 KSYDVHW-GKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ D+H G +L T RE+E L +++GK EIA+++ IS +TV ++ S K Sbjct: 161 RACDIHGEGHTIDLSTITRREIEALALVAQGKKPGEIAMLMRISNDTVKAHLDSARDKLQ 220 Query: 230 TKTRSGAIAYAVRNNIV 246 R A A A+R ++ Sbjct: 221 ALNRVHAAAKALRAGLI 237 >gi|134099595|ref|YP_001105256.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009580|ref|ZP_06567553.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912218|emb|CAM02331.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 285 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 R RL E+ K++D + G L+ RE E L ++ G T+D +A LG+ Sbjct: 199 RGRLLEV-------CRRVKAHDGRYRHGTRPALSPRETEVLALVATGCTNDAVARRLGLL 251 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 NTV +Y+ S M+K R A+ A + ++ Sbjct: 252 PNTVKSYLKSAMKKLDATNRVQAVNRARQAGLI 284 >gi|227547991|ref|ZP_03978040.1| regulatory family protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079936|gb|EEI17899.1| regulatory family protein [Corynebacterium lipophiloflavum DSM 44291] Length = 279 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 217 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 274 >gi|254476478|ref|ZP_05089864.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214030721|gb|EEB71556.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 252 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IAV++G++ TV ++ + +T + A+ A +N Sbjct: 186 LTRRQREALQWVGDGKTTQDIAVLMGLTTATVEKHLRLAREALSVETTAHAVLKAALHN 244 >gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++G+++ EIA L + TV ++ +I+ K R+ AI AV+ Sbjct: 136 QLTKRELEVLAQVAKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRG 195 Query: 245 IV 246 ++ Sbjct: 196 LI 197 >gi|111019574|ref|YP_702546.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819104|gb|ABG94388.1| transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 412 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L RE+E L ++ GK + IA LGIS +TV ++A +++K +R A A A+ Sbjct: 343 DLNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAG 402 Query: 245 I 245 I Sbjct: 403 I 403 >gi|317482777|ref|ZP_07941789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] gi|316915812|gb|EFV37222.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] Length = 158 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ RE++ L ++ + EIA LGIS NTV +YI + +K TK RS Sbjct: 97 QLSPRELQVLRLYTQNNNTSEIASQLGISSNTVFSYIHRVSKKIGTKNRS 146 >gi|239980315|ref|ZP_04702839.1| LuxR response regulator receiver [Streptomyces albus J1074] gi|291452180|ref|ZP_06591570.1| regulator [Streptomyces albus J1074] gi|291355129|gb|EFE82031.1| regulator [Streptomyces albus J1074] Length = 203 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D LT RE E L +++G EIA L +S TV NY+ +++ K + R AI A Sbjct: 137 GADSPLTERETEVLRLVAQGWEPSEIAKELHLSAGTVRNYLTTVVSKLNARNRVDAIRIA 196 >gi|239813574|ref|YP_002942484.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239800151|gb|ACS17218.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 227 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT R+VE L +S+GK + I LGIS TV ++A+I R + R+ A+ A Sbjct: 164 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 218 >gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ L I EG ++ IA L I TV +++ +I+ K R+ A+ +R Sbjct: 145 DDHLTERELDVLRLIGEGNSNKLIADQLSIGEATVKSHVTNILSKLGASDRAHAVTIGLR 204 Query: 243 NNIV 246 I+ Sbjct: 205 RGII 208 >gi|567886|gb|AAD15247.1| regulatory protein [Streptomyces peucetius] Length = 202 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 180 WGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 WG LT RE+E L + G +EIAV L +S TV NY+A+ +RK + R A+ Sbjct: 135 WGNTGCPLTEREMEILQLAAAGDDINEIAVKLSLSPGTVRNYLATTVRKMDARNRLDAVR 194 Query: 239 YA 240 A Sbjct: 195 IA 196 >gi|326444132|ref|ZP_08218866.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 201 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++ + + L+ RE+ L +EG++ IA L ++ TV NY+A+ +RKT + R Sbjct: 130 AFGLLQASEVPLSARELRVLALAAEGESVSSIANALHLASGTVRNYLAAAIRKTGARNRL 189 Query: 235 GAI 237 AI Sbjct: 190 DAI 192 >gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 201 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L RE + L I++G + EIA L +S T+ NY++SI+ K A + R+ + Y Sbjct: 143 DLNEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVVY 197 >gi|294815787|ref|ZP_06774430.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294328386|gb|EFG10029.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++ + + L+ RE+ L +EG++ IA L ++ TV NY+A+ +RKT + R Sbjct: 153 AFGLLQASEVPLSARELRVLALAAEGESVSSIANALHLASGTVRNYLAAAIRKTGARNRL 212 Query: 235 GAI 237 AI Sbjct: 213 DAI 215 >gi|238025347|ref|YP_002909579.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237880012|gb|ACR32344.1| Two component transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 214 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+GRE++ I+ G T EIA LG+S TV+ Y I+ K + + YA+R Sbjct: 145 DQRLSGREIDVFRRIAAGCTVCEIAHALGLSVKTVSTYKTRILEKMKLPHEAALVRYAIR 204 Query: 243 NNI 245 + + Sbjct: 205 HKL 207 >gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +AA N+ + DF LT RE E L ++E ++ EIA LGIS TV+N+ ++ Sbjct: 129 VAALLRNVVANPSASNTADF-LTDREREILQLVAESHSTKEIAAKLGISIKTVDNHRTNL 187 Query: 225 MRK 227 MRK Sbjct: 188 MRK 190 >gi|86608341|ref|YP_477103.1| LuxR family transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556883|gb|ABD01840.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 87 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 181 GKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 G D+ L+ RE++ + I+ G T+ +IA L IS+ TV+N+I++I+ KT T R Sbjct: 2 GTDYHSADLLSERELQVIELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTANRVAL 61 Query: 237 IAYAVR 242 + +A++ Sbjct: 62 VRWALQ 67 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074670|gb|ADJ64069.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ E L I+EG + EIA L +S T+ + A +M + + G + YA+R I Sbjct: 152 LTPRQREILQLIAEGNNTKEIAYQLNVSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGI 211 Query: 246 V 246 Sbjct: 212 A 212 >gi|238025036|ref|YP_002909268.1| FOG PAS/PAC domain-containing protein [Burkholderia glumae BGR1] gi|237879701|gb|ACR32033.1| FOG: PAS/PAC domain protein [Burkholderia glumae BGR1] Length = 529 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%) Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193 D++ + M L ++D W L AN+ ++ G +LT RE + Sbjct: 387 LDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANVRRAKAPDAGAQLADLTARERDV 446 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G EIA LG++ NTV N++A+I K +R AI +A IV Sbjct: 447 FDLLCHGLPDKEIANRLGLAPNTVRNHVATIYTKLDVHSRGEAIVWARERGIV 499 >gi|227501523|ref|ZP_03931572.1| possible response regulator [Corynebacterium accolens ATCC 49725] gi|227077548|gb|EEI15511.1| possible response regulator [Corynebacterium accolens ATCC 49725] Length = 219 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E LT I+ G T+ EIA + I+ TV +++++M K A + R + A + I Sbjct: 159 VTRREMEVLTLIARGATNSEIAGHMSIADTTVKTHVSALMSKLAARDRVALVLLAHKAGI 218 >gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 214 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++GK++ +IA L I TV ++ +I+ K + R+ A YA +N Sbjct: 152 DLTDREMEVLRLVAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNG 211 Query: 245 I 245 + Sbjct: 212 L 212 >gi|306835684|ref|ZP_07468690.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304568402|gb|EFM43961.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 219 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E LT I+ G T+ EIA + I+ TV +++++M K A + R + A + I Sbjct: 159 VTRREMEVLTLIARGATNGEIAGHMSIADTTVKTHVSALMSKLAARDRVALVLLAHKAGI 218 >gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 225 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + EG + EIA L +S+ TV N+ A+IMRK G + YA+ + Sbjct: 158 LTDRERQLLRLVVEGLPNREIADKLCLSQKTVENHRANIMRKLGRHDVIGLVKYAIATGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|297539450|ref|YP_003675219.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258797|gb|ADI30642.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 275 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ RE E + W+ GKT+ EI +IL IS TV ++ I +K R+ A Sbjct: 215 LSDRESEIMLWVKMGKTNHEIGMILNISAFTVKKHLQRIFKKLDVLNRAQA 265 >gi|171058278|ref|YP_001790627.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775723|gb|ACB33862.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 209 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE++ LT I+ GK +IA L +S TV+ Y A ++ K S YA+RN Sbjct: 148 KLSDRELQTLTMIASGKRLSDIAEELTLSPKTVSVYRARVLEKLGLANNSELTVYAIRNG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|107022537|ref|YP_620864.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689486|ref|YP_835109.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254245618|ref|ZP_04938939.1| PAS [Burkholderia cenocepacia PC184] gi|105892726|gb|ABF75891.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116647575|gb|ABK08216.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|124870394|gb|EAY62110.1| PAS [Burkholderia cenocepacia PC184] Length = 228 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 170 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 215 >gi|318059884|ref|ZP_07978607.1| response regulator [Streptomyces sp. SA3_actG] gi|318081229|ref|ZP_07988561.1| response regulator [Streptomyces sp. SA3_actF] Length = 199 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +G L + + + G L RE + L ++EG + EIA L S TV N + Sbjct: 115 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 174 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + + + R+ A+AYA+R + Sbjct: 175 HGLTTRLHLRNRAHAVAYALRQGYI 199 >gi|319785858|ref|YP_004145333.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464370|gb|ADV26102.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 221 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT ++ L + EG+ + +IA LG+S T+ ++ +++RK R+ A+ A R Sbjct: 148 ELTPQQFRVLQMLGEGRLNKQIAYDLGVSEATIKAHVTAVLRKLGVGNRTQAVLMAGR 205 >gi|291455100|ref|ZP_06594490.1| response regulator [Streptomyces albus J1074] gi|291358049|gb|EFE84951.1| response regulator [Streptomyces albus J1074] Length = 222 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G LT REV+ + I+EG + EIA L S TV N I + + + R+ A+A Sbjct: 155 QGGPSLGLTPREVDVVRLIAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVA 214 Query: 239 YAVRNNIV 246 +A+R + Sbjct: 215 FALREGYI 222 >gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] Length = 229 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L+ +++G ++ EIA L +SR TV ++I I RK + R+ A++ A Sbjct: 169 LTQREQEILSLVAQGLSNREIAEQLCVSRYTVESHIKHIYRKLSVSKRTKAVSTA 223 >gi|255264294|ref|ZP_05343636.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62] gi|255106629|gb|EET49303.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62] Length = 214 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L +++GK++ E+A+ L IS TV + +I RK T +G YA+ N + Sbjct: 147 LTNREQSILLQLAQGKSNKEVAIDLEISVRTVETHRKNIKRKLGISTTAGLTRYAMENGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE ++ G+++ EI L +S NTV +++ ++++K + R A+ +A N + Sbjct: 153 LTPREVEIFGLLARGRSNSEICAELVLSENTVKSHVRAVLQKLDLRDRVHAVIHAYENGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 171 NMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 M D KD L T RE L ++EG + EIA L S V Y++ + K Sbjct: 154 TMLAHGDGSSSKDVALHNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIK 213 Query: 228 TATKTRSGAIAYAVRNNIV 246 T T +R+ + YA+ N +V Sbjct: 214 TGTSSRTELVRYALENQLV 232 >gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 218 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%) Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTS 203 R++L D+LW +I A + F +H D +LT RE ++ +S G + Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTDGDIEPIKLTKREKAIISLMSNGSKN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EIA L IS +TV ++ S RKT + R +++A +N Sbjct: 173 KEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|254718531|ref|ZP_05180342.1| two component transcriptional regulator, LuxR family protein [Brucella sp. 83/13] gi|265983502|ref|ZP_06096237.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306838339|ref|ZP_07471185.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653] gi|264662094|gb|EEZ32355.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306406630|gb|EFM62863.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653] Length = 213 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++EG ++ EIA LGIS TV + +I +K + +G YA+ N + Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208 >gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++ G T+ EIA L + TV ++A ++ K + R+ A+ +A + Sbjct: 152 DLTPRELEVLRFLARGLTNAEIAGQLFVGEATVKTHVARVLMKLHLRDRAQAVVFAYESG 211 Query: 245 IV 246 +V Sbjct: 212 VV 213 >gi|229822369|ref|YP_002883895.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568282|gb|ACQ82133.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 221 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + +S G ++ EIA L + +TV ++++ IM KTAT+ R + +A + + Sbjct: 155 LSPRELEIVELLSRGSSNAEIAAALVLEPSTVKSHLSRIMTKTATRDRVQLVVWAFTHGV 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68] gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus suis ST3] gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus suis ST3] Length = 200 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT E + L ++EG ++ EIA L +S TV NY+ SI+ K + R+ A+ A Sbjct: 139 LTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVRIA 193 >gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E + W++EG ++++IA L +S TV ++ M K + R+ + A ++ + Sbjct: 159 LTGREREVMAWVAEGHSNEKIAEKLFVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|4217959|gb|AAD12186.1| putative DNA binding protein TutB1 [Thauera aromatica] Length = 227 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L + G +S EIA +LGIS TV + IM K ++ I +A+R++ Sbjct: 148 LSQREMEILDKVVCGNSSKEIAKLLGISHKTVEAHRGRIMSKLGLRSTGDLIHFAMRSS 206 >gi|254254914|ref|ZP_04948231.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158] gi|124899559|gb|EAY71402.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158] Length = 510 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 211 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L S+G +S E+A L IS TV ++ASI K + ++ A+ A++ + Sbjct: 144 LSAREREVLVLASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGV 203 Query: 246 V 246 V Sbjct: 204 V 204 >gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+ G ++ EIAV L ++ TV ++ I+ K + R+ A +A + Sbjct: 154 DLTERETEVLALIARGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|237805558|ref|ZP_04592262.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026665|gb|EGI06720.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 74 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 10 QLTIKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 69 Query: 245 IV 246 ++ Sbjct: 70 VI 71 >gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 237 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L W + GKTS E + I+ I+ TVN +IA+ M+K ++ A A Sbjct: 176 LTMREKDVLRWTAAGKTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAA 231 >gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4] gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4] Length = 295 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE + L ++EG + IA +L +S TV ++ SI+RK + + R+ A+ A R+ Sbjct: 210 MPLSRREYQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRS 269 Query: 244 NIV 246 I+ Sbjct: 270 GIL 272 >gi|229824282|ref|ZP_04450351.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271] gi|229786255|gb|EEP22369.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271] Length = 199 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E + + + EG ++ E+A L +S TV NY++++++K + K R+ AI N Sbjct: 139 LTPQERQLMAGVREGLSNKELAQELHLSEGTVRNYMSTVLQKLSAKNRADAIRICQENG 197 >gi|161524958|ref|YP_001579970.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221197727|ref|ZP_03570773.1| sensory box transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221204715|ref|ZP_03577732.1| sensory box transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221214910|ref|ZP_03587878.1| sensory box transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|160342387|gb|ABX15473.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|221165137|gb|EED97615.1| sensory box transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|221175572|gb|EEE08002.1| sensory box transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221181659|gb|EEE14060.1| sensory box transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 228 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 170 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 215 >gi|27367717|ref|NP_763244.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] gi|27359289|gb|AAO08234.1|AE016812_216 DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] Length = 374 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E E + + G DEIAV+ + NT+ I + + KTAT+ ++ +A +R+ Sbjct: 311 FSLTLAEAEVTSLLCSGSLVDEIAVLRAATSNTIRQQIKACLAKTATRNQAELVAKVIRS 370 >gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida] Length = 238 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +LRD E G+L +A + S VH LT RE E L W + GKT+ EI++IL + Sbjct: 154 LLRDYAME-GML---KARIECSTPVH------LTSREKEVLQWSAAGKTTWEISMILSCT 203 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ + +I RK +R A+ A++ + Sbjct: 204 TSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236 >gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 219 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D H L+ RE E ++ G T+ EIA L IS TV + ASIM K + +R Sbjct: 148 DAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPEL 207 Query: 237 IAYAVRNNIV 246 + YAV ++++ Sbjct: 208 VRYAVHHHLI 217 >gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 230 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E LT I+EG ++ EIA +S TV ++ I+ K + R + YA Sbjct: 162 ELTPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYAYETG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|17987865|ref|NP_540499.1| transcriptional regulatory protein DEGU [Brucella melitensis bv. 1 str. 16M] gi|23501247|ref|NP_697374.1| LuxR family DNA-binding response regulator [Brucella suis 1330] gi|148559651|ref|YP_001258379.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161618323|ref|YP_001592210.1| two component LuxR family transcriptional regulator [Brucella canis ATCC 23365] gi|163842630|ref|YP_001627034.1| two component LuxR family transcriptional regulator [Brucella suis ATCC 23445] gi|225626863|ref|ZP_03784902.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo] gi|225851885|ref|YP_002732118.1| LuxR family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|254701158|ref|ZP_05162986.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 5 str. 513] gi|254703704|ref|ZP_05165532.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 3 str. 686] gi|254707920|ref|ZP_05169748.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M163/99/10] gi|254709500|ref|ZP_05171311.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis B2/94] gi|254713082|ref|ZP_05174893.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M644/93/1] gi|254716565|ref|ZP_05178376.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M13/05/1] gi|256030994|ref|ZP_05444608.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M292/94/1] gi|256044064|ref|ZP_05446975.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060484|ref|ZP_05450655.1| two component transcriptional regulator, LuxR family protein [Brucella neotomae 5K33] gi|256112861|ref|ZP_05453782.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 3 str. Ether] gi|256159043|ref|ZP_05456876.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M490/95/1] gi|256254397|ref|ZP_05459933.1| two component transcriptional regulator, LuxR family protein [Brucella ceti B1/94] gi|256264603|ref|ZP_05467135.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256368799|ref|YP_003106305.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260168126|ref|ZP_05754937.1| DNA-binding response regulator, LuxR family protein [Brucella sp. F5/99] gi|260563426|ref|ZP_05833912.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567044|ref|ZP_05837514.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|261218363|ref|ZP_05932644.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261221562|ref|ZP_05935843.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94] gi|261315409|ref|ZP_05954606.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317025|ref|ZP_05956222.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261320788|ref|ZP_05959985.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324478|ref|ZP_05963675.1| two component LuxR family transcriptional regulator [Brucella neotomae 5K33] gi|261751695|ref|ZP_05995404.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754348|ref|ZP_05998057.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757583|ref|ZP_06001292.1| bacterial regulatory protein [Brucella sp. F5/99] gi|265988062|ref|ZP_06100619.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990479|ref|ZP_06103036.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994307|ref|ZP_06106864.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997525|ref|ZP_06110082.1| two component LuxR family transcriptional regulator [Brucella ceti M490/95/1] gi|294851727|ref|ZP_06792400.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|306842393|ref|ZP_07475048.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2] gi|306844978|ref|ZP_07477559.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1] gi|17983597|gb|AAL52763.1| two-component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23347130|gb|AAN29289.1| DNA-binding response regulator, LuxR family [Brucella suis 1330] gi|148370908|gb|ABQ60887.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC 25840] gi|161335134|gb|ABX61439.1| two component transcriptional regulator, LuxR family [Brucella canis ATCC 23365] gi|163673353|gb|ABY37464.1| two component transcriptional regulator, LuxR family [Brucella suis ATCC 23445] gi|225618520|gb|EEH15563.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo] gi|225640250|gb|ACO00164.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis ATCC 23457] gi|255998957|gb|ACU47356.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260153442|gb|EEW88534.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156562|gb|EEW91642.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260920146|gb|EEX86799.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94] gi|260923452|gb|EEX90020.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293478|gb|EEX96974.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296248|gb|EEX99744.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300458|gb|EEY03955.1| two component LuxR family transcriptional regulator [Brucella neotomae 5K33] gi|261304435|gb|EEY07932.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737567|gb|EEY25563.1| bacterial regulatory protein [Brucella sp. F5/99] gi|261741448|gb|EEY29374.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261744101|gb|EEY32027.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262551993|gb|EEZ07983.1| two component LuxR family transcriptional regulator [Brucella ceti M490/95/1] gi|262765420|gb|EEZ11209.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001263|gb|EEZ13838.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094966|gb|EEZ18674.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264660259|gb|EEZ30520.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294820316|gb|EFG37315.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|306274610|gb|EFM56399.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1] gi|306287481|gb|EFM58951.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2] gi|326408384|gb|ADZ65449.1| LuxR family two component transcriptional regulator [Brucella melitensis M28] gi|326538098|gb|ADZ86313.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis M5-90] Length = 213 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++EG ++ EIA LGIS TV + +I +K + +G YA+ N + Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208 >gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] Length = 215 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ L + GK++ +IA L IS TV +++ RK + K R A A+A + Sbjct: 152 NVDLTMREIQVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQ 211 Query: 243 NNI 245 N I Sbjct: 212 NLI 214 >gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 215 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I+EG ++ EIA L I+ TV +++ I+ K + R+ A +A++ Sbjct: 154 LTPREQEVLRLITEGMSNKEIAANLVIAEKTVKTHVSGILNKLDLQDRTQAAIHAMKQG 212 >gi|317488004|ref|ZP_07946586.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316912906|gb|EFV34433.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 487 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 K+F L+GRE E L I+ G T++ +A L IS TVN ++ I K RS + Y Sbjct: 421 AKEFSLSGREAEILVLIARGYTTNNMAEKLVISPYTVNTHVRHIYEKMQIHKRSELLNY 479 >gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E LT I++G ++ EIA L ++ TV +++ I+ K + R+ A +A Sbjct: 159 DLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYETG 218 Query: 245 IV 246 +V Sbjct: 219 LV 220 >gi|302518950|ref|ZP_07271292.1| response regulator [Streptomyces sp. SPB78] gi|302427845|gb|EFK99660.1| response regulator [Streptomyces sp. SPB78] Length = 217 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +G L + + + G L RE + L ++EG + EIA L S TV N + Sbjct: 133 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 192 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + + + R+ A+AYA+R + Sbjct: 193 HGLTTRLHLRNRAHAVAYALRQGYI 217 >gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C] gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C] Length = 223 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|255535277|ref|YP_003095648.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] gi|255341473|gb|ACU07586.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] Length = 226 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+E L I++ ++++I L IS TV + +I KT TK+ G I YA+ I Sbjct: 162 LSGRELEVLKLIAKEFSNEQIGEQLFISERTVEAHRRNIFMKTKTKSIVGLIKYAITEGI 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|302875621|ref|YP_003844254.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307690153|ref|ZP_07632599.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302578478|gb|ADL52490.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 206 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++ T RE + + +SEG ++ EI+ L IS T+ NYI +I+ KTA + R+ ++ Sbjct: 145 YDFTEREKDIIIAVSEGLSNKEISKKLFISEGTIRNYITAILDKTALEHRTAIAVNYLKG 204 Query: 244 NI 245 N+ Sbjct: 205 NL 206 >gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] Length = 216 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+E L I EGKT+ EIA L IS TV ++++++ K + R Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDR 204 >gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307] gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp. RCC307] Length = 235 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +SEG + EIA L IS+ TV ++++++ K + R+ A A+R Sbjct: 171 QLSSREQEVLQALSEGYCNREIAQRLFISQETVKTHVSTVISKLGVRDRTQAAVMALRMG 230 Query: 245 IV 246 ++ Sbjct: 231 LL 232 >gi|148555161|ref|YP_001262743.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500351|gb|ABQ68605.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 899 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +T RE++ L +++G +S E+A LG++ +T+ + +I RK TRS AI+ A R Sbjct: 836 DIIVTPREIDVLRGLADGLSSKEMARSLGVAESTIKTHRINIYRKLNVATRSRAIS-AAR 894 Query: 243 N 243 N Sbjct: 895 N 895 >gi|332521658|ref|ZP_08398111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] gi|332042747|gb|EGI78947.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] Length = 208 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 23/168 (13%) Query: 66 WDLFQEQKLDSIVSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 +D + K+D I+ D P L AL + K Y ++ +F T PE + Sbjct: 40 FDFLKHNKVDVILCEIDLP-KLNGITALRKIRKEY------PDVRVIIFSTQPEEVYALN 92 Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 + Y S T D+ I+ I++ + L A + +S G Sbjct: 93 AIKLGAAGYLSKTTDIITIKDA----------IIKAYMGNTYLSEAMTKRLMQSKKSSEG 142 Query: 182 KDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + F +L+ RE+E L ++ GK + EIA L I+ TV+ Y A +M+K Sbjct: 143 QSFFKKLSNREIEVLKLLTSGKRNKEIAQELDINEKTVSTYRARLMKK 190 >gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L I+ G+++ EIA +L + +TV ++ ++ K +R A+ YA Sbjct: 152 ELTPRERDVLLGIAAGRSNAEIAALLQLEESTVKGHVGRMLAKLGLHSRVQAVIYAYETG 211 Query: 245 IV 246 +V Sbjct: 212 LV 213 >gi|227502153|ref|ZP_03932202.1| regulatory family protein [Corynebacterium accolens ATCC 49725] gi|306836811|ref|ZP_07469769.1| LuxR family bacterial regulatory protein [Corynebacterium accolens ATCC 49726] gi|227077137|gb|EEI15100.1| regulatory family protein [Corynebacterium accolens ATCC 49725] gi|304567272|gb|EFM42879.1| LuxR family bacterial regulatory protein [Corynebacterium accolens ATCC 49726] Length = 279 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +L+ RE++ L+ ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273 Query: 242 R 242 R Sbjct: 274 R 274 >gi|198276688|ref|ZP_03209219.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135] gi|198270213|gb|EDY94483.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135] Length = 195 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L +++G + EIA L IS TV ++ +I K K+ SG YAV Sbjct: 127 EHELSAREIEVLRLVTKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLAIYAVM 186 Query: 243 NNIV 246 + + Sbjct: 187 HGYI 190 >gi|86740241|ref|YP_480641.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567103|gb|ABD10912.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 357 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L +S G ++ E A L +S TV Y+ SIMRK + R+ A+ A Sbjct: 294 LTLTPRELEVLAQVSLGLSNVETARRLTVSPETVKAYLRSIMRKLGVRNRTAAVHAA 350 >gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ TV ++ I+ K + + R+ A +A + Sbjct: 158 ELTERETEVLALIAQGMSNAEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESG 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|119358450|ref|YP_913094.1| two component LuxR family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119355799|gb|ABL66670.1| two component transcriptional regulator, LuxR family [Chlorobium phaeobacteroides DSM 266] Length = 203 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE L + G TS +IA L IS TV + IM K +T +G YA + Sbjct: 142 QLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGYAREHG 201 Query: 245 IV 246 ++ Sbjct: 202 LI 203 >gi|333025578|ref|ZP_08453642.1| putative two-component system response regulator TcsR2 [Streptomyces sp. Tu6071] gi|332745430|gb|EGJ75871.1| putative two-component system response regulator TcsR2 [Streptomyces sp. Tu6071] Length = 198 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D L+ RE E L + ++G EIA G+S TV NY++S + K + R Sbjct: 127 AADAIAAGDSPLSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRH 186 Query: 235 GAI 237 A+ Sbjct: 187 AAV 189 >gi|302557670|ref|ZP_07310012.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|302475288|gb|EFL38381.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] Length = 222 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + EL+GR +E + I+ G+T+ EIA L IS +TV ++++ I K + R+ +A Sbjct: 153 RSSELSGRALEVVQAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVRNRTEIAVWAW 212 Query: 242 RNNIV 246 N +V Sbjct: 213 ENRVV 217 >gi|229821847|ref|YP_002883373.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567760|gb|ACQ81611.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 872 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ E L ++ G TS EIA L +SR TV+N++A ++ +R A+A Sbjct: 800 LTPRQHEILGLVARGLTSPEIADCLYLSRRTVDNHVADVLAALGVPSRRDAVA 852 >gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T++EIA IL IS TV+ + +++M+K ++ YA++ + Sbjct: 150 LTEREREILILLAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRGL 209 Query: 246 V 246 + Sbjct: 210 I 210 >gi|260584047|ref|ZP_05851795.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] gi|260158673|gb|EEW93741.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] Length = 211 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L I++GK++ EIA I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 150 TSREKEVLLLIAQGKSNQEIADECFITLKTVKTHVSNILSKLQVEDRTQATIYAFKHHLV 209 >gi|254688650|ref|ZP_05151904.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 6 str. 870] gi|256256897|ref|ZP_05462433.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 9 str. C68] gi|260754126|ref|ZP_05866474.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260883151|ref|ZP_05894765.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297247749|ref|ZP_06931467.1| two-component system, NarL family, response regulator [Brucella abortus bv. 5 str. B3196] gi|260674234|gb|EEX61055.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872679|gb|EEX79748.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297174918|gb|EFH34265.1| two-component system, NarL family, response regulator [Brucella abortus bv. 5 str. B3196] Length = 213 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++EG ++ EIA LGIS TV + +I +K + +G YA+ N + Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208 >gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 216 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+E L I EGKT+ EIA L IS TV ++++++ K + R Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDR 204 >gi|258653619|ref|YP_003202775.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556844|gb|ACV79786.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Nakamurella multipartita DSM 44233] Length = 901 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L + G+T+ +IA L ++ NTV Y+ +I K R+ A A A R + Sbjct: 840 LTARELDILRMVGSGRTNQQIATSLTVTVNTVKWYLKNIYTKLGATNRTEATAIARREGL 899 >gi|254464296|ref|ZP_05077707.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206685204|gb|EDZ45686.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 251 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ T+ ++ A +T + A+ A +N Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLAVETTAQAVLKAALHN 244 >gi|329848990|ref|ZP_08264018.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328844053|gb|EGF93622.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 216 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E LT ++ G T E+A L + TV Y+ I +K +R+ A AV+ + Sbjct: 156 LTGRETETLTLLARGLTIAEVAKALNLKPQTVAGYVKVIYQKLNVSSRAEATLKAVKRGL 215 >gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 243 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L WI+ GK++ IA ILG+S +TV+ + I K R+ A + + Sbjct: 176 LTPREREVLGWIARGKSNSVIAEILGVSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|89098238|ref|ZP_01171123.1| two-component response regulator involved in degradative enzyme [Bacillus sp. NRRL B-14911] gi|89087095|gb|EAR66211.1| two-component response regulator involved in degradative enzyme [Bacillus sp. NRRL B-14911] Length = 217 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 7/82 (8%) Query: 168 YQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + A + K YD+ D LT RE E + T+ EIA L I+++TV+ + Sbjct: 129 FDAMIVKEYDIMPSFDKREMQQIPGLTRREWEIFQLTVKDMTNQEIAESLSINQSTVSVH 188 Query: 221 IASIMRKTATKTRSGAIAYAVR 242 I I++KT +KT GA+A +R Sbjct: 189 IKGIVKKTGSKTIRGAVAKGLR 210 >gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 188 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+ + EIA L +S TV ++++I+ K R+ A +A Sbjct: 122 GRAGALTEREREVLGLIADGRANREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 181 Query: 241 VRNNI 245 VR+ + Sbjct: 182 VRHGV 186 >gi|213966477|ref|ZP_03394650.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum SK46] gi|213950876|gb|EEB62285.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum SK46] Length = 278 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 216 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 273 >gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] Length = 136 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 37/59 (62%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 KD +++ RE E L I+EG ++ EIA L +S +T+ ++++++ K K R+ A+ A Sbjct: 72 KDLDISNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKA 130 >gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125] gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125] Length = 209 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I EGK++ IA L I TV ++++I+ K + R+ YA R+ Sbjct: 147 ELTPRELEVLRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLEDRTQIAVYAHRHR 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I G + EIA L I+ TV N++++++ K + R+ A YAVR Sbjct: 156 QLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLIGKLELRDRTQAAIYAVRYG 215 Query: 245 I 245 I Sbjct: 216 I 216 >gi|86143242|ref|ZP_01061644.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis MED217] gi|85830147|gb|EAQ48607.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis MED217] Length = 231 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E + KT EIA + +S T++NY ++ +K K+R G + YA++N IV Sbjct: 170 SSRELEFMELACSDKTYKEIANEMCLSPKTIDNYRDTLFKKLEVKSRIGLVLYALKNKIV 229 >gi|325528716|gb|EGD05787.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 181 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|317497971|ref|ZP_07956276.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894724|gb|EFV16901.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 212 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT--ATKTRSGAIAYAVR 242 ELT +E+E L ++ EG EIA + IS+ TV +I++I+ KT A KTR AIA + Sbjct: 142 ELTAKEIEVLRFVCEGLEYSEIAERMHISQRTVKFHISNILSKTGYANKTRL-AIAVTNK 200 Query: 243 NNIV 246 N I+ Sbjct: 201 NFII 204 >gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] Length = 215 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G+I+L + L I + ++ ++ D+ +LT RE + L IS+G T+ IA L Sbjct: 125 GQIVLSEALTPILVARLRESQPAQTRDIS-----QLTRRERDILQLISDGMTNKAIARKL 179 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS +TV ++ +++K K+R A +A++N + Sbjct: 180 DISESTVKVHVKYLLKKINLKSRLEAAVWALQNGL 214 >gi|294102849|ref|YP_003554707.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617829|gb|ADE57983.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 223 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H + L+ RE E L I+EGK + +IA L IS TV + +IMRK + + Sbjct: 153 HTDSESALSHREKEVLQLIAEGKANRDIAKTLHISVKTVETHKYNIMRKINLHSVAELTK 212 Query: 239 YAVRNNI 245 YA+++ + Sbjct: 213 YAIKSGL 219 >gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] Length = 208 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG + IA LGIS +T ++ +I+ K +R+ AI A R + Sbjct: 146 LTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLGL 205 Query: 246 V 246 V Sbjct: 206 V 206 >gi|161521689|ref|YP_001585116.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352145|ref|YP_001947772.1| transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221210733|ref|ZP_03583713.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|160345739|gb|ABX18824.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189336167|dbj|BAG45236.1| transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221169689|gb|EEE02156.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] Length = 510 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|88703812|ref|ZP_01101527.1| transcriptional regulator malT [Congregibacter litoralis KT71] gi|88701639|gb|EAQ98743.1| transcriptional regulator malT [Congregibacter litoralis KT71] Length = 888 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L + G+++ EIA +S NTV ++ +I K +R A+A+A+R+ + Sbjct: 828 LSIREIEILRCLMMGESNREIAAGKALSINTVKFHLKNIFSKLGASSRDEAVAFAIRDQL 887 Query: 246 V 246 + Sbjct: 888 L 888 >gi|90423713|ref|YP_532083.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105727|gb|ABD87764.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 240 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE +CL + G+T +IA L +S + V+ Y+ + RK T AIA AVR Sbjct: 177 LSRREQQCLQGLVHGRTPGQIAGDLELSASAVHGYLRTARRKLNCATHEQAIAKAVR 233 >gi|158314279|ref|YP_001506787.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109684|gb|ABW11881.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 211 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L RE + L I+EG T+ +IA + +S TV NY+++I+ K +R+ A +A R Sbjct: 152 LGSRERQILRLIAEGMTNRQIAGCVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAAR 208 >gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured bacterium 70] Length = 210 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I G ++ EIA LG+S NTV + A+IM + + YA+ N + Sbjct: 147 LTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKTAELVVYAISNGL 206 Query: 246 V 246 V Sbjct: 207 V 207 >gi|303234262|ref|ZP_07320907.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|302494626|gb|EFL54387.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 208 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 K ELT RE+E L ++ G +D+IA LGI NTV +I ++ KT +R+ Sbjct: 139 AKSTELTPREIEVLRLLTTGAGNDQIAEELGILLNTVKTHIQHMLDKTEFTSRT 192 >gi|237798895|ref|ZP_04587356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021749|gb|EGI01806.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 78 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G +T RE E L + +G T+ EIA L IS TV ++++S++RK +TR +A Sbjct: 4 GNIMSVTIREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRVELMARC 63 Query: 241 V 241 V Sbjct: 64 V 64 >gi|148912803|ref|YP_001293382.1| Conserved hypothetical protein; putative transcriptional regulator, LuxR family [Pseudomonas phage F10] Length = 127 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A A+ F + GK L RE++C+ I+ G+TS E+A LG+ TV + + Sbjct: 4 ATITAHGFTGF---LGKGLSL--RELQCVLGIAAGRTSKELARDLGMQPGTVGKRVLAAT 58 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R+ +A A+R ++ Sbjct: 59 TKLGVTRRAALVAEAMRRGLI 79 >gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37] gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37] Length = 217 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L IS G + E+A LG++ TV +YI SI K +R+ A +A R Sbjct: 148 LTDRETEVLALISRGLRNSEVARELGLAETTVASYIKSIYGKLGISSRAEASWHATR 204 >gi|120436410|ref|YP_862096.1| LuxR family transcriptional regulator protein [Gramella forsetii KT0803] gi|117578560|emb|CAL67029.1| LuxR family transcriptional regulator protein [Gramella forsetii KT0803] Length = 347 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF T RE E + + +G + EI+ L IS T+ + ++I+++T ++T ++ YA+ Sbjct: 279 DFSFTKREKEIIGLLCKGYKTKEISDTLFISPKTIEKHRSNIIKRTNSETILESVIYAIN 338 Query: 243 NNIV 246 +N+V Sbjct: 339 HNLV 342 >gi|54297872|ref|YP_124241.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris] gi|53751657|emb|CAH13079.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris] Length = 223 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE EC+ + GK++ I +L +S+ TV +YI +I K + ++ + AV N Sbjct: 145 YGLTEREHECVFLLIRGKSAKGIGALLSLSKRTVESYIENIKNKMDCRNKAEILVKAVSN 204 >gi|33591312|ref|NP_878956.1| transcriptional regulator [Bordetella pertussis Tohama I] gi|33598581|ref|NP_886224.1| transcriptional regulator [Bordetella parapertussis 12822] gi|33603531|ref|NP_891091.1| transcriptional regulator [Bordetella bronchiseptica RB50] gi|33570954|emb|CAE40423.1| transcriptional regulator [Bordetella pertussis Tohama I] gi|33574710|emb|CAE39367.1| transcriptional regulator [Bordetella parapertussis] gi|33577655|emb|CAE34920.1| transcriptional regulator [Bordetella bronchiseptica RB50] gi|332380714|gb|AEE65561.1| transcriptional regulator [Bordetella pertussis CS] Length = 78 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 29/42 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE++CL W + GKTS E A ILGI+ TV+ ++A+ K Sbjct: 7 LTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANACAK 48 >gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 213 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 40/69 (57%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V +D ELT E + + +++G + EIA L +S+ TV +++++++ KT R+ Sbjct: 145 VQVARDVELTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELA 204 Query: 238 AYAVRNNIV 246 +A++ +I Sbjct: 205 RWAIQKSIA 213 >gi|121603022|ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120591991|gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 219 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D LT R+ E L +++G ++ IA L +S +T+ N++ +I+R TR+ A+ + Sbjct: 149 GGDESLTPRQYEVLKLLAQGLSNKAIAFKLHLSEHTIRNHVVAILRHFNALTRTEAVMAS 208 Query: 241 VR 242 R Sbjct: 209 QR 210 >gi|291515940|emb|CBK65150.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Alistipes shahii WAL 8301] Length = 192 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E LT I+ G + ++A LGI TV ++ +IM K +T +G + YA+ Sbjct: 127 LTEREAEVLTLIAGGLINKQVADRLGIGLTTVISHRRNIMEKLGIRTAAGLVVYAL 182 >gi|240172655|ref|ZP_04751314.1| transcriptional regulator, LuxR family protein [Mycobacterium kansasii ATCC 12478] Length = 968 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ I L IS NT N++ SI+ KT R+ A YA + + Sbjct: 907 LTDREIEVLRLLAAGLSNRAIGERLYISTNTAANHVRSILIKTGAANRTQAAMYAADHQL 966 Query: 246 V 246 + Sbjct: 967 L 967 >gi|291286657|ref|YP_003503473.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290883817|gb|ADD67517.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 212 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REVE L + +G T +E++ L ISRNTV+ +I I K + A+ A Sbjct: 152 LTKREVEVLKLLDQGFTYNEVSAELDISRNTVHTHIKKIYEKLQASGKEDALRKA 206 >gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 199 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+E L IS+ ++++I+ L ISR TV+ ++++I K +R GA+ A+R + Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|237785039|ref|YP_002905744.1| LuxR family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237757951|gb|ACR17201.1| transcriptional regulator, LuxR family [Corynebacterium kroppenstedtii DSM 44385] Length = 279 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 217 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 274 >gi|221197390|ref|ZP_03570437.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221204064|ref|ZP_03577082.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221176230|gb|EEE08659.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221183944|gb|EEE16344.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 510 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli EPECa14] Length = 123 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + D +LT E E L I++GKT+ EIA L +SR TV + +IM+K + I Sbjct: 55 YSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 114 Query: 240 AVR 242 A+R Sbjct: 115 ALR 117 >gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE E L ++ G ++ EIA +L + TV +++ ++ K + R A+ Sbjct: 154 HDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVV 213 Query: 239 YAVRNNIV 246 +A + +V Sbjct: 214 FAYEHGVV 221 >gi|297161015|gb|ADI10727.1| transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 257 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + A QA + + LT RE + L I+ G T+D+ A LGIS T+ ++ + Sbjct: 172 VTAIQAEISAGPPAAPPRRCTLTERENQVLALIATGHTNDQAARKLGISPRTIRKHLEGV 231 Query: 225 MRKTATKTRSGAIAYAVRN 243 K +R+ A+A+ +R Sbjct: 232 FSKANVPSRAAAVAWWLRQ 250 >gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 202 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R A+ A +N Sbjct: 141 LTDRELAVLAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKN 198 >gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 219 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D H L+ RE E ++ G T+ EIA L IS TV + ASIM K + +R Sbjct: 148 DAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPEL 207 Query: 237 IAYAVRNNIV 246 + YAV ++++ Sbjct: 208 VRYAVHHHLI 217 >gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 39/83 (46%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL Y ++ D LT REVE L ++ G ++ EIA L +S TV ++ Sbjct: 136 LLDKYAGHLPSGEDSVPNTLGTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGH 195 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R A YA + +V Sbjct: 196 VLTKLGLRDRVQAAVYAYESGLV 218 >gi|134295537|ref|YP_001119272.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138694|gb|ABO54437.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 181 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 245 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LLA +A K VH T RE L ++EG + EIA L S V Y++ Sbjct: 167 LLAQAEALPSKEPVVHS-----FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSR 221 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 + KT T +R+ + YA+ + +V Sbjct: 222 LFNKTGTSSRTELVRYALEHRLV 244 >gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 212 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L + G+++ + A LGIS +TV N++ I+ K ++ A+A A R Sbjct: 139 DLTPRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQLEAVAIASR 196 >gi|254381952|ref|ZP_04997315.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340860|gb|EDX21826.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 228 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F L+ RE E + I+ G ++ +IA IS TV N+I I K + TRS AIA Sbjct: 160 FGLSSREEEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFAKLQSTTRSEAIA 214 >gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium tumefaciens] Length = 269 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE CL W ++GKT+ E A++ GI+ TV +Y+ K T +A A + + Sbjct: 209 LSPREAMCLKWAAKGKTAPETAILTGINPRTVQHYLDKAREKLEAATVPHLVAIAKDHGL 268 Query: 246 V 246 + Sbjct: 269 L 269 >gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 215 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE I G T+ EIA L ++ TV NYI SI++KT + R+ +AVR+ Sbjct: 152 QLSERERVITALIGSGLTNKEIADELFLTIGTVKNYITSILQKTEQRDRTQLAIFAVRHG 211 Query: 245 I 245 I Sbjct: 212 I 212 >gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 245 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L ++EG + EIA L S V Y+ ++ KT T +R+ + YA+ Sbjct: 182 ELTPREQQVLEKVAEGLMNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYG 241 Query: 245 IV 246 ++ Sbjct: 242 LI 243 >gi|89902051|ref|YP_524522.1| LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346788|gb|ABD70991.1| transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 202 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 GR + RD+ + + MF+ LT RE E + ++ G+ + +IA L Sbjct: 115 GRSLQRDQPFACAVW------MFEDISSRRPVAMTLTAREREIVRQLAAGQGTKQIARTL 168 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIA 238 G+S T++ + A IMRK ++ S IA Sbjct: 169 GVSPRTIDGHRARIMRKVGAQSSSEMIA 196 >gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G+T+ ++ L +S TV ++ I K TR+ A++ A++ + Sbjct: 145 LTPREIEVLALLATGRTNRQVGERLFVSETTVKTHVNHIFTKLGVDTRAAAVSRAMKEGL 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|19553757|ref|NP_601759.1| regulatory-like protein [Corynebacterium glutamicum ATCC 13032] gi|62391399|ref|YP_226801.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC 13032] gi|145296555|ref|YP_001139376.1| hypothetical protein cgR_2464 [Corynebacterium glutamicum R] gi|21325332|dbj|BAB99953.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41326740|emb|CAF21222.1| Bacterial regulatory protein, LuxR family [Corynebacterium glutamicum ATCC 13032] gi|140846475|dbj|BAF55474.1| hypothetical protein [Corynebacterium glutamicum R] Length = 281 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 219 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276 >gi|254252565|ref|ZP_04945883.1| PAS [Burkholderia dolosa AUO158] gi|124895174|gb|EAY69054.1| PAS [Burkholderia dolosa AUO158] Length = 181 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|115526773|ref|YP_783684.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520720|gb|ABJ08704.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 223 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +I L AA M K D + LT ++V L +SEG + +IA LG+S T+ + Sbjct: 134 DIDLNAASDPEMTKLRD----RLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAH 189 Query: 221 IASIMRKTATKTRSGAIAYAVR 242 +++I++K ++R+ A+ A + Sbjct: 190 VSAILQKLGVESRTQAVIAAAK 211 >gi|322378102|ref|ZP_08052588.1| transcriptional regulatory protein DegU [Streptococcus sp. M334] gi|321280939|gb|EFX57953.1| transcriptional regulatory protein DegU [Streptococcus sp. M334] Length = 198 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G T D+I + +S+ TV+N++A+I K +R AI A Sbjct: 135 LTSREIEMLELVRNGLTIDDICEKVYVSKRTVSNHLANIFSKLGVSSRQEAIHVA 189 >gi|298252028|ref|ZP_06975831.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546620|gb|EFH80488.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1079 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L ++EG ++ +IA +L I +TV ++ S++ K ++R+ A+ A Sbjct: 1019 LTRRELEVLRLLAEGASNQQIAAVLVIQLSTVKKHVGSLLAKLGAESRTQALVKA 1073 >gi|189350294|ref|YP_001945922.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189334316|dbj|BAG43386.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 181 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|170701142|ref|ZP_02892116.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|171322886|ref|ZP_02911589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|170133964|gb|EDT02318.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|171091745|gb|EDT37277.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 181 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 245 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LLA +A K VH T RE L ++EG + EIA L S V Y++ Sbjct: 167 LLAQAEALPSKDPVVHS-----FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSR 221 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 + KT T +R+ + YA+ + +V Sbjct: 222 LFNKTGTSSRTELVRYALEHRLV 244 >gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 216 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+L+ RE E L +++G ++ EIA L I+ TV N++++I+ K + R+ A A R Sbjct: 153 FDLSEREREVLVLLAQGLSNREIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARRE 212 Query: 244 NI 245 + Sbjct: 213 GL 214 >gi|8708904|gb|AAF78795.1| putative two-component system transcriptional response regulator TcsR [Bradyrhizobium japonicum] Length = 223 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A R Sbjct: 154 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210 >gi|319791283|ref|YP_004152923.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593746|gb|ADU34812.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 230 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT R+VE L +S+GK + I LGIS TV ++A+I R + R+ A+ A Sbjct: 167 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 221 >gi|297156704|gb|ADI06416.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 195 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT ++EG ++ EIA L I TV +IA K + R+ A+ YA R+ I Sbjct: 123 LTPREAEVLTLVAEGLSNAEIARRLHIGPATVKTHIA----KAGVRDRAQAVRYAYRSGI 178 Query: 246 V 246 Sbjct: 179 A 179 >gi|295093014|emb|CBK82105.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Coprococcus sp. ART55/1] Length = 217 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G ++EL+ +E+ + +++G + EIA L +S TV NYI+SI+ K + R+ Sbjct: 152 GMEYELSSKEMNIIRLVADGLNNKEIASSLYLSEGTVRNYISSILDKLQLRDRT 205 >gi|206559838|ref|YP_002230602.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198035879|emb|CAR51770.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 181 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|27376305|ref|NP_767834.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349445|dbj|BAC46459.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A R Sbjct: 154 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210 >gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614] gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614] Length = 214 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ REVE L I+ G+++ EIA L +S T N+++SI+ K TR+ A+A A Sbjct: 153 LSAREVEVLDLIAAGRSNAEIAASLVVSPKTAKNHVSSILTKLGC-TRTEAVARA 206 >gi|256377059|ref|YP_003100719.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921362|gb|ACU36873.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 207 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+EG + EIA L S TV N I + + R A+AYA+R + Sbjct: 147 LTSREADVLRLIAEGLDTAEIATRLSYSERTVKNVFYGITTRLHLRNRPHAVAYALRKGM 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 218 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LTGRE E + I+EG T+ EI LGIS TV ++ ++ K R+ A A R+ Sbjct: 154 LTGREREIVHLIAEGMTNKEIGRSLGISPATVKAHVERLIAKLGVTDRTQAAVLASRH 211 >gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae NTUH-K2044] gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 921 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE++ L I+EG+ + EIA L IS TV +I +I K +R+ A++ A+ Sbjct: 859 ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918 Query: 245 IV 246 ++ Sbjct: 919 LL 920 >gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 209 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L + EGK++ EIA+ L IS T+ ++ I+RK R+ A+ A++ Sbjct: 146 QLTERERQVLMLMCEGKSNQEIALTLQISEGTIKFHVNGILRKLDVCDRTQAVLVALKRG 205 Query: 245 I 245 + Sbjct: 206 M 206 >gi|25029001|ref|NP_739055.1| hypothetical protein CE2445 [Corynebacterium efficiens YS-314] gi|259506010|ref|ZP_05748912.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens YS-314] gi|23494288|dbj|BAC19255.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166491|gb|EEW51045.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens YS-314] Length = 281 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE++ L ++ G T+ E A +GI TV +Y+ S+MRK TR A+ A R Sbjct: 219 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276 >gi|170732792|ref|YP_001764739.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169816034|gb|ACA90617.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 181 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|311897256|dbj|BAJ29664.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 219 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT +E L I EG T+ +I L ++ TV NY++S++ K + R+ A AY R Sbjct: 155 QLTKQERRILDLIGEGMTNRQIGNELHLAEKTVKNYVSSLLAKMGMERRTQAAAYVAR 212 >gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 198 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D L+ +E L IS GKT+ EIA L +S TV NYI+SI+ K + R A A Sbjct: 134 QDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIA 192 >gi|303239313|ref|ZP_07325841.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593099|gb|EFL62819.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 210 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E ++E ++ EIA L I+ TV N+I +I+ K R+ Y + NN Sbjct: 150 ELTSREHEIAKLVAEALSNKEIAAKLFITEGTVKNHITNILSKLDLNHRTKIALYVIENN 209 Query: 245 I 245 + Sbjct: 210 L 210 >gi|269216365|ref|ZP_06160219.1| two component transcriptional regulator, LuxR family [Slackia exigua ATCC 700122] gi|269130624|gb|EEZ61702.1| two component transcriptional regulator, LuxR family [Slackia exigua ATCC 700122] Length = 472 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + LT RE E L + +G+T IA LG+S NTV YI S+ +K+ + + Sbjct: 402 FAHEHSLTTRESEVLMLLRQGRTRTYIAAELGLSPNTVKGYIHSLYQKSEARDK 455 >gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 227 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D +T RE E L I+EGK++ +IA L IS TV ++++++ K + R+ YA Sbjct: 159 GDDSGMTEREKEVLLLIAEGKSNKDIAEELHISIKTVKTHVSNLLMKCELEDRTQLAIYA 218 Query: 241 VRNN 244 R Sbjct: 219 HRQG 222 >gi|256391094|ref|YP_003112658.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357320|gb|ACU70817.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 200 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 24/109 (22%) Query: 156 RDRLWEIGLLAAYQANMFKSYD----------VHWGK--------------DFELTGREV 191 R + + L A + + KS D VH GK D LT RE+ Sbjct: 86 RAGVLRMALAAGVRGFLLKSVDPTELERVIIHVHSGKRWIDAEVSAAAMTDDCPLTDREL 145 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + L +EG + EI+ L ++ T+ NY++S M+KT +R A A Sbjct: 146 DTLRLTTEGLSVREISTRLHLASGTIRNYLSSAMQKTGGSSRHAAARVA 194 >gi|300778489|ref|ZP_07088347.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum ATCC 35910] gi|300503999|gb|EFK35139.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum ATCC 35910] Length = 245 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ RE+E L ++ EG S EIA +L IS NTV+ + +I+ K K + A Sbjct: 189 LSPRELEVLKFVGEGYASKEIADMLSISVNTVSRHRQNILEKLKVKNSTQA 239 >gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047] gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047] Length = 199 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+E L IS+ ++++I+ L ISR TV+ ++++I K +R GA+ A+R + Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 230 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L W++ G+ EIA LG+S TV N++ ++ T + A+ A R Sbjct: 168 LSTREREVLRWVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRG 226 >gi|126433524|ref|YP_001069215.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] gi|126233324|gb|ABN96724.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] Length = 526 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ EIA L IS T N++ K R A YA+ + + Sbjct: 462 LTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYALEHGL 521 Query: 246 V 246 + Sbjct: 522 L 522 >gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 193 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE E L I++GKT+ EI +L IS TV ++ I+ K R+ A A+ Sbjct: 130 IQLTRREQEVLQLITQGKTNREIGQLLNISVGTVKIHVEHIIAKLGVSDRTQAAVRAI 187 >gi|160895826|ref|YP_001561408.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361410|gb|ABX33023.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 245 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E L ++ G T DE+A LG+SR+TV ++ I K +R+ Sbjct: 180 LSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQVSSRT 228 >gi|114764255|ref|ZP_01443483.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114543203|gb|EAU46220.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 234 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT ++ L+ I EGK + +IA L I+ TV ++ +IMRK +R+ A+ A N Sbjct: 164 LTNQQARILSLICEGKLNKQIAYDLTIAETTVKAHVTAIMRKLGVHSRTQAVLIAQEAN 222 >gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 224 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 RE + L I+EG T+ +IA + +S TV NY+++I+ K +R+ A YA R Sbjct: 168 RERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 221 >gi|313105659|ref|ZP_07791923.1| hypothetical protein PA39016_000100019 [Pseudomonas aeruginosa 39016] gi|310878425|gb|EFQ37019.1| hypothetical protein PA39016_000100019 [Pseudomonas aeruginosa 39016] Length = 128 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A A+ F + GK L RE++C+ I+ G+TS E+A LG+ TV + + Sbjct: 5 ATITAHGFTGF---LGKGLSL--RELQCVLGIAAGRTSKELARDLGMQPGTVGKRVLAAT 59 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R+ +A A+R ++ Sbjct: 60 TKLGVTRRAALVAEAMRRGLI 80 >gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 214 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWA 207 Query: 241 VRNN 244 VR+ Sbjct: 208 VRHG 211 >gi|254693131|ref|ZP_05154959.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 3 str. Tulya] gi|261213372|ref|ZP_05927653.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260914979|gb|EEX81840.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 213 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++EG ++ EIA LGIS TV + +I +K + +G YA+ N + Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208 >gi|108797883|ref|YP_638080.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866977|ref|YP_936929.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] gi|108768302|gb|ABG07024.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693066|gb|ABL90139.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] Length = 526 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E L +++G T+ EIA L IS T N++ K R A YA+ Sbjct: 458 RQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYAL 517 Query: 242 RNNIV 246 + ++ Sbjct: 518 EHGLL 522 >gi|85703125|ref|ZP_01034229.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. 217] gi|85672053|gb|EAQ26910.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. 217] Length = 251 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ E L W+ +GKT +IA+I+G++ +TV ++ + +T + A+ A N Sbjct: 186 LTPRQREVLGWVGDGKTVQDIAIIMGLTSDTVEKHLRLARHALSVETTAQAVLKAAFQNQ 245 Query: 246 V 246 + Sbjct: 246 I 246 >gi|324999341|ref|ZP_08120453.1| transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 595 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E LT + G ++ EIA L I++ T ++ +M+K T TR+ A YA+ + Sbjct: 101 LSARELEILTMLVVGPSNAEIAGELRITQRTAATHVTHLMQKLGTPTRTAAATYALDTGL 160 Query: 246 V 246 + Sbjct: 161 L 161 >gi|304411116|ref|ZP_07392732.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307301761|ref|ZP_07581519.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304350651|gb|EFM15053.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306913799|gb|EFN44220.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 221 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4] gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4] Length = 220 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REV+ L ++ G+ + EIA L +S TV ++ I KT TR+ A+ YA Sbjct: 159 LTAREVDVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYA 213 >gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 202 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT REVE L +++G + EIA + ++ TV NY+ +I+ K + R+ A+ A Sbjct: 139 DNPLTPREVEVLRLVAQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIA 196 >gi|282863505|ref|ZP_06272564.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561840|gb|EFB67383.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 209 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S K + R Sbjct: 138 AADAISAGDSPLTAREAEVLELAADGAPVAEIAARASLSQGTVRNYLSSAASKLGAENRH 197 Query: 235 GAIAYA 240 A+ A Sbjct: 198 AAVRLA 203 >gi|271963099|ref|YP_003337295.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270506274|gb|ACZ84552.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 916 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++EG + EI L I++ TV+ ++++I+ K +R+ A A A ++++ Sbjct: 856 LTGREREVLALVAEGLPNREIGERLFIAQKTVSVHVSNILGKLGVSSRTQAAAVARKDDL 915 Query: 246 V 246 + Sbjct: 916 L 916 >gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 231 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 168 IELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227 Query: 244 NI 245 + Sbjct: 228 GL 229 >gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 916 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++EG+++ EIA L I+ +TV +++ +I K +R+ A+A R + Sbjct: 855 LSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVARGRRLGL 914 Query: 246 V 246 + Sbjct: 915 I 915 >gi|297191940|ref|ZP_06909338.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151138|gb|EFH30974.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 204 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE+ L ++G+ ++A L +S TV NY+AS++RK + R AI A Sbjct: 141 EMPLTQRELSVLALAAKGEPIADVAASLHLSEGTVRNYMASVIRKVGARNRVDAIRIA 198 >gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 242 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L +++G ++ EIA L I+ TV N+I ++ +K + R A+ AVR Sbjct: 170 LPLSPREMEVLDCVAQGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDRVQALTCAVRR 229 Query: 244 N 244 Sbjct: 230 G 230 >gi|281419800|ref|ZP_06250799.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] gi|281406176|gb|EFB36856.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] Length = 318 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +L+ RE + + + +G T+ EIA L IS NTV + +I RK + +G YA+ Sbjct: 248 DEQLSDREKDVIVALVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPAGLTIYAIV 307 Query: 243 NNIV 246 NN+V Sbjct: 308 NNLV 311 >gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L+ I G ++ EIA L IS TV N+I+ I+ + + R+ A +A R Sbjct: 157 LTPREREVLSLIVAGASNREIAEALYISERTVKNHISRILSQLHLRDRTQAAMFASR 213 >gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 515 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|217972053|ref|YP_002356804.1| LuxR family transcriptional regulator [Shewanella baltica OS223] gi|217497188|gb|ACK45381.1| transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 221 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|119026460|ref|YP_910305.1| two-component response regulator [Bifidobacterium adolescentis ATCC 15703] gi|118766044|dbj|BAF40223.1| two-component response regulator [Bifidobacterium adolescentis ATCC 15703] Length = 218 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ RE++ L ++ + EIA LGIS NTV +YI + +K TK RS Sbjct: 157 QLSPRELQVLRLYTQNNNTSEIASQLGISSNTVFSYIHRVSKKIGTKNRS 206 >gi|159901708|ref|YP_001547954.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894747|gb|ABX07826.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 225 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + +G TS +IA L +S TV Y AS++RK +T++ I +AVR Sbjct: 151 LTSRERDVFAGAMQGNTSVQIAAHLCLSVRTVEAYRASMLRKLGLRTQTDLICFAVRTG 209 >gi|28868117|ref|NP_790736.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213970211|ref|ZP_03398342.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301385917|ref|ZP_07234335.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302059557|ref|ZP_07251098.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302130881|ref|ZP_07256871.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851354|gb|AAO54431.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213925092|gb|EEB58656.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331018801|gb|EGH98857.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 207 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ + L ++ GKT+ EIA LGIS TV +++S+++ TRS A A Sbjct: 147 LTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAA 199 >gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 514 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|331085012|ref|ZP_08334099.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408712|gb|EGG88177.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 208 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 P R++L+++ + +F+ + ++LT RE + +++G+++ EIA Sbjct: 112 PAIRVVLKEQTVFGAEITTRIPKLFEPQKAFDYETYQLTSREFSIIELVADGRSNREIAE 171 Query: 209 ILGISRNTVNNYIASIMRKTATKTRS 234 L + TV NY++SI+ K + R+ Sbjct: 172 ALYLGEGTVRNYLSSILEKLELRDRT 197 >gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE E L ++ G ++ EIA +L + TV +++ ++ K + R A+ Sbjct: 154 HDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVV 213 Query: 239 YAVRNNIV 246 +A + +V Sbjct: 214 FAYEHGVV 221 >gi|134101531|ref|YP_001107192.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008188|ref|ZP_06566161.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914154|emb|CAM04267.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 239 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D L+ REVE I +G ++ EIA L I+ TV N++ +I+ K R+ A A+ Sbjct: 154 GSDHGLSRREVEIAVLIEQGLSNQEIAHRLCIALATVKNHVHNILEKLGLHARADAAAWT 213 Query: 241 VRNNI 245 R + Sbjct: 214 RRQRL 218 >gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 514 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|56696847|ref|YP_167209.1| ATP-dependent transcription regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56678584|gb|AAV95250.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 249 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ TV ++ + +T + A+ A +N Sbjct: 184 LTRRQREALQWVGDGKTTQDIAILMGLTAATVEKHLRLAREALSVETTAQAVLKAALHN 242 >gi|308175073|ref|YP_003921778.1| hypothetical protein BAMF_3182 [Bacillus amyloliquefaciens DSM 7] gi|307607937|emb|CBI44308.1| RBAM_030520 [Bacillus amyloliquefaciens DSM 7] gi|328555041|gb|AEB25533.1| hypothetical protein BAMTA208_16905 [Bacillus amyloliquefaciens TA208] Length = 215 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197 RIR + +F G IL+D + L + ++F+ + H + + T RE+ ++ I Sbjct: 110 RIRDAIKSVF-NGHSILQDTV-----LDKIKDSLFRPAEAAHQIDESQFTERELSIMSLI 163 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++G ++ EI+ L IS T NYI+SI+ KT + R+ Y + + Sbjct: 164 AKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIAIYYITGKV 211 >gi|298250029|ref|ZP_06973833.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548033|gb|EFH81900.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 855 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +S+G ++ +IA L IS TV+ ++ SI K A +R+ YA+ ++ Sbjct: 794 DLSQRELEVLHLLSQGLSNKQIAAQLVISPRTVDAHVRSIYNKLALNSRAAVARYALEHH 853 Query: 245 I 245 + Sbjct: 854 L 854 >gi|291485935|dbj|BAI87010.1| hypothetical protein BSNT_05150 [Bacillus subtilis subsp. natto BEST195] Length = 200 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + GKT+ +I + L +S+ TV NYI+ I++K K R+ A + A Sbjct: 140 LTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLHAKNRTEAASIA 194 >gi|253574622|ref|ZP_04851962.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845668|gb|EES73676.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 247 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D E T RE+E ++ I++G ++ EIA + IS TV NYI SI+ KT + R+ Sbjct: 183 DLERFTERELEVMSRIAKGLSNKEIAKEIFISEGTVANYITSILNKTGLEHRT 235 >gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 232 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I+EG ++ EIA L + TV ++ + K + R+ A+ YA R+ + Sbjct: 169 LTPREVEVLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228 >gi|319901028|ref|YP_004160756.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] gi|319416059|gb|ADV43170.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] Length = 200 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L +++G + EIA L IS TV ++ +I K K+ SG YA+ + Sbjct: 134 ELSAREIEVLVLVTKGFINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYAIMHG 193 Query: 245 IV 246 V Sbjct: 194 YV 195 >gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 243 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE +CL ++ G+ S +IA LGIS N V Y+ S K T A+A A Sbjct: 176 GRYRTLSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235 >gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] Length = 198 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D L+ +E L IS GKT+ EIA L +S TV NYI+SI+ K + R A A Sbjct: 134 QDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIA 192 >gi|241763194|ref|ZP_04761253.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241367693|gb|EER61959.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 190 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E ++ GKTS +IA L IS TV+ + A +MRK T S +A Sbjct: 132 LTAREREVAQFLMTGKTSKQIARDLAISARTVDAHRARLMRKLEVSTTSALVA 184 >gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23] gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23] gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 202 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R A+ A +N Sbjct: 141 LTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKN 198 >gi|24372453|ref|NP_716495.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24346436|gb|AAN53940.1|AE015531_6 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1] Length = 255 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 190 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 237 >gi|148545863|ref|YP_001265965.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|148509921|gb|ABQ76781.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 258 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 33/50 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ R++E +S+GKT+ +IA LGI+ NTV Y++ ++R T R+ Sbjct: 189 KLSPRQLEVARLVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 238 >gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 214 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELTGRE E L I+ G ++ IA L +S TV N+I+++ K R+ AI A Sbjct: 151 ELTGREREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRA 206 >gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] Length = 218 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+ +N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212 >gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 214 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +A Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWA 207 Query: 241 VRNN 244 VR+ Sbjct: 208 VRHG 211 >gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074] gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074] gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074] Length = 219 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 ELT RE + L +++G + EIA L IS TV ++ I +K +TR+GA+A Sbjct: 157 ELTPRERDILRHLTQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVA 210 >gi|218671400|ref|ZP_03521070.1| two-component response regulator protein [Rhizobium etli GR56] Length = 223 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G D LT RE + L I G+++ EIA +LGIS T + ++ +K T +G I Sbjct: 143 VEEGSD-PLTPRERDTLGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLI 201 Query: 238 AYAVRNNI 245 YA+ + I Sbjct: 202 RYALDHGI 209 >gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E I+ G +D IA L +SR+TV N+I ++ K + R+ A+ A + Sbjct: 157 DLTPRETEVWRLIATGLDNDAIAAALDLSRSTVKNHITALFAKLDVRDRAQAVIAAYESG 216 Query: 245 IV 246 +V Sbjct: 217 LV 218 >gi|303241329|ref|ZP_07327834.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302591168|gb|EFL60911.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ T +E+E + I++GK++ +IA + +S+ + N I I KT R+ YA+ Sbjct: 152 QNITFTSKELEIIDLIAKGKSNTDIAKEVFLSKGRIANIITRIFEKTRLNDRTELAVYAI 211 Query: 242 RNNIV 246 +N+IV Sbjct: 212 KNHIV 216 >gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 213 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT +EV L I++G S IA LG+S TV + + SI K +R+ A+ A++ Sbjct: 146 DTQLTEKEVIVLKAIAKGFKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQ 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] Length = 234 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF LT RE E LT S+G +S EIA L IS TVN + +I K ++ AI A R Sbjct: 171 DFVLTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARR 230 Query: 243 NNIV 246 I+ Sbjct: 231 KGIL 234 >gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 214 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++GK++ +IA L I TV ++ +I+ K + R+ A YA +N Sbjct: 152 DLTDREMEVLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNG 211 Query: 245 I 245 + Sbjct: 212 L 212 >gi|160873996|ref|YP_001553312.1| LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859518|gb|ABX48052.1| transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315266225|gb|ADT93078.1| transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 221 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|160879008|ref|YP_001557976.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427674|gb|ABX41237.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 216 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 151 GRIILRDRLWEIGLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 G ++ D + E LL ++ N +K + K+ E +++ L ++ GK++ EIA Sbjct: 121 GLFVVHDSIKEYILLQMQRSSNEYKKISLST-KELEFDSTDLDVLKLLTRGKSNSEIASE 179 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + S TV N I+ ++ T TK R+ +A++++++ Sbjct: 180 ICYSEGTVKNRISRMLEMTGTKDRTQLAIFALQSSVI 216 >gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 219 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L ++ G +DEIA L +SR TV ++++++ K + R A+ YA Sbjct: 158 LTEREQDVLALVARGLNNDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVYA 212 >gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 230 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A +A ++ D H LT RE+E L +++G T+ EIA L ++ T+ +I I Sbjct: 147 AKEATAMRATDPHILDG--LTEREIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGHIFY 204 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K + R A+ A +V Sbjct: 205 KLGARDRVQAVVLAYEAGLV 224 >gi|260437475|ref|ZP_05791291.1| transcriptional regulator, LuxR family [Butyrivibrio crossotus DSM 2876] gi|292810108|gb|EFF69313.1| transcriptional regulator, LuxR family [Butyrivibrio crossotus DSM 2876] Length = 217 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L + EGKT+ EIA L ++ ++V YI ++ KT R+ + AV Sbjct: 144 ELSDREMETLRLLCEGKTNAEIAEKLNVAESSVRTYINRMLEKTGYTNRNRLMIAAVGKR 203 Query: 245 IV 246 +V Sbjct: 204 MV 205 >gi|259419008|ref|ZP_05742925.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259345230|gb|EEW57084.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 214 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ E+A+ L IS TV + +I RK + +G YA+ + + Sbjct: 147 LTGREQTILLELAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 212 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G + EIA L IS+ TV N+I +I+ + + R+ A +A ++ Sbjct: 150 ELTPREQEILRLIATGANNREIAQTLYISQKTVKNHITNILSRLNLRDRTQAAIWANSHS 209 Query: 245 I 245 I Sbjct: 210 I 210 >gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 518 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 245 IV 246 IV Sbjct: 490 IV 491 >gi|78066080|ref|YP_368849.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77966825|gb|ABB08205.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 181 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 202 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+ L ++ G +S +IA L +S TV NY+++I K R A+ A +N Sbjct: 141 LTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKN 198 >gi|23006109|ref|ZP_00048587.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 56 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L W+S GK S +I ILG+S TV ++ I K + R+ A A A R+ Sbjct: 2 LLWLSRGKASRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAIAARH 51 >gi|300744173|ref|ZP_07073192.1| DNA-binding response regulator [Rothia dentocariosa M567] gi|300379898|gb|EFJ76462.1| DNA-binding response regulator [Rothia dentocariosa M567] Length = 208 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 33/70 (47%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + W LTGRE E L + EIA +LG+S TV N++++ M K R Sbjct: 137 AEEAKWQGSSPLTGRETEVLRAAETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRH 196 Query: 235 GAIAYAVRNN 244 A+ A N Sbjct: 197 EAVRIARDNG 206 >gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REV+ L+ ++ G + EIA +L I+ +T +++ SI+ K R+ A+ A++ Sbjct: 146 QLSPREVQVLSELARGLANKEIADVLNITEHTTKDHLKSILAKLRVADRTEAVTVALQRG 205 Query: 245 IV 246 I+ Sbjct: 206 II 207 >gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A M KS + +E LT RE E L +S+G T EIA L IS TV + A++M Sbjct: 133 AIEAYMEKSAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK + ++ + YA++ I+ Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213 >gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 242 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ NN+ Sbjct: 181 FTPREESVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|186682209|ref|YP_001865405.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464661|gb|ACC80462.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 232 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 37/77 (48%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL A+ + + K E+T RE E L I G T+ EIA L I+ TV ++ S Sbjct: 140 LLVTEAASASANQNSASSKPSEITAREQEVLCLIGVGATNREIAQQLYITEGTVKTHVTS 199 Query: 224 IMRKTATKTRSGAIAYA 240 I+ + K RS YA Sbjct: 200 ILSRLNLKNRSQLAIYA 216 >gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0101] Length = 248 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 186 EFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYALEHG 245 Query: 245 IV 246 +V Sbjct: 246 LV 247 >gi|239816962|ref|YP_002945872.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803539|gb|ACS20606.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 214 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L+ + G++S +IA LG+S TV + SI R+ + ++ I YAV + Sbjct: 150 LTPRESEILSALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELIKYAVEH 207 >gi|238920403|ref|YP_002933918.1| csgAB operon transcriptional regulatory protein [Edwardsiella ictaluri 93-146] gi|238869972|gb|ACR69683.1| probable csgAB operon transcriptional regulatory protein [Edwardsiella ictaluri 93-146] Length = 206 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + +G ++ +I+ IL IS+NTV ++ +I +K + K R A+ +A Sbjct: 146 LTLRELEVLKAMQQGASNLDISRILYISKNTVRTHVYNIFKKISVKNRIQAVIWA 200 >gi|120597637|ref|YP_962211.1| response regulator receiver protein [Shewanella sp. W3-18-1] gi|146294224|ref|YP_001184648.1| response regulator receiver protein [Shewanella putrefaciens CN-32] gi|120557730|gb|ABM23657.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] gi|145565914|gb|ABP76849.1| transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] Length = 209 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 144 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 191 >gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W KT+ EI IL +S TV + +I RK +R A+A A++ ++ Sbjct: 177 LTPRELEILHWAWAEKTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDL 236 Query: 246 V 246 + Sbjct: 237 I 237 >gi|152999376|ref|YP_001365057.1| response regulator receiver protein [Shewanella baltica OS185] gi|151363994|gb|ABS06994.1| response regulator receiver protein [Shewanella baltica OS185] Length = 221 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus] gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri] Length = 224 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 23/33 (69%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 +LT RE ECL W EGK+S +I+ ILG S TV Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTV 216 >gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G ++ EI L IS TV ++ +IMRK + TR+GA+ A + + Sbjct: 162 LTDRETKVLELLARGMSNREIGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKLGL 221 Query: 246 V 246 + Sbjct: 222 I 222 >gi|319427568|gb|ADV55642.1| transcriptional regulator of curli operon, CsgD [Shewanella putrefaciens 200] Length = 221 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|310287962|ref|YP_003939221.1| response regulator of two-component system [Bifidobacterium bifidum S17] gi|309251899|gb|ADO53647.1| response regulator of two-component system [Bifidobacterium bifidum S17] Length = 277 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +L+A+Q G+D EL +GRE E + I+ G T E+A L IS TV + Sbjct: 192 VLSAFQGAPMDGAGGERGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 251 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +++++RK R+ +A IV Sbjct: 252 MSNVLRKLQLSNRTELTRWAADRRIV 277 >gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] Length = 921 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D+H EL+ RE + L I+EG+ + EIA L IS TV +I +I K +R+ Sbjct: 853 SPDIH----GELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 908 Query: 235 GAIAYAVRNNIV 246 A++ A+ ++ Sbjct: 909 QAMSRALEMKLL 920 >gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ I Sbjct: 157 LTDREREVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 216 >gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9] gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9] Length = 218 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA L ++ +TV ++ +I+RK +R A +AV N + Sbjct: 155 LTPRERETLRHLARGASNKEIARSLDLAESTVKVHVQNILRKLNLSSRVQAAVFAVENEL 214 >gi|29834041|ref|NP_828675.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29611166|dbj|BAC75210.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT RE+ L+ + G + EIA L +S TV NY+++I RKT + R AI Sbjct: 160 EMPLTRRELSVLSLAAGGASVAEIAGSLHLSHGTVRNYMSAITRKTGARNRIDAI 214 >gi|92115904|ref|YP_575633.1| two component LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91798798|gb|ABE61173.1| two component transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 231 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K +R+ A+ A R Sbjct: 161 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIAAAR 217 >gi|311112763|ref|YP_003983985.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310944257|gb|ADP40551.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 208 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 33/70 (47%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + W LTGRE E L + EIA +LG+S TV N++++ M K R Sbjct: 137 AEEAKWQGSSPLTGRETEVLRAAETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRH 196 Query: 235 GAIAYAVRNN 244 A+ A N Sbjct: 197 EAVRIARDNG 206 >gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C] gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 174 KSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 K DV D ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K Sbjct: 140 KLSDVQRAADPSGVSELTERETEVLVLIAQGLSNGEIADRLLVAESTIKTHVSRILVKLG 199 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A YA +V Sbjct: 200 LRDRTQAAVYAYETRLV 216 >gi|302879092|ref|YP_003847656.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581881|gb|ADL55892.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 491 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ R ++ + I+ G TS +IA L IS+ TV + ++MRK + + AYA++N Sbjct: 428 KLSRRHLDVIGLIAAGLTSAQIAARLNISQTTVITHRRNLMRKLGLHSAAELTAYAIKNK 487 Query: 245 IV 246 IV Sbjct: 488 IV 489 >gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG ++ E+A L +S TV +++ ++ K + R+ A+ A + + Sbjct: 158 LTPRETEVLRLVAEGLSNPELAARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] Length = 921 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D+H EL+ RE + L I+EG+ + EIA L IS TV +I +I K +R+ Sbjct: 853 SPDIH----GELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 908 Query: 235 GAIAYAVRNNIV 246 A++ A+ ++ Sbjct: 909 QAMSRALEMKLL 920 >gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 209 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L ++ G ++ EIA L IS TV ++++I K R+ A YA++++ Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|325276680|ref|ZP_08142406.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324098187|gb|EGB96307.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 254 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 33/50 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ R++E +S+GKT+ +IA LGI+ NTV Y++ ++R T R+ Sbjct: 185 KLSPRQLEVARLVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 234 >gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] Length = 505 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE++CL+ IS+G T +I+ L +S TVN + SI K + A++ A R Sbjct: 443 QLTPRELQCLSMISKGMTIKKISEYLHLSSETVNTHAKSIRTKMNCVNITEAVSKAFR 500 >gi|183982880|ref|YP_001851171.1| putative regulatory protein [Mycobacterium marinum M] gi|183176206|gb|ACC41316.1| conserved hypothetical regulatory protein [Mycobacterium marinum M] Length = 395 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT REVE L ++ G+T+ +IA L IS TV +++ ++RK R+ A + VR Sbjct: 331 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 387 >gi|167562980|ref|ZP_02355896.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167570172|ref|ZP_02363046.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 181 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|134291551|ref|YP_001115320.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|161522793|ref|YP_001585722.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348364|ref|YP_001941560.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] gi|134134740|gb|ABO59065.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] gi|160346346|gb|ABX19430.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189338502|dbj|BAG47570.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] Length = 212 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++ G EIA LGI+ TV+ Y A +++K +T + I YA+ + I Sbjct: 149 LTAREKAVLEGLACGNGISEIASRLGINAKTVSTYKARLLKKLEVRTEAALIRYALEHQI 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|288917777|ref|ZP_06412139.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350833|gb|EFC85048.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 308 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L ++EG + EI L S TV N + + R+ + RS A+A+A+R + Sbjct: 248 LSERELTVLRLVAEGHDTQEIGRRLNYSERTVKNVLQDVTRRFGLRNRSHAVAFALRQGL 307 Query: 246 V 246 + Sbjct: 308 L 308 >gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E +T + +GK+++EI+ +L IS T +++ M K ++ R+ + A + + Sbjct: 155 LTPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRDRAQLVVAAYESGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|220914877|ref|YP_002490185.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] gi|219952628|gb|ACL63018.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 217 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LTGR++ L ++ G+T IA +L +S T+ N +A+I R+ ++G + +A+R Sbjct: 146 RLTGRQLRILQLLAGGQTYRRIADLLLLSVKTIANEVATIGRQVQVPDKAGMVRFAIR 203 >gi|220914880|ref|YP_002490188.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] gi|219952631|gb|ACL63021.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 211 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LTGRE++ +S GK+ + IA L +S TV N +S+ RK ++ S I A+R+ Sbjct: 148 LALTGRELQIFLLLSRGKSYEMIAKYLSLSYKTVANTCSSMRRKLGAESLSELIRLAIRH 207 Query: 244 N 244 + Sbjct: 208 H 208 >gi|152994713|ref|YP_001339548.1| two component LuxR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835637|gb|ABR69613.1| two component transcriptional regulator, LuxR family [Marinomonas sp. MWYL1] Length = 213 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV L ++ G ++ EIA +L IS TV + ++ K T +G I YA+ N Sbjct: 151 DLTKREVAVLKALAAGLSNKEIAQLLNISVRTVETHRQNLKNKLDIHTSAGLIKYALANQ 210 Query: 245 IV 246 ++ Sbjct: 211 LI 212 >gi|117921851|ref|YP_871043.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614183|gb|ABK49637.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 221 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|126175697|ref|YP_001051846.1| response regulator receiver protein [Shewanella baltica OS155] gi|125998902|gb|ABN62977.1| transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 249 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 184 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 231 >gi|332305146|ref|YP_004432997.1| transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172475|gb|AEE21729.1| transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 887 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT +E E L ++S G ++ EIA L S+ TV N++ASI+ K R A+ Sbjct: 816 LTAKEQEVLRYLSTGSSNKEIASALSRSQRTVENHVASILTKLNVSNRMEAM 867 >gi|330966354|gb|EGH66614.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 207 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ + L ++ GKT+ EIA LGIS TV +++S+++ TRS A A Sbjct: 147 LTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAA 199 >gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] Length = 209 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A Y AN S D +LTGRE + L ++ G ++ EIA L IS TV +I ++ Sbjct: 133 VARYLANRQHSADPLR----QLTGRECDVLQEVARGLSNKEIAANLHISEETVKVHIRNL 188 Query: 225 MRKTATKTRSGA 236 +RK ++R A Sbjct: 189 LRKLDVRSRVAA 200 >gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L ++ G ++ EIA L +S TV +++ ++RK + R A+ +A + Sbjct: 153 ELTERELDVLRLLARGLSNGEIAAQLFVSGATVKTHVSHLLRKLCLRDRVQAVVFAYDSG 212 Query: 245 IV 246 +V Sbjct: 213 LV 214 >gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] Length = 218 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+ +N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212 >gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE++ L + EG ++ EIA L +S NT+ ++ IM K A R A A+R Sbjct: 156 QLSQRELDVLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAG 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 260 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W + GKTS EIA I GIS +V ++ + +K T +++ A+ A+ + Sbjct: 188 LSPREQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGL 247 Query: 246 V 246 V Sbjct: 248 V 248 >gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 254 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|113969064|ref|YP_732857.1| LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113883748|gb|ABI37800.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 221 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363] gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris NZ9000] Length = 209 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L ++ G ++ EIA L IS TV ++++I K R+ A YA++++ Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|118476625|ref|YP_893776.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415850|gb|ABK84269.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 219 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +V+ K E LT +E+ L I+ G + EIA +GI+ TV Y+ +I K Sbjct: 142 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 201 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 202 NSRSEAVAVSIERKLI 217 >gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b] gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b] Length = 258 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L W + GKTS E A+IL +S T+ YI + K T++ A+ A+ + Sbjct: 193 LTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKAHAVCKALSLGL 252 Query: 246 V 246 + Sbjct: 253 I 253 >gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 228 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L ++EG ++ EIA L I+ TV N++ + + K R A AY +R + Sbjct: 159 VTRRELEILRLVAEGLSNKEIAKRLVITEGTVKNHVHNALEKLHMDNRIQAAAYVIRQGL 218 >gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 198 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +D L+ +E L IS GKT+ EIA L +S TV NYI+SI+ K + R A Sbjct: 134 QDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEA 188 >gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus subtilis subsp. spizizenii str. W23] Length = 200 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + GKT+ +I + L +S+ TV NYI+ I++K K R+ A + A Sbjct: 140 LTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIA 194 >gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] Length = 207 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +V+ K E LT +E+ L I+ G + EIA +GI+ TV Y+ +I K Sbjct: 130 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 190 NSRSEAVAVSIERKLI 205 >gi|330816663|ref|YP_004360368.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] gi|327369056|gb|AEA60412.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] Length = 181 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLEISSRTVDIYRARLMRKYGT 168 >gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 243 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE +CL ++ G+ S +IA LGIS N V Y+ S K T A+A A Sbjct: 176 GRYRTLSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235 >gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 230 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E L W++EGK+ +I IL IS TV ++ S K T + AI A+ Sbjct: 165 LSRREREILQWVAEGKSQQDIGDILSISHRTVEVHLRSGREKLGALTTAQAIGRAI 220 >gi|253575646|ref|ZP_04852982.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14] gi|251844984|gb|EES72996.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14] Length = 74 Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K R+ A+ ++ Sbjct: 10 FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRAQAVVELIK 68 >gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT RE+E + ++ G ++ EI + LGI+ T +++ ++ K RS A+ A+ Sbjct: 143 KRAPLTPRELEVIRLLARGCSNKEIGMALGIAEITAKIHVSHLLSKMGVLDRSQAVMEAL 202 Query: 242 RNNIV 246 R+ I+ Sbjct: 203 RHGII 207 >gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae] Length = 277 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ +V ELT RE E L I+ G ++ EIA L +S +TV +++ +++ K ++ Sbjct: 201 FRRAEVSDVDPDELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRS 260 Query: 233 RSGAIAYA 240 R A+ YA Sbjct: 261 RVQAVVYA 268 >gi|89274998|gb|ABD65961.1| two-component system response regulator [Streptomyces fungicidicus] Length = 223 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + EL+GR +E + I+ G+T+ EIA L IS +TV ++++ I K + R+ +A Sbjct: 154 RSSELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVRNRTEIAVWAW 213 Query: 242 RNNIV 246 N +V Sbjct: 214 ENRVV 218 >gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci] Length = 246 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 185 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMG 244 Query: 245 IV 246 +V Sbjct: 245 MV 246 >gi|115526486|ref|YP_783397.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520433|gb|ABJ08417.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 247 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 165 LAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L A K+ + G D +LT ++E L++++ G ++ +IA G+S NTV + Sbjct: 155 LGASNGRGTKTATIIHGTDDRVIDDLTRPQIELLSYLANGLSNQQIAKERGMSINTVKSQ 214 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 +A++++K R+ A +AVRN+ Sbjct: 215 VANVIQKLNVANRTQAALFAVRNS 238 >gi|304405956|ref|ZP_07387614.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345199|gb|EFM11035.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +F L+ REVE L ++ G + +IA L +S TV NYI++I K K R A AY R Sbjct: 152 EFGLSAREVEVLHKLALGLRNQDIAKALYLSEGTVKNYISNIYSKMNVKGRREA-AYKAR 210 >gi|238059473|ref|ZP_04604182.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881284|gb|EEP70112.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 198 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 30/58 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L + G E+A L +S TV N++ I RKT +TR A+ A Sbjct: 135 DCPLTARETEVLRLTAAGAPVAEVAGSLRLSCGTVRNHLGRIARKTGARTRIEAVRLA 192 >gi|238898715|ref|YP_002924396.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466473|gb|ACQ68247.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 235 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 156 RDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 R++++ + L+ +Q ++++ +++ K+ L+ RE E L W S GKT EI+ I+GI Sbjct: 137 REKMY-LLLVKTHQKLLSLYEKFEIPTKKNIGLSKRENEILHWASIGKTYQEISKIIGIK 195 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ ++ +I K AI A Sbjct: 196 ECSIKFHMKNITNKLGAINSRHAIKLA 222 >gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 168 IELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227 Query: 244 NI 245 + Sbjct: 228 GL 229 >gi|170760443|ref|YP_001786768.1| LuxR family DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407432|gb|ACA55843.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A3 str. Loch Maree] Length = 217 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NIV 246 NIV Sbjct: 214 NIV 216 >gi|149189059|ref|ZP_01867347.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148837022|gb|EDL53971.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 216 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 37/59 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE+E L + G ++ +I+ L I+ +TV +++ + RK + K R AIA+A +N Sbjct: 155 DLTAREIEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQN 213 >gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 210 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E+T RE+E L I++G ++ EI L I TV +++ ++ K + R+ YA++N Sbjct: 149 EITPRELEVLKLIAQGLSNKEIGERLFIGERTVKTHVSHLLEKLQLQDRTQLAIYALQNK 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 210 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 179 HWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H F ELT RE++ L ++ G ++ EIA L IS TV +I +++RK ++R A Sbjct: 142 HSANPFRELTERELDVLQEVARGLSNKEIATTLHISEETVKVHIRNLLRKLDVRSRVAA 200 >gi|148379355|ref|YP_001253896.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. ATCC 3502] gi|153934107|ref|YP_001383731.1| LuxR family DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937750|ref|YP_001387280.1| LuxR family DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288839|emb|CAL82923.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152930151|gb|ABS35651.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. ATCC 19397] gi|152933664|gb|ABS39163.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. Hall] gi|322805695|emb|CBZ03260.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 217 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NIV 246 NIV Sbjct: 214 NIV 216 >gi|153006507|ref|YP_001380832.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152030080|gb|ABS27848.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 541 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++ G+T+ IA L +S T++ +I++I RK +R+ A A+A Sbjct: 481 LTPRELQVLRLVAAGRTNKAIAAELFLSERTIDRHISNIFRKLNVPSRAAATAHA 535 >gi|118618297|ref|YP_906629.1| putative regulatory protein [Mycobacterium ulcerans Agy99] gi|118570407|gb|ABL05158.1| conserved hypothetical regulatory protein [Mycobacterium ulcerans Agy99] Length = 411 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT REVE L ++ G+T+ +IA L IS TV +++ ++RK R+ A + VR Sbjct: 347 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 403 >gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae] Length = 254 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|85374680|ref|YP_458742.1| two-component regulator [Erythrobacter litoralis HTCC2594] gi|84787763|gb|ABC63945.1| two-component regulator [Erythrobacter litoralis HTCC2594] Length = 198 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 H D LT RE E + + EG ++ +IA+ LGIS TV N++ I+ K RS Sbjct: 137 HQRTDNCLTAREREVASLVKEGLSNKQIAIELGISPATVKNHVHMILEKLNMPRRS 192 >gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus LMG 18311] gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus CNRZ1066] Length = 200 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +++G T+ EIA L +S TV NY+ +I+ K R+ A+ A Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTDAVRIA 193 >gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 301 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++ T+ EIA L IS TV+++ A +M+K T+ +G + AV+ + Sbjct: 228 LTKREQEILGLIAQEYTNSEIAKHLYISPRTVDSHRARLMQKLGTRNTAGLVRIAVQQGL 287 Query: 246 V 246 + Sbjct: 288 L 288 >gi|313158965|gb|EFR58342.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5] Length = 251 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 29/47 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE E L IS GK S EIA++L IS +TVN + +I+ K T Sbjct: 190 LSDREKEVLQLISAGKMSKEIAILLSISIHTVNRHRQNILSKLKADT 236 >gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 209 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L + +G + EIA L IS TV ++ I K TRSGA+A A Sbjct: 147 QLTDREQDILDQLGQGLGNKEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIA 202 >gi|225009965|ref|ZP_03700437.1| two component transcriptional regulator, LuxR family [Flavobacteria bacterium MS024-3C] gi|225005444|gb|EEG43394.1| two component transcriptional regulator, LuxR family [Flavobacteria bacterium MS024-3C] Length = 209 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL--FPKGRIILRDRLWEIGLLAAYQ 169 +F + E + + + C ARI L L +G+I L L E Q Sbjct: 80 IFSSQSETVYALSAIRAGACGYLSKTARIDQILTALTQLKEGKIYLTHSLSE-------Q 132 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 KS D +L+ RE+E L ++ GK + E+A L I+ TV+ Y + +M+K Sbjct: 133 LKKEKSGDKEKSAFRKLSSREIEVLKLLASGKKNKEVAGGLDINEKTVSTYKSRLMKK 190 >gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580] gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580] gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] Length = 212 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT +EV L I++G S IA LG+S TV + + SI K +R+ A+ A++ Sbjct: 146 DTQLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQ 205 Query: 243 NNIV 246 ++ Sbjct: 206 RGVL 209 >gi|16080459|ref|NP_391286.1| two-component response regulator YvfT [Bacillus subtilis subsp. subtilis str. 168] gi|221311357|ref|ZP_03593204.1| hypothetical protein Bsubs1_18471 [Bacillus subtilis subsp. subtilis str. 168] gi|221315684|ref|ZP_03597489.1| hypothetical protein BsubsN3_18387 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320599|ref|ZP_03601893.1| hypothetical protein BsubsJ_18350 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324884|ref|ZP_03606178.1| hypothetical protein BsubsS_18506 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312958|ref|YP_004205245.1| two-component response regulator YvfT [Bacillus subtilis BSn5] gi|81814911|sp|O07019|YVFU_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yvfU gi|1945721|emb|CAB07991.1| hypothetical protein [Bacillus subtilis] gi|2635919|emb|CAB15411.1| two-component response regulator [YvfT] [Bacillus subtilis subsp. subtilis str. 168] gi|320019232|gb|ADV94218.1| two-component response regulator (YvfT) [Bacillus subtilis BSn5] Length = 200 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + GKT+ +I + L +S+ TV NYI+ I++K K R+ A + A Sbjct: 140 LTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLNAKNRTEAASIA 194 >gi|328913398|gb|AEB64994.1| Uncharacterized transcriptional regulatory protein yxjL [Bacillus amyloliquefaciens LL3] Length = 225 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197 RIR + +F G IL+D + L + ++F+ + H + + T RE+ ++ I Sbjct: 120 RIRDAIKSVF-NGHSILQDTV-----LDKIKDSLFRPAEAAHQIDESQFTERELSIMSLI 173 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++G ++ EI+ L IS T NYI+SI+ KT + R+ Y + + Sbjct: 174 AKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIAIYYITGKV 221 >gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 208 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I +G ++ EIA L ++ TV NY+ S++ K + R+ A A+ VR Sbjct: 149 LTERERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIVRRE 207 >gi|295134645|ref|YP_003585321.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294982660|gb|ADF53125.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 208 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + + RE+E L ++ T EIA + +S T++ Y ++ K ++R G YA++NN Sbjct: 145 QFSEREIEFLQYVCTEMTYKEIAAKMSLSPKTIDGYRENLFTKLQIRSRVGLAVYAIKNN 204 >gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 247 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|225076056|ref|ZP_03719255.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens NRL30031/H210] gi|241758839|ref|ZP_04756952.1| transcriptional regulatory protein DegU [Neisseria flavescens SK114] gi|224952616|gb|EEG33825.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens NRL30031/H210] gi|241321047|gb|EER57260.1| transcriptional regulatory protein DegU [Neisseria flavescens SK114] Length = 218 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YAV++ Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHK 211 Query: 245 I 245 + Sbjct: 212 V 212 >gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 231 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G+++ EIA L +S TV ++ +++ K + R A+ A + + Sbjct: 167 LTGREREVLVQVARGRSNAEIAQELSVSETTVKTHVGNVLTKLRLRDRVQAVVLAYESGL 226 Query: 246 V 246 + Sbjct: 227 I 227 >gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 213 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE E L I+ + EIA IS NTVN + +++ K K +G + YAV N Sbjct: 151 ELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAGLVKYAVENG 210 Query: 245 IV 246 +V Sbjct: 211 LV 212 >gi|4416228|gb|AAD20272.1| regulator [Streptomyces arenae] Length = 202 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE + L+ SEG + EIA L ++ TV NY++S + K + R A+ A Sbjct: 138 DHPLTERESDVLSLASEGAEASEIAAQLHLAVGTVRNYLSSAVTKLGARNRLDAVRIA 195 >gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 227 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 163 GLLAAYQANMFKSYD----VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 GL+A + A D VH + LTGRE E L ++ G ++DEIA L +S TV Sbjct: 135 GLIARFLAQGDADEDGRDRVHAERLAALTGREREVLVQVAGGHSNDEIAERLEVSPLTVK 194 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ M K + R+ + A + +V Sbjct: 195 THVNRAMSKLGARDRAQLVFIAYESGLV 222 >gi|325961668|ref|YP_004239574.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323467755|gb|ADX71440.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 416 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D+ L RE+E L ++ G+ + IA L IS NTV ++ ++ RK +R+ A+A A Sbjct: 353 DWNLGERELEVLQLLAAGQRNRSIAAKLHISENTVKFHLRNLYRKIGASSRTEAMALAHS 412 Query: 243 NNI 245 N + Sbjct: 413 NGL 415 >gi|319638279|ref|ZP_07993042.1| LuxR family Transcriptional regulator [Neisseria mucosa C102] gi|317400552|gb|EFV81210.1| LuxR family Transcriptional regulator [Neisseria mucosa C102] Length = 218 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YAV++ Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHK 211 Query: 245 I 245 + Sbjct: 212 V 212 >gi|326316964|ref|YP_004234636.1| LuxR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373800|gb|ADX46069.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 181 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 26/48 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELTGRE E + +G TS EI L IS TV Y A +MRK T Sbjct: 123 ELTGREREVAARLLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170 >gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 207 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +V+ K E LT +E+ L I+ G + EIA +GI+ TV Y+ +I K Sbjct: 130 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 190 NSRSEAVAVSIERKLI 205 >gi|261380927|ref|ZP_05985500.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava NJ9703] gi|284796180|gb|EFC51527.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava NJ9703] Length = 218 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YAV++ Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHK 211 Query: 245 I 245 + Sbjct: 212 V 212 >gi|225387858|ref|ZP_03757622.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme DSM 15981] gi|225046041|gb|EEG56287.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme DSM 15981] Length = 210 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE + + +++G + EIA L ++ TV N ++ ++ K K R+ +AV+N Sbjct: 148 FNLTDRERDIVRLVAQGMDNREIARTLYLAEGTVRNNLSRVLEKLELKDRTQLAVFAVKN 207 Query: 244 NI 245 N+ Sbjct: 208 NL 209 >gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 228 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F ++ + L+ RE+E L + G+T+ EIA L IS TV ++A+I K + Sbjct: 150 FSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGS 209 Query: 233 RSGAIAYAVRNN 244 R+ A+ Y ++ Sbjct: 210 RTEAVLYGIKRG 221 >gi|330954288|gb|EGH54548.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae Cit 7] Length = 190 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ + L ++ GKT+ EIA LGIS TV +++S+++ TR+ A A Sbjct: 130 LTARQKQVLGLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRAAAAA 182 >gi|326792258|ref|YP_004310079.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543022|gb|ADZ84881.1| two component transcriptional regulator, LuxR family [Clostridium lentocellum DSM 5427] Length = 207 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVR 242 LT REVE I+EG ++ EI L IS TV N+I+ I+ KT + R+ A+ Y R Sbjct: 150 LTEREVEVAAAIAEGLSNKEIGKKLFISDGTVRNHISVILSKTGLEHRTQIAVRYLTR 207 >gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 209 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L ++ G ++ EIA L IS TV ++++I K R+ A YA++++ Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 208 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E L +++G + +I LGI TV ++ +I+RK TR AI A R ++ Sbjct: 144 TARELEVLRLMAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAIGEAFRCGLL 203 >gi|168180051|ref|ZP_02614715.1| DNA-binding response regulator, LuxR family [Clostridium botulinum NCTC 2916] gi|182669120|gb|EDT81096.1| DNA-binding response regulator, LuxR family [Clostridium botulinum NCTC 2916] Length = 217 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NIV 246 NIV Sbjct: 214 NIV 216 >gi|153940488|ref|YP_001390741.1| LuxR family DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936384|gb|ABS41882.1| DNA-binding response regulator, LuxR family [Clostridium botulinum F str. Langeland] gi|295318814|gb|ADF99191.1| DNA-binding response regulator, LuxR family [Clostridium botulinum F str. 230613] Length = 217 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NIV 246 NIV Sbjct: 214 NIV 216 >gi|148652475|ref|YP_001279568.1| two component LuxR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571559|gb|ABQ93618.1| two component transcriptional regulator, LuxR family [Psychrobacter sp. PRwf-1] Length = 219 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE++ + I++G ++ I LGIS +TV ++ I+ KT +TR +AV N Sbjct: 159 LTSRELQVVKMIAKGHSNKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAVNN 216 >gi|146299551|ref|YP_001194142.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153969|gb|ABQ04823.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 209 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 9/111 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIR-IGLMLL-FPKGRIILRDRLWEIGLLAAYQ 169 +F L E + P + ++ +GL ++ +G+II+ + + + L A Q Sbjct: 80 IFSDLAEQMYAPNAIKAGVSGYVHKTEKLETLGLSIIKVHEGKIIINETVRKNMALIAKQ 139 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + + Y +L+ RE+E L ++S+GK ++EI+ IL ++ T++ Y Sbjct: 140 SKSERLYR-------KLSNREIEVLRYLSDGKKNNEISKILSLNEKTISTY 183 >gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|289645094|ref|ZP_06477121.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505091|gb|EFD26163.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 421 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L ++ GKT+ +IA L ++ TV +++ I+RK R+ A+A Sbjct: 349 LTPRECEVLRSLASGKTNAQIASSLFVTEGTVKSHVKHILRKLGAANRTDAVA 401 >gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 223 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLRLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|238027737|ref|YP_002911968.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237876931|gb|ACR29264.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 181 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLEISSRTVDIYRARLMRKYGT 168 >gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] Length = 207 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K +V+ K E LT +E+ L I+ G + EIA +GI+ TV Y+ +I K Sbjct: 130 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 190 NSRSEAVAVSIERKLI 205 >gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 254 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ +IA LG+S TV N++ + +RK R YA+ + Sbjct: 162 LTERETEVLRMVAKGLSAKQIAARLGLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|15640423|ref|NP_230050.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587593|ref|ZP_01677358.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121727264|ref|ZP_01680423.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147675776|ref|YP_001218664.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153818257|ref|ZP_01970924.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153822263|ref|ZP_01974930.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227080607|ref|YP_002809158.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229507036|ref|ZP_04396542.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286] gi|229508809|ref|ZP_04398301.1| hypothetical protein VCE_000215 [Vibrio cholerae B33] gi|229519797|ref|ZP_04409240.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9] gi|229530241|ref|ZP_04419629.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)] gi|229606322|ref|YP_002876970.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236] gi|254850628|ref|ZP_05239978.1| transcriptional regulator [Vibrio cholerae MO10] gi|255743782|ref|ZP_05417739.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101] gi|262153605|ref|ZP_06028733.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262167639|ref|ZP_06035343.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27] gi|262191516|ref|ZP_06049700.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT 5369-93] gi|297580534|ref|ZP_06942460.1| transcriptional regulator [Vibrio cholerae RC385] gi|298501071|ref|ZP_07010872.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9654817|gb|AAF93569.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548166|gb|EAX58238.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121630383|gb|EAX62778.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|126511216|gb|EAZ73810.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126520219|gb|EAZ77442.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146317659|gb|ABQ22198.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|227008495|gb|ACP04707.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227012251|gb|ACP08461.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229332014|gb|EEN97502.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)] gi|229344486|gb|EEO09461.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9] gi|229354212|gb|EEO19143.1| hypothetical protein VCE_000215 [Vibrio cholerae B33] gi|229355781|gb|EEO20701.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286] gi|229368977|gb|ACQ59400.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236] gi|254846333|gb|EET24747.1| transcriptional regulator [Vibrio cholerae MO10] gi|255738531|gb|EET93919.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101] gi|262023975|gb|EEY42672.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27] gi|262030632|gb|EEY49268.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262032614|gb|EEY51168.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT 5369-93] gi|297534950|gb|EFH73785.1| transcriptional regulator [Vibrio cholerae RC385] gi|297540319|gb|EFH76379.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 214 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y F+S+ V D LT RE++ L + G ++ +IA L IS TV +++ I Sbjct: 136 LLHYYRYAFQSHQVQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K K R AIA+ +N Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212 >gi|325661231|ref|ZP_08149858.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472738|gb|EGC75949.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium 4_1_37FAA] Length = 208 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 32/51 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++LT RE + +++G+++ EIA L + TV NY++SI+ K + R+ Sbjct: 147 YQLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRT 197 >gi|310640465|ref|YP_003945223.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245415|gb|ADO54982.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 589 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE+E L ++EG IA + +S TV NYI++I K ++R AI A Sbjct: 525 YGLTERELEILHCLTEGHRYKAIASKVHLSEGTVRNYISTIYSKMQVQSRDEAIEKA 581 >gi|307324110|ref|ZP_07603319.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890559|gb|EFN21536.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G+T++E+AV L ++ +TV ++ ++ RK A + R A+A + + Sbjct: 172 LTQREREVVRRVARGRTNEEVAVDLHVTLSTVKTHLGNVQRKLAARNRVEIAAWAWEHGM 231 Query: 246 V 246 V Sbjct: 232 V 232 >gi|296536416|ref|ZP_06898516.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] gi|296263266|gb|EFH09791.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] Length = 308 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 26/46 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L WI GK + +IA IL +S TVN ++ I K + Sbjct: 247 LTAREAEVLLWIGRGKANRDIAEILVMSPRTVNKHLEGIFAKLGVE 292 >gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|294626147|ref|ZP_06704754.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665211|ref|ZP_06730510.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599596|gb|EFF43726.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605034|gb|EFF48386.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 235 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGIS TV ++ I++K K R+ A YAV++ + Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|289422732|ref|ZP_06424572.1| response regulator [Peptostreptococcus anaerobius 653-L] gi|289156911|gb|EFD05536.1| response regulator [Peptostreptococcus anaerobius 653-L] Length = 199 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E E L +++G ++ EIA I +S TV NYI+ I++K + R+ A+ A N Sbjct: 139 LTSQEEELLRKVAQGLSNKEIARISYLSDGTVRNYISIILQKLDAENRTDAVRIAQEKN 197 >gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] Length = 208 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W +LT RE E L +++G T+ +IA L ++ TV NY+++ M K + R+ A Sbjct: 142 WDHSDQLTDRERELLRQVADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKA 201 Query: 240 A 240 A Sbjct: 202 A 202 >gi|160889954|ref|ZP_02070957.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492] gi|270294634|ref|ZP_06200836.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481391|ref|ZP_07940459.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|156860342|gb|EDO53773.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492] gi|270276101|gb|EFA21961.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902487|gb|EFV24373.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 203 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ++ +L+ RE+E L I++G + EIA L IS TV ++ +I K K+ SG Sbjct: 130 INTAAGHDLSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLT 189 Query: 238 AYAVRNNIV 246 YAV + V Sbjct: 190 IYAVMHGYV 198 >gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] Length = 841 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D+H EL+ RE + L I+EG+ + EIA L IS TV +I +I K +R+ Sbjct: 773 SPDIH----GELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 828 Query: 235 GAIAYAVRNNIV 246 A++ A+ ++ Sbjct: 829 QAMSRALEMKLL 840 >gi|319793052|ref|YP_004154692.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595515|gb|ADU36581.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 188 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 27/48 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + +G TS EI LGIS TV + A +MRK A T Sbjct: 130 ELTPREREVAAQVMQGLTSKEIGKALGISHRTVELHRARLMRKYAAAT 177 >gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|150024808|ref|YP_001295634.1| two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] gi|149771349|emb|CAL42818.1| Probable two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] Length = 222 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L I + ++ I+ +L IS NTV + ++M+K K+ G + +AV++++ Sbjct: 160 ITARELEILNLIGQERSGKYISNLLNISVNTVETHRKNLMKKLNVKSSIGLVIFAVKHDL 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|126737738|ref|ZP_01753468.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126721131|gb|EBA17835.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 251 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ TV ++ + +T + A+ A N Sbjct: 186 LTKRQKEALQWVGDGKTTQDIALLMGLTAATVEKHLRLARESLSVETTAQAVLKATLQN 244 >gi|152996834|ref|YP_001341669.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150837758|gb|ABR71734.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 211 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 35/49 (71%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +L+ RE++ +++S+G ++ +IA+ +GI+ TV ++ SI +KT TK R Sbjct: 149 DLSERELKVSSFVSKGLSNKQIALEMGITERTVKAHLTSIFKKTNTKDR 197 >gi|83648198|ref|YP_436633.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636241|gb|ABC32208.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 201 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 GLLA + + H + + R +E L ++++G ++ EIA LGIS TV Y++ Sbjct: 117 GLLAILRGELVTVTQCH-DQLPSFSPRHLETLEYLTQGLSNKEIAKNLGISDITVRQYVS 175 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ + R+ A+ A + I+ Sbjct: 176 DIIDHLGVENRTQAVMAAKKRGII 199 >gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083] gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ TV ++ I+ K + R+ A +A + Sbjct: 161 ELTERETEVLALIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220 Query: 245 IV 246 +V Sbjct: 221 LV 222 >gi|120611788|ref|YP_971466.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590252|gb|ABM33692.1| transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 181 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 26/48 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELTGRE E + +G TS EI L IS TV Y A +MRK T Sbjct: 123 ELTGREREVAARLLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170 >gi|56681815|gb|AAW21508.1| nitrate/nitrite regulatory protein [Methylophaga aminisulfidivorans] Length = 226 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +T RE E L +I++G + IA LGIS TV Y+ S++RK +R A+A RN Sbjct: 159 MTERERETLFYIAKGLNNKLIARELGISDGTVKVYVKSLLRKVNLHSRLELAAWAHRN 216 >gi|78046491|ref|YP_362666.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926045|ref|ZP_08187409.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78034921|emb|CAJ22566.1| putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543571|gb|EGD14990.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 235 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGIS TV ++ I++K K R+ A YAV++ + Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 202 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REVE L ++G + EIAV L +S TV NY+ +I+ K + R AI A Sbjct: 141 LTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVA 195 >gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 206 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L RE E L ++EG T+ +IA + +S TV NY++SI+ K +R+ A +A R Sbjct: 147 LGTREREILHLVAEGLTNRQIASRIHLSEKTVKNYVSSILVKLELTSRTQAAVFAAR 203 >gi|311064838|ref|YP_003971564.1| two-component system response regulator [Bifidobacterium bifidum PRL2010] gi|313140925|ref|ZP_07803118.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|310867158|gb|ADP36527.1| Two-component system response regulator [Bifidobacterium bifidum PRL2010] gi|313133435|gb|EFR51052.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 238 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +L+A+Q G+D EL +GRE E + I+ G T E+A L IS TV + Sbjct: 153 VLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 212 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +++++RK R+ +A IV Sbjct: 213 MSNVLRKLQLSNRTELTRWAADRRIV 238 >gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REVE L ++G + EIAV L +S TV NY+ +I+ K + R AI A Sbjct: 170 LTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVA 224 >gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 239 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L WI+EGKT EI+ ILG+S + V+ + K R I+ A+R + Sbjct: 178 LTIREADVLHWIAEGKTDWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAMRLGV 237 Query: 246 V 246 + Sbjct: 238 I 238 >gi|282879611|ref|ZP_06288342.1| hemerythrin HHE cation binding domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306559|gb|EFA98588.1| hemerythrin HHE cation binding domain protein [Prevotella timonensis CRIS 5C-B1] Length = 318 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L IS NTV + +I RK + SG YA+ NN+ Sbjct: 251 LSEREKEVIVSLVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPSGLTIYAIVNNL 310 Query: 246 V 246 + Sbjct: 311 I 311 >gi|260426159|ref|ZP_05780138.1| autoinducer-binding transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260420651|gb|EEX13902.1| autoinducer-binding transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 255 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT +IA I+G+++ T+ ++ +T + A+A A N Sbjct: 190 LTKRQREALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKAAFQN 248 >gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 212 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E LT ++EG T+ EIA L +S +TV ++ ++ K + R A+ A Sbjct: 148 LTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAKLEVRDRVQAVILA 202 >gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 214 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G +LT RE L +++GK++ E+A+ L IS TV + +I RK + +G Sbjct: 139 VMSGGREQLTNREQTVLLQLAQGKSNKEVALALDISVRTVETHRKNIKRKLGISSTAGLT 198 Query: 238 AYAVRNNIV 246 YA+ + ++ Sbjct: 199 RYALEHGVL 207 >gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G+++ EIAV L +S TV Y++ ++ K + R A+ A R + Sbjct: 154 LSPRELEVLRLVADGRSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTGL 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 215 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + ++ G+T++EIA L +S +TV ++ ++ RK A + R A+A + I Sbjct: 154 LTERELQVVRLVARGRTNEEIAGELFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWESGI 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|226323937|ref|ZP_03799455.1| hypothetical protein COPCOM_01714 [Coprococcus comes ATCC 27758] gi|225207486|gb|EEG89840.1| hypothetical protein COPCOM_01714 [Coprococcus comes ATCC 27758] Length = 213 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V GK +L+ +E+E L + EGKT+ EIA L ++ ++V YI ++ KT R+ Sbjct: 135 VQLGKALSCDLSDQEMETLRLLCEGKTNAEIAAKLHVAESSVRTYINRMLEKTGYTNRNR 194 Query: 236 AIAYAVRNNIV 246 + AV +V Sbjct: 195 LMVAAVSKRLV 205 >gi|212715195|ref|ZP_03323323.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM 16992] gi|212661876|gb|EEB22451.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM 16992] Length = 218 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + ++ +EG EIA L IS T+ +I SI+RK KT A+A VR+N Sbjct: 158 LTVREEQIISLCAEGMLDREIAERLRISEATIRKHIQSILRKLNCKTSRQAVALWVRSN 216 >gi|229520043|ref|ZP_04409472.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|229525089|ref|ZP_04414494.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229338670|gb|EEO03687.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229342992|gb|EEO07981.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|327483254|gb|AEA77661.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 214 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y F+S+ V D LT RE++ L + G ++ +IA L IS TV +++ I Sbjct: 136 LLHYYRYAFQSHQVQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K K R AIA+ +N Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212 >gi|29898943|gb|AAP12214.1| Two-component response regulator yocG [Bacillus cereus ATCC 14579] Length = 141 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 28/46 (60%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ Sbjct: 93 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVL 138 >gi|91975316|ref|YP_567975.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681772|gb|ABE38074.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 224 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 247 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] Length = 237 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E W + GKT+ EI+ IL S VN + +I RK +R AI A+ Sbjct: 175 LSPREIEVCKWFTIGKTTWEISRILNCSEANVNFHFKNIRRKFNVSSRGAAIIKAI 230 >gi|229065659|ref|ZP_04200888.1| Response regulator [Bacillus cereus AH603] gi|228715632|gb|EEL67427.1| Response regulator [Bacillus cereus AH603] Length = 597 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K + R AI A + Sbjct: 535 YGLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAITRARKE 594 Query: 244 NIV 246 NIV Sbjct: 595 NIV 597 >gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 231 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 168 IELTPREQSVLDLVAEGLMNKEIASRLNTSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227 Query: 244 NI 245 + Sbjct: 228 GL 229 >gi|254291301|ref|ZP_04962095.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150422757|gb|EDN14710.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 214 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y F+S+ V D LT RE++ L + G ++ +IA L IS TV +++ I Sbjct: 136 LLHYYRYAFQSHQVQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K K R AIA+ +N Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212 >gi|45934814|gb|AAS79478.1| putative response regulator [Streptomyces bikiniensis] Length = 240 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +SEG + IA S TV N + I + + R+ A+ YA+RN + Sbjct: 180 LTSREAEMLRLVSEGLDTAAIARKTSYSERTVKNVLHEITTRLQLRNRAHAVGYALRNGL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 215 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 168 YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + A + + D H G+ LTGRE E L ++ G ++ EIA L + TV ++++ Sbjct: 124 FPAAVRRLADQHGGRAPAPFPGLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSA 183 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R+ A+ A + V Sbjct: 184 VLAKLGARDRTQAVVLAYDSGFV 206 >gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 240 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE+E L W + GKT+ EIA IL +S TV + S MRK Sbjct: 176 LTPRELEVLRWSALGKTAGEIAKILCLSERTVGFHNCSSMRK 217 >gi|256830064|ref|YP_003158792.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579240|gb|ACU90376.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 222 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K+ D +G L+ RE + + ++EG T +EIA L +SR TV N+ +IM K K+ Sbjct: 149 KTVDASYGS---LSLREQQVMRLLAEGLTPEEIAAKLFVSRKTVLNHRYAIMTKLGIKSP 205 Query: 234 SGAIAYAVRNNIV 246 + +A R ++ Sbjct: 206 VAFVRHAARLGLI 218 >gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 220 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E ++ + G TS EI LGI +TV YI + K K R+ A+ Sbjct: 160 LTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAV 211 >gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 210 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205 >gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150] gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150] Length = 200 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +++G T+ EIA L +S TV NY+ +I+ K R+ A+ A Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193 >gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 221 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ GK + EIA +LG+S TV ++++++ K + R + +A R + Sbjct: 160 LTERERQVLGELATGKNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHRAGL 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 210 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + ++ LT REV+ L ++ G ++ EI L IS TV ++ +I+RK R+ A + Sbjct: 144 YDEEIPLTNREVQVLRHVALGLSNREIGRSLDISIETVKEHVQNILRKLEAGDRTEAAVW 203 Query: 240 AVRNNIV 246 AV+ +V Sbjct: 204 AVKKGLV 210 >gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 278 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L ++EG ++ E A L +S TV Y+ SI K R+ A+ A R+ Sbjct: 215 YALTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVARRS 274 Query: 244 NIV 246 ++ Sbjct: 275 GLL 277 >gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 204 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE + L ++G DEIA + +S TV NY+++ + K R A A A R Sbjct: 141 DSPLTAREADVLALAADGSPVDEIAQRVSLSAGTVRNYLSTAVMKLGVSNRHEAAATARR 200 Query: 243 NN 244 + Sbjct: 201 HG 202 >gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces violaceoruber] Length = 202 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L +EG + EIA L +S TV NY+ S++ K + R A+ A Sbjct: 141 LTEREMEVLRLTAEGDEAPEIAARLHLSTGTVRNYLTSVVTKLNARNRVDAVRIA 195 >gi|21241668|ref|NP_641250.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107032|gb|AAM35786.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 235 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGIS TV ++ I++K K R+ A YAV++ + Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 199 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++G+++ EIA L I+ TV ++++I+ K R+ A YA+++ Sbjct: 137 DLTNREREVLGLVAKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQ 196 Query: 245 I 245 + Sbjct: 197 L 197 >gi|37675846|ref|NP_936242.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|37200385|dbj|BAC96212.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] Length = 376 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E E + + G DEIAV+ + NT+ I + + KTAT+ ++ +A +R+ Sbjct: 313 FSLTLAEAEVTSLLCSGSLVDEIAVLRDATSNTIRQQIKACLAKTATRNQAELVAKVIRS 372 >gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24] gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24] gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24] Length = 228 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ TV ++ I+ K + R+ A +A + Sbjct: 162 ELTERETEVLALIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|124268421|ref|YP_001022425.1| response regulator [Methylibium petroleiphilum PM1] gi|124261196|gb|ABM96190.1| response regulator [Methylibium petroleiphilum PM1] Length = 219 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E L +++G T EI V L +SR+T+ +Y+ I RK +R+ Sbjct: 157 LTERENEVLLRVAKGFTLPEIGVQLNLSRHTIADYVKQIYRKLNVSSRA 205 >gi|326776481|ref|ZP_08235746.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656814|gb|EGE41660.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 249 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +SEG + EIA S TV N + + + + R+ A+ YA+R+ + Sbjct: 189 LTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKNVLHEVATRLELRNRAHAVGYAMRHGL 248 Query: 246 V 246 + Sbjct: 249 I 249 >gi|188580322|ref|YP_001923767.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179343820|gb|ACB79232.1| transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 486 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G + LT RE + L I G D IA L +SRNTV N+ A++ RK R+ A+ + Sbjct: 415 GANPTLTLRERQILNLICAGLDDDAIARRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWG 474 Query: 241 VRNN 244 N Sbjct: 475 RENG 478 >gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 211 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +++ REVE L +++G + E+A L +S TV ++++ I K TR+GA+A A+ Sbjct: 148 KVSPREVEILRLLAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERR 207 Query: 245 IV 246 I+ Sbjct: 208 IL 209 >gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 240 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ + A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|319937001|ref|ZP_08011411.1| LuxR family DNA-binding response regulator [Coprobacillus sp. 29_1] gi|319807937|gb|EFW04516.1| LuxR family DNA-binding response regulator [Coprobacillus sp. 29_1] Length = 214 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT--ATKTRSGAIAYAVR 242 E T +E+E L + EG EIA L +S NTV +++ I+++T A KTR AIA + Sbjct: 142 EFTSKEIEVLRLVCEGLEYGEIAEKLNVSVNTVKTHVSHILQRTGYANKTRL-AIAVTNK 200 Query: 243 NNIV 246 N I+ Sbjct: 201 NFII 204 >gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 211 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G EL+ RE E L S G S EIA L IS TV ++ASI K + ++ A+ Sbjct: 133 VSSGPTEELSQREREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGARNKTEAM 192 Query: 238 AYAVRNNIV 246 +++ I+ Sbjct: 193 LLGLKHGIL 201 >gi|254386360|ref|ZP_05001666.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345211|gb|EDX26177.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 177 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 10/91 (10%) Query: 162 IGLLAAYQANMFKSYDVHWGKDF------ELTGREVECLTWISEGKTSDEIAVILGISRN 215 IG +AA + +S D F L+ RE+ L +EG + EIA L ++ Sbjct: 91 IGRVAAGE----RSIDATLASAFMEADPMPLSPRELSVLARAAEGDSIAEIARALHLASG 146 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV NY+A++ RKT + R AI + R V Sbjct: 147 TVRNYMAAVTRKTGARNRIDAIRISRRAGWV 177 >gi|134291597|ref|YP_001115366.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134786|gb|ABO59111.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 212 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++ G EIA LGI+ TV+ Y A +++K +T + I YA+ + I Sbjct: 149 LTARENAVLEGLACGDGISEIASRLGINAKTVSTYKARLLKKLELRTEAALIRYAIEHQI 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci] Length = 247 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|111027158|ref|YP_709136.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110825697|gb|ABH00978.1| probable transcriptional regulator, LuxR family [Rhodococcus jostii RHA1] Length = 427 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L ++ GK + IA LGIS +T+ ++AS+++K R A A ++ I Sbjct: 359 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 418 Query: 246 V 246 + Sbjct: 419 M 419 >gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+ G ++ EIA L ++ TV +++ I+ K + R+ A+ +A + Sbjct: 155 QLTEREREVLENIARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESG 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + + Sbjct: 158 LTEREVEVLRLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074] gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074] gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074] Length = 229 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G D LTGRE E + +++G ++ EIA L +S TV ++ I+ K + R + Sbjct: 152 HAGLD-RLTGREREVMVLVAQGLSNGEIAAHLVLSEATVKTHVGRILTKLGLRDRVQVVV 210 Query: 239 YAVRNNIV 246 A +V Sbjct: 211 LAYETGLV 218 >gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L I+EG ++ EIA + I+ TV Y++ I+ K + R A+ A R + Sbjct: 166 LAPRELEVLQLIAEGLSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAYRVGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|134290974|ref|YP_001114743.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134163|gb|ABO58488.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 212 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++ G EIA LGI+ TV+ Y A +++K +T + I YA+ + I Sbjct: 149 LTAREKAVLEGLACGDGISEIASRLGINAKTVSTYKARLLKKLELRTEAALIRYALEHQI 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|114328487|ref|YP_745644.1| LuxR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316661|gb|ABI62721.1| transcriptional regulator, LuxR family [Granulibacter bethesdensis CGDNIH1] Length = 403 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LTGRE LT I + +++ EIA LGI + TV NY + RK + +A Sbjct: 321 LTGRERSLLTLILQRRSTGEIAQSLGIGKGTVKNYKLRLYRKANVTSERALVA 373 >gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 213 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G T+ EIA L +S TV Y M K ++R+ + YA+ +N+ Sbjct: 150 LSEREREVLLLVARGYTAAEIAEQLSLSPKTVETYRTRGMEKLGLRSRAALVQYALNHNL 209 Query: 246 V 246 + Sbjct: 210 L 210 >gi|325110042|ref|YP_004271110.1| LuxR family transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324970310|gb|ADY61088.1| transcriptional regulator, LuxR family [Planctomyces brasiliensis DSM 5305] Length = 248 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E LT+++EGK+ E+A ++ +S+ +++++ IM + R A+R + Sbjct: 186 LTPRQLEVLTYLAEGKSVKEVAQVMHLSQKSIDSHKYRIMNRLHVHDRVHLSRIAIREGL 245 Query: 246 V 246 + Sbjct: 246 I 246 >gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K LT RE+E L S+G+ S +IA L +S TV NY+ S++ K + R AI A Sbjct: 126 KPQPLTPRELEVLLLASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDAIRIA 184 >gi|213968144|ref|ZP_03396289.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383850|ref|ZP_07232268.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato Max13] gi|302058473|ref|ZP_07250014.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato K40] gi|302133415|ref|ZP_07259405.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927124|gb|EEB60674.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331016272|gb|EGH96328.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 87 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|187933177|ref|YP_001885914.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B] gi|187721330|gb|ACD22551.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B] Length = 243 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E + I+ G T+ EI + L IS TV ++ +I+RK K R + + N+ Sbjct: 181 KLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIFCKSNS 240 Query: 245 I 245 I Sbjct: 241 I 241 >gi|290956373|ref|YP_003487555.1| response regulator [Streptomyces scabiei 87.22] gi|260645899|emb|CBG68990.1| putative response regulator [Streptomyces scabiei 87.22] Length = 299 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 34/67 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ LT REV+ L ++ G T+ A LG+ TV Y+ S MRK TR A+ Sbjct: 232 GGERVALTAREVDVLACVAMGATNAVAAQRLGLRPETVKAYLRSAMRKLGAHTRLEAVVA 291 Query: 240 AVRNNIV 246 A R ++ Sbjct: 292 ARRAGLL 298 >gi|255035822|ref|YP_003086443.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254948578|gb|ACT93278.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 220 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE + L ++EG +S +IA IS NTV N ASIM+K + + I+ A++ Sbjct: 164 ITPREQQILKCLTEGMSSKDIAEKFDISSNTVANQRASIMKKANVRNTAELISLAMK 220 >gi|126653823|ref|ZP_01725686.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] gi|126589660|gb|EAZ83797.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] Length = 229 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + I+ G ++ E+A + +S T+N Y+ S ++K K R+ AI+ + + Sbjct: 169 LSKRELEVMRQIALGDSTKEMADFMNLSELTINQYVKSAIKKLQAKNRTHAISILYQEGV 228 Query: 246 V 246 + Sbjct: 229 I 229 >gi|84684966|ref|ZP_01012866.1| autoinducer-binding transcriptional regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667301|gb|EAQ13771.1| autoinducer-binding transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 253 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 33/54 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R++E L W+SEGK++ ++A I+ +S T+ ++ K T + AIA Sbjct: 158 KLSKRQLEVLEWVSEGKSNQDVATIMDVSVPTIEKHLRLAREKLGVDTTAQAIA 211 >gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE E L ++EG ++ EIA L I TV +++SI+ K + R AI +A + Sbjct: 152 DADLTPREREVLAALAEGSSNAEIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVWAYQ 211 Query: 243 NN 244 ++ Sbjct: 212 HH 213 >gi|260467229|ref|ZP_05813405.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029004|gb|EEW30304.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 210 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG + IA L IS +T ++A+I+ K R+ AIA A+R + Sbjct: 148 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|302557405|ref|ZP_07309747.1| response regulator [Streptomyces griseoflavus Tu4000] gi|302475023|gb|EFL38116.1| response regulator [Streptomyces griseoflavus Tu4000] Length = 231 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++EG + EIA L S TV N + + + + R+ A+AYA+R Sbjct: 171 LTAREADVLRLVAEGLDTTEIAAKLAYSERTVKNVLHGLTTRLHLRNRAHAVAYALREGF 230 Query: 246 V 246 + Sbjct: 231 I 231 >gi|297543943|ref|YP_003676245.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841718|gb|ADH60234.1| transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 257 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 14/145 (9%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 +P E +C +F I P +DN+ D++ I + + + I Sbjct: 124 KPEEHYCDIFKQWY-CIATPFHIDNQIVGY-LDISIIEHNMA----------DEMMGFID 171 Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL AN +K D+ +D E LT +++E + ++G T I++ LG+ TV + Sbjct: 172 LLVYKIANEYKREMDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPATVKYHK 231 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I++K K AIA A+R N++ Sbjct: 232 KEIIKKLRVKNFQQAIAKAIRLNLI 256 >gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 250 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE + L I+EG + +A L +S TV ++ SI+RK + R+ A++ A R Sbjct: 171 DMPLSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGARDRTHAVSKAFR 230 Query: 243 NNIV 246 + ++ Sbjct: 231 SGLL 234 >gi|229189937|ref|ZP_04316947.1| Response regulator [Bacillus cereus ATCC 10876] gi|228593611|gb|EEK51420.1| Response regulator [Bacillus cereus ATCC 10876] Length = 212 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEEFKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|222081090|ref|YP_002540453.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter K84] gi|221725769|gb|ACM28858.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter K84] Length = 500 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE E L I G++ E++ L +S+NT+ N++AS+ K R+ A+ +A Sbjct: 426 LDLSDREKEILALICRGQSDAEMSETLHLSKNTIRNHVASLYIKIGVNRRAAAVIWA 482 >gi|18699286|gb|AAL78509.1|AF456804_1 probable transcriptional activator TraR [Sinorhizobium meliloti] gi|38374154|gb|AAR19282.1| TraR [Sinorhizobium meliloti] Length = 234 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ CL W + GKT+ E A++ GI+ TV +Y+ K ++ +A A + Sbjct: 174 LSPREMLCLVWATRGKTAPETAMLTGINPRTVQHYLDKARAKLGAESVPQLVAIAKDRGL 233 Query: 246 V 246 V Sbjct: 234 V 234 >gi|115523303|ref|YP_780214.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517250|gb|ABJ05234.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 237 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE +CL + G+T +IA L +S + V+ Y+ + RK T AIA AVR ++ Sbjct: 177 LSSRERQCLNGLVRGRTPGQIAGELDLSGSAVHGYLRTARRKLDCATVEQAIAKAVRLDL 236 Query: 246 V 246 + Sbjct: 237 L 237 >gi|316932396|ref|YP_004107378.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315600110|gb|ADU42645.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 225 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 211 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ RE E L ++EG +IA LG+S +TV NYI I K ++ S A+A R+ Sbjct: 153 ELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRRIYEKLHVRSSSQAVARYYRH 211 >gi|115351402|ref|YP_773241.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172060441|ref|YP_001808093.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115281390|gb|ABI86907.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|171992958|gb|ACB63877.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 181 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRMLDISSRTVDIYRARLMRKYGT 168 >gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri] Length = 222 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 23/32 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTV 217 LT RE ECL W SEGK++ +I+ ILG S TV Sbjct: 183 LTKREKECLAWASEGKSTWDISKILGCSERTV 214 >gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 277 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 215 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 266 >gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099] gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099] Length = 211 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG + IA L IS +T ++A+I+ K R+ AIA A+R + Sbjct: 149 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 247 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 212 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ LT ++ G + EIA L I+ TV + +I RK R+ A++ A++ Sbjct: 149 ELTARELDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQRG 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|239820766|ref|YP_002947951.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239805619|gb|ACS22685.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 212 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L R+ + L WI EGKT+ EIA + TV NY+++I+ ++R+ Sbjct: 157 LAPRQAQVLQWILEGKTNKEIAEAASLGEGTVKNYVSTILLLFGVRSRA 205 >gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 210 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205 >gi|56418740|ref|YP_146058.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56378582|dbj|BAD74490.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 221 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 T RE++ + I++G ++ EIA L +S TV NYI SI+ KT + R+ Y Sbjct: 161 FTERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214 >gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 147 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + + L+ RE E LT I++G ++ EIA L +S NT+ + +++ K K R+ A+ A Sbjct: 83 EKYNLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRRTQAVQKA 141 >gi|326385167|ref|ZP_08206835.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196132|gb|EGD53338.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 212 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G++ LT RE E L I +G ++ +I G+S N+V YI + R+ TR+ A+ + Sbjct: 140 GREEGLTQREAEILALIVQGLSNADIVEQTGLSINSVKTYIRTCYRRIGVNTRAQAVLWG 199 Query: 241 VRNNIV 246 V + V Sbjct: 200 VNHGFV 205 >gi|325923449|ref|ZP_08185108.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546071|gb|EGD17266.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 194 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT RE E +S G ++ EIA L I TV N++ S++RKT +TR A+ Sbjct: 131 YRLTPREREVADLLSRGLSNKEIARDLRIELATVKNHVHSVLRKTDARTRLQAV 184 >gi|320457478|dbj|BAJ68099.1| putative two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 132 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E ++ + G TS EI LGI +TV YI + K K R+ A+ Sbjct: 72 LTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAV 123 >gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 266 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + G D LT +E+E + +++ G ++ EIA L S TV NY++ I +K + R+ Sbjct: 186 NQGTDL-LTEKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSIIFQKLHLRDRTQVAI 244 Query: 239 YAVRNNIV 246 +A+R ++ Sbjct: 245 FALRQGLL 252 >gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 210 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205 >gi|282865307|ref|ZP_06274359.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559780|gb|EFB65330.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 381 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 33/64 (51%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S WG EL+ RE E + I+ G T+ +IA IS+ TV N+I I K +R Sbjct: 304 SVPAAWGLVDELSEREREVMGLIASGMTNQQIAATCFISQKTVKNHINRIFAKLNAGSRG 363 Query: 235 GAIA 238 AIA Sbjct: 364 EAIA 367 >gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] Length = 214 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ E+A L IS TV + +I RK + +G YA+ + + Sbjct: 147 LTGREQTILLELAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|261418524|ref|YP_003252206.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765338|ref|YP_004130839.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374981|gb|ACX77724.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110204|gb|ADU92696.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 221 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 T RE++ + I++G ++ EIA L +S TV NYI SI+ KT + R+ Y Sbjct: 161 FTERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214 >gi|194016391|ref|ZP_03055005.1| putative LuxR family transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194011864|gb|EDW21432.1| putative LuxR family transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 335 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 9/112 (8%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWG 181 G+D S+T R+ GL L R+ E ++ +A ++ D+ + Sbjct: 221 GGIDQTAASMT----RLPTGLFLSLQAFRLAQAAGQEEAVMIHIKRA---QTNDILPYAA 273 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K ++LT RE+ L + +G+++ EIA L IS +TV++++ ++++KT +R Sbjct: 274 KTYKLTEREMNVLDCLLKGQSTKEIASTLFISTHTVHDHVKAMLQKTNLSSR 325 >gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 255 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 12/162 (7%) Query: 86 LVRCMALSEKDKYYNVLQRPTE-LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 LV ++ +E +Y + R E L H L T P +D + + F +A+ + + Sbjct: 91 LVNGLSWNEIGQYVTLNSRQIETLESARRHGLNTGFTIPLRLDG-FENAMFSMAKRKANV 149 Query: 145 MLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 I +RL +G + +A+ + D L+ R+V+C+ +++G + Sbjct: 150 --------ITSEERLLACLVGSVTFARAHALVTADAGIFTPVHLSPRQVDCVALLAKGYS 201 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EIA LGIS TV YI R K R AVR+ Sbjct: 202 DFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDG 243 >gi|157694336|ref|YP_001488798.1| LuxR family transcriptional regulator [Bacillus pumilus SAFR-032] gi|157683094|gb|ABV64238.1| possible LuxR family transcriptional regulator [Bacillus pumilus SAFR-032] Length = 335 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 42/62 (67%), Gaps = 2/62 (3%) Query: 174 KSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +++D+ + K ++LT RE+ L + +G+++ EIA L IS +TV++++ ++++KT Sbjct: 264 QTHDILPYAAKTYKLTEREMNVLDCLLKGQSTKEIASTLFISTHTVHDHVKAMLQKTNLS 323 Query: 232 TR 233 +R Sbjct: 324 SR 325 >gi|149914675|ref|ZP_01903205.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b] gi|149811468|gb|EDM71303.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b] Length = 224 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L + +G T+ +I+ LG+S NTV Y+ +I +K +R AIA V N Sbjct: 165 LSRREHEILALLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGAAIAKYVAGN 223 >gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 216 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +G L AN F+S LT RE E L S+GK++ IA L ++ TV +++ Sbjct: 141 MGKLRGRLANPFES----------LTNREQEVLVLASQGKSNRAIAKDLVLTEATVKSHM 190 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A + K K R+ A+A A I+ Sbjct: 191 AHVFSKLNVKNRTAAVAVARERGII 215 >gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 200 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +++G T+ EIA L +S TV NY+ +I+ K R+ A+ A Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193 >gi|237799435|ref|ZP_04587896.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022291|gb|EGI02348.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 220 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L I GK++ E+A LG+S TV + + IM++ +G + + VR I Sbjct: 156 LTARQLEILRLIVRGKSTREMASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRERI 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|194291238|ref|YP_002007145.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193225073|emb|CAQ71084.1| putative response regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 228 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L I G + EIA LG+S TV + ++ RK + R+G + YAV Sbjct: 164 LTPRERDILRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAV 219 >gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 232 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E LT ++EG T+ EIA L +S +TV ++ ++ K + R A+ A Sbjct: 168 LTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILA 222 >gi|148273924|ref|YP_001223485.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831854|emb|CAN02824.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 206 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L +++G ++ ++A L I+ TV +++ + K +R+GA+A A Sbjct: 143 VSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSRTGAVAAA 199 >gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++G T+ +IA L IS TV N++ S +RK R YA+ + Sbjct: 155 QLTDRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHG 214 Query: 245 I 245 + Sbjct: 215 L 215 >gi|118722505|gb|ABL09961.1| regulator [Streptomyces echinatus] Length = 202 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L W SEG + ++A +S TV N+++SI+ K ++R A+ A Sbjct: 141 LTPRETEILRWASEGGSVRDVADAARLSPGTVRNHLSSIVTKLGARSRLDAVRIA 195 >gi|88807322|ref|ZP_01122834.1| response regulator like protein [Synechococcus sp. WH 7805] gi|88788536|gb|EAR19691.1| response regulator like protein [Synechococcus sp. WH 7805] Length = 234 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 32/64 (50%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE L + G T+ EI L I+ T ++ SIMRK K R+ A A Sbjct: 168 GQAHALSDRERMVLQQLCNGLTNREIGEALTIAETTARGHVQSIMRKLNVKDRTAAAVEA 227 Query: 241 VRNN 244 +R + Sbjct: 228 IRRH 231 >gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G ++ EIA L ++ TV ++ I+ K + R+ A YA + + Sbjct: 159 LTERETEVLALIAQGLSNAEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESGV 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 236 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ TV +I I+ K + R+ A+ +A + Sbjct: 170 ELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESG 229 Query: 245 IV 246 +V Sbjct: 230 LV 231 >gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 200 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +++G T+ EIA L +S TV NY+ +I+ K R+ A+ A Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193 >gi|224540370|ref|ZP_03680909.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus DSM 14838] gi|224518021|gb|EEF87126.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus DSM 14838] Length = 219 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H KD LT E L I+ GKT+ EIA +S +TVN++ +I RK A Sbjct: 145 HTLKDDLLTPAERSVLKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLGVNNVHEATK 204 Query: 239 YAVRNNIV 246 YA++ IV Sbjct: 205 YAMKAGIV 212 >gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 208 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A + ++ G LT RE E L ++EG + IA LGIS +T ++ +I+ K Sbjct: 132 ATLLRAPAAEAGGP--LTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAILGKLG 189 Query: 230 TKTRSGAIAYAVRNNIV 246 +R+ AI A R +V Sbjct: 190 AGSRAEAIVRAARLGLV 206 >gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 200 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +++G T+ EIA L +S TV NY+ +I+ K R+ A+ A Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLNAGNRTEAVRIA 193 >gi|317055507|ref|YP_004103974.1| LuxR family two component transcriptional regulator [Ruminococcus albus 7] gi|315447776|gb|ADU21340.1| two component transcriptional regulator, LuxR family [Ruminococcus albus 7] Length = 209 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 34/51 (66%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + ++ +E E L ++EGK++ EI+ L +S TV NYI+S++ K + + R+ Sbjct: 146 YGISEKEKEILELVAEGKSNKEISAELFLSEGTVRNYISSLLDKLSLRDRT 196 >gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L+ I++G ++ EIA L ++ TV ++ I+ K + R+ A +A + Sbjct: 158 DLTERETEVLSLIAQGLSNAEIAQSLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|229014836|ref|ZP_04171934.1| Response regulator [Bacillus mycoides DSM 2048] gi|228746456|gb|EEL96361.1| Response regulator [Bacillus mycoides DSM 2048] Length = 290 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K + R AI A + Sbjct: 228 YGLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAIKRARKE 287 Query: 244 NIV 246 NIV Sbjct: 288 NIV 290 >gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28] gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28] Length = 592 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G + IA L +S TV NY +S K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|254464109|ref|ZP_05077520.1| two component response regulator [Rhodobacterales bacterium Y4I] gi|206685017|gb|EDZ45499.1| two component response regulator [Rhodobacterales bacterium Y4I] Length = 214 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ E+A L IS TV + +I RK + +G YA+ + + Sbjct: 147 LTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 207 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L +++G + E+A LGIS TV Y M K +RS + YA R Sbjct: 147 LSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATYRERGMEKLGLASRSELLRYAARKG 205 >gi|86751663|ref|YP_488159.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574691|gb|ABD09248.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 224 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 220 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K A + R+ A +A Sbjct: 155 ELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEAG 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1003 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE E L ++ G ++ EIA L I NTV ++ +I K T R+ AIA A Sbjct: 942 QLSQREQEVLHLLASGHSNAEIAETLIIGLNTVKTHLKNIYGKLGTHNRTQAIAQA 997 >gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G T+ EIA +G+ T ++A+++ K + R+ A+ A + Sbjct: 155 LTGREAEVLRLMATGLTNAEIAGRMGVGPATTKTHVAAVLGKIGARDRTQAVIAAYESGF 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|297564113|ref|YP_003683086.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848562|gb|ADH70580.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G + LT RE E L S+G T IA L ++ TV NY+++ + KT R AI A Sbjct: 158 GGESPLTDRETEVLRAASDGATVARIAAALHLTEGTVRNYLSNAIGKTGADNRMSAIRTA 217 >gi|254510855|ref|ZP_05122922.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium KLH11] gi|221534566|gb|EEE37554.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium KLH11] Length = 250 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ TV ++ + +T + A+ A N Sbjct: 185 LTKRQREALQWVGDGKTTQDIALLMGLTAATVEKHLRLAREALSVETTAQAVLKAALQN 243 >gi|71065169|ref|YP_263896.1| nitrate/nitrite response regulator [Psychrobacter arcticus 273-4] gi|71038154|gb|AAZ18462.1| nitrate/nitrite response regulator, possibly NarL [Psychrobacter arcticus 273-4] Length = 219 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LTGRE++ + I+EG ++ IA L I+ +TV ++ I+ KT +TR A + V + Sbjct: 159 LTGRELQVIQMIAEGLSNKMIANKLDIAESTVKVHVKHILNKTGLRTRVDAAVWTVNH 216 >gi|299134073|ref|ZP_07027266.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298590820|gb|EFI51022.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 225 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 ++ L A +M K D + LT ++V L +SEG + +IA LG+S T+ + Sbjct: 135 DVDLTAGVDPDMAKLRD----RLITLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAH 190 Query: 221 IASIMRKTATKTRSGAIAYAVR 242 +++I++K ++R+ A+ A + Sbjct: 191 VSAILQKLGVESRTQAVIVAAK 212 >gi|288921041|ref|ZP_06415332.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347559|gb|EFC81845.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 1061 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE + ++EG T+ +IA L IS T N++ I+ K + RS A+ VRN+ Sbjct: 992 LSPRERQVARLVAEGLTNRQIAARLVISERTAQNHVQHILTKLGFRARSQIAAWVVRNS 1050 >gi|288921805|ref|ZP_06416022.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346829|gb|EFC81141.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 694 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE + L +G T +IA L +S TV NY+++++ KT T+ R A+ A Sbjct: 634 LTGRERDVLVAARDGATVADIARRLFLSEGTVRNYLSAVIAKTGTRNRMEALRVA 688 >gi|288941613|ref|YP_003443853.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896985|gb|ADC62821.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 209 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E LT + G T+ +IA LGIS TV N+ A +M K +G +A R + Sbjct: 142 QLTPREHEVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMG----AGNLAELCRMS 197 Query: 245 IV 246 +V Sbjct: 198 VV 199 >gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29] gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29] Length = 592 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G + IA L +S TV NY +S K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3] gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3] Length = 592 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G + IA L +S TV NY +S K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|226948658|ref|YP_002803749.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] gi|226842846|gb|ACO85512.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] Length = 217 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NIV 246 NIV Sbjct: 214 NIV 216 >gi|254504396|ref|ZP_05116547.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222440467|gb|EEE47146.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 185 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 30/47 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +LT RE E + +S+GKTS EIA LG+S TV + A +++K K Sbjct: 121 QLTKREREVVLLLSQGKTSKEIARDLGLSPRTVEDVRARLLKKFEVK 167 >gi|212640294|ref|YP_002316814.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561774|gb|ACJ34829.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 199 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 38/63 (60%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + LT E++ L +++ +TS +I+ L IS+ T+ +++SI K +R+GA+A Sbjct: 132 YSTKHGLTNIEIDILQMLADDQTSVQISERLKISKRTMERHLSSIFEKLGVLSRTGAVAE 191 Query: 240 AVR 242 A+R Sbjct: 192 ALR 194 >gi|156740233|ref|YP_001430362.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231561|gb|ABU56344.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 227 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ELT RE+E L I+EG + EIA L IS NT ++++I+ K R Sbjct: 153 ELTSRELEILQLIAEGLGNREIAARLDISYNTAMKHVSNILAKLKVSNR 201 >gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 220 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE E L + G + EIA L S V Y++ ++ KT T +R+ + +A+ Sbjct: 150 DLDLTPREQEVLLLVYAGLMNKEIAGRLERSTRNVEKYVSRLLAKTGTSSRTELVRFALE 209 Query: 243 NNIV 246 + +V Sbjct: 210 HGLV 213 >gi|39933929|ref|NP_946205.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647776|emb|CAE26296.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 225 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 224 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G ELT RE E L ++ G ++ EIA L ++ +TV +++ I+ K + R+ A + Sbjct: 155 GGAYGELTERETEVLVHVACGLSNQEIAAKLYVAESTVKTHVSRILVKLGLRDRTQAAVF 214 Query: 240 AVRNNIV 246 A N +V Sbjct: 215 AYENRLV 221 >gi|221369141|ref|YP_002520237.1| Two-component response regulator [Rhodobacter sphaeroides KD131] gi|221162193|gb|ACM03164.1| Two-component response regulator [Rhodobacter sphaeroides KD131] Length = 220 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L ++EG ++ E+A+ L + TV +Y+ +I++K + R+ A A R+ Sbjct: 158 QLTAREEDILRLVAEGCSNKEVALALDLQEKTVKHYMTAILQKLQVRNRTEAALMAQRH 216 >gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 277 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE +CL ++GK+ + ILG+S TV+N++ + R+ TR A+ +A+ Sbjct: 182 LSRRERQCLELAAQGKSDWVSSRILGLSERTVHNHVENAKRRLQVATRMQAVMHAL 237 >gi|167039015|ref|YP_001662000.1| regulatory protein LuxR [Thermoanaerobacter sp. X514] gi|300913396|ref|ZP_07130713.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307723589|ref|YP_003903340.1| LuxR family transcriptional regulator [Thermoanaerobacter sp. X513] gi|166853255|gb|ABY91664.1| regulatory protein, LuxR [Thermoanaerobacter sp. X514] gi|300890081|gb|EFK85226.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307580650|gb|ADN54049.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp. X513] Length = 257 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 14/145 (9%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 +P E +C +F I P +DN+ D++ I + + + I Sbjct: 124 KPEEHYCDIFKQWY-CIATPFHIDNQIVGY-LDISIIEHNMA----------DEMMGFID 171 Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL AN +K D+ +D E LT +++E + ++G T I++ LG+ +TV + Sbjct: 172 LLVYKIANEYKREMDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPSTVKYHK 231 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I++K K AIA A++ N++ Sbjct: 232 KEIIKKLRVKNFQQAIAKAIKLNLI 256 >gi|113869645|ref|YP_728134.1| response regulator [Ralstonia eutropha H16] gi|113528421|emb|CAJ94766.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 224 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L I G + EIA LG+S TV + ++ RK + R+G + YAV Sbjct: 160 LTPRERDILRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAV 215 >gi|328765792|gb|EGF75911.1| hypothetical protein BATDEDRAFT_93225 [Batrachochytrium dendrobatidis JAM81] Length = 152 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E + IS G+T+ EIA +GIS TV Y+ ++K R+ +A R Sbjct: 91 LSNREFEVMNKISYGETTKEIASSMGISELTVKQYVKLALKKLNAANRAHGVAELFR 147 >gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 210 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205 >gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 216 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I++G + EIA G+S TV N SIM+K + + YAVR + Sbjct: 153 LSAREREILQLIADGSNAKEIAFAFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212 >gi|229815028|ref|ZP_04445365.1| hypothetical protein COLINT_02069 [Collinsella intestinalis DSM 13280] gi|229809258|gb|EEP45023.1| hypothetical protein COLINT_02069 [Collinsella intestinalis DSM 13280] Length = 275 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE E + ++EG + EI+ IS TV N I+S+++KT K R+ Sbjct: 214 ELTEREYEVVRLVAEGLDNHEISAAAFISEGTVRNRISSVLQKTGHKNRT 263 >gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|150377494|ref|YP_001314089.1| autoinducer-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032041|gb|ABR64156.1| Autoinducer-binding domain protein [Sinorhizobium medicae WSM419] Length = 320 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE CL W +GK E A I GI TV +Y+ + RK ++ +A A + + Sbjct: 260 LSPREAMCLMWAMKGKNGPETAKITGIKPRTVQHYLDNARRKLGAQSVPHLVAIARDHGL 319 Query: 246 V 246 V Sbjct: 320 V 320 >gi|120404927|ref|YP_954756.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] gi|119957745|gb|ABM14750.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] Length = 399 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT REVE L ++ G+T+ +IA L IS TV +++ ++RK R+ A + VR Sbjct: 334 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 390 >gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 200 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +++G T+ EIA L +S TV NY+ +I+ K R+ A+ A Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193 >gi|291540325|emb|CBL13436.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis XB6B4] Length = 261 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 H +FEL+ RE E L + G ++ +IA +GIS +TV ++ I K TR+ Sbjct: 191 THLAAEFELSEREKEALLCMDGGMSNAQIAENMGISLSTVKKHVYHIFEKVGVDTRA 247 >gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 267 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 205 LTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAV 256 >gi|260221745|emb|CBA30616.1| hypothetical protein Csp_C24440 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 235 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 H G + L+ RE + ++ GKT EI LG++ NTV+ Y I+ KT TK Sbjct: 166 HQGAE-ALSHREHQVFRLLTAGKTVGEIGAQLGLASNTVSTYRQRILEKTGTK 217 >gi|66045285|ref|YP_235126.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255992|gb|AAY37088.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 87 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|15077445|gb|AAK83172.1|AF333038_14 putative two-component regulator [Streptomyces viridochromogenes] Length = 206 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR--SGAIAYA 240 L+ RE++ +S G ++ EIA +LG++ TV ++A I+ K ++R +G +A+A Sbjct: 127 LSDRELQVFLLLSHGYSNREIAALLGVTERTVKAHMAQILAKLGVESRLQAGLVAFA 183 >gi|223940662|ref|ZP_03632503.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890674|gb|EEF57194.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 241 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 166 AAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A+ N+ S + GK L+ RE + + I+ GK+ EIA L +S T++ Y Sbjct: 158 ASLAENLATSLNTPMGKAPHEILSDREYQVMRLIALGKSVKEIAFDLSLSVKTISTYRTR 217 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 IM K KT + I YAV +V Sbjct: 218 IMEKMKFKTNADIIRYAVHERLV 240 >gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 204 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++G T+ E+A L +S+ TV NY+++ ++K + R+ A+ A Sbjct: 144 LTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIA 198 >gi|260222153|emb|CBA31434.1| hypothetical protein Csp_F37510 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 222 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A++F V + +LT E L + EG TS EIA+ L IS TV + ++ K Sbjct: 139 ASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENLRSKLG 198 Query: 230 TKTRSGAIAYAVR 242 + + AYA+R Sbjct: 199 IRNSAEMAAYAIR 211 >gi|256828832|ref|YP_003157560.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578008|gb|ACU89144.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 439 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 25/42 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LTG E+ + G TS EIAV LG+S T N Y ASI +K Sbjct: 373 LTGNEIRVADMVRSGMTSKEIAVALGLSVTTANFYRASIRKK 414 >gi|163739745|ref|ZP_02147153.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107] gi|163743097|ref|ZP_02150479.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161383514|gb|EDQ07901.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161386975|gb|EDQ11336.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107] Length = 214 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ ++A+ L IS TV + +I RK + +G YA+ + + Sbjct: 147 LTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103] gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis] gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103] gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355] Length = 249 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA I GIS +TV +I +++ K AI V ++ Sbjct: 181 FSSRENEVLYWASMGKTYSEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDL 240 Query: 246 V 246 + Sbjct: 241 I 241 >gi|126728912|ref|ZP_01744727.1| hypothetical protein SSE37_08793 [Sagittula stellata E-37] gi|126710842|gb|EBA09893.1| hypothetical protein SSE37_08793 [Sagittula stellata E-37] Length = 273 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ ECL W+++GKT +I I G++ +T+ +++ +T + AIA Sbjct: 204 LTPRQRECLQWVADGKTQADITQITGMAASTIERHLSRARDHLRVETTAQAIA 256 >gi|42780178|ref|NP_977425.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736096|gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 214 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 173 FKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +K ++H ++ LT +E+ L I+ G + +IA +GI+ TV Y+ +I K Sbjct: 137 YKRKEIHANVVEENNLTEKELFVLKAIARGNKNKDIAFDMGIAERTVKAYLTNIYNKLGV 196 Query: 231 KTRSGAIAYAVRNNIV 246 +RS A+A ++ ++ Sbjct: 197 NSRSEAVAVSIEKKLI 212 >gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 211 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+ ++EG ++ I+ L ++R TV +++A + K +R+ A+A A+ + Sbjct: 149 LTRRETEVLSLVAEGLSNQGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGV 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 215 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L RE E L +S+G EIA LGIS +TVN++I I K ++R+ A+A Sbjct: 157 LAEREREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVA 209 >gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1] gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1] Length = 146 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++EG ++ EIA +L +S +T+ +++++ K K R+ AI A Sbjct: 84 LSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKA 138 >gi|149927663|ref|ZP_01915916.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149823717|gb|EDM82945.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 236 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT REV+ + + EG T +++AV LGIS TV+N ++ I +K +T Sbjct: 168 LTPREVDVVRLLVEGHTIEQVAVSLGISGKTVSNNLSQIRQKLGVQT 214 >gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 223 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I G ++ EIA L I+ TV +++SI+ K R+ A A++ N+ Sbjct: 159 LTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHVSSILMKLNVNDRTQAAVLAIQENL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|328883875|emb|CCA57114.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 204 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREVECLTWIS 198 G+ PK + RL EI +L + N + + D D LT RE E L + + Sbjct: 100 GVRGFVPK--TVSAQRLAEI-ILTVHAGNRYVDPELAADAIAAGDSPLTAREAEVLEFSA 156 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +G EIA +S TV NY++S K + R A+ A Sbjct: 157 DGAPVAEIARRASLSPGTVRNYLSSAAAKLGAENRHAAVRLA 198 >gi|241764029|ref|ZP_04762068.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241366634|gb|EER61106.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 181 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 26/48 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELTGRE E + EG TS EI L IS TV Y A +MRK T Sbjct: 122 ELTGREREVAAKLLEGLTSKEIGKALEISHRTVEIYRARLMRKYNAST 169 >gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061] gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061] Length = 199 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE L +++GK + EIA L I TV NYI+ I+ K K R AI Sbjct: 138 LTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNRIEAI 189 >gi|182412471|ref|YP_001817537.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839685|gb|ACB73937.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 225 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ +E L +++G T+ E+A L +S NTV NY+ S+ K K RS A A V+ + Sbjct: 160 LSAQERRVLALVADGLTNKEVAEKLRLSDNTVKNYLVSVFEKLQVKRRSQAAAVYVQAS 218 >gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 211 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE+E L I+ GK+ IA +L IS +TV Y+ + K R GA A++ Sbjct: 146 EISLSQRELEVLRLIAHGKSKPVIAQLLEISADTVGTYVKRLYAKLGVSDRVGATVKALK 205 Query: 243 NNIV 246 ++ Sbjct: 206 LKLI 209 >gi|145595040|ref|YP_001159337.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145304377|gb|ABP54959.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 964 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++EG T+ E+ L IS T+ +++ I K +TR A A +RN Sbjct: 901 LTAREREVLAAVAEGLTNKEVGQRLFISERTIGVHVSHIFDKLQVRTRVQASAILLRN 958 >gi|111024873|ref|YP_707293.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110823852|gb|ABG99135.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 287 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G++ +LT RE++ L ++ G T+ EIA L + TV +Y+ + M K + +R A+ A Sbjct: 221 GREMQLTPREIDVLAHVALGCTNSEIAQRLSVGPQTVKSYLRAAMNKLSACSRQEAVVTA 280 >gi|186476322|ref|YP_001857792.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184192781|gb|ACC70746.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 181 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I IL IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRILDISSRTVDVYRARLMRKYGT 168 >gi|182435857|ref|YP_001823576.1| LuxR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464373|dbj|BAG18893.1| putative LuxR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 255 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +SEG + EIA S TV N + + + + R+ A+ YA+R+ + Sbjct: 195 LTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKNVLHEVATRLELRNRAHAVGYAMRHGL 254 Query: 246 V 246 + Sbjct: 255 I 255 >gi|192289348|ref|YP_001989953.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283097|gb|ACE99477.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 225 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211 >gi|146306594|ref|YP_001187059.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574795|gb|ABP84327.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 214 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V+ + LT R++E L I+ G+++ IA LG+S TV + A IM++ + Sbjct: 142 VNAHAEHGLTQRQLEILRLITRGESTRSIANGLGLSVKTVEAHRAQIMKRLQIHDVPSLV 201 Query: 238 AYAVRNNIV 246 YAVR I+ Sbjct: 202 LYAVREGII 210 >gi|330951723|gb|EGH51983.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 87 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 239 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT REVE ++ G + I+ L IS +TV NYI SI K A + R+ A+ A + Sbjct: 162 ELTPREVEVWRLMATGLDNTGISRTLDISLSTVKNYITSIFDKLAVRDRAQAVIVAYESG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|295690538|ref|YP_003594231.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432441|gb|ADG11613.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 137 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LTG+EV L ++ G+++ E+A LG+S NTV ++A++ K R+ AI A Sbjct: 72 RALGLTGQEVRVLERLAAGRSNKEMARDLGLSPNTVKTHVANLYGKLEVSRRTQAIGKA 130 >gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC 27126] Length = 214 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%) Query: 173 FKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 K +V + + FE LT +EVE L I+ G ++ EIA + S T+ N ++SIM K Sbjct: 138 LKGLNVEF-ESFENPEPLTEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKL 196 Query: 229 ATKTRSGAIAYAVRNNIV 246 + R+ A+ A+ ++ Sbjct: 197 GVRDRTRAVLKALEQGVI 214 >gi|254476945|ref|ZP_05090331.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11] gi|214031188|gb|EEB72023.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11] Length = 214 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ ++A+ L IS TV + +I RK + +G YA+ + + Sbjct: 147 LTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|167589242|ref|ZP_02381630.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 56 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + W +EGKT+ EI +ILG++ T+N +I+ + K ++ A+ AV Sbjct: 1 MRWAAEGKTAYEIGIILGLTERTINFHISRSIAKLDASNKTNAVVKAV 48 >gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032] gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032] Length = 199 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE L +++GK + EIA L I TV NYI+ I+ K K R AI Sbjct: 138 LTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNRIEAI 189 >gi|158520046|ref|YP_001527916.1| two component LuxR family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158508872|gb|ABW65839.1| two component transcriptional regulator, LuxR family [Desulfococcus oleovorans Hxd3] Length = 214 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L I+EG + +IA L IS TV Y +SIM+K + + +AVR Sbjct: 151 ELTERERQVLQMIAEGIKTKDIAESLHISVKTVETYRSSIMQKLGLFSVAELTKFAVREG 210 Query: 245 I 245 I Sbjct: 211 I 211 >gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194 IGL+ + G I L E G ++ AN + +H + ELT RE E L Sbjct: 125 IGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVREREAL 184 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238 W + GKT EI I+ + TV ++ + MRK A KT + A Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKA 230 >gi|145596350|ref|YP_001160647.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145305687|gb|ABP56269.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 268 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EGK++ EI L +S +TV + + RK + R+ A+A R + Sbjct: 207 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 266 Query: 246 V 246 V Sbjct: 267 V 267 >gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + +LT RE + L ++ G T+ EIA +G+ TV +++A+++ KT + R+ A+ Sbjct: 158 WAR--KLTEREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVIL 215 Query: 240 AVRNNIV 246 A + + Sbjct: 216 AYESGFI 222 >gi|291451544|ref|ZP_06590934.1| two-component system response regulator [Streptomyces albus J1074] gi|291354493|gb|EFE81395.1| two-component system response regulator [Streptomyces albus J1074] Length = 238 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ REVE + I+ G ++ +IA IS TV N+I I K RS AIA Sbjct: 172 LSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 224 >gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 255 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE++ L W + GKT EI I+ IS TV +I + RK R+ A+ Sbjct: 184 HLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAV 236 >gi|126732495|ref|ZP_01748294.1| autoinducer-binding transcriptional regulator, LuxR family protein [Sagittula stellata E-37] gi|126707134|gb|EBA06201.1| autoinducer-binding transcriptional regulator, LuxR family protein [Sagittula stellata E-37] Length = 253 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT +IA I+G+++ T+ ++ +T + A+A A +N Sbjct: 188 LTPRQREALEWVGDGKTMQDIAQIMGLTQATIEKHLRLARETLNVETTAQAVAKAAFHN 246 >gi|114320166|ref|YP_741849.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226560|gb|ABI56359.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 219 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G+++ IA LG+ TV ++ SI++K +R A +AV++ Sbjct: 157 ELTSRESEILRHIAKGQSNKMIARDLGLMEGTVKVHVKSILKKLRMHSRVEAAVWAVQHG 216 >gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae] Length = 921 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE + L I+EG+ + EIA L IS TV +I +I K +R+ A++ A+ Sbjct: 859 ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918 Query: 245 IV 246 ++ Sbjct: 919 LL 920 >gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 +W G +AAY +S +D++LT RE + L ++ G ++ +I L IS TV Sbjct: 127 VWWDGRVAAY----LRSGPEPERRDYQLTPRERQVLGLLANGLSNQQIGRQLFISVGTVQ 182 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I+RK + R+ A A++ ++ Sbjct: 183 VHVHTILRKLGARDRTQAAILALQEGLM 210 >gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE++ L +++G ++ E+A L +S TV +++S++RK + R A+ A Sbjct: 154 DLTERELDVLRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLA 209 >gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 168 YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + A + + D H G+ LTGRE E L ++ G ++ EIA L + TV ++++ Sbjct: 128 FPAAVRRLADHHGGRAPAPFPGLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSA 187 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R+ A+ A + V Sbjct: 188 VLAKLGARDRTQAVVLAYDSGFV 210 >gi|110680018|ref|YP_683025.1| transcription regulatory protein degU, putative [Roseobacter denitrificans OCh 114] gi|109456134|gb|ABG32339.1| transcription regulatory protein degU, putative [Roseobacter denitrificans OCh 114] Length = 216 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ ++A L IS TV + +I RK + +G YA+ + + Sbjct: 151 LTGREQTILLQLAQGKSNKDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 210 Query: 246 V 246 + Sbjct: 211 L 211 >gi|160878241|ref|YP_001557209.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426907|gb|ABX40470.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 212 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 173 FKSYDVHWGKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 F S +H F+ G RE++ + ++EG ++ EIA L IS TV N+I++I+ K Sbjct: 134 FTSRSIHTNTGFDPNGYTTRELDIIASVAEGLSNKEIAKKLFISEGTVKNHISTILEKGG 193 Query: 230 TKTRSGAIAY 239 R+ Y Sbjct: 194 FSHRTQLAVY 203 >gi|90994534|ref|YP_537024.1| hypothetical chloroplast protein 29 [Porphyra yezoensis] gi|122244619|sp|Q1XDE4|YCF29_PORYE RecName: Full=Probable transcriptional regulator ycf29 gi|90819098|dbj|BAE92467.1| unnamed protein product [Porphyra yezoensis] Length = 222 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 +I RD L E L + +N LT RE L + +G T+ EI+ IL Sbjct: 119 LIARDVLKEASLQNSATSNQ------QLNHKIRLTPREKSILDLVVDGLTNKEISTILNT 172 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYA 240 S V Y++ ++ KT K R+ + Y+ Sbjct: 173 SVRNVEKYVSRLLHKTNMKNRTLLVKYS 200 >gi|300788437|ref|YP_003768728.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797951|gb|ADJ48326.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE + L +G T ++A L +S TV N++++ + KT +TR+ A+ A Sbjct: 141 LTGRERDVLREAKDGSTVADVARALHLSEGTVRNHLSAAIGKTGARTRAEAVRVA 195 >gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG ++ EIA L +S TV +++ ++ K + R+ A+ A + Sbjct: 157 LTPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVSRVLAKLGARDRAQAVMLAYEFGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354] Length = 252 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI--ASI----MRKTATKTRSGAIAY 239 L+ REVECL W + GKT EI++I+ SR TV ++ ASI + ++ T ++ + Y Sbjct: 188 LSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNRSQTVFKAAQLGY 247 Query: 240 AVRNN 244 +NN Sbjct: 248 ISQNN 252 >gi|282866852|ref|ZP_06275887.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558300|gb|EFB63867.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 201 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LTGRE + L +EG T +IA L +S+ TV N+++S + KT +T Sbjct: 141 LTGREADVLRVAAEGGTVADIARALRLSQGTVRNHLSSAIGKTQART 187 >gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++G + IA LG+S TV N+++SI+ K R+ AI A R Sbjct: 156 QLTDREREVLVLVADGWPNHRIAHRLGLSAKTVANHVSSILAKLHAPDRAAAILQARRAG 215 Query: 245 I 245 + Sbjct: 216 L 216 >gi|167950425|ref|ZP_02537499.1| two component transcriptional regulator, LuxR family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 119 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE E + ++ GK + EIA LG+S TV + A +M K A ++ Sbjct: 54 LTPREHEVMEMVTTGKANKEIANALGVSAKTVEAHRARVMEKMAARS 100 >gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+ L +++G ++ EIA L I TV +++ I+ K R+ A+ AV+ Sbjct: 146 ELSERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRG 205 Query: 245 IV 246 IV Sbjct: 206 IV 207 >gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 207 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE+E L ++ G T+ E+A L IS TV +++S++ K + R+ A+A A Sbjct: 140 GESEPLTPRELEVLRLVARGLTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIA 199 >gi|319782058|ref|YP_004141534.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167946|gb|ADV11484.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 208 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG + IA L IS +T ++A+I+ K R+ AIA A+R + Sbjct: 146 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIATAMRQGL 205 Query: 246 V 246 V Sbjct: 206 V 206 >gi|326773122|ref|ZP_08232406.1| two-component system response regulator [Actinomyces viscosus C505] gi|326637754|gb|EGE38656.1| two-component system response regulator [Actinomyces viscosus C505] Length = 246 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 42/80 (52%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A A+ SY D LT RE+E L +++G ++ E+A L + T+ ++ +M+ Sbjct: 165 AGGASGHVSYAGPASVDVALTSRELEVLRLLAQGMSNSEMAAHLYVEPTTIKYHLTGLMQ 224 Query: 227 KTATKTRSGAIAYAVRNNIV 246 KT ++ R + + +R +V Sbjct: 225 KTGSRDRLQTVLWGIRAGLV 244 >gi|260597411|ref|YP_003209982.1| DNA-binding transcriptional regulator CsgD [Cronobacter turicensis z3032] gi|260216588|emb|CBA29849.1| Probable csgAB operon transcriptional regulatory protein [Cronobacter turicensis z3032] Length = 215 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+ +A Sbjct: 155 LTHREKEILNKLRFGASNMEIARSLFISENTVKTHLYNLFKKLAVKNRTQAVTWA 209 >gi|291298136|ref|YP_003509414.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567356|gb|ADD40321.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE+E + I+ G+T+ E+A L IS +TV ++++SI K + R A+A Sbjct: 150 DHRLSDRELEVVRAIAIGRTNQEVAAELFISLSTVKSHVSSIQAKLGARNRVAIAAWAWE 209 Query: 243 NNIV 246 + +V Sbjct: 210 HRVV 213 >gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 210 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205 >gi|319942246|ref|ZP_08016561.1| two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319804119|gb|EFW01019.1| two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 287 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L I G+ + +IA LGIS TV + ASIM KTA+ T + + V++ Sbjct: 155 KLTPREQQVLERIVNGRLNKQIADDLGISIKTVEAHRASIMDKTASGTVADLMRVVVKSE 214 Query: 245 I 245 + Sbjct: 215 L 215 >gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 219 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 168 YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + A + + D H G+ LTGRE E L ++ G ++ EIA L + TV ++++ Sbjct: 128 FPAAVRRLADHHGGRAPAPFPGLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSA 187 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R+ A+ A + V Sbjct: 188 VLAKLGARDRTQAVVLAYDSGFV 210 >gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ Sbjct: 168 LTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAV 219 >gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 168 YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 +Q + F +D + +L+ RE ECL W +EG T+ EIA L S TV ++ + Sbjct: 168 FQESAFPLFDASMLTCRHVKLSNRERECLAWSAEGLTAKEIARKLHRSVATVTLHLNTAA 227 Query: 226 RKTATKTRSGAIAYAV 241 +K R A+ A+ Sbjct: 228 KKLGATNRVQAVVRAL 243 >gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 207 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++ LT ++ G+++ EI L +S TV +++ I K K+R+ AIA A Sbjct: 145 LSPREIQVLTLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARA 199 >gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G T+ IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|37679701|ref|NP_934310.1| putative response regulator [Vibrio vulnificus YJ016] gi|320156547|ref|YP_004188926.1| putative response regulator [Vibrio vulnificus MO6-24/O] gi|37198446|dbj|BAC94281.1| putative response regulator [Vibrio vulnificus YJ016] gi|319931859|gb|ADV86723.1| putative response regulator [Vibrio vulnificus MO6-24/O] Length = 211 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 36/54 (66%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G +EL+G+E + ++ +G ++ EI+ L +S +TV ++++ I+ KT ++RS Sbjct: 150 GSKYELSGKEQKVFLYLLQGYSNKEISEQLNVSLSTVKSHVSHILCKTGKQSRS 203 >gi|119715235|ref|YP_922200.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119535896|gb|ABL80513.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 218 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT +E L I +G T+ +IA L ++ TV NY++S++ K ++R+ A +A ++ Sbjct: 157 QLTAQEQRILELIGQGMTNRQIAAHLCLAEKTVKNYVSSMLAKLGLESRTQAAIFATKH 215 >gi|253989299|ref|YP_003040655.1| nitrate/nitrite response regulator protein narp [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780749|emb|CAQ83911.1| nitrate/nitrite response regulator protein narp [Photorhabdus asymbiotica] Length = 211 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G+ + +++++ + AN K H ELT RE++ L +S G T+ E+A Sbjct: 121 ARGQTVFSEKIYQ------HLANRHK----HVDPLSELTKRELDVLKEVSSGMTNKEVAD 170 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGA 236 +L IS TV +I ++++K ++R A Sbjct: 171 VLFISEETVKVHIRNLLKKLNVRSRLAA 198 >gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 219 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++G T+ +IA L IS TV N++ S +RK R YA+ + Sbjct: 153 QLTDRETEVLRLVAKGLTARQIATRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHG 212 Query: 245 I 245 + Sbjct: 213 L 213 >gi|171914538|ref|ZP_02930008.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 236 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-----TATKTRSGAIAYA 240 L+ RE E L I+EGK + E A IL IS TV + S+M K TA+ TR AIA Sbjct: 157 LSSRETEVLQLIAEGKANKETAEILHISVKTVEKHRQSLMEKLNIHDTASLTRH-AIATG 215 Query: 241 V 241 + Sbjct: 216 I 216 >gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu] Length = 275 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 29/50 (58%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 G + LT E L W +GKTS E+A IL +S TVN ++ +I+ K T Sbjct: 209 GNEIHLTEMEKTILRWTVDGKTSGELATILEVSVRTVNFHVQNILMKMNT 258 >gi|170725009|ref|YP_001759035.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810356|gb|ACA84940.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 221 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE ++ +S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTSRERTIISLVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N++ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|37526610|ref|NP_929954.1| nitrate/nitrite response regulator protein NarP [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786042|emb|CAE15094.1| Nitrate/nitrite response regulator protein NarP [Photorhabdus luminescens subsp. laumondii TTO1] Length = 211 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G+ + +++++ + AN K H ELT RE++ L +S G T+ E+A Sbjct: 121 ARGQTVFSEKIYQ------HLANRHK----HVDPLSELTKRELDVLKEVSSGMTNKEVAD 170 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGA 236 +L IS TV +I ++++K ++R A Sbjct: 171 VLFISEETVKVHIRNLLKKLNVRSRLAA 198 >gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++T RE E L I E T+ EIA L IS TV+ + +++ K + K +G + YA++ Sbjct: 154 DITSREKEILQLICEEYTTSEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQ 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|238061024|ref|ZP_04605733.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882835|gb|EEP71663.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 268 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EGK++ EI L +S +TV + + RK + R+ A+A R + Sbjct: 207 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 266 Query: 246 V 246 V Sbjct: 267 V 267 >gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 235 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + G+++ EIAV G+S +TV N++ +I++K R YA + Sbjct: 173 LTAREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLTRYAYEQGM 232 Query: 246 V 246 + Sbjct: 233 L 233 >gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 219 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 158 LTERETEILRYVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|86131430|ref|ZP_01050028.1| two-component system response regulator, LuxR family [Dokdonia donghaensis MED134] gi|85817875|gb|EAQ39043.1| two-component system response regulator, LuxR family [Dokdonia donghaensis MED134] Length = 209 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREVECLTWISEG 200 LL + +L + L E+ + Y N + KS D +D EL RE+E + Sbjct: 104 LLKDTEKKVLENALNELIINGYYHTNTVSQLLVKSLDGD-NRD-ELRDREIEFIKHACTE 161 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T +EIA ++ +S TV Y S+ K K R+G + YA++N + Sbjct: 162 MTYNEIASVMFLSPKTVQGYRDSVFSKLNLKNRTGLVIYALKNGL 206 >gi|320095298|ref|ZP_08026990.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977771|gb|EFW09422.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 222 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L +S G T +IA + +S+ TV N+++S M KT +TR+ A+ A + Sbjct: 162 LTERESDVLRAVSTGGTIADIAREMRLSQGTVRNHVSSAMLKTEARTRAEAVRIATESG 220 >gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus thermophilus ND03] Length = 200 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +++G T+ EIA L +S T+ NY+ +I+ K R+ A+ A Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTIRNYMTAILTKLDAGNRTDAVRIA 193 >gi|229542625|ref|ZP_04431685.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327045|gb|EEN92720.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 218 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + T RE E ++ I++G ++ EIA L IS TV NYI SI KT + R+ Y Sbjct: 151 KFTEREREIMSLIAKGFSNKEIAKTLYISEGTVANYITSIFGKTGLEHRTQIAVY 205 >gi|170738992|ref|YP_001767647.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193266|gb|ACA15213.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 217 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGR++ L ++EG++ + A L +S TV+N +A I + R G + +A+R+ Sbjct: 147 LTGRQLRILRLMAEGRSQRQAAEALLVSAKTVSNEVAVIRERVRAGDRPGLVRFALRHR 205 >gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 230 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++ L +++G T+ EIA L +SR TV ++ +I RK A +R+ A++ A Sbjct: 169 LSTRELQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 223 >gi|85858285|ref|YP_460487.1| GerE family transcriptional regulator [Syntrophus aciditrophicus SB] gi|85721376|gb|ABC76319.1| transcriptional regulator GerE family [Syntrophus aciditrophicus SB] Length = 586 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E++ I EG TS EIA +L IS+ ++ Y I +K K + + +RN Sbjct: 527 LTAKEIQIAALIKEGMTSKEIAELLNISKREIDFYRGKIRKKMGLKNKKFNLQLLLRN 584 >gi|88801325|ref|ZP_01116853.1| putative nitrate/nitrite DNA-binding response regulator [Polaribacter irgensii 23-P] gi|88781983|gb|EAR13160.1| putative nitrate/nitrite DNA-binding response regulator [Polaribacter irgensii 23-P] Length = 221 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L +S+ ++ EIA + IS +TV +Y ++RK K G YAV+ N+ Sbjct: 161 LTEREKNVLRLVSKELSTSEIAEKMNISHHTVESYRKKLLRKLNVKNSVGLAIYAVKYNL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|330821298|ref|YP_004350160.1| PAS/PAC domain protein [Burkholderia gladioli BSR3] gi|327373293|gb|AEA64648.1| PAS/PAC domain protein [Burkholderia gladioli BSR3] Length = 541 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + G EIA LG++ NTV N++++I K +R AI +A Sbjct: 439 DLTARERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVSTIYNKLDVHSRGEAIVWARERG 498 Query: 245 IV 246 IV Sbjct: 499 IV 500 >gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78] gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A +A + + Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVFAYESGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|256376371|ref|YP_003100031.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920674|gb|ACU36185.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 956 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+GRE E +SEG T+ EIA L +S TV ++A + K ++R G + Sbjct: 898 LSGREREVARLVSEGLTNREIAERLSLSAKTVEAHLARVFTKLGVRSRVGVV 949 >gi|111017509|ref|YP_700481.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110817039|gb|ABG92323.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 430 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L ++ GK + IA LGIS++T+ ++AS++ K R A A +R I Sbjct: 359 LNPRELEVLAHLAVGKRNRAIAEELGISQSTIKFHVASVLEKLDVANRGEAGAIGIRAGI 418 Query: 246 V 246 Sbjct: 419 A 419 >gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 231 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E L I+EG T+ +IA + ++ TV NY++S++ K ++R+ A +A R N Sbjct: 172 LTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLGLESRTQAAVFATRLN 230 >gi|27366033|ref|NP_761561.1| putative response regulator [Vibrio vulnificus CMCP6] gi|27362233|gb|AAO11088.1| Putative response regulator [Vibrio vulnificus CMCP6] Length = 211 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 36/54 (66%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G +EL+G+E + ++ +G ++ EI+ L +S +TV ++++ I+ KT ++RS Sbjct: 150 GSKYELSGKEQKVFLYLLQGYSNKEISEQLNVSLSTVKSHVSHILCKTGKQSRS 203 >gi|87123676|ref|ZP_01079526.1| possible DNA-binding response regulator [Synechococcus sp. RS9917] gi|86168245|gb|EAQ69502.1| possible DNA-binding response regulator [Synechococcus sp. RS9917] Length = 261 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G EL+ RE + L + G ++ EIA L +S +TV ++++S++RK R+ A+ A Sbjct: 180 GPLAELSLREEDVLRGLCRGMSNQEIADALVVSIDTVKSHVSSLLRKLPANDRTHAVVVA 239 Query: 241 VRNNIV 246 R +V Sbjct: 240 FREGLV 245 >gi|328880804|emb|CCA54043.1| hypothetical protein SVEN_0756 [Streptomyces venezuelae ATCC 10712] Length = 1065 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 LT RE E ++EG T+ +A L +S TV +++A + RKT +TR+G Sbjct: 977 LTPREREISVLVAEGLTNQAVAERLCLSPRTVESHVARVYRKTGVETRAG 1026 >gi|262198719|ref|YP_003269928.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082066|gb|ACY18035.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 373 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT RE + WI +GK + +IA ILGI TV + I K + R+ Sbjct: 301 YPLTAREAQVAWWICQGKNNPDIATILGIRPATVKKHTERIYFKLGVENRT 351 >gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + +W + A +N+ S DV L+ RE + L W +EGKT+ E+AVIL +S Sbjct: 147 EMIWFCQFVHATMSNLIVS-DVMPSGAMRLSLREKQVLHWTAEGKTAAEVAVILQLSERN 205 Query: 217 VNNYIASIMRKTATKTRSGAIAYAV 241 V +I + + K ++ A A Sbjct: 206 VGFHIQNAIDKLDAANKTHATVKAA 230 >gi|82775346|ref|NP_835013.2| two-component response regulator YocG [Bacillus cereus ATCC 14579] Length = 163 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 28/46 (60%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ Sbjct: 115 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVL 160 >gi|56696391|ref|YP_166748.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678128|gb|AAV94794.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 234 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT ++ L + EGK + +IA L I+ TV ++ +IMRK ++R+ A+ A + + Sbjct: 164 LTNQQARILQLVCEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKKTS 222 >gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium] Length = 223 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT RE E L+ I++G ++ EIA L ++ T +++ I+ K + R+ A +A Sbjct: 153 GRIGELTERETEVLSLIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLRDRTQAAVFA 212 Query: 241 VRNNIV 246 +V Sbjct: 213 YETGLV 218 >gi|302869871|ref|YP_003838508.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|315501333|ref|YP_004080220.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302572730|gb|ADL48932.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|315407952|gb|ADU06069.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 272 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EGK++ EI L +S +TV + + RK + R+ A+A R + Sbjct: 211 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 270 Query: 246 V 246 V Sbjct: 271 V 271 >gi|159045105|ref|YP_001533899.1| response regulator protein [Dinoroseobacter shibae DFL 12] gi|157912865|gb|ABV94298.1| response regulator protein [Dinoroseobacter shibae DFL 12] Length = 213 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I GK + IA LGI +TV N++ S++ K + R A A R Sbjct: 152 MQLTRREREILDLIERGKPNKVIACTLGIEVSTVKNHVHSLLGKLGVRRRGEAAALHRRR 211 Query: 244 N 244 + Sbjct: 212 S 212 >gi|239979679|ref|ZP_04702203.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 281 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ REVE + I+ G ++ +IA IS TV N+I I K RS AIA Sbjct: 215 LSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 267 >gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica] Length = 249 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 29/56 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W S GKT EIA I GIS +TV ++ +I+ K AI V Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGV 236 >gi|296160955|ref|ZP_06843767.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295888844|gb|EFG68650.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 216 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ G+T EIAV L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVLKRIAAGQTITEIAVELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|294142434|ref|YP_003558412.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328903|dbj|BAJ03634.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 221 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTNRERTIIKLVSSGARNKEIAHQLCISEHTVKAHISSIFRKTQSRNR 203 >gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica] Length = 249 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE E L W S GKT EIA I GIS +TV ++ +I+ K AI V Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVE 237 >gi|15890276|ref|NP_355948.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15158472|gb|AAK88733.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 492 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L+ I +G + E++ L +S++T+ N+IAS+ K R+ A+ +A Sbjct: 426 DLTDREEQILSLICDGSSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWA 481 >gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 258 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G T+ IA L S TVN ++ S RK + R A+ Sbjct: 196 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAV 247 >gi|51891164|ref|YP_073855.1| two-component response regulator variant [Symbiobacterium thermophilum IAM 14863] gi|51854853|dbj|BAD39011.1| two-component response regulator variant [Symbiobacterium thermophilum IAM 14863] Length = 78 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 30/57 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE E + +G TS IA L IS T + + ASIMRK T + YAV Sbjct: 8 ELTPREQEVFRLLVDGYTSKAIARALYISPKTADKHRASIMRKLEVNTFPELVRYAV 64 >gi|302559828|ref|ZP_07312170.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477446|gb|EFL40539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 200 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S + K + R Sbjct: 129 AADAIAAGDSPLTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVTKLGAENRH 188 Query: 235 GAIAYA 240 A+ A Sbjct: 189 AAVRLA 194 >gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 241 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE ECL W ++GK++ EI +L ISR T ++ + K +T A+A Sbjct: 179 LSPREFECLEWAAQGKSAWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVA 231 >gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] Length = 249 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 29/56 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W S GKT EIA I GIS +TV ++ +I+ K AI V Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGV 236 >gi|268609438|ref|ZP_06143165.1| two component LuxR family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 209 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 34/51 (66%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + ++ +E E L ++EGK++ EI+ L +S TV NYI+S++ K + + R+ Sbjct: 146 YGISDKEKEILELVAEGKSNKEISSELFLSEGTVRNYISSLLDKLSLRDRT 196 >gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica] Length = 249 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 29/56 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W S GKT EIA I GIS +TV ++ +I+ K AI V Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGV 236 >gi|269954857|ref|YP_003324646.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303538|gb|ACZ29088.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 80 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE L+ ++E T ++IA L ++RNTV + + S+ RK TR+ A+A+A Sbjct: 18 LTRREQVVLSNLTEDVTLEQIATKLFVTRNTVKSQVRSVYRKIGVSTRADAVAWA 72 >gi|297203955|ref|ZP_06921352.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197713149|gb|EDY57183.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 894 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ RE + L +++ +++EIAV L +S NTV ++ S+ RK A RS A+ A Sbjct: 833 ELSERERDVLQRLAQMMSTEEIAVDLYLSVNTVKTHLKSLYRKLAVNRRSEAVHRA 888 >gi|148555723|ref|YP_001263305.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148500913|gb|ABQ69167.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 146 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + +T RE+ L ++ G+++ EIA+ L +S NTV ++A + K R+ A+A A Sbjct: 81 ESLGITPRELAVLRELAAGRSNKEIAIRLAVSPNTVKTHVARLFEKLGAARRTDALARA 139 >gi|86132592|ref|ZP_01051185.1| two-component system response regulator, LuxR family [Dokdonia donghaensis MED134] gi|85816834|gb|EAQ38019.1| two-component system response regulator, LuxR family [Dokdonia donghaensis MED134] Length = 212 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 7/111 (6%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + T DV RI I + KG I L + L + L+ A +Y K +L+ R Sbjct: 101 YVAKTADVERI-INAITQVQKGGIYLNEALSQ-RLVNDGNATQGLAY-----KYKKLSSR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E+E L +S GK + EIA L I+ TV+ Y +++K + + I +A Sbjct: 154 EIEVLNLLSNGKRNKEIAADLDINEKTVSTYKMRLLKKLEAQNVAELIKHA 204 >gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] Length = 224 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W + GK+ +I IL IS TV ++ S +K T AI A+ + Sbjct: 161 LSTREIEILQWTAAGKSQQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGL 220 Query: 246 V 246 + Sbjct: 221 I 221 >gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 223 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ +IA L +S TV +++ + +RK RS + YA+ + Sbjct: 162 LTERETEVLRLVAKGMTARQIAAKLVVSHRTVESHVQNTLRKLQLHNRSQLVRYAIEQGL 221 >gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 261 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE ECL ++G+++ E + ++ S TV ++ + +RK + RS A+A AVR + Sbjct: 201 LSARERECLDHAAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAEAVRRGL 260 Query: 246 V 246 + Sbjct: 261 I 261 >gi|319794441|ref|YP_004156081.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596904|gb|ADU37970.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 504 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L IS+G+ + E+A LGIS TV ++ + K TR+ A A + Sbjct: 444 LSERELEVLRCISKGENTKEVARALGISPRTVRTHVERVFLKLECSTRAAATLKAATRGL 503 Query: 246 V 246 + Sbjct: 504 I 504 >gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074] gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074] gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074] Length = 228 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT RE E L I++G ++ EIA L ++ +TV +++ I+ K + + R+ A +A Sbjct: 155 GQYGELTERETEVLVQIAQGLSNAEIADRLFVAESTVKTHVSRILVKLSLRDRTQAAVFA 214 Query: 241 VRNNIV 246 +V Sbjct: 215 YEAGLV 220 >gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] Length = 211 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L I +G ++ IA L I+ TV ++++I K + R+ A YAV ++ Sbjct: 148 ELTNRELDVLRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDRTQAAIYAVHHH 207 Query: 245 I 245 + Sbjct: 208 L 208 >gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] Length = 224 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 11/101 (10%) Query: 157 DRLWEI---GLLAAYQANMFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDE 205 +R W++ G++ QA +D+ D L+ RE+E L W + GK+ + Sbjct: 121 EREWQLLISGIIGNLQAAAVHMHDMVIQSDPLTRMLNTPSLSTREIEILQWTAAGKSQQD 180 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I IL IS TV ++ S +K T AI A+ ++ Sbjct: 181 IGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221 >gi|149203303|ref|ZP_01880273.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143136|gb|EDM31175.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 240 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT ++ L I EG+ + +IA L I+ TV ++ +IMRK +TR+ A+ A Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227 >gi|94310097|ref|YP_583307.1| LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353949|gb|ABF08038.1| transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 181 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE + + EGKTS +I +L IS TV+ Y A +M+K T Sbjct: 123 ELTARERDIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAHT 170 >gi|300782196|ref|YP_003762487.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299791710|gb|ADJ42085.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 969 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G EL+ RE E ++EG+T+ EIA L +S TV ++A ++RK ++R+ Sbjct: 900 GYGSELSPREREVARMLAEGRTNREIADGLFLSPRTVEQHVAKVLRKLGARSRT 953 >gi|282859564|ref|ZP_06268669.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] gi|282587792|gb|EFB92992.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] Length = 200 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I +G + EIA L IS TV + +IM K K+ S YAV + Sbjct: 135 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 194 Query: 246 V 246 V Sbjct: 195 V 195 >gi|302867979|ref|YP_003836616.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302570838|gb|ADL47040.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 979 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++EG T+ EI L IS T+ +++ I K +TR A A +RN Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRN 976 >gi|209546605|ref|YP_002278523.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537849|gb|ACI57783.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I G+++ EIA +LGIS T + ++ +K T +G I YA+ + I Sbjct: 150 LTPREHDILGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIRYALDHGI 209 >gi|218528441|ref|YP_002419257.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520744|gb|ACK81329.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 486 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I G D IA L +SRNTV N+ A++ RK R+ A+ + N Sbjct: 420 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478 >gi|167646647|ref|YP_001684310.1| two component LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167349077|gb|ABZ71812.1| two component transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 222 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ + ++E +++ IA +L IS TV ++ +IMRK + + + YA+RN + Sbjct: 160 LTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIMRKLGAHSLADIVRYAIRNKL 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 194 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L +++G ++ EIA LG+S +TV +++A + K R+ A++ A Sbjct: 133 LTPRESEVLPLLAQGYSNKEIAKNLGVSPDTVKDHLARLYAKLDAGDRTEAVSRA 187 >gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 228 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L + G+T+ EIA L IS TV ++A+I K +R+ A+ Y ++ Sbjct: 162 LSPRELEVLRIAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIK 218 >gi|307945008|ref|ZP_07660345.1| putative two component LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307771932|gb|EFO31156.1| putative two component LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 256 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + +F L+ RE+E L +++G +S +IA I+ IS TV + A+I RKT Sbjct: 187 FDNEFGLSQRELEVLHLVAKGLSSKQIAPIVNISARTVEAHRANIKRKT 235 >gi|315505622|ref|YP_004084509.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412241|gb|ADU10358.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 979 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++EG T+ EI L IS T+ +++ I K +TR A A +RN Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRN 976 >gi|269862236|ref|XP_002650758.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348] gi|220065658|gb|EED43295.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348] Length = 119 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ + L ++ GKT+ EIA LGIS TV +++++++ TR+ A A Sbjct: 50 LTARQRQVLGLVAAGKTNKEIAKQLGISPFTVRIHVSTLLKSLGVPTRAAAAA 102 >gi|213584966|ref|ZP_03366792.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 49 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 1 AEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 49 >gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ TV +I I+ K + R+ A+ +A + Sbjct: 141 ELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESG 200 Query: 245 IV 246 +V Sbjct: 201 LV 202 >gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT R+ E L I+EGK++ E+A +L +S TV + +M + G + YA+R Sbjct: 152 QLTPRQREILQLIAEGKSTKEMAFLLNLSVKTVETHRTQLMDRLGIHDVPGLVRYAMRMG 211 Query: 245 IV 246 ++ Sbjct: 212 LI 213 >gi|113955465|ref|YP_731403.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113882816|gb|ABI47774.1| possible DNA-binding response regulator [Synechococcus sp. CC9311] Length = 243 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT +E + L + G ++ EIA L +S +TV ++IAS++RK R+ A+ A + Sbjct: 169 ELTLKEEDVLRGLCRGMSNQEIADSLVVSIDTVKSHIASLLRKLQANNRTHAVVVAFQQG 228 Query: 245 IV 246 ++ Sbjct: 229 LI 230 >gi|330981978|gb|EGH80081.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQA 229 >gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++G + EIA L IS TV + +++M K KTR I YA++ + Sbjct: 154 LSDREKEVLGLTAKGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGL 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ RE++ L I++G+++ EIA L IS TV ++++I+ K R+ A +A Sbjct: 155 ELSERELDVLRLIADGRSNAEIASRLSISEKTVKGHVSNILSKLYLLDRTQAAVFA 210 >gi|170756196|ref|YP_001781032.1| LuxR family DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121408|gb|ACA45244.1| DNA-binding response regulator, LuxR family [Clostridium botulinum B1 str. Okra] Length = 217 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTEREINIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NIV 246 NIV Sbjct: 214 NIV 216 >gi|149370505|ref|ZP_01890194.1| two-component response regulator [unidentified eubacterium SCB49] gi|149356056|gb|EDM44613.1| two-component response regulator [unidentified eubacterium SCB49] Length = 214 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE ++ I+E T+ EIA L +S++T+ +Y +++ K + +G YA++ Sbjct: 152 LTKREVEVISLIAEEFTTQEIADQLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGY 211 Query: 246 V 246 V Sbjct: 212 V 212 >gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia] gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194 IGL+ + G I L E G ++ AN + +H + ELT RE E L Sbjct: 125 IGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVREREAL 184 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238 W + GKT EI I+ + TV ++ + MRK A KT + A Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKA 230 >gi|85703813|ref|ZP_01034916.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. 217] gi|85671133|gb|EAQ25991.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. 217] Length = 240 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT ++ L I EG+ + +IA L I+ TV ++ +IMRK +TR+ A+ A Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227 >gi|329936313|ref|ZP_08286078.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304109|gb|EGG47990.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 39/73 (53%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S H +LT RE L I+EG ++ IA GIS + V ++A+++ K R Sbjct: 157 RSRGTHRSPRVQLTPREQAVLGLIAEGLSNRMIAHRFGISEHGVKRHVANLLAKFNCSNR 216 Query: 234 SGAIAYAVRNNIV 246 + A++ A++ ++ Sbjct: 217 AQAVSVALQQGLL 229 >gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032] gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter turicensis z3032] Length = 210 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LTGRE++ L ++ G ++ +IA L IS TV +I +++RK ++R A Sbjct: 150 LTGRELDVLQEVARGLSNKQIAATLHISEETVKVHIRNLLRKLNVRSRVAA 200 >gi|254559044|ref|YP_003066139.1| LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266322|emb|CAX22086.1| putative transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 486 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I G D IA L +SRNTV N+ A++ RK R+ A+ + N Sbjct: 420 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478 >gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 272 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G T+ IA L S TVN ++ S RK + R A+ Sbjct: 210 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAV 261 >gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] Length = 227 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ G ++ EIA L IS TV ++ ++ KT ++ R + +A ++++ Sbjct: 157 LTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHVVLFAFKHHL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|240137035|ref|YP_002961504.1| putative transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|240007001|gb|ACS38227.1| putative transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] Length = 486 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I G D IA L +SRNTV N+ A++ RK R+ A+ + N Sbjct: 420 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478 >gi|271965229|ref|YP_003339425.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508404|gb|ACZ86682.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 245 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+ ++EG ++ +IA LGIS + ++A+I+ K R+ A A A+ + Sbjct: 176 LTTRERETLSLMAEGLSNKQIARRLGISEHGAKRHVANILAKLNCSNRTLATAVALNRGL 235 Query: 246 V 246 + Sbjct: 236 L 236 >gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K+ +L+ RE E L +S+G T+ EIA L +S NTV ++ I K ++R+ A+ Sbjct: 147 KNEKLSQREEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQHIYEKLHVRSRTEAV 202 >gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 10/87 (11%) Query: 170 ANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 A+M + Y V G LT RE+E L W KT+ EI IL ++ TV Sbjct: 151 ASMLRDYAVTSGSSLFLHNSSSTAPHLTPRELEILHWAWAEKTTWEIGKILSLAEPTVEF 210 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 + +I RK +R A+A A++ +++ Sbjct: 211 HFKNIRRKLNVSSRRLAVARAIQLDLM 237 >gi|126732485|ref|ZP_01748284.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] gi|126707124|gb|EBA06191.1| DNA-binding response regulator, LuxR family protein [Sagittula stellata E-37] Length = 235 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT ++ L I EGK + +IA L I+ TV ++ +IMRK +R+ A+ A Sbjct: 160 LTNQQARILHLICEGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVHSRTQAVLVA 214 >gi|2564978|gb|AAB82054.1| hypothetical protein [Rhodobacter capsulatus] Length = 250 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ E L W+ +GKTS +IA ILG++ TV ++ Sbjct: 184 LTARQREVLEWVGDGKTSADIAQILGLTTATVEKHL 219 >gi|312885328|ref|ZP_07744994.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311302193|gb|EFQ79196.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 251 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L I +GK S EIA +L IS NTVN + +I+ K Sbjct: 191 LSTRECEVLRLIDQGKLSKEIADLLSISINTVNRHRQNILEK 232 >gi|302035957|ref|YP_003796279.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604021|emb|CBK40353.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 226 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ +E L ++EG+T+ EIAV L +S TV NYI+++ K RS Sbjct: 156 DLSPQERRLLPLVAEGRTNKEIAVALSLSDKTVKNYISNMYSKLGVTRRS 205 >gi|282861615|ref|ZP_06270679.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563431|gb|EFB68969.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 236 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++EG + EIA S TV N + + + + R+ A+ YA+RN + Sbjct: 176 LTTREADMLRLVAEGFDTAEIAQKTSYSERTVKNVLHEVATRLHLRNRAHAVGYALRNGL 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|224283771|ref|ZP_03647093.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] Length = 277 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +L+A+Q G+D EL +GRE E + I+ G T E+A L IS TV + Sbjct: 192 VLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 251 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +++++RK R+ +A IV Sbjct: 252 MSNVLRKLQLSNRTELTRWAADRRIV 277 >gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 210 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+ L + +G+ + EIA L +S TV NY+ I+ K + R A ++ +N Sbjct: 151 LSKREIGVLKLVGQGRNNQEIAQELHLSEGTVKNYVTQILNKLEMRDRIQAALWSQQN 208 >gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 204 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L ++G T+ E+A L +S TV NY+++ ++K A + R+ A+ Sbjct: 144 LTDREREVLRAAADGSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAV 195 >gi|225025132|ref|ZP_03714324.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC 23834] gi|224942093|gb|EEG23302.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC 23834] Length = 224 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA + ++ +TV ++ +I+RK +R A YAV++N+ Sbjct: 155 LTSRELEVLRYLAVGYSNKIIAKRMDLAESTVKVHVQNILRKLELGSRVQAAVYAVQHNL 214 >gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I++GK + EIA G+S TV N SIM+K + + YAVR + Sbjct: 153 LSLREREILQLIADGKNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212 >gi|86359865|ref|YP_471756.1| conjugal transfer transcriptional regulator protein [Rhizobium etli CFN 42] gi|28453858|gb|AAO43545.1| transcriptional activator protein TraR [Rhizobium etli CFN 42] gi|86283967|gb|ABC93029.1| conjugal transfer transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 239 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE+ CL W ++GKT+ E A++ GI+ TV +Y+ K Sbjct: 179 LSPREMTCLLWATKGKTAPETAMLTGINARTVQHYLDKAREK 220 >gi|73540963|ref|YP_295483.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118376|gb|AAZ60639.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 181 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE + + EGKTS +I +L IS TV+ Y A +M+K T Sbjct: 123 ELTARERDIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAST 170 >gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE E + + +G+ + EIA L +S TV NYI+ + K + R+ +AV+++I Sbjct: 151 LAEREKEIIRLVGQGRNNAEIAAELYLSVGTVKNYISQLFIKLGVRDRTQLAIFAVKHDI 210 >gi|332662977|ref|YP_004445765.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331791|gb|AEE48892.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 231 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 165 LAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +A A F+ ++ DF LT RE+E L ++ GK EIA + IS V++++ Sbjct: 148 IAGKVARFFQEKELKADPDFCNLTARELEVLKYLVNGKRYQEIANAMFISYEGVHSHVKK 207 Query: 224 IMRKTATKTRSGAIAYAV 241 + K ++S AI A+ Sbjct: 208 VYEKLHVNSKSEAIIKAI 225 >gi|302339532|ref|YP_003804738.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301636717|gb|ADK82144.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 521 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++ L+GRE E + +GKT+ EI+ L IS +T +I+ I +K TRS Sbjct: 453 RELGLSGREQEIALLMLQGKTNKEISDTLFISMSTTKTHISRIFKKATVSTRS 505 >gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis NIES-39] Length = 105 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 41/66 (62%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT+T R Sbjct: 3 DSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVEL 62 Query: 237 IAYAVR 242 + ++++ Sbjct: 63 VRWSLQ 68 >gi|158315599|ref|YP_001508107.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111004|gb|ABW13201.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 268 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L +SEG + EI L S TV N + + R+ + RS A+AYA R+ + Sbjct: 208 LSERELTVLRLVSEGLDTREIGRRLCYSERTVKNVLQDVTRRFGLRNRSHAVAYAFRHGL 267 Query: 246 V 246 + Sbjct: 268 L 268 >gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A M KS + +E LT RE E L +++G T EIA L IS TV + A++M Sbjct: 133 AIEAYMEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMM 192 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK + ++ + YA++ I+ Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213 >gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 89 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 39/57 (68%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L ++ G T+ E++ L IS+ TV+N++++I+ KT T+ R + +A++ Sbjct: 12 LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQ 68 >gi|315647681|ref|ZP_07900782.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276327|gb|EFU39670.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 201 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L EG T+ EI+ L ++ TV NY++S ++K +R A A A Sbjct: 141 LSEREIEMLRLTKEGMTTGEISKALFLTTGTVRNYLSSAIQKLEADSRQQAAAIA 195 >gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 237 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ E+A L +S TV ++A IM K + R+ A+ A + Sbjct: 166 LTPREVEVLQLLATGLSNAELAARLVLSEATVKTHVARIMAKLGLRDRAQAVVVAYETGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 237 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ G ++ EIA L ++ +TV N ++ + K K R+ A YA+ + + Sbjct: 173 LTEREIQLLRLVASGMSNKEIAAELSLAESTVKNRLSLLFEKLDVKDRTQAAIYALSHGL 232 Query: 246 V 246 + Sbjct: 233 I 233 >gi|213691342|ref|YP_002321928.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522803|gb|ACJ51550.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457415|dbj|BAJ68036.1| putative two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 245 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K+ D W L+ REVE L SEG ++EIA L +S+ T+ Y+ + K + R Sbjct: 173 KASDKRWMNGDRLSAREVEILRMYSEGLETEEIARSLSLSKFTIGTYVKRAVAKLHARNR 232 Query: 234 SGAI 237 AI Sbjct: 233 IHAI 236 >gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 217 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L+ ++G + E+A +L IS TV + +++M K K+R I YA++ + Sbjct: 154 LSEREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSNVMEKLGLKSRPELIKYAMKKGL 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|326330233|ref|ZP_08196544.1| response regulator, two-component system [Nocardioidaceae bacterium Broad-1] gi|325952046|gb|EGD44075.1| response regulator, two-component system [Nocardioidaceae bacterium Broad-1] Length = 218 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L ++ G+T+ EI+ L +S +TV ++AS+M K T+ R Sbjct: 155 LTEREEQVLALVARGRTNAEISTELFVSLSTVKTHVASLMTKLGTRNR 202 >gi|320353750|ref|YP_004195089.1| LuxR family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122252|gb|ADW17798.1| two component transcriptional regulator, LuxR family [Desulfobulbus propionicus DSM 2032] Length = 212 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Query: 155 LRDRLWEIGLLAA----YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 L+ R + LLA YQ N + G LT R+ E L I+EG + E A +L Sbjct: 119 LKGRTYITPLLAGELLNYQRN--RPSGDQEGGVARLTARQREVLQLIAEGLSVKEAAAVL 176 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 GIS TV + S+M K+ + + +AV + I Sbjct: 177 GISSRTVEFHKYSMMEILGLKSSAELMRFAVEHGI 211 >gi|312196962|ref|YP_004017023.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228298|gb|ADP81153.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 644 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F LT RE E LT ++EG T+ ++A L IS T N ++++I K R+ Sbjct: 581 FSLTAREQEVLTLLAEGLTNAQLAAELFISERTANRHVSNIYTKLGVHNRT 631 >gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 163 GLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 GL+A + A S D G + LTGRE E L ++ G ++DEIA L +S TV Sbjct: 135 GLIARFLAQPDDSADGDRGAARSERLATLTGREREVLVQVAGGLSNDEIAERLEVSPLTV 194 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ M K + R+ + +A + +V Sbjct: 195 KTHVNRGMAKLGARDRAQLVVFAYESGLV 223 >gi|260433688|ref|ZP_05787659.1| autoinducer-binding transcriptional regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417516|gb|EEX10775.1| autoinducer-binding transcriptional regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] Length = 251 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ TV ++ + +T + A+ A N Sbjct: 186 LTKRQREALEWVGDGKTTQDIALLMGLTTATVEKHLRLAREALSVETTAQAVLKASLQN 244 >gi|229819242|ref|YP_002880768.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Beutenbergia cavernae DSM 12333] gi|229565155|gb|ACQ79006.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Beutenbergia cavernae DSM 12333] Length = 895 Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 GLL A+ HW ELT RE+E L + T+ EIA L +S NTV + Sbjct: 814 GLLGTPAADGAPHRRSHW----ELTDRELEILDGLRSSLTAAEIARSLFVSVNTVKTHQR 869 Query: 223 SIMRKTATKTRSGAIAYA 240 ++ RK + R A+ A Sbjct: 870 AVYRKLGARNRREAVRLA 887 >gi|225025960|ref|ZP_03715152.1| hypothetical protein EUBHAL_00197 [Eubacterium hallii DSM 3353] gi|224956746|gb|EEG37955.1| hypothetical protein EUBHAL_00197 [Eubacterium hallii DSM 3353] Length = 215 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT--ATKTRSGAIAYAVR 242 ELT +E+E L + EG EIA + IS+ TV +I++I+ KT A KTR AIA + Sbjct: 142 ELTAKEIEVLRLVCEGLEYSEIAERMHISQRTVKFHISNILSKTGYANKTRL-AIAVTNK 200 Query: 243 NNIV 246 N I+ Sbjct: 201 NFII 204 >gi|168185605|ref|ZP_02620240.1| response regulator [Clostridium botulinum C str. Eklund] gi|169296459|gb|EDS78592.1| response regulator [Clostridium botulinum C str. Eklund] Length = 206 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L I EG ++ EI+ + +S T+ NYI ++++K + R+ Y ++N Sbjct: 148 LTEREFEILALIGEGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIYYLKN 205 >gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 243 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE +C ++ G+ S +IA LGIS N V Y+ S K T A+A A Sbjct: 181 LSRRESQCFQLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVARA 235 >gi|110224491|emb|CAJ86500.1| quorum-sensing transcriptional regulator [Serratia marcescens] Length = 248 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E + W S GK+ EIA+ILGI TV +I + ++K AI V Sbjct: 179 FSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGVE 235 >gi|45259328|emb|CAE51186.1| RemP protein [Streptomyces resistomycificus] Length = 221 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L+ +++ + + IA LGIS TV NY++ I K T+ R YA R+ Sbjct: 153 LTERERQILSLVADEQATHRIAKRLGISPKTVRNYLSRIYAKLGTQNRVQTALYAKRS 210 >gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 245 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+IL I TV +I ++++K AI + Sbjct: 180 FSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236 >gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] Length = 237 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ELT RE E L W + GKT EI +I+ + TV ++ + MRK ++ A A Sbjct: 173 EVELTCREREALKWSAAGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAA 231 >gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 214 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ I+ Sbjct: 157 REVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 214 >gi|312143766|ref|YP_003995212.1| transcriptional regulator, LuxR family [Halanaerobium sp. 'sapolanicus'] gi|311904417|gb|ADQ14858.1| transcriptional regulator, LuxR family [Halanaerobium sp. 'sapolanicus'] Length = 255 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 18/101 (17%) Query: 150 KGRIILRDRLWEIGLLAAYQAN-MFKSYDVHW----------------GKDFELTGREVE 192 +G L+D ++ + L++ + AN ++K + +H G + LT RE + Sbjct: 146 EGNFELKDLMY-LKLISQHSANHLYKLFVIHKLKRENEINKEKLIKKSGNQYNLTDREKQ 204 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L I +G ++ EIA L IS NTV +I+ + K +R Sbjct: 205 VLKLIIQGMSNQEIAAELFISINTVKKHISHLFNKCKVSSR 245 >gi|310640997|ref|YP_003945755.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245947|gb|ADO55514.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 218 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT EV + I +G T D+IAV + +SR +++NY+ I K +R+ AI Sbjct: 151 ELTQTEVFIMERIVQGITYDKIAVEIEVSRRSIDNYLRKIYAKLGVSSRAQAI 203 >gi|260911714|ref|ZP_05918290.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260634139|gb|EEX52253.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 318 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|217978486|ref|YP_002362633.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503862|gb|ACK51271.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 209 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT R++ L +S GK++ EIA L IS TV +I +I RK TR+ AI Sbjct: 145 LTPRQLAVLGLLSAGKSNKEIARALSISDLTVKVHITTIFRKLGVATRTQAI 196 >gi|73543101|ref|YP_297621.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72120514|gb|AAZ62777.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 231 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 31/58 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L I G + EIA LG+S TV + ++ RK + R+G + YAV Sbjct: 167 LTRRERDILGCIGRGMANKEIATQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVEQ 224 >gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +++ G+++ EIA L ++ +TV ++ +++RK +R A +AV Sbjct: 160 KLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLRKLNLTSRVQAAVFAVEQG 219 Query: 245 IV 246 IV Sbjct: 220 IV 221 >gi|331700269|ref|YP_004336508.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954958|gb|AEA28655.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 201 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D LT RE+E L + + T+++IA + +S TV NY++S M+K +RS A A Sbjct: 137 EDCPLTDRELEVLRNVDDSGTANDIARRVHLSPGTVRNYLSSAMQKLGAGSRSEAARLA 195 >gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 226 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA L +S TV ++ +++ K + R A+ A + Sbjct: 160 LTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|290959189|ref|YP_003490371.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648715|emb|CBG71828.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 200 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S + K + R Sbjct: 129 AADAISSGDSPLTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGVENRH 188 Query: 235 GAIAYA 240 A+ A Sbjct: 189 AAVRLA 194 >gi|317049512|ref|YP_004117160.1| LuxR family transcriptional regulator [Pantoea sp. At-9b] gi|316951129|gb|ADU70604.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 262 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W S GKT E+A +L ++ +T+ ++ ++K K AI+ A N+ Sbjct: 187 LSTREAEILYWSSTGKTYAEVAEMLQLTVSTIKFHMGKTVKKLGVKNAKHAISLASELNL 246 Query: 246 V 246 + Sbjct: 247 I 247 >gi|225352276|ref|ZP_03743299.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157523|gb|EEG70862.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 223 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 RE E + S G TS EI + LGI TV YI +M+K K R+ A+ Sbjct: 164 REREVMGLCSLGFTSKEIGIKLGIGEPTVKTYIRRVMKKLGAKNRTQAV 212 >gi|167567184|ref|ZP_02360100.1| DNA-binding response regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167572592|ref|ZP_02365466.1| DNA-binding response regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 212 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E ++ G T EIA LGIS TV Y A ++ K S + YAV + I Sbjct: 149 LSKREFEVFRHLASGDTPAEIAQALGISAKTVRIYKAHVLDKLELPNESALVRYAVAHRI 208 >gi|114561787|ref|YP_749300.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333080|gb|ABI70462.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] Length = 210 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T +E + L+ I G T++E+A L IS NTV ++ +I +KT K R A+A Sbjct: 155 TKKEQQVLSLILHGLTNEEMAKELNISVNTVKMHVQNIYKKTKIKNRGQLFAFA 208 >gi|269148498|gb|ACZ28637.1| two component transcriptional regulator LuxR family [uncultured organism] Length = 203 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E + I++GK++ EIA +L +S TV + A +M K K+ + + A+ Sbjct: 143 LTPREKEVMQHIADGKSNKEIAALLELSHRTVEVHRARLMEKMEVKSLAELVPMAL 198 >gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 209 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L ++ G ++ EIA IL IS TV +I +++RK ++R A Sbjct: 150 LTDRECDVLQEVARGLSNKEIAAILHISEETVKVHIRNLLRKLDVRSRVAA 200 >gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. race 4] Length = 233 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 172 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINIG 231 Query: 245 IV 246 +V Sbjct: 232 MV 233 >gi|326387030|ref|ZP_08208640.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208211|gb|EGD59018.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 306 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE E L WIS GK++ +I+ +L IS TV ++ I K +T Sbjct: 246 LTEREAEVLLWISYGKSNADISDVLAISPRTVQKHLERIYEKLGVET 292 >gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 242 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 171 NMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 +M D H + + T RE L ++EG + EIA L S V Y++ + Sbjct: 162 SMLSHGDKHHSRKDDSIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFI 221 Query: 227 KTATKTRSGAIAYAVRNNIV 246 KT T +R+ + YA+ N++V Sbjct: 222 KTGTSSRTELVRYALENHLV 241 >gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 257 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I G T+ EIA L +S T+ +++ +I +K KTR+ A A R + Sbjct: 196 LSTRELEILRCIDRGATNREIAAALSLSTLTIESHVKNIHKKLGVKTRTQATFEARRYGL 255 Query: 246 V 246 + Sbjct: 256 L 256 >gi|330470082|ref|YP_004407825.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813053|gb|AEB47225.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 225 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG+++ EI L +S +TV + + RK + R+ A+A R + Sbjct: 164 LTERELQVLLGMAEGRSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 223 Query: 246 V 246 V Sbjct: 224 V 224 >gi|325916868|ref|ZP_08179116.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536913|gb|EGD08661.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 235 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGIS TV ++ I++K K R+ A YAV+ + Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQAGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|298251437|ref|ZP_06975240.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546029|gb|EFH79897.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1003 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E L ++ G IA L +SR TVN ++ SI K TR+ A A Sbjct: 941 FHLTARECEVLRLLALGHPDARIAQELVLSRRTVNTHLRSIYAKLGVSTRTAAARVAFEQ 1000 Query: 244 NI 245 + Sbjct: 1001 QL 1002 >gi|258592851|emb|CBE69160.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 160 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I++G + +IA L S T+ N+ A I +K + R+G + +A RN + Sbjct: 98 LTPREQQILRLIAQGFSDKQIARTLQRSVRTIENHAARIRQKLHIENRTGLVRFAFRNRL 157 Query: 246 V 246 + Sbjct: 158 I 158 >gi|332529938|ref|ZP_08405889.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040635|gb|EGI77010.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 214 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE + + +G++ EI LG++ NTV+ Y A I+ KT TK YA R+ Sbjct: 151 LSHREHQVFRLLIQGRSVSEIGAQLGLAPNTVSTYRARILEKTGTKNDVELALYAERD 208 >gi|303240659|ref|ZP_07327173.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302591727|gb|EFL61461.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 223 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 13/95 (13%) Query: 165 LAAYQANMF---------KSYDVHWGK----DFELTGREVECLTWISEGKTSDEIAVILG 211 L +Q+N+F K Y G+ F LT +E++ + I+EGK + EIA + Sbjct: 129 LNVFQSNIFENVRKQYNSKKYLEDTGEKEQNSFGLTQKELQLIRLITEGKKNKEIAEQIF 188 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ N + I++K R+ +AV++N+V Sbjct: 189 VTEGSIKNMSSKILKKLNLADRTQLAIFAVKSNLV 223 >gi|288927583|ref|ZP_06421430.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330417|gb|EFC69001.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 318 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++ E+A L ++ TV +++ ++ K + R+ A+ A + + Sbjct: 152 LTGRETEVLLMVARGLSNAEVARGLNVAEQTVKTHVSRVLTKLGLRDRAQAVIAAYESGL 211 Query: 246 V 246 V Sbjct: 212 V 212 >gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L +++G EI I+GIS +TVN++ I K ++R A+A Sbjct: 154 LTDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHIYEKLQVRSRGQAVA 206 >gi|152964143|ref|YP_001359927.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] gi|151358660|gb|ABS01663.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] Length = 128 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++E +A LG++ NTV ++AS+ RK ++ + A A A R+ + Sbjct: 67 LTAREREVLQMVAEACPGALVAERLGLAPNTVAQHLASVRRKYGVRSSATAAALARRDGL 126 Query: 246 V 246 + Sbjct: 127 I 127 >gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 207 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG T+ EIA L IS TV+++ +++ K A K + I A+ + + Sbjct: 145 LTSREKEVLALIAEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGV 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++ G+T+ EIA L +S TV ++ I+ K A + R A+ A + Sbjct: 160 ELTAREHEVLLELAAGRTNAEIAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIG 219 Query: 245 IV 246 +V Sbjct: 220 LV 221 >gi|253998442|ref|YP_003050505.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200518|ref|YP_004039176.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985121|gb|ACT49978.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439834|gb|ADQ83940.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 214 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E +EGK ++EIA +L IS+ TV NY + +K + +A+++ Sbjct: 151 QLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVANYHTLVKQKLGLSNPVEMVRFAIKHG 210 Query: 245 IV 246 ++ Sbjct: 211 LI 212 >gi|238059423|ref|ZP_04604132.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881234|gb|EEP70062.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 970 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++EG T+ EI L IS T+ +++ I K +TR A A +RN Sbjct: 910 LTTREREVLAAVAEGLTNKEIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRN 967 >gi|210634369|ref|ZP_03298095.1| hypothetical protein COLSTE_02017 [Collinsella stercoris DSM 13279] gi|210158848|gb|EEA89819.1| hypothetical protein COLSTE_02017 [Collinsella stercoris DSM 13279] Length = 307 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE E + ++EG + EI+ IS TV N I+S+++KT K R+ Sbjct: 246 ELTDREYEVVRLVAEGLDNHEISAAAFISEGTVRNRISSVLQKTGYKNRT 295 >gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 105 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 41/66 (62%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT+T R Sbjct: 3 DSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVEL 62 Query: 237 IAYAVR 242 + ++++ Sbjct: 63 VRWSLQ 68 >gi|157370683|ref|YP_001478672.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157322447|gb|ABV41544.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 497 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L I EG +IA L ++ NTV N++A + K +RS AI +A Sbjct: 427 DLTARERDVLGLICEGLPDKKIATRLNLAPNTVRNHVAMVYSKLDVHSRSEAIVWA 482 >gi|32441931|gb|AAO38761.1| SwrR [Serratia liquefaciens] Length = 248 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E + W S GK+ EIA+ILGI TV +I + ++K AI V Sbjct: 179 FSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGVE 235 >gi|15894152|ref|NP_347501.1| two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|15023760|gb|AAK78841.1|AE007602_2 Two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|325508280|gb|ADZ19916.1| Two-component response regulator [Clostridium acetobutylicum EA 2018] Length = 218 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 21/114 (18%) Query: 154 ILRDRLWEI---GLLAAYQANMFKSYDV---------HWGKD---------FELTGREVE 192 IL+D +E+ G+ AA++ N+ + +V + K+ ++L+ +E+ Sbjct: 104 ILKDSDYELIYEGIKAAFKGNVVINPEVASKILSENGEYNKEQALEEVKTKYDLSDKEIN 163 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + I+ G ++ EIA L +S T+ N I+ I K + R+ +A +NNIV Sbjct: 164 IVREIASGLSNKEIAEKLFLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNNIV 217 >gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283] Length = 249 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA I GIS +TV +I +++ K AI V ++ Sbjct: 181 FSSRENEVLYWASMGKTYAEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDL 240 Query: 246 V 246 + Sbjct: 241 I 241 >gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] Length = 218 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 8/100 (8%) Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVH--WGKDFE---LTGREVECLTWISEGKTS 203 R++L D+LW +I A + F +H D E LT RE ++ +S+G + Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSKGSKN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EIA L IS +TV ++ S RKT + R +++A +N Sbjct: 173 KEIAEDLSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24] gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans TK24] gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S +TV ++++++ K + R A+ A + Sbjct: 157 LTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 90 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 12 LSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQ 68 >gi|169350169|ref|ZP_02867107.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552] gi|169292952|gb|EDS75085.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552] Length = 67 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E T + ++ EIA IL IS TV N+I+++++K +R A+ VR Sbjct: 5 LTPREREVFTLLINNHSTKEIAQILKISEKTVRNHISNVIQKLGVDSRIQAVFELVR 61 >gi|114217274|dbj|BAF31200.1| AHL-dependent transcriptional regulator [Serratia marcescens] gi|172044716|gb|ACB69923.1| SpnR [Serratia marcescens] Length = 247 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 29/56 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W S GKT EIA I GIS +TV ++ +I+ K AI V Sbjct: 181 FTPRENEVLYWSSMGKTYGEIAAIAGISISTVKFHMGNIVSKLGVSNARQAIRLGV 236 >gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S +TV ++++++ K + R A+ A + Sbjct: 157 LTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|330899224|gb|EGH30643.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] gi|330980772|gb|EGH78875.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 87 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] Length = 214 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G T+ EI+ + +S TV + + I +K KTR+ + YA+R+ Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210 Query: 245 IV 246 ++ Sbjct: 211 LL 212 >gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE++ L + EG ++ EIA L + TV ++I++I+ K R A A R + Sbjct: 155 LTGRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|303237703|ref|ZP_07324263.1| hemerythrin HHE cation binding domain protein [Prevotella disiens FB035-09AN] gi|302482155|gb|EFL45190.1| hemerythrin HHE cation binding domain protein [Prevotella disiens FB035-09AN] Length = 313 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + + +G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 246 LSDREKDVIISVVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 305 Query: 246 V 246 V Sbjct: 306 V 306 >gi|239930320|ref|ZP_04687273.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438665|ref|ZP_06578055.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341560|gb|EFE68516.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 206 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S + K + R Sbjct: 135 AADAIAAGDSPLTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRH 194 Query: 235 GAIAYA 240 A+ A Sbjct: 195 TAVRLA 200 >gi|163849813|ref|YP_001637856.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661418|gb|ABY28785.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 278 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I G D IA L +SRNTV N+ A++ RK R+ A+ + N Sbjct: 212 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 270 >gi|307331258|ref|ZP_07610381.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883070|gb|EFN14133.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G + EIA G+S+ TV NY+++ K + R Sbjct: 135 AADAISAGDSPLTAREAELLELAADGASIAEIAQRAGLSQGTVRNYLSAAAAKLGAENRH 194 Query: 235 GA 236 A Sbjct: 195 AA 196 >gi|282856682|ref|ZP_06265948.1| two-component response regulator [Pyramidobacter piscolens W5455] gi|282585447|gb|EFB90749.1| two-component response regulator [Pyramidobacter piscolens W5455] Length = 203 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 27/126 (21%) Query: 148 FPKGRIILRDRLWEIGLL-----AAYQANMFKSYDVHW----------GKDF-------- 184 FP+ R+++ L E+ + A + ++K DV+ GK Sbjct: 74 FPRVRVVMMTGLPEVTFVERAREAGADSFVYKDLDVNGLAGVIRDTCAGKSVYPGRREEV 133 Query: 185 ----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E LT I +G + EIA L I+ N+V + ++I+ KT ++ + +A Sbjct: 134 LNFGELTRREREVLTLICDGLSRREIAERLNITINSVKTHFSNILSKTGYESVAKLAIFA 193 Query: 241 VRNNIV 246 V N + Sbjct: 194 VSNGFI 199 >gi|167622115|ref|YP_001672409.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352137|gb|ABZ74750.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 213 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 40/61 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ + I+ GK++ EIA LGI+ +TV ++ ++++K K+R + +AV N Sbjct: 151 ELTQRELQIVKLIASGKSNKEIANKLGITDSTVKVHVKNLLKKLTLKSRVEVVLWAVENK 210 Query: 245 I 245 I Sbjct: 211 I 211 >gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 242 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L ++ G+T+ EIA L IS +TV ++AS+M K + R Sbjct: 180 LTAREEEVLLIVARGRTNAEIADELHISLSTVKAHVASLMTKLGARNR 227 >gi|146343765|ref|YP_001208813.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196571|emb|CAL80598.1| putative Transcriptional regulatory protein, luxR family [Bradyrhizobium sp. ORS278] Length = 199 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G LT RE E L ISEG ++ E A+ +GIS T ++ A MRK + Sbjct: 134 GGSSKSLTPREREVLKLISEGHSNKEGALRMGISPRTFESHRAEAMRKLGAR 185 >gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G ++ EIA +L IS TV ++ + K K R+ A+A I Sbjct: 157 LSTREREVLALVAKGTSNREIAAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGI 216 Query: 246 V 246 + Sbjct: 217 L 217 >gi|166031115|ref|ZP_02233944.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC 27755] gi|166028962|gb|EDR47719.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC 27755] Length = 207 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 36/60 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +E+T +E + +++GK++ EIA + +S T+ NYI+ I+ K + R+ + +RN Sbjct: 146 YEITEKERAVMKLVADGKSNKEIAGEMFLSEGTIRNYISGILDKLNLRDRTQLAVFYLRN 205 >gi|33865102|ref|NP_896661.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33638786|emb|CAE07081.1| possible two-component response regulator [Synechococcus sp. WH 8102] Length = 234 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L I G ++ EIA L +S TV + + +++ K + RS A+ A RN+ Sbjct: 162 ELTVREEDVLRGICRGLSNQEIADQLNLSIETVKHSVTAVLSKLDARDRSQAMLIAFRND 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|302188606|ref|ZP_07265279.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 89 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L + +G T+ EIA L IS TV ++++S++RK KTR +A V Sbjct: 10 VTTREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRVELMARCV 65 >gi|256823996|ref|YP_003147956.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687389|gb|ACV05191.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 201 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%) Query: 170 ANMFKSYDVHWGKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A ++ D + L G RE + L ++G+ EIA L +S TV N+++S Sbjct: 119 AAGLRTVDADLAAESALAGPNPLSPRETDVLRLAADGQGVAEIAGALFLSPGTVRNHLSS 178 Query: 224 IMRKTATKTRSGAIAYAVRNN 244 + KT +T +GA A R+N Sbjct: 179 AIGKTGARTSAGA-ATTARDN 198 >gi|256376071|ref|YP_003099731.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920374|gb|ACU35885.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 201 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L +G T ++A +G+S TV N++++ + KT +TR+ A+ A Sbjct: 141 LTARERDVLALARDGGTVADLAKGVGLSEGTVRNHLSAAIGKTGARTRAEAVRIA 195 >gi|134099697|ref|YP_001105358.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008299|ref|ZP_06566272.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912320|emb|CAM02433.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 946 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%) Query: 149 PKGRIILRDRLWEIGLL--AAYQANMFKSYDV-------HWGKDFELTGREVECLTWISE 199 P G L DR E+G AA ++ +S+ G EL+ RE + ++ Sbjct: 847 PDGMGELADRYAELGATRDAARCRHLLRSHGTTTPSRRGRRGYGNELSPREQDVARLLAG 906 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G+T+ EIA L +SR TV ++A ++RK +R+ Sbjct: 907 GRTNREIAEALFLSRRTVEQHVARVLRKLGAASRT 941 >gi|329851875|ref|ZP_08266556.1| response regulator [Asticcacaulis biprosthecum C19] gi|328839724|gb|EGF89297.1| response regulator [Asticcacaulis biprosthecum C19] Length = 212 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 40/75 (53%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + F+S V + LT RE++ L IS+G + + A LG++ +TV ++I SI K Sbjct: 135 DHFRSTAVAHQPEATLTTRELDVLGLISKGLRNADAAHALGLAESTVASHIKSIYSKLGI 194 Query: 231 KTRSGAIAYAVRNNI 245 TR+ A A R + Sbjct: 195 TTRAEAAIRAQRMGL 209 >gi|312882580|ref|ZP_07742320.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369740|gb|EFP97252.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 268 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+ CL + EGK + EI+ I G S TVN Y+ S+ K + A+ A+++ ++ Sbjct: 210 HELLCLFFFKEGKEAKEISQITGYSVATVNTYLRSVREKMNVEKTYQAVIKAIQDGLI 267 >gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi pv. savastanoi] Length = 247 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSTRETGVLKWMAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245 Query: 245 IV 246 +V Sbjct: 246 MV 247 >gi|325673304|ref|ZP_08152996.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555894|gb|EGD25564.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 878 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE++ L + +T++EIA L +S NTV ++ I RK TR A+ A Sbjct: 817 KLTRRELQLLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAA 872 >gi|295697043|ref|YP_003590281.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295412645|gb|ADG07137.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 320 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L +SE K+ +IA L IS TV ++A +MRKT +R +A ++ + Sbjct: 238 FTPREFEVLCLLSENKSYRQIAQHLQISEGTVRAHVAGMMRKTQVHSREELTVWARKHCL 297 Query: 246 V 246 + Sbjct: 298 I 298 >gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 214 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G T+ EI+ + +S TV + + I +K KTR+ + YA+R+ Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210 Query: 245 IV 246 ++ Sbjct: 211 LL 212 >gi|289577641|ref|YP_003476268.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289527354|gb|ADD01706.1| transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] Length = 257 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 +P E +C +F I P +DN+ D++ I + + + I Sbjct: 124 KPEEHYCDIFKQWY-CIATPFHIDNQIVGY-LDISIIEHNMA----------DEMMGFID 171 Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL AN +K D+ +D E LT +++E + ++G T I++ LG+ TV + Sbjct: 172 LLVYKIANEYKREMDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPATVKYHK 231 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I++K K AIA A++ N++ Sbjct: 232 KEIIKKLRVKNLQQAIAKAIKLNLI 256 >gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 211 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA+ L +S TV N++ + RK R YA+ + + Sbjct: 148 LTERETEVLRYVAKGLSAKQIAMKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 207 >gi|166713294|ref|ZP_02244501.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 826 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 36/58 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A AV+ ++ Sbjct: 755 RELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQAVQRGLL 812 >gi|312137920|ref|YP_004005256.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311887259|emb|CBH46568.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 878 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE++ L + +T++EIA L +S NTV ++ I RK TR A+ A Sbjct: 817 KLTRRELQLLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAA 872 >gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 204 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + LT I +G +++EIA +L IS +TV ++++I+ K R+ +A+ V N Sbjct: 143 QLTEREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSNRT-QVAFMVNNK 201 Query: 245 I 245 + Sbjct: 202 L 202 >gi|166710760|ref|ZP_02241967.1| putative transcriptional regulator, LuxR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 235 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGI+ TV ++ I++K K R+ A YAV++ + Sbjct: 174 LSKREKQVLSLLPRGLTNASLAAELGIAPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|86142105|ref|ZP_01060629.1| two-component response regulator [Leeuwenhoekiella blandensis MED217] gi|85831668|gb|EAQ50124.1| two-component response regulator [Leeuwenhoekiella blandensis MED217] Length = 216 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ L+ REVE L +S+G + +IA L +S +TV +I +I +K ++ A+ A Sbjct: 152 EEISLSSREVEVLEQLSKGLSYTKIAENLFLSPSTVRKHIENIYKKLQVHSKIEAVEKAR 211 Query: 242 RNNIV 246 +NNI+ Sbjct: 212 QNNII 216 >gi|86138888|ref|ZP_01057460.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. MED193] gi|85824535|gb|EAQ44738.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. MED193] Length = 251 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ T+ ++ + +T + A+ A N Sbjct: 186 LTNRQREALEWVGDGKTTQDIALLMGLTPATIEKHLRLARSSLSVETTAQAVLKAALQN 244 >gi|319644893|ref|ZP_07999126.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2] gi|317392702|gb|EFV73496.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2] Length = 214 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +I G + EIA L IS TV N+ ++M+K ++ I YA++N Sbjct: 150 LTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKN 207 >gi|262200121|ref|YP_003271329.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083468|gb|ACY19436.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 267 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE + L + G ++ IA LGI+ +T Y+ S MRK TR A+ A R + Sbjct: 206 LTGREHDVLALAALGHSNARIADQLGITVHTTKGYLKSAMRKLGATTRLEAVITARRAGL 265 Query: 246 V 246 + Sbjct: 266 M 266 >gi|320006745|gb|ADW01595.1| regulatory protein LuxR [Streptomyces flavogriseus ATCC 33331] Length = 110 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+GRE E L I+ G T EIA + +S +TV+ YI I KT ++ R Sbjct: 28 LSGREREVLAHIARGATYREIARRMDVSLHTVDTYIRRIRAKTGSRNR 75 >gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 186 LTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + +G TS+ E+A L +S NTV ++ +I+ K + R+ +AYA+++ Sbjct: 149 LTEREQEILELLVQGVTSNKELAERLILSENTVKYHLRNILDKLHLQNRTQVVAYALQHG 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|163731572|ref|ZP_02139019.1| transcription regulatory protein degU, putative [Roseobacter litoralis Och 149] gi|161395026|gb|EDQ19348.1| transcription regulatory protein degU, putative [Roseobacter litoralis Och 149] Length = 218 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ ++A L IS TV + +I RK + +G YA+ + + Sbjct: 151 LTGREQTILLQLAQGKSNRDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 210 Query: 246 V 246 + Sbjct: 211 L 211 >gi|190404427|ref|YP_001961058.1| rcorf83 [Agrobacterium rhizogenes] gi|158322223|gb|ABW33640.1| rcorf83 [Agrobacterium rhizogenes] Length = 224 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE CL W ++GK++ E A++ GI+ TV +Y+ K T +A A + + Sbjct: 164 LSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGL 223 Query: 246 V 246 V Sbjct: 224 V 224 >gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter bemidjiensis Bem] Length = 216 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I++G+ + EIA G+S TV N SIM+K + + YAVR + Sbjct: 153 LSQREREILQLIADGRNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212 >gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei] Length = 246 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 28/57 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE E L W S G T EIA I+GIS TV ++ +++ K AI V Sbjct: 181 FTAREHEVLYWASMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVE 237 >gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. NATL2A] Length = 242 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 8/88 (9%) Query: 167 AYQANMFKSYDVHWGKDFE--------LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 A Q KS H K+ T RE L ++EG + EIA L S V Sbjct: 154 AKQITEIKSMLSHGDKNHSRKDDSIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVE 213 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++ + KT T +R+ + YA+ N++V Sbjct: 214 KYVSRLFIKTGTSSRTELVRYALENHLV 241 >gi|78223365|ref|YP_385112.1| two component LuxR family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194620|gb|ABB32387.1| two component transcriptional regulator, LuxR family [Geobacter metallireducens GS-15] Length = 210 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 179 HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H +D L+ RE + ++ I+ GKT +IA L +S TV+ Y A I+RK K + Sbjct: 141 HNQQDLLQSLSNREYQVMSMIASGKTVGKIATELSLSVKTVSTYRAHILRKLNMKNNAEL 200 Query: 237 IAYAVRNNIV 246 + + N ++ Sbjct: 201 TRFVIENKLI 210 >gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 210 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILDKLGTRDRTRAVLKAI 205 >gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] Length = 252 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N + Sbjct: 191 FTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFTKTGTTSRTELVRYALENGL 250 Query: 246 V 246 V Sbjct: 251 V 251 >gi|330957615|gb|EGH57875.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 82 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L + +G T+ EIA L IS TV ++++S++RK +TR+ +A V Sbjct: 3 VTMREQEVLDLLLQGFTNKEIARQLSISGYTVRDHVSSLLRKNQVRTRAELMARCV 58 >gi|330468504|ref|YP_004406247.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811475|gb|AEB45647.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 192 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE + L + G E+A LG++ TV N++ I RK +TR A+ A Sbjct: 128 RGSPLTSRETQILDLTAAGAPVAEVARALGLAPGTVRNHLGRITRKVGARTRVEAVRVA 186 >gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 255 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 163 GLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 GL+A QA++ + +G+D LT RE + L I G + IA LG+S NTV Sbjct: 161 GLVAQKQASLEDIDLERKIDFGQDL-LTMRETQILDLICVGMQNKIIADRLGLSENTVKV 219 Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244 ++ +I +K + R+ A A R++ Sbjct: 220 HVRNIYKKMNVRNRTEAAARYFRSD 244 >gi|300698252|ref|YP_003748913.1| LuxR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074976|emb|CBJ54545.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CFBP2957] Length = 252 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E I +G+++ EIA ++ S +TV +Y++SIM KT + R Sbjct: 183 LTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYLSSIMDKTGCENR 230 >gi|292491953|ref|YP_003527392.1| LuxR family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291580548|gb|ADE15005.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4] Length = 239 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +LT RE + + + EGK S IA LGIS TV ++ A +M K T+ R+ I Sbjct: 167 QLTPREQQVMEGLIEGKLSRIIASELGISTKTVEHHRAQVMTKLQTRNRAELI 219 >gi|269125139|ref|YP_003298509.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310097|gb|ACY96471.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 266 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE E L+ ++G + EIA +G++ TV Y+ S+MRK + R A+ Sbjct: 205 LSRREHEALSHAAQGLPNAEIAARMGLTPGTVKAYLRSVMRKLGCRNRMEAV 256 >gi|229589739|ref|YP_002871858.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361605|emb|CAY48483.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 218 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ + L I+ GKT+ EIA LGIS TV +++++ + TR+ A A Sbjct: 149 LTARQKQVLGLIAAGKTNKEIARQLGISPFTVRIHVSTLFKTLGVPTRAAAAA 201 >gi|229134173|ref|ZP_04262991.1| Response regulator [Bacillus cereus BDRD-ST196] gi|228649281|gb|EEL05298.1| Response regulator [Bacillus cereus BDRD-ST196] Length = 597 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IAV L +S T+ NY +++ K R AI A Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAVKLLLSEGTIRNYCSNLYSKLGVNNREEAIKMARTE 594 Query: 244 NIV 246 NI+ Sbjct: 595 NIL 597 >gi|111221107|ref|YP_711901.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111148639|emb|CAJ60313.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 340 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L ++ G T+ +IA L +S TV +++ I+RK RS A+A Sbjct: 275 LTPREREVLRILAGGATNAQIAAALTVSETTVKSHVKHILRKLRATNRSEAVA 327 >gi|54025254|ref|YP_119496.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016762|dbj|BAD58132.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 872 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTG E+ L + G+T+ +IA LG+S NTV ++ I K +R+ A+ A Sbjct: 812 LTGTELRVLKHLPTGRTTSQIAADLGVSVNTVKTHLRGIYGKLGIASRADALTEA 866 >gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 205 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+GREVE L +++G ++ IA L +S TV +++ K +R+ A+A A Sbjct: 142 VELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARER 201 Query: 244 NIV 246 ++ Sbjct: 202 GLI 204 >gi|91776114|ref|YP_545870.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710101|gb|ABE50029.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 311 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 26/44 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 F LT RE E L W +GKT+ +I ILG S TVN ++ + K Sbjct: 245 FGLTQRESEVLYWAIKGKTNRDIGDILGTSPRTVNKHMEHVFAK 288 >gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L ++ G+T+ EIA L + +TV ++AS+M K + R Sbjct: 155 LTKREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNR 202 >gi|227495115|ref|ZP_03925431.1| response regulator [Actinomyces coleocanis DSM 15436] gi|226831567|gb|EEH63950.1| response regulator [Actinomyces coleocanis DSM 15436] Length = 202 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E LT ++ T E+A L +S TV N+I++I+ KT K R+ A A N Sbjct: 143 TQREKEILTAFTDSATVAEVAAKLFLSPGTVRNHISNIISKTNAKNRAEAARIAKENG 200 >gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 90 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 38/57 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 12 LSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQ 68 >gi|209883854|ref|YP_002287710.1| two component transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] gi|209872050|gb|ACI91846.1| two component transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] Length = 224 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 211 >gi|159040340|ref|YP_001539593.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919175|gb|ABW00603.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 207 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ G + EIA L S TV N I + + + R+ A+AYA+R + Sbjct: 147 LTSREIDVLRLMANGFDTHEIADELCYSERTVKNVIYGVTHRLKLRNRAHAVAYALRTGM 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|16119495|ref|NP_396201.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15162039|gb|AAK90642.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 210 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT RE + L I+ GK++ + A+ L I+ T+ + +I RK T +G I YA Sbjct: 143 GRLKELTTREQDVLLLIARGKSNRDAALALDIAERTMETHRKNIKRKLDIATTAGLIRYA 202 Query: 241 VRNNIV 246 + + ++ Sbjct: 203 IDHGLI 208 >gi|52081142|ref|YP_079933.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52786522|ref|YP_092351.1| hypothetical protein BLi02787 [Bacillus licheniformis ATCC 14580] gi|52004353|gb|AAU24295.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349024|gb|AAU41658.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 214 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +I G + EIA L IS TV N+ ++M+K ++ I YA++N Sbjct: 150 LTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKN 207 >gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402] Length = 201 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L RE + L +++G + EIA L +S TV NY++SI+ K + R+ + Y Sbjct: 143 DLNDRETDILELVADGLNNKEIANRLSLSEGTVRNYVSSILEKLNLRDRTQLVVY 197 >gi|88857442|ref|ZP_01132085.1| putative response regulator [Pseudoalteromonas tunicata D2] gi|88820639|gb|EAR30451.1| putative response regulator [Pseudoalteromonas tunicata D2] Length = 212 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +++ +H+ LT RE + L + +G ++ EIA L IS TV ++I S+ K +R Sbjct: 139 QAFAMHFEPIKSLTKRENDVLIELVKGSSNKEIARDLNISSFTVADHIKSMFSKLNVSSR 198 Query: 234 SGAIAYAV 241 IAY + Sbjct: 199 GAVIAYGL 206 >gi|114048791|ref|YP_739341.1| LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113890233|gb|ABI44284.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 221 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + ++S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTNRERTIIQFVSNGARNKEIADRLFISEHTVKAHISSIFRKTQSRNR 203 >gi|114561746|ref|YP_749259.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333039|gb|ABI70421.1| transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 222 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 157 LTSRERTIIQLVSSGARNKEIAQRLCISEHTVKAHISSIFRKTESRNR 204 >gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. B076] Length = 189 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 128 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINIG 187 Query: 245 IV 246 +V Sbjct: 188 MV 189 >gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] Length = 243 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 AN + SY +LT RE E L I+ G ++ EIA L IS TV ++A I+ K Sbjct: 173 ANAYNSYL------NDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKID 226 Query: 230 TKTRSGAIAYAVRNNIV 246 + R A+ +A N +V Sbjct: 227 ARDRVQAVVFAYENGLV 243 >gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT+T +R+ + YA+ N++ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] Length = 214 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE L I++GKT+ EI L IS TV ++ ++ K + ++R A +A Sbjct: 153 ELTEREKSVLKLIAQGKTNKEIGKALEISDGTVKVHVKHVLHKLSFRSRVEAAVWA 208 >gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E+T RE E L ++ G ++DEIA L IS T +++ IM K + R+ + A + Sbjct: 155 EITDREREVLGLVAGGMSNDEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVLAYESG 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L ++ G T+ EIA +G+ TV +++A+++ KT + R+ A+ A + Sbjct: 170 KLTEREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESG 229 Query: 245 IV 246 + Sbjct: 230 FI 231 >gi|239944416|ref|ZP_04696353.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239990873|ref|ZP_04711537.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291447883|ref|ZP_06587273.1| response regulator receiver protein [Streptomyces roseosporus NRRL 15998] gi|291350830|gb|EFE77734.1| response regulator receiver protein [Streptomyces roseosporus NRRL 15998] Length = 240 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +SEG + EIA S TV N + + + + R+ A+ YA+R+ + Sbjct: 180 LTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKNVLHEVATRLELRNRAHAVGYAMRHGL 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ +IA L IS TV N++ S +RK R YA+ + + Sbjct: 153 LTERETEVLRLVAKGLTAKQIADRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 212 >gi|149371877|ref|ZP_01891196.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355017|gb|EDM43578.1| two-component response regulator [unidentified eubacterium SCB49] Length = 223 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I + T+ EI L ISR TV + +++ KT K +G + YA+++N+ Sbjct: 157 LSKRELEVLELICQQFTTVEIGEKLYISRRTVEVHRNNLLLKTDVKNVAGLVIYAIQHNL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N++ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|116254846|ref|YP_770682.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|19338425|emb|CAD19127.2| two-component response regulator [Rhizobium leguminosarum bv. viciae] gi|115259494|emb|CAK10632.1| two-component response transcriptional regulator of mctP [Rhizobium leguminosarum bv. viciae 3841] Length = 214 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G D LT RE + L I G+++ EIA LGI+ T + ++ +K T +G I Sbjct: 143 VEEGSD-PLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGITTTAGLI 201 Query: 238 AYAVRNNIV 246 YA+ + IV Sbjct: 202 RYALDHGIV 210 >gi|86360200|ref|YP_472089.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86284302|gb|ABC93362.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I G+++ EIA +LGIS T + ++ +K T +G I YA+ + I Sbjct: 150 LTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHGI 209 >gi|16125332|ref|NP_419896.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15] gi|221234071|ref|YP_002516507.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13422382|gb|AAK23064.1| transcriptional regulator, LuxR family [Caulobacter crescentus CB15] gi|220963243|gb|ACL94599.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] Length = 137 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTG+E++ L ++ G+++ EIA LG+S NTV ++ ++ K R+ A+ A Sbjct: 73 SLSLTGQEIKVLERLAAGRSNKEIARDLGLSPNTVKTHVGNLYAKLEVSRRTQAVGKA 130 >gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ISEG +++EIA L + TV ++++S++ K + R+ A+ A + Sbjct: 179 LTDREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGF 238 Query: 246 V 246 V Sbjct: 239 V 239 >gi|330896907|gb|EGH28489.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 89 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L + +G T+ EIA L IS TV ++++S++RK +TR+ +A V Sbjct: 10 VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65 >gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 216 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE++ L I++G ++ EIA L +S TV NYI+SI+ K + R+ Y +++ Sbjct: 159 LSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQLAIYYLKS 216 >gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 237 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +H LT RE + L I++G EIA L +S TV N+ A I +K R+ + Sbjct: 167 LHDSLGARLTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALV 226 Query: 238 AYAVRNNIV 246 YA+R +++ Sbjct: 227 RYALRAHLI 235 >gi|289641751|ref|ZP_06473909.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508395|gb|EFD29336.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 422 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 D LT RE+E L +++G T+ IA L +S TV ++ I+RK R+ A++ Sbjct: 342 DSPLTRREIEVLRHMADGATNARIATRLMVSEGTVKVHVKHILRKLGATNRAEAVS 397 >gi|289642550|ref|ZP_06474693.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507638|gb|EFD28594.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 389 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L ++ G T+ +IA L +S TV +++ I+RK R+ AIA Sbjct: 324 LTPREREVLALLASGATNAQIADRLTVSETTVKSHVKHILRKLHASNRAEAIA 376 >gi|226363828|ref|YP_002781610.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242317|dbj|BAH52665.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 546 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV L ++ GK++ +A L +S TV ++++I K +RS A AYA +++ Sbjct: 482 LTPREVCVLRLVAAGKSNRAVATDLFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHHL 541 Query: 246 V 246 V Sbjct: 542 V 542 >gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 217 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 181 GKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G+D E LT RE++ L +++GK++ IA + +S TV ++ SI+ K R Sbjct: 144 GEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMTSILSKLHLANRV 203 Query: 235 GAIAYAVRNNI 245 A YA+R I Sbjct: 204 EATLYALREGI 214 >gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 233 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+ECL+ I+ G IA LGI TV ++ + +K TR A+A A Sbjct: 175 LTPRELECLSLIASGLRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVALA 229 >gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99036997|gb|ABF63609.1| two component transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 233 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ E+A L IS TV + +I RK + +G YA+ + + Sbjct: 166 LTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 225 Query: 246 V 246 + Sbjct: 226 L 226 >gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 236 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +S + + T RE + L ++ G T+ +IA L I T ++ ++RK Sbjct: 154 LRSPEEKERPELRFTPREKQVLELLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPN 213 Query: 233 RSGAIAYAVRNNIV 246 R G YAV IV Sbjct: 214 RVGLALYAVEKQIV 227 >gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 224 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT RE++ ++ G T+ EIA L + TV ++ SI+ K A + R+ + A Sbjct: 149 GRLAELTPRELDVARLVARGMTNAEIAAELFLGEGTVKTHVTSILSKLALRNRTQIVVAA 208 Query: 241 VRNNIV 246 + +V Sbjct: 209 YESGLV 214 >gi|56461106|ref|YP_156387.1| response regulator [Idiomarina loihiensis L2TR] gi|56180116|gb|AAV82838.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina loihiensis L2TR] Length = 210 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT ++ L ++ EG + +IA LGI+ TV +I +I RK +R+ A+ A R Sbjct: 150 ELTPQQYRVLHFLHEGLLNKQIAYQLGITEATVKAHITAIFRKLGVYSRTQAVLVAER 207 >gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q+ +++ K LT E E L W + GKTS EI+VI S VN ++ +I R Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSWEKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A AV ++ Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237 >gi|260591672|ref|ZP_05857130.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] gi|260536472|gb|EEX19089.1| transcriptional regulator, LuxR family domain protein [Prevotella veroralis F0319] Length = 204 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I +G + EIA L IS TV + +IM K K+ S YAV + Sbjct: 139 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 198 Query: 246 V 246 V Sbjct: 199 V 199 >gi|171057984|ref|YP_001790333.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775429|gb|ACB33568.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 273 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT R+ + L + EGK + IA LG+S TV +++A+++R ++R A+ AVR+ Sbjct: 195 LGLTPRQAKVLMLLMEGKANKVIAKELGLSVETVKDHVAAVLRCLGVRSRMQAV-IAVRH 253 >gi|118443997|ref|YP_877397.1| response regulator [Clostridium novyi NT] gi|118134453|gb|ABK61497.1| Response regulator (CheY-like recever domain and HTH) [Clostridium novyi NT] Length = 209 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L I +G ++ EI+ + +S T+ NYI ++++K + R+ Y ++N Sbjct: 151 LTERELEILALIGQGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIYYLKN 208 >gi|186470967|ref|YP_001862285.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197276|gb|ACC75239.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 231 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ R+ E L I+ G+T+ EIA L I+ TV ++ +++K +R A YAV Sbjct: 170 LSARQEEILAHIARGETNKEIARALNIAETTVKIHVQQVLKKLKLASRVQAATYAV 225 >gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 382 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S +TV ++++++ K A + R A+ A + Sbjct: 317 LTAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALRDRVQAVICAYETGL 376 Query: 246 V 246 + Sbjct: 377 I 377 >gi|259419012|ref|ZP_05742929.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259345234|gb|EEW57088.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 251 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ T+ ++ +T + A+ A +N Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLCVETTAQAVLKAALHN 244 >gi|255532626|ref|YP_003092998.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345610|gb|ACU04936.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 224 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + + RE+E L I+EG T+ E+A L IS+ TV + S+ KT + + I YA+ + Sbjct: 161 IDFSSREIEILELIAEGLTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALIRYAMVH 220 Query: 244 NIV 246 +I+ Sbjct: 221 DIL 223 >gi|302345392|ref|YP_003813745.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] gi|302150188|gb|ADK96450.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] Length = 204 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE+E L+ I +G + EIA L IS TV + +IM K K+ S YAV Sbjct: 135 KNKILSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 194 >gi|38230157|gb|AAR14177.1| AHL receptor-like protein [Aeromonas sp. NLEP A-1607] Length = 58 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 26/52 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT R CL EGKTS IA LGI+ T N ++ + RK + AI Sbjct: 7 LTDRXTXCLFXAXEGKTSGXIACXLGITERTXNYHLNXVTRKXGSMNXYXAI 58 >gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE E LT ++ G + EIA LG+S T +++ IM K + R+ + A + + Sbjct: 160 LSGREREVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|83748008|ref|ZP_00945038.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551] gi|207738688|ref|YP_002257081.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609] gi|83725310|gb|EAP72458.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551] gi|206592056|emb|CAQ58962.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609] Length = 252 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E I +G+++ EIA ++ S +TV +Y++SIM KT + R Sbjct: 183 LTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYLSSIMDKTGCENR 230 >gi|329940271|ref|ZP_08289553.1| respose regulatory protein [Streptomyces griseoaurantiacus M045] gi|329301097|gb|EGG44993.1| respose regulatory protein [Streptomyces griseoaurantiacus M045] Length = 211 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L +S G + EIA L IS TV ++ I K +TR+GA+A A Sbjct: 150 LSARESEILQQLSGGLGNREIARALFISEATVKTHLQRIYGKLGVETRAGAVAVA 204 >gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G T+ IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 211 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ L+ RE E L +++G ++ EIA LG+S +TV ++ I+ K + R+ A A Sbjct: 146 GEVSALSDRETEVLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKLSASDRTHAAVKA 205 Query: 241 VRNNIV 246 +R ++ Sbjct: 206 LRAGLL 211 >gi|290957234|ref|YP_003488416.1| response regulator [Streptomyces scabiei 87.22] gi|260646760|emb|CBG69857.1| putative response regulator [Streptomyces scabiei 87.22] Length = 241 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++ L ++EG + EIA L S TV N + + + + R+ A+AYA+R Sbjct: 181 LVPREIDVLRLVAEGMDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREGY 240 Query: 246 V 246 + Sbjct: 241 I 241 >gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 247 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ A+ Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAI 242 >gi|220935078|ref|YP_002513977.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996388|gb|ACL72990.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 220 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 10/85 (11%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +G LA QAN F EL+GRE + L I +G+T IA L IS TV+ Y Sbjct: 138 LGGLAKGQANPFD----------ELSGRERQILLMILQGQTPQAIATALNISPKTVSTYK 187 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +M K + A ++ ++ Sbjct: 188 CRVMGKLGISNDMQLVTLAAQHGLI 212 >gi|94970529|ref|YP_592577.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552579|gb|ABF42503.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 228 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF LT RE+E + ++EG + EIA L IS TV ++ I K TR +A+ Sbjct: 162 DFGLTPRELEIVALVTEGCGNREIATRLTISEETVKRHLTHIFDKVGMSTRLELALFALD 221 Query: 243 NNI 245 +N+ Sbjct: 222 HNL 224 >gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 200 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAI 237 W + LT RE + L EG++ EIA +L +S TV NY++ + K A +T + I Sbjct: 134 WTEADPLTDRERQVLRHAGEGRSGAEIAGLLNLSEGTVRNYLSEAISKLGAANRTEAARI 193 Query: 238 AY 239 A+ Sbjct: 194 AH 195 >gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA L + TV +++ SI+ K + R A+ YA + + Sbjct: 160 LTAREHEVLRLLARGWSNAEIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|219664363|gb|ACL31213.1| two-component system putative response regulator [Rhodococcus sp. TFB] Length = 206 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E L I+ G T+ EIA L +S TV ++ ASI RK +TR+ Sbjct: 145 LSSRELEVLKLIASGLTNTEIAEGLTVSSRTVESHRASIQRKLLLRTRA 193 >gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx, regulates anaerobic respiration and fermentation (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424] gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424] Length = 217 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G+++ EIA LG++ +TV ++ +I++K +R YAV + + Sbjct: 155 LTAREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214 >gi|189466603|ref|ZP_03015388.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM 17393] gi|189434867|gb|EDV03852.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM 17393] Length = 275 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 KD LT E L I+ GKT+ EIA +S +TVN++ +I RK A YA+ Sbjct: 204 KDDLLTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 263 Query: 242 RNNIV 246 + IV Sbjct: 264 KAGIV 268 >gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 221 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L ++ +++ IA LG+S TV +I SI+RK K+R A AV Sbjct: 156 LTPREREILMHVARAESNKVIARELGVSDGTVKLHIKSILRKLGVKSRVEAAVKAV 211 >gi|320008377|gb|ADW03227.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REV+ L ++EG + EIA L S TV N + + + + R+ A+AYA+R Sbjct: 142 LAPREVDVLRLVAEGMDTGEIASKLSYSERTVKNVMHGLTTRLQLRNRAHAVAYALREGY 201 Query: 246 V 246 + Sbjct: 202 I 202 >gi|302038541|ref|YP_003798863.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300606605|emb|CBK42938.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+A Q +F ELT R+ E L I+EG+T EIA +L IS TV + A I Sbjct: 138 LSAGQVGLFAQRQ-------ELTPRQREVLQLIAEGRTIKEIASLLNISPKTVEFHKAQI 190 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 + +T + YA+ + + Sbjct: 191 IFHLNLRTTAELTKYALAHGL 211 >gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 557 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L + +G ++ EIA L IS +TV N+I +I +K RS IA + N Sbjct: 489 LTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547 >gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 228 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L + G T+ EIA L IS TV ++ ++ KT ++ R A +A R Sbjct: 159 ELTEREHEILIAVGRGWTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAYRTG 218 Query: 245 IV 246 +V Sbjct: 219 LV 220 >gi|156932979|ref|YP_001436895.1| transcriptional regulator NarP [Cronobacter sakazakii ATCC BAA-894] gi|156531233|gb|ABU76059.1| hypothetical protein ESA_00782 [Cronobacter sakazakii ATCC BAA-894] Length = 214 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LTGRE++ L ++ G ++ +IA L IS TV +I +++RK ++R A Sbjct: 154 LTGRELDVLQEVARGLSNKQIASALQISEETVKVHIRNLLRKLNVRSRVAA 204 >gi|153007788|ref|YP_001369003.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559676|gb|ABS13174.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 213 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE + L ++EG ++ EIA+ LGIS TV + +I +K + +G Y + Sbjct: 145 KSEGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTRYVI 204 Query: 242 RNNI 245 N + Sbjct: 205 ENRL 208 >gi|187923501|ref|YP_001895143.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714695|gb|ACD15919.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 522 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ RE E L IS G ++ E+A IL +S +TV ++ S+ RK TR+ A Sbjct: 462 LSPREAEVLKHISLGASNKEVARILELSPSTVRTHVESVFRKLECSTRAAA 512 >gi|148257278|ref|YP_001241863.1| putative two-component hybrid sensor histidine kinase and response regulator [Bradyrhizobium sp. BTAi1] gi|146409451|gb|ABQ37957.1| putative two-component hybrid sensor histidine kinase and response regulator [Bradyrhizobium sp. BTAi1] Length = 596 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 28/46 (60%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 T R+ E + + G S IAV LGISR TV ++ ASIM+K ++ Sbjct: 538 TRRQQEVMQRVLAGHPSKNIAVDLGISRRTVESHRASIMKKAGVRS 583 >gi|291543163|emb|CBL16273.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus bromii L2-63] Length = 212 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + T RE+E L ++ G T+ EIA L I+ TV NYI ++ KT K+R+ Sbjct: 142 DFTERELEVLRELTSGDTNTEIAKRLYIAPGTVKNYIQYMLEKTGFKSRT 191 >gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L +EG EIA L +S TV NY++ I+ K +TR A+ A Sbjct: 141 LTTRELEVLKAAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVEAVTIA 195 >gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56] Length = 241 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 183 DF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 DF +L+ RE++CL + G + +I L IS + V Y+AS RK T S A+A A Sbjct: 177 DFPQLSRRELQCLEMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKA 235 >gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 242 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT+T +R+ + YA+ N++ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|99081053|ref|YP_613207.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037333|gb|ABF63945.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 251 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L W+ +GKT+ +IA+++G++ T+ ++ + +T + A+ A +N Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARATLSVETTAQAVLKAALHN 244 >gi|313204085|ref|YP_004042742.1| transcriptional regulator, luxr family [Paludibacter propionicigenes WB4] gi|312443401|gb|ADQ79757.1| transcriptional regulator, LuxR family [Paludibacter propionicigenes WB4] Length = 220 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK LT E+E + ++GKT+ EIA +S +T+N + +I RK I +A Sbjct: 148 GKRDLLTHTELELIQLFTQGKTAKEIADSRCLSHHTINTHRKNIFRKLEINNVQELIKFA 207 Query: 241 VRNNIV 246 ++N +V Sbjct: 208 LKNGLV 213 >gi|288957190|ref|YP_003447531.1| two-component response regulator [Azospirillum sp. B510] gi|288909498|dbj|BAI70987.1| two-component response regulator [Azospirillum sp. B510] Length = 241 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 29/50 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 L+ RE E L I EGK S IA LGIS TV + A IM KTA ++ G Sbjct: 159 LSRRESEVLELIVEGKQSKTIAWELGISIKTVEVHRARIMEKTACRSIVG 208 >gi|290962398|ref|YP_003493580.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260651924|emb|CBG75054.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 913 Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+GRE + L + +++EIA L +S NTV ++ S+ RK A R+ A+ A Sbjct: 852 DLSGRERDVLRGLDRMMSTEEIAADLCVSVNTVKTHLKSVFRKLAVNRRNDAVRRA 907 >gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes] gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes] Length = 224 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE CL W ++GK++ E A++ GI+ TV +Y+ K T +A A + + Sbjct: 164 LSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGL 223 Query: 246 V 246 V Sbjct: 224 V 224 >gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 234 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L W++ G+ EIA LG+S TV N++ ++ T + A+ A R Sbjct: 172 LSTREREVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRG 230 >gi|331696783|ref|YP_004333022.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951472|gb|AEA25169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 892 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L ++ T+ EI + +S NTV ++ SI RK +R A+A V I Sbjct: 825 LSDREVEVLGHLAAMLTAAEIGAEMFVSVNTVKTHLKSIYRKLGVSSRRQAVARGVELGI 884 Query: 246 V 246 V Sbjct: 885 V 885 >gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 209 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E L + +G+ + EIA LGI+ TV ++ ++ K R+ A AV + Sbjct: 145 LTAKELEILELVVQGRRNKEIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGL 204 Query: 246 V 246 V Sbjct: 205 V 205 >gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16] gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 218 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G+++ EIA LG++ +TV ++ +I++K +R YAV + + Sbjct: 155 LTAREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214 >gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 208 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+GREVE L +++G ++ IA L +S TV +++ K +R+ A+A A Sbjct: 145 VELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARER 204 Query: 244 NIV 246 ++ Sbjct: 205 GLI 207 >gi|226308220|ref|YP_002768180.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226187337|dbj|BAH35441.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 881 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L + G EIA L +S NT+ +++ ++ RK +R A+A A R+N Sbjct: 815 QLTKREMDVLVELGLGIPIGEIARKLFVSNNTLKSHLRALYRKLGAHSREEAVAAAHRHN 874 Query: 245 IV 246 ++ Sbjct: 875 LL 876 >gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083] gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083] Length = 215 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++ G + EIA L IS TV ++ I K +TR+GA+A A Sbjct: 154 LSAREHEILAQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVA 208 >gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE ECL + ++G T+ IA L S TVN ++ S RK + R A+ Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243 >gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 240 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 AN + SY +LT RE E L I+ G ++ EIA L IS TV ++A I+ K Sbjct: 170 ANAYNSYL------NDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKID 223 Query: 230 TKTRSGAIAYAVRNNIV 246 + R A+ +A N +V Sbjct: 224 ARDRVQAVVFAYENGLV 240 >gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 218 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++G ++ EIA L IS T ++++I+ K R+ YA+R Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIADTLVISEKTTKTHLSNILSKLHLADRTQVAIYALRKR 210 Query: 245 IV 246 +V Sbjct: 211 LV 212 >gi|288918501|ref|ZP_06412852.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350141|gb|EFC84367.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 231 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L+ I+EG T+ +IA + ++ TV NY++S++ K ++R+ A +A + Sbjct: 172 LTDQERRILSLIAEGLTNRQIAARMFLAEKTVKNYVSSMLAKLGMESRTQAAVFATK 228 >gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 216 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ I+ Sbjct: 159 REVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 216 >gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] Length = 256 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE++ LT+++ G + ++A L IS +T+ Y+ S K A+A AV + Sbjct: 175 LSGREIDVLTYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHAVARAVSEGL 234 Query: 246 V 246 + Sbjct: 235 I 235 >gi|297191143|ref|ZP_06908541.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723336|gb|EDY67244.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 282 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE++ L ++ G T+ A LG+ TV Y+ S MRK +TR A+ A R Sbjct: 218 GVSLTPRELDVLGCVASGATNATAAERLGLRPETVKAYLRSAMRKLGARTRLEAVVAARR 277 Query: 243 NNIV 246 ++ Sbjct: 278 AGLL 281 >gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ EIA L +S +TV ++++++ K + R A+ A + Sbjct: 157 LTAREVEILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp. subtilis str. 168] gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp. subtilis str. 168] gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5] gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis] gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp. subtilis str. 168] gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5] Length = 213 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +EV L I++G S IA LG+S TV + + SI K +R+ A+ A++ Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207 Query: 245 IV 246 I+ Sbjct: 208 IL 209 >gi|298369040|ref|ZP_06980358.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] gi|298283043|gb|EFI24530.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] Length = 218 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +T+ ++ +I+RK +R A YAV++ + Sbjct: 153 LTPREMEILGYLAAGHSNKVIARHLELAESTIKVHVQNILRKLNLSSRVQAAVYAVQHKV 212 >gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I +G ++ EIA L ++ TV NY+ S++ K + R+ A A+ R Sbjct: 149 LTDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIARRG 207 >gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 557 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L + +G ++ EIA L IS +TV N+I +I +K RS IA + N Sbjct: 489 LTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547 >gi|239816237|ref|YP_002945147.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802814|gb|ACS19881.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 188 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 26/48 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + G TS EI LGIS TV + A +MRK A T Sbjct: 130 ELTPREREVAAQVMRGLTSKEIGKALGISHRTVELHRARLMRKYAAAT 177 >gi|218130412|ref|ZP_03459216.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697] gi|217987413|gb|EEC53743.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697] Length = 236 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E L I+ GKT+ EIAV +S +T+N++ +I RK A YA++ I Sbjct: 169 LTSAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKAGI 228 Query: 246 V 246 V Sbjct: 229 V 229 >gi|209518938|ref|ZP_03267749.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. H160] gi|209500661|gb|EEA00706.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. H160] Length = 913 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E + I++G+++ EIA LGI+ TV +++ SI K R+ A++ A Sbjct: 850 LSARESEIVGLIAQGQSNKEIARSLGIAPETVKSHVKSIFLKLEVDKRAHAVSRA 904 >gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 211 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE E L + EGKT+ +IA L +S NT+ ++ IM K + R A A+ Sbjct: 146 KSTNLSPREFEVLKLMVEGKTNVKIAEELYLSPNTIKTHVRGIMNKLSVDDRVQAAVTAL 205 Query: 242 RNNIV 246 R +V Sbjct: 206 RLGLV 210 >gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis] Length = 236 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++G ++ I L IS TV N++++I++K R+ A+ +++N Sbjct: 173 LTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKN 230 >gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum] gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 245 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+IL I TV +I ++++K AI + Sbjct: 180 FSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236 >gi|329961013|ref|ZP_08299292.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] gi|328532299|gb|EGF59103.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT 12057] Length = 220 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 KD LT E L I+ GKT+ EIA +S +TVN++ +I RK A YA+ Sbjct: 149 KDNLLTPAERSILKEIALGKTTKEIAADRNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 208 Query: 242 RNNIV 246 + IV Sbjct: 209 KAGIV 213 >gi|304382776|ref|ZP_07365260.1| transcriptional regulator [Prevotella marshii DSM 16973] gi|304336095|gb|EFM02341.1| transcriptional regulator [Prevotella marshii DSM 16973] Length = 318 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + + +G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|300782911|ref|YP_003763202.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792425|gb|ADJ42800.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 207 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L ++ G ++ EIA L S+ TV + + + + + RS A+AYA+R + Sbjct: 147 MSDRETEVLKLVAAGHSTQEIADELCYSQRTVKSILHDVTNRFQLRNRSHAVAYALREGL 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+ G ++ EIA L ++ TV +++ I+ KT + R+ A+ A + + Sbjct: 156 LTPRELDVLRLIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|254463119|ref|ZP_05076535.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium HTCC2083] gi|206679708|gb|EDZ44195.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium HTCC2083] Length = 201 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++G+++ E+A L IS TV + +I RK + +G YA+ + + Sbjct: 134 LTGREQTVLLQLAKGQSNKEVAAALNISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 193 Query: 246 V 246 + Sbjct: 194 L 194 >gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42] gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42] Length = 211 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E+ L +++G S IA LGIS TV + SI K +R+ A+ A++ Sbjct: 146 QLTDKEIIVLEAVAQGHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKG 205 Query: 245 IV 246 I+ Sbjct: 206 IL 207 >gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] Length = 204 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTG+E L +S G ++ IA L S T+ N+++ I+ K K R+ A+ A+ +N+ Sbjct: 144 LTGKEQTVLQCLSLGMSNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRTQAVIKAINHNL 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|308068201|ref|YP_003869806.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305857480|gb|ADM69268.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 218 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT EV + I +G T D+IA+ + +SR +++NY+ I K +R+ AI Sbjct: 151 ELTQTEVFIMERIVQGITYDKIAIEIEVSRRSIDNYLRKIYAKLGVSSRAQAI 203 >gi|289676954|ref|ZP_06497844.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] gi|330946341|gb|EGH47461.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] gi|330977851|gb|EGH77754.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 89 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L + +G T+ EIA L IS TV ++++S++RK +TR+ +A V Sbjct: 10 VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65 >gi|254466822|ref|ZP_05080233.1| transcriptional regulator, LuxR family, putative [Rhodobacterales bacterium Y4I] gi|206687730|gb|EDZ48212.1| transcriptional regulator, LuxR family, putative [Rhodobacterales bacterium Y4I] Length = 242 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ G + IA LGI+ TV + S RK KTR A+A AVR+ + Sbjct: 180 LSSREKQMLALLAAGYLNTRIAHELGIAEVTVRKTLLSARRKLGAKTREEALAIAVRSGL 239 Query: 246 V 246 + Sbjct: 240 L 240 >gi|169260111|gb|ACA51941.1| BovR [Streptococcus equinus] Length = 198 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L ++ EG EIA L IS T+ N+I +I+ K + AI A Sbjct: 136 ELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKA 191 >gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 242 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N++ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|221126751|ref|XP_002164776.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 202 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A++F V + +LT E L + EG TS EIA+ L IS TV + ++ K Sbjct: 119 ASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENLRSKLG 178 Query: 230 TKTRSGAIAYAVR 242 + + AYA+R Sbjct: 179 IRNSAEMAAYAIR 191 >gi|111221722|ref|YP_712516.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111149254|emb|CAJ60939.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 181 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E L I+EG T+ +IA + ++ TV NY++S++ K ++R+ A +A R N Sbjct: 122 LTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLAKLGLESRTQAAVFATRLN 180 >gi|110833650|ref|YP_692509.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110646761|emb|CAL16237.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 224 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G FE LT RE + L + G ++ EIA + +S +TV ++ S+ RK K+R G + + Sbjct: 154 GHIFESLTSRERQMLDHVVRGMSNHEIADAICLSTHTVKAHLQSLYRKVGVKSRVGVMRW 213 Query: 240 AVRNNI 245 N++ Sbjct: 214 VHENHL 219 >gi|83716715|ref|YP_439828.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|167578289|ref|ZP_02371163.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616427|ref|ZP_02385059.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142978|ref|ZP_05591240.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|83650540|gb|ABC34604.1| DNA-binding response regulator, LuxR family [Burkholderia thailandensis E264] Length = 214 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 33/75 (44%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N+ D L+ RE E ++ G T EIA LGIS TV Y A ++ K Sbjct: 136 NLHSPSDADAPPHERLSKREFEVFRHLAAGDTPAEIAQALGISAKTVRIYKAHVLDKLEL 195 Query: 231 KTRSGAIAYAVRNNI 245 + + YAV + I Sbjct: 196 PNETALVRYAVAHRI 210 >gi|327193774|gb|EGE60651.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 223 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I G+++ EIA +LGIS T + ++ +K T +G I YA+ + I Sbjct: 150 LTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHGI 209 >gi|254292885|ref|YP_003058908.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041416|gb|ACT58211.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC 49814] Length = 249 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE +CL +++ G D I L I+ TVN +I + K T + A+A A+R N Sbjct: 189 LTDRERDCLAFLARGLRPDRIGDELSIATVTVNMHIRNARYKLKATTNAHAVAKAIRLNF 248 Query: 246 V 246 + Sbjct: 249 I 249 >gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 225 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +++G +++EIA L + +TV +++A M K ++R A+ +A +N I Sbjct: 161 LTPRELDILLLLAQGMSNEEIARELYLEVSTVKSHLARAMPKLGVRSRLQAVVWAYQNGI 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|221639297|ref|YP_002525559.1| response regulator [Rhodobacter sphaeroides KD131] gi|221160078|gb|ACM01058.1| Response regulator [Rhodobacter sphaeroides KD131] Length = 226 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ + L I EG+ + +IA L I+ TV ++ +IMRK ++R+ A+ Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210 >gi|218782824|ref|YP_002434142.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218764208|gb|ACL06674.1| two component transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 219 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E ++EG T+ +IA +L IS TV+ + ++M+K + +A++N I Sbjct: 156 LTQREKEVFQLVAEGNTNQQIADLLFISPKTVDKHRTNLMKKLDLHSAREVSNFALKNGI 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|159039748|ref|YP_001539001.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918583|gb|ABW00011.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 270 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EGK++ EI L +S +TV + + RK + R+ A+A R + Sbjct: 209 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 268 Query: 246 V 246 V Sbjct: 269 V 269 >gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum] Length = 245 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+IL I TV +I ++++K AI + Sbjct: 180 FSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236 >gi|66046995|ref|YP_236836.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63257702|gb|AAY38798.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|330971104|gb|EGH71170.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 89 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L + +G T+ EIA L IS TV ++++S++RK +TR+ +A V Sbjct: 10 VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65 >gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G +LT RE+E L I+ G T+ EIA L +S TV ++ A I +K +R+ + YA Sbjct: 153 GPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYA 212 Query: 241 VRNNIV 246 + + ++ Sbjct: 213 LDHGLM 218 >gi|302547687|ref|ZP_07300029.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465305|gb|EFL28398.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 235 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + ++ G+T++E+A L ++ +TV ++ ++ RK A + R A+A N I Sbjct: 170 LTQRELDVVRRVARGRTNEEVAADLYVTLSTVKTHLGNVQRKLAARNRVEIAAWAWENGI 229 >gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K +T RE++ + ++ G T+ EIA +GIS +TV ++ I +K +RS A+ Sbjct: 171 KACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVHSRSEAV 226 >gi|120402572|ref|YP_952401.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119955390|gb|ABM12395.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length = 281 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE++ L ++ G T+ E A L + TV +Y+ S K T+TR A++ A R ++ Sbjct: 220 LTGRELDVLAQVALGCTNAEAAQRLSLKTETVKSYLRSAATKLGTRTRYEAVSRARRLHL 279 Query: 246 V 246 + Sbjct: 280 I 280 >gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] Length = 236 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++G ++ I L IS TV N++++I++K R+ A+ +++N Sbjct: 173 LTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKN 230 >gi|53719568|ref|YP_108554.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|53725272|ref|YP_102799.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|67641378|ref|ZP_00440158.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|76808631|ref|YP_333277.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|83719477|ref|YP_443124.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|121601485|ref|YP_992877.1| LuxR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124384920|ref|YP_001026216.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126441031|ref|YP_001058739.1| PAS [Burkholderia pseudomallei 668] gi|126449316|ref|YP_001080511.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126454121|ref|YP_001065994.1| sensory box transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134282296|ref|ZP_01769001.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167003157|ref|ZP_02268947.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167582133|ref|ZP_02375007.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167620292|ref|ZP_02388923.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|167738866|ref|ZP_02411640.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167816087|ref|ZP_02447767.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167824461|ref|ZP_02455932.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167845993|ref|ZP_02471501.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167894572|ref|ZP_02481974.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167902974|ref|ZP_02490179.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167911212|ref|ZP_02498303.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167919235|ref|ZP_02506326.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217423758|ref|ZP_03455259.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226199648|ref|ZP_03795201.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237812005|ref|YP_002896456.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242314793|ref|ZP_04813809.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254177713|ref|ZP_04884368.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254180014|ref|ZP_04886613.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254188573|ref|ZP_04895084.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254197396|ref|ZP_04903818.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254199746|ref|ZP_04906112.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254206070|ref|ZP_04912422.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254258286|ref|ZP_04949340.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254297849|ref|ZP_04965302.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254358442|ref|ZP_04974715.1| transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|257139354|ref|ZP_05587616.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis E264] gi|52209982|emb|CAH35955.1| putative LuxR-family regulatory protein [Burkholderia pseudomallei K96243] gi|52428695|gb|AAU49288.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76578084|gb|ABA47559.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|83653302|gb|ABC37365.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] gi|121230295|gb|ABM52813.1| transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] gi|124292940|gb|ABN02209.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126220524|gb|ABN84030.1| PAS domain protein [Burkholderia pseudomallei 668] gi|126227763|gb|ABN91303.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126242186|gb|ABO05279.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134246334|gb|EBA46423.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147749342|gb|EDK56416.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147753513|gb|EDK60578.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148027569|gb|EDK85590.1| transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|157807369|gb|EDO84539.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157936252|gb|EDO91922.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160698752|gb|EDP88722.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169654137|gb|EDS86830.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|184210554|gb|EDU07597.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217393616|gb|EEC33637.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225928234|gb|EEH24268.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237504139|gb|ACQ96457.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238522301|gb|EEP85746.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|242138032|gb|EES24434.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243061251|gb|EES43437.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|254216975|gb|EET06359.1| sensory box transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 181 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|325923039|ref|ZP_08184737.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546480|gb|EGD17636.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 235 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGIS TV ++ I++K K R+ A YAV + Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVHAGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|160888907|ref|ZP_02069910.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492] gi|270293670|ref|ZP_06199872.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479365|ref|ZP_07938499.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|156861806|gb|EDO55237.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492] gi|270275137|gb|EFA20997.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904439|gb|EFV26259.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 220 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 KD LT E L I+ GKT+ EIA +S +TVN++ +I RK A YA+ Sbjct: 149 KDDLLTTAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 208 Query: 242 RNNIV 246 + IV Sbjct: 209 KAGIV 213 >gi|157374068|ref|YP_001472668.1| two component LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316442|gb|ABV35540.1| two component transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 209 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 33/49 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ L ++EGK++ I+ +L IS TV ++ +++RK K+R+ Sbjct: 152 LTPRELQILQQVAEGKSNRVISELLHISEGTVKVHVKNLLRKANAKSRT 200 >gi|325922114|ref|ZP_08183907.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325547411|gb|EGD18472.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 923 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 36/58 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGLL 909 >gi|325926289|ref|ZP_08187643.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] gi|325543323|gb|EGD14752.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] Length = 923 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 36/58 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGLL 909 >gi|239980938|ref|ZP_04703462.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291452801|ref|ZP_06592191.1| luxR family two component system response regulator [Streptomyces albus J1074] gi|291355750|gb|EFE82652.1| luxR family two component system response regulator [Streptomyces albus J1074] Length = 221 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S TV NY++S + K + R Sbjct: 150 AADAIAAGDSPLTAREAEVLELAADGAPVAEIAERAALSPGTVRNYLSSAVTKLGAENRH 209 Query: 235 GAI 237 A+ Sbjct: 210 SAV 212 >gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++++G ++ +IA L +S TV N++ + +RK R YA+ Sbjct: 161 KLTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQG 220 Query: 245 I 245 + Sbjct: 221 L 221 >gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] Length = 213 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE CL W + GK++ + A I+ +SR TV + + RK T A+A + +I Sbjct: 151 LTQRERICLQWAARGKSALDTAEIINVSRRTVVFHTQNAKRKLGVATVQQAVAKGLAYDI 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas entomophila L48] Length = 235 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L W + G+ +IA LG+S TV N++ + R+ T + AI A+ + + Sbjct: 174 LSERERQVLAWTAAGQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGV 233 Query: 246 V 246 + Sbjct: 234 L 234 >gi|329903746|ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] gi|327548226|gb|EGF32926.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] Length = 215 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + LT I+ GKT +IA L +S T++ Y + +++K + + YA+RN++ Sbjct: 154 LSDREYQTLTMIASGKTVSDIASELVLSVKTISMYRSRLLQKMKLRHNAELTHYAIRNHL 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ TV ++ I+ K + R+ A +A + Sbjct: 159 DLTERETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVFAYESG 218 Query: 245 IV 246 +V Sbjct: 219 LV 220 >gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78] gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78] gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 226 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 165 LTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 223 >gi|223940236|ref|ZP_03632096.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891123|gb|EEF57624.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 222 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 12/100 (12%) Query: 150 KGRIILRDRLWEI------------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 KGR D+L E L+A F GK+ L+ RE E L + Sbjct: 122 KGRSATGDKLLEALRDAGRGGSPLNSLIARKIVQHFHHQPSRSGKEHPLSVREREVLELL 181 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 S+G EIA +LG++ TV + +I K +R+ A+ Sbjct: 182 SKGLPYKEIADMLGVNIETVRKHCHNIYEKLQVSSRTEAV 221 >gi|126462296|ref|YP_001043410.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126103960|gb|ABN76638.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17029] Length = 226 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ + L I EG+ + +IA L I+ TV ++ +IMRK ++R+ A+ Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210 >gi|94312507|ref|YP_585717.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356359|gb|ABF10448.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 228 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 164 LLAAYQA----NMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGI 212 LLAA QA +F S + G + LT RE + L I G+ + +IAV LG+ Sbjct: 130 LLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHGIGRGQANKDIAVQLGV 189 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 S TV + ++ RK + R+ + YAV+ Sbjct: 190 SVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 220 >gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++G+++ EIA L ++ +TV +++ I+ K + R+ A +A Sbjct: 161 ELTERENEVLVLVAQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLRDRTQAAVFAYEAR 220 Query: 245 IV 246 +V Sbjct: 221 LV 222 >gi|229488432|ref|ZP_04382298.1| transcriptional regulator, LuxR family protein [Rhodococcus erythropolis SK121] gi|229323936|gb|EEN89691.1| transcriptional regulator, LuxR family protein [Rhodococcus erythropolis SK121] Length = 921 Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L + G EIA L +S NT+ +++ ++ RK +R A+A A R+N Sbjct: 855 QLTKREMDVLVELGLGIPIGEIARRLFVSNNTLKSHLRALYRKLGAHSREEAVAAAHRHN 914 Query: 245 IV 246 ++ Sbjct: 915 LL 916 >gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 216 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 16/73 (21%), Positives = 45/73 (61%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +++ + + ELT E++ + +++G ++ EIA L +S+ T+ +++++++ KT+ R Sbjct: 144 EAHKIQVPSNVELTPTELKVIQLVAQGLSNREIASKLNVSQRTIESHVSNMLNKTSLHNR 203 Query: 234 SGAIAYAVRNNIV 246 + +A+ +N+ Sbjct: 204 TELARWAMESNMA 216 >gi|326799448|ref|YP_004317267.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326550212|gb|ADZ78597.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 209 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 163 GLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 G Y NM Y + KD +L RE E L T +IA + +S T++ Y Sbjct: 125 GFYNTYVTNM--CYQEMFNKDSIDLKDREREFLELACSDLTYQQIASKMFLSIKTIDGYR 182 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A++ K K+R G + A+R N++ Sbjct: 183 AALFEKFQVKSRVGLVLEAIRQNVI 207 >gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 28/42 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LTGRE+E L ++EG T+ EIA L IS TV + +++M K Sbjct: 172 LTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMMEK 213 >gi|167836859|ref|ZP_02463742.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 181 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 211 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L I EG T+ +IA L ++ TV NY+ +++ K + R+ A A+ R Sbjct: 150 LTERERKVLELIGEGLTNRQIAERLFLAEKTVKNYVTAVLAKLGMERRTQAAAWVARRQ 208 >gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 245 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ + + Sbjct: 184 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRL 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|332978107|gb|EGK14844.1| nitrate/nitrite response regulator protein NarL [Psychrobacter sp. 1501(2011)] Length = 219 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE++ + I++G+++ I LGIS +TV ++ I+ KT +TR +AV Sbjct: 159 LTSRELQVVKMIAKGQSNKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214 >gi|167719863|ref|ZP_02403099.1| sensory box transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] Length = 181 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 242 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N++ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|84502250|ref|ZP_01000398.1| transcriptional regulator, LuxR family/sensory box protein [Oceanicola batsensis HTCC2597] gi|84389610|gb|EAQ02329.1| transcriptional regulator, LuxR family/sensory box protein [Oceanicola batsensis HTCC2597] Length = 200 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 LT RE E ++ +S+G TS EIA+ L +S TV Y A +++K SG Sbjct: 132 LTRREREIISHLSDGLTSKEIAIKLELSHRTVEVYRAKLLKKFGVSNSSG 181 >gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 233 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E L I EG T+ +IA + ++ TV NY++S++ K + R+ A +A ++++ Sbjct: 172 LTEQERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQRRTQAALFAAKHHL 231 >gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 243 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +I+ G+++ EIA L ++ +TV ++ +++RK +R A +AV N Sbjct: 177 KLSPREREILRFIARGQSNKEIARALELAESTVKIHVQNMLRKLNLSSRVQAAVFAVENG 236 Query: 245 I 245 + Sbjct: 237 L 237 >gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 199 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+E L IS+ ++++I+ L ISR TV+ ++++I K +R GA+ A++ + Sbjct: 139 LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIKLKL 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 224 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++G ++ EIA L ++ TV ++ I++K + R+ A +A Sbjct: 156 ELTHRETEVLALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETG 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|127514122|ref|YP_001095319.1| LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126639417|gb|ABO25060.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 220 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE + +S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 155 KLTTRERTIIQLVSSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 210 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+S D+ LT +EV L I+ G + EIA LGI+ TV +++ ++ K + Sbjct: 138 FRSPDMRE----HLTPKEVLTLQLIARGHANREIAQELGITEATVKTHVSRLLGKLGLTS 193 Query: 233 RSGAIAYAVRNNI 245 R+ A YA++ + Sbjct: 194 RTQAALYALKAGL 206 >gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 231 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F ++ + +L+ RE+E L + G+T+ EIA L IS TV ++A+I K + Sbjct: 153 FSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGS 212 Query: 233 RSGAIAYAVRNN 244 R+ A+ + ++ Sbjct: 213 RTEAVLHGIKRG 224 >gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++G ++ +IA L +S TV N++ + +RK R YA+ N Sbjct: 161 QLTPRETEVLRLVAKGLSAKQIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENG 220 Query: 245 I 245 + Sbjct: 221 L 221 >gi|293605159|ref|ZP_06687548.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292816415|gb|EFF75507.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 218 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+ G+ + +IA LG+S TV + +I RK ++ I YAV N Sbjct: 158 LTQRERDVLRHIASGQANKQIAHALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|254293153|ref|YP_003059176.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041684|gb|ACT58479.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC 49814] Length = 248 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 KD +LT R++E L + G+T + A LG+S V ++ I ++ +T S AI A Sbjct: 177 KDHDLTKRQIEVLQAKANGQTDKQTADRLGVSVKAVEGHLTKIRKQMNARTTSQAIGLAR 236 Query: 242 RNNIV 246 ++ Sbjct: 237 GKGLI 241 >gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] Length = 241 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE L W + GK+ EIA I GI TV ++A++++K T A+ A R Sbjct: 176 LTLRERTVLKWAAMGKSYSEIADICGIRERTVKYHMANVVQKLDVSTAKQAVIVASR 232 >gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 242 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N++ Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240 Query: 246 V 246 V Sbjct: 241 V 241 >gi|163746352|ref|ZP_02153710.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161380237|gb|EDQ04648.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 251 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R++E L W+ +GKT+ +IA+++G++ TV ++ + +T + A+ A N Sbjct: 186 LTRRQLEVLEWVGDGKTTQDIALLMGLTAATVEKHLRLAREALSVETTAQAVLKAAFAN 244 >gi|153802230|ref|ZP_01956816.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|124122254|gb|EAY40997.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] Length = 214 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y F+S+ D LT RE++ L + G ++ +IA L IS TV +++ I Sbjct: 136 LLHYYRYAFQSHQAQASVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K K R AIA+ +N Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212 >gi|330949863|gb|EGH50123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 89 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE E L + +G T+ EIA L IS TV ++++S++RK +TR+ +A V Sbjct: 10 VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65 >gi|322437524|ref|YP_004219614.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165417|gb|ADW71120.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 216 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E + +++G TS E A L IS TV ++ +I RK + + + + YA+RN Sbjct: 152 QLTVREREVMRLLADGMTSKEAAARLCISTRTVESHRINISRKMSFGSVADLVRYAIRNG 211 Query: 245 I 245 I Sbjct: 212 I 212 >gi|317489677|ref|ZP_07948181.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316911271|gb|EFV32876.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 534 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +DF LT RE E L +I+ G+++ IA L +S NT+ + I+ KT ++ I Sbjct: 471 AEDFSLTRREAELLPFIARGRSARVIADALFVSENTIRTHTRRILEKTDLHSKQQVI 527 >gi|167629282|ref|YP_001679781.1| two-component transcriptional response regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592022|gb|ABZ83770.1| two-component transcriptional response regulator, putative [Heliobacterium modesticaldum Ice1] Length = 464 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E I+EG TS EIA IS NTV ++I +I RK T+ Sbjct: 403 LTEREYEIALMIAEGLTSREIAEKTFISLNTVKSHIKNIYRKIGVSTK 450 >gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++ G + EIA L + TV +++ ++ K + R A+ +A + Sbjct: 165 ELTPREHEVLVLVASGANNAEIAAALRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHG 224 Query: 245 IV 246 +V Sbjct: 225 VV 226 >gi|153008009|ref|YP_001369224.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151559897|gb|ABS13395.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 277 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E L W +EGKT EI++ILG++ TV ++ + K ++ A+ A+R++ Sbjct: 15 LTSQERIVLYWTAEGKTRWEISIILGVAETTVVTHLRNSRIKLGATNKTHAVVEAIRHS 73 >gi|78049092|ref|YP_365267.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037522|emb|CAJ25267.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 923 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 36/58 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGLL 909 >gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 196 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 F LT REVE + I+ G ++ EIA LG+ TV ++ ++ RK + R+ A Sbjct: 134 FSLTPREVEVVRGIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEARNRTHA 186 >gi|150389353|ref|YP_001319402.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949215|gb|ABR47743.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 220 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L+ RE+E + EG + EIA L I++ T NYI+SI K + R+ A+ + Sbjct: 160 KLSEREIEIAKLMLEGLNNKEIASELFITQGTAKNYISSIYSKIGVRDRTNAVLF 214 >gi|325918348|ref|ZP_08180482.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535427|gb|EGD07289.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 922 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 37/58 (63%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S+NTV ++ ++ RK ++R A+A A++ ++ Sbjct: 851 RELEVLAQLARGYSNKQIARHLHLSQNTVKFHLKNLYRKLDARSRESALAQALQRGVL 908 >gi|322377956|ref|ZP_08052444.1| putative DNA-binding response regulator VraR [Streptococcus sp. M334] gi|321281132|gb|EFX58144.1| putative DNA-binding response regulator VraR [Streptococcus sp. M334] Length = 201 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+ L I + ++++IA L +SR TV+ ++++I K +R GA+ A+R N+ Sbjct: 139 LTDMELSVLELIVKEYSNEKIANSLFVSRRTVDTHVSNICSKLGVTSRVGAVREAIRLNL 198 Query: 246 V 246 V Sbjct: 199 V 199 >gi|320450528|ref|YP_004202624.1| two component transcriptional regulator, LuxR family [Thermus scotoductus SA-01] gi|320150697|gb|ADW22075.1| two component transcriptional regulator, LuxR family [Thermus scotoductus SA-01] Length = 209 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L +++G + E+A L IS TV Y M K K+RS + YAV+ Sbjct: 147 LSPREEEVLRLLAKGLSHKEVAEHLSISEKTVATYRERGMEKLGLKSRSDLLRYAVKRG 205 >gi|298244378|ref|ZP_06968184.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551859|gb|EFH85724.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 212 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ +++ L ++++G +S EIA L +S NT+ Y+ I+ + K R+ A+ AV++ Sbjct: 152 LSSQQLVILRFVAQGLSSREIAKKLYLSENTIKGYVQEILHRLNVKNRTEAVMVAVKHG 210 >gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 213 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G ++ EIA L IS TV ++ + RK K R+ A+A A I Sbjct: 152 LSAREREVLELVAKGTSNREIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGI 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K+ E LTGRE E + +++G ++ EIA L +S TV ++ I+ K + R + A Sbjct: 152 KELERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLA 211 Query: 241 VRNNIV 246 +V Sbjct: 212 YETGLV 217 >gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I +G ++ EIA L I+ TV ++ +I+ K + R+ A A++ Sbjct: 146 ELSEREIEVLQRIVKGLSNKEIAGHLFITEATVKLHVGNILTKLGVQDRTQASTVAIQRG 205 Query: 245 IV 246 IV Sbjct: 206 IV 207 >gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 222 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + Sbjct: 157 LTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|284042075|ref|YP_003392415.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] gi|283946296|gb|ADB49040.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] Length = 758 Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LTG E+ L +++ T EIA L ISRNT SI RK +RS A+ AV Sbjct: 683 LTGAEIRLLPYLATHLTFPEIAGRLFISRNTAKTEAISIYRKLGASSRSEAVERAV 738 >gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] Length = 204 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + + ++ +G ++A Q N D H +LT RE + L ++EGK++ EIA L + Sbjct: 117 MAMGEQYLPVGFMSAEQPN-----DTHPMAK-KLTERERQVLKGLTEGKSNKEIARDLDL 170 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 S T+ ++ ++ RK R+ A A A R Sbjct: 171 SEPTIKLHVKTLYRKVGVSNRTQA-AMAAR 199 >gi|148654853|ref|YP_001275058.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566963|gb|ABQ89108.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 227 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ELT RE+E L I+EG + EIA L I+ NT ++++I+ K R Sbjct: 153 ELTSRELEILQLIAEGLGNREIAARLDITYNTAMKHVSNILAKLKVSNR 201 >gi|21230300|ref|NP_636217.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769706|ref|YP_244468.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992921|ref|YP_001904931.1| Putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21111849|gb|AAM40141.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575038|gb|AAY50448.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734681|emb|CAP52891.1| Putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 235 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGIS TV ++ I++K K R+ A YAV + Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVHAGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|332558318|ref|ZP_08412640.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276030|gb|EGJ21345.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 226 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ + L I EG+ + +IA L I+ TV ++ +IMRK ++R+ A+ Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210 >gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 204 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G T+ EIA L IS+ TV ++ I K R+ A+A A + Sbjct: 143 LSARELEILQAVATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQL 202 Query: 246 V 246 + Sbjct: 203 I 203 >gi|207722498|ref|YP_002252934.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2] gi|206587679|emb|CAQ18261.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2] Length = 252 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E I +G+++ EIA ++ S +TV +Y++SIM KT + R Sbjct: 183 LTEREREVALLIGQGRSNAEIAQVVCRSESTVKHYLSSIMDKTGCENR 230 >gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1] gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1] Length = 213 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I++ K + EIA +L IS NTV ++ ++ K + S + YA+++ Sbjct: 150 KLTPREIDILKLIAQNKKTKEIAELLFISVNTVQSHKKNLYSKLNIHSVSELVTYAIQHK 209 Query: 245 IV 246 + Sbjct: 210 FI 211 >gi|157377077|ref|YP_001475677.1| LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319451|gb|ABV38549.1| transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 221 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTKRERTIIQLVSSGARNKEIAHNLCISEHTVKAHISSIFRKTQSRNR 203 >gi|119025073|ref|YP_908918.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764657|dbj|BAF38836.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 243 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE + + G+T+ ++ LG+S NTV Y M K KTR AIA Sbjct: 180 LSDRETAIIVRYARGQTTLQVGECLGLSENTVKTYTKRAMAKLGAKTRGQAIA 232 >gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] Length = 232 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A M K+ + +E LT RE E L +S+G T EIA L IS TV + A++M Sbjct: 133 AIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK + ++ + YA++ I+ Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213 >gi|300694626|ref|YP_003750599.1| transcription regulator protein, luxr family [Ralstonia solanacearum PSI07] gi|299076663|emb|CBJ36001.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] Length = 252 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E I +G+++ EIA ++ S +TV +Y++SIM KT + R Sbjct: 183 LTEREREVALLIGQGRSNAEIAQLVCKSESTVKHYLSSIMDKTGCENR 230 >gi|288803368|ref|ZP_06408801.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] gi|288334188|gb|EFC72630.1| transcriptional regulator, LuxR family domain protein [Prevotella melaninogenica D18] Length = 198 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE+E L+ I +G + EIA L IS TV + +IM K K+ S YAV Sbjct: 129 KNKILSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 188 >gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L +S G ++ E+A L IS TV ++ I +K +TR+ A+ A Sbjct: 145 LSARELEILRALSSGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVA 199 >gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 222 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G D L+ RE + L ++ G+T+ EIA L IS TV ++A + K R+ A+ Sbjct: 138 GSDVVLSDRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAV 194 >gi|256829663|ref|YP_003158391.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578839|gb|ACU89975.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 219 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT----RSGAIAY 239 LT RE++ + I +GK S EIA IL IS TV+ + ++I++K T R G + + Sbjct: 155 LTPREIDVVKLIFKGKKSREIAEILAISVKTVDKHRSNILQKIGIHTFNELRQGGMYF 212 >gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG +++EIA L + +TV +++A +M K K+R A +A ++ + Sbjct: 157 LTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLARMMPKLGVKSRLQAAVWAYQSGL 216 Query: 246 V 246 + Sbjct: 217 I 217 >gi|323138697|ref|ZP_08073763.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322396052|gb|EFX98587.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 229 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E L ++ GK EIA IL IS TV N + RK ++++ + AV N + Sbjct: 165 LNSREIEILRNLANGKDMAEIAYILKISYKTVANNCVLLKRKLGARSKADLLRIAVENKV 224 >gi|319784914|ref|YP_004144390.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170802|gb|ADV14340.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 908 Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E L +++EG ++ +IA+ L +S TV ++ +I K A R A+ A Sbjct: 839 QLTQREAELLRYLTEGMSNRDIALALSVSETTVKWHLKNIFGKLAVTNRVQAVRAA 894 >gi|190349640|gb|ACE75883.1| quorum sensing response regulator [Serratia plymuthica] Length = 248 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E + W S GK+ EIA+ILGI T+ +I + ++K AI V Sbjct: 179 FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAIRLGVE 235 >gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] Length = 212 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REV L ++ G ++ EIA L ++ TV NY+++I+ K T+ R+ A+ A+ I+ Sbjct: 155 REVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 212 >gi|294630195|ref|ZP_06708755.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833528|gb|EFF91877.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 207 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S TV NY++S + K + R Sbjct: 136 AADAISAGDSPLTAREAEVLELAADGAPVTEIAERAALSAGTVRNYLSSAVTKLGAENRH 195 Query: 235 GAIAYA 240 A+ A Sbjct: 196 AAVRLA 201 >gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4] gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4] Length = 225 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E+T RE E L ++ G ++DEIA L IS T +++ IM K + R+ + A + Sbjct: 156 EVTEREREVLALVAGGLSNDEIAAHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESG 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|157368315|ref|YP_001476304.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157320079|gb|ABV39176.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 248 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E + W S GK+ EIA+ILGI T+ +I + ++K AI V Sbjct: 179 FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAIRLGVE 235 >gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] Length = 218 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%) Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVH--WGKDFE---LTGREVECLTWISEGKTS 203 R++L D+LW +I A + F +H D E LT RE ++ +S G + Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGSKN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EIA L IS +TV ++ S RKT + R +++A +N Sbjct: 173 KEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|146277185|ref|YP_001167344.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555426|gb|ABP70039.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 226 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ + L I EG+ + +IA L I+ TV ++ +IMRK ++R+ A+ Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210 >gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 153-1] Length = 230 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A ++ I Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRI 223 Query: 246 V 246 + Sbjct: 224 I 224 >gi|311106078|ref|YP_003978931.1| response regulator 7 [Achromobacter xylosoxidans A8] gi|310760767|gb|ADP16216.1| response regulator 7 [Achromobacter xylosoxidans A8] Length = 215 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+ G+ + +IA LG+S TV + +I RK ++ I YAV N Sbjct: 155 LTQRERDVLRHIASGEANKQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|290475594|ref|YP_003468482.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus bovienii SS-2004] gi|289174915|emb|CBJ81716.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus bovienii SS-2004] Length = 211 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L ISEG T+ EIA L IS TV + ++++K +++R A +R+ Sbjct: 147 KLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKSRSRLEATIIYLRH 205 >gi|300776299|ref|ZP_07086157.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300501809|gb|EFK32949.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 225 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 +A + ++F++ D EL+ RE + + I + T++EI L IS TV ++ I+ Sbjct: 147 SAKKKSLFETED-------ELSEREKDVVKLICQELTNNEIGEKLFISPRTVESHRQRIL 199 Query: 226 RKTATKTRSGAIAYAVRNNI 245 K K G + YA+ NNI Sbjct: 200 EKIGAKNTVGIVIYAIVNNI 219 >gi|26987312|ref|NP_742737.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gi|24981960|gb|AAN66201.1|AE016248_4 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] Length = 258 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ R++E + +GKT+ +IA LGI+ NTV Y++ ++R T R+ Sbjct: 189 KLSPRQLEVARLVGKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 238 >gi|289643816|ref|ZP_06475923.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289506369|gb|EFD27361.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 115 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH + LT +E L I+EG T+ +IA L ++ TV NY++S++ K ++R+ A Sbjct: 48 VHDERLATLTEQERRILALIAEGLTNRQIANRLFLAEKTVKNYVSSLLAKLGLESRTQAA 107 Query: 238 AYAVR 242 +A + Sbjct: 108 VFATK 112 >gi|271964642|ref|YP_003338838.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507817|gb|ACZ86095.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 325 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELTGRE+E +T ++ G ++ +IA L +S TV ++ I K ++R+ Sbjct: 259 YELTGREIEVITRVALGDSNPQIAAALVLSVRTVTTHLEHIFTKLGCESRT 309 >gi|257790215|ref|YP_003180821.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325830433|ref|ZP_08163890.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|257474112|gb|ACV54432.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325487900|gb|EGC90338.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 534 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +DF LT RE E L +I+ G+++ IA L +S NT+ + I+ KT ++ I Sbjct: 471 AEDFSLTRREAELLPFIARGRSARVIADALFVSENTIRTHTRRILEKTDLHSKQQVI 527 >gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE L I G ++ EIA L ++ TV Y+++I+ K A R+ A YA+++ Sbjct: 150 LTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGYVSTILTKLAVADRTQAALYAIKHG 208 >gi|77463440|ref|YP_352944.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|16904149|gb|AAL30775.1|AF435819_1 response regulator [Rhodobacter sphaeroides] gi|77387858|gb|ABA79043.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] Length = 226 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ + L I EG+ + +IA L I+ TV ++ +IMRK ++R+ A+ Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210 >gi|121603831|ref|YP_981160.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120592800|gb|ABM36239.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 210 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L A Q N K H +L+ RE + +++G+T+ +IA L +S TV+ Y + Sbjct: 132 LLAQQLNRPKDVAAHE----QLSEREFQVFLKLAKGETAGDIAKALSLSVKTVSTYRTRV 187 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 M K + + S YA++N ++ Sbjct: 188 MEKMSLASNSDLTYYALKNKLI 209 >gi|84684327|ref|ZP_01012229.1| DNA-binding response regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84668080|gb|EAQ14548.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 225 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT ++ L I EGK + +IA L I+ TV ++ +IMRK ++R+ A+ A Sbjct: 155 LTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIA 209 >gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 221 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA L ++ TV ++ ++ K + R+ AI YA + Sbjct: 154 LTAREREVLILVAKGLSNQEIAERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGL 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|251777972|ref|ZP_04820892.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082287|gb|EES48177.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 243 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E + I+ G T+ EI + L IS TV ++ +I+RK K R + + N+ Sbjct: 181 KLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIFCKSNS 240 Query: 245 I 245 + Sbjct: 241 M 241 >gi|241763752|ref|ZP_04761799.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241366971|gb|EER61367.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 208 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 173 FKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 F Y +D +LTGRE + L I G+ + +IA LGIS TV + A+IM K Sbjct: 130 FAGYQQAASRDALLSKLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLN 189 Query: 230 TKTRSGAIAYAVRNN 244 T + + A+ N Sbjct: 190 ANTVADLLKIALGQN 204 >gi|255039009|ref|YP_003089630.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254951765|gb|ACT96465.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 267 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +LT RE E L I +GK S EI+ +L IS +TVN + I+ K Sbjct: 204 IKLTSREKEILGMIGKGKLSKEISALLDISVHTVNTHRQRILEK 247 >gi|239815151|ref|YP_002944061.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|319794387|ref|YP_004156027.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|239801728|gb|ACS18795.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|315596850|gb|ADU37916.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 210 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + L +R+ E A Q S D K LTGRE + L I G+ + +IA LGI Sbjct: 116 VTLVERMLEHARGAFTQHQQSASRDALLSK---LTGREAQVLERIVAGRLNKQIADDLGI 172 Query: 213 SRNTVNNYIASIMRKTATKT 232 S TV + A+IM K T Sbjct: 173 SIKTVEAHRANIMEKLNANT 192 >gi|209964999|ref|YP_002297914.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] gi|209958465|gb|ACI99101.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] Length = 214 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT R+ + L + EGK++ +IA LG+S TV ++ ++MR + R+ A+ Sbjct: 155 LTQRQRDVLRCLREGKSNKQIAYELGLSEGTVKIHVTAVMRSLGVRNRTQAV 206 >gi|197122484|ref|YP_002134435.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196172333|gb|ACG73306.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] Length = 210 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E ++ ++ EIA L +S TV+ Y + I+ K A ++ + + YAVR+ Sbjct: 148 QLSPRELEIFLQLAAARSVSEIAGRLQLSVKTVSTYRSRILEKMALRSNAELMQYAVRHG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|170725332|ref|YP_001759358.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810679|gb|ACA85263.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 209 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 33/49 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ L ++EGK++ I+ +L IS TV ++ +++RK K+R+ Sbjct: 152 LTPRELQILEQVAEGKSNRMISELLHISEGTVKVHVKNLLRKGHAKSRT 200 >gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 232 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A M K+ + +E LT RE E L +S+G T EIA L IS TV + A++M Sbjct: 133 AIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK + ++ + YA++ I+ Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213 >gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++ EIA L +S TV ++ +++ K + R+ A+ A + + Sbjct: 171 LTGREEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYESGL 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v] Length = 215 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIAAVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] Length = 231 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYA 212 >gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] Length = 215 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE++ L + G ++ +IA L IS TV +++ I +K + K R AIA+A Sbjct: 154 DLTSREIQILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWA 209 >gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E LT I+ G ++ EIA L ++ TV ++ I+ K + R+ A +A + Sbjct: 158 DLTERETEVLTLIASGLSNAEIARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|237846560|gb|ACR22888.1| SpsR [Serratia plymuthica] Length = 248 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E + W S GK+ EIA+ILGI T+ +I + ++K AI V Sbjct: 179 FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAIRLGVE 235 >gi|291298491|ref|YP_003509769.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567711|gb|ADD40676.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ GK++ EI L ++ +T+ + RK + R+ A+A A R NI Sbjct: 73 LSEREHQVLLGIAGGKSNAEIGRELYVTEDTIKTHARRAYRKLGARDRAHAVALAFRQNI 132 Query: 246 V 246 + Sbjct: 133 L 133 >gi|196232652|ref|ZP_03131504.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223414|gb|EDY17932.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 220 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG+ + ++ L IS T + A IM K + + + YA+RN + Sbjct: 158 LTPREREILQLLAEGRKNRDVGKALNISVKTAETHRARIMAKLGIDSVADLVRYAIRNGL 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 212 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 168 YQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 YQ F DV + ELT RE++ L + +G ++ +++ L IS TV ++ Sbjct: 124 YQGKRFIPADVAMKLAERIESDELTAREIDVLEMMVQGSSTAKLSEALHISEGTVKFHVN 183 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I++K R+ A+ A+ IV Sbjct: 184 NILQKLNAHDRTQAVVTALHRGIV 207 >gi|188590713|ref|YP_001921256.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska E43] gi|188500994|gb|ACD54130.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska E43] Length = 243 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E + I+ G T+ EI + L IS TV ++ +I+RK K R + + N+ Sbjct: 181 KLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIFCKSNS 240 Query: 245 I 245 + Sbjct: 241 M 241 >gi|170694246|ref|ZP_02885401.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170140986|gb|EDT09159.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 216 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ G+T EIA L +S T++ Y I+ K + + YAVR+ + Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSAKTISTYKTRILEKMQMPHEAALVRYAVRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|241554181|ref|YP_002979394.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863487|gb|ACS61149.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 214 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I G+++ EIA LGI+ T + ++ +K T +G I YA+ + I Sbjct: 150 LTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGIATTAGLIRYALDHGI 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|158316741|ref|YP_001509249.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112146|gb|ABW14343.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 231 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I+EG T+ +IA + ++ TV NY++S++ K ++R+ A +A + Sbjct: 172 LTDQERRILALIAEGLTNRQIAARMFLAEKTVKNYVSSMLSKLGMESRTQAAVFATK 228 >gi|330966214|gb|EGH66474.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 92 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE + L + +G T+ EIA L IS TV ++++S++RK+ KTR+ +A V Sbjct: 13 VTIREQDVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKSQVKTRAELMARCV 68 >gi|291528659|emb|CBK94245.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale M104/1] Length = 218 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 33/53 (62%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 K ++++G+E+ + ++EG + EIA L +S TV NYI+ I+ K + R+ Sbjct: 155 KSYDISGKELSIIELVAEGLNNREIADELYLSEGTVRNYISVILEKLQLRDRT 207 >gi|229079021|ref|ZP_04211573.1| Response regulator [Bacillus cereus Rock4-2] gi|228704435|gb|EEL56869.1| Response regulator [Bacillus cereus Rock4-2] Length = 212 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|284992816|ref|YP_003411370.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066061|gb|ADB76999.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 253 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE++ LT +S+GK++ +I L +S +T+ + + RK K R+ A+A R Sbjct: 190 VSLSMREMQVLTGMSQGKSNAQIGRELYLSEDTIKTHARRLFRKLGAKDRAEAVATGFRR 249 Query: 244 NIV 246 ++ Sbjct: 250 GMM 252 >gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 223 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 164 LLAAYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+AA+Q A ++ + L+ RE E L I+ G ++ EIA L I+ TV + Sbjct: 138 LVAAFQSQGAPEPQAPEPDEAPASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIH 197 Query: 221 IASIMRKTATKTRSGAIAYA 240 + I+RK +R A YA Sbjct: 198 VQHILRKLGLSSRVQAAVYA 217 >gi|158422196|ref|YP_001523488.1| regulatory protein [Azorhizobium caulinodans ORS 571] gi|158329085|dbj|BAF86570.1| regulatory protein [Azorhizobium caulinodans ORS 571] Length = 223 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 35/52 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++V L ++EG+ + +IA LG+S TV ++++I++K ++R+ A+ Sbjct: 156 LTPQQVRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAV 207 >gi|120611131|ref|YP_970809.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|326317560|ref|YP_004235232.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120589595|gb|ABM33035.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|323374396|gb|ADX46665.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 208 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LTGRE + L I G+ + +IA LGIS TV + A+IM K T + + A+ N Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGQN 204 >gi|110634204|ref|YP_674412.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285188|gb|ABG63247.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 310 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGRE E L+ + EG+++ EIA LGIS TV + + M K T I A+ N Sbjct: 250 LTGREQEVLSLVLEGRSNKEIAKQLGISHRTVEIHRSRAMAKYNATTAMQLIRRAMIEN 308 >gi|148260734|ref|YP_001234861.1| response regulator receiver protein [Acidiphilium cryptum JF-5] gi|146402415|gb|ABQ30942.1| response regulator receiver protein [Acidiphilium cryptum JF-5] Length = 267 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G DF LT R+ + +GK + IA LG+S +TV +I +IMRK R+ A+ Sbjct: 196 GDDF-LTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMRKIGATNRTQAV 251 >gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 211 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I++GK + +I+ +L I+ +TV + +I K R+ A+ A+ Sbjct: 148 ELSDRELEVLRLIAKGKNNQQISNVLNIAESTVRFHTNNIFGKLNVSDRTQALVTALNRG 207 Query: 245 IV 246 IV Sbjct: 208 IV 209 >gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6] gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6] Length = 464 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L ++ G ++ +IA L IS NTV ++ +I KT +R+ A YA+ + Sbjct: 7 ISEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIYAINHGF 66 Query: 246 V 246 V Sbjct: 67 V 67 >gi|294791142|ref|ZP_06756299.1| putative two-component system response regulator [Scardovia inopinata F0304] gi|294457613|gb|EFG25967.1| putative two-component system response regulator [Scardovia inopinata F0304] Length = 214 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I +G T+ E+A L I+ + Y++ IM K +R+ + +A N + Sbjct: 154 LTKREKETLILIGKGMTNAELAQELFITETSARTYVSRIMAKLNISSRAQLVIFAYENGL 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|289663521|ref|ZP_06485102.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 235 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGI+ TV ++ I++K K R+ A YAV++ + Sbjct: 174 LSKRERQVLSLLPRGLTNATLAAELGIAPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] Length = 214 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G +LT RE L +++GK++ E+A L IS TV + +I RK + +G Sbjct: 139 VMTGGREQLTNREQMVLLQLAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLT 198 Query: 238 AYAVRNNIV 246 YA+ + ++ Sbjct: 199 RYALEHGVL 207 >gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 226 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + Sbjct: 161 LTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|296139697|ref|YP_003646940.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027831|gb|ADG78601.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I+EG + +IA L +S +TV +I ++ K + R+ A+ YA Sbjct: 161 VDLTPRETEVLQLIAEGLANRDIAARLFVSESTVKTHINNLFAKAHLRDRAHAVRYAFDT 220 Query: 244 NI 245 I Sbjct: 221 GI 222 >gi|160883312|ref|ZP_02064315.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483] gi|156111296|gb|EDO13041.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483] Length = 233 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222 Query: 243 NNIV 246 IV Sbjct: 223 AGIV 226 >gi|27802474|gb|AAO21112.1| TraR [Rhizobium leguminosarum bv. viciae] Length = 234 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE CL W + GK++ E A++ GI+ TV +Y+ K T +A A + + Sbjct: 174 LSPREAMCLMWAARGKSAPETAMLTGINPRTVQHYLDKAREKLEAATVPQLVAIAKDHGL 233 Query: 246 V 246 V Sbjct: 234 V 234 >gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] Length = 218 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE+ L + +GK + EIA L IS+NTV N+I +I K +R Sbjct: 151 LSDRELGVLQLVGQGKGNKEIAAQLFISQNTVKNHIQNIRNKLNVGSR 198 >gi|307610855|emb|CBX00470.1| hypothetical protein LPW_21881 [Legionella pneumophila 130b] Length = 191 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE L +SEG T + A LGIS TV +I + +K KTR+ IA R + Sbjct: 132 LTPREYNTLLLLSEGYTDKQTAKKLGISPRTVEAHINNSKQKLGIKTRAELIAQFSRKH 190 >gi|222870082|gb|EEF07213.1| predicted protein [Populus trichocarpa] Length = 326 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 164 LLAAYQA----NMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGI 212 LLAA QA +F S + G + LT RE + L I G+ + +IAV LG+ Sbjct: 228 LLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHGIGRGQANKDIAVQLGV 287 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 S TV + ++ RK + R+ + YAV+ Sbjct: 288 SVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 318 >gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 244 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ECL + + G+T + LGI+ TV ++ ++ K + A+A AV + Sbjct: 180 LTAREIECLRFAAVGRTVADTGQALGITSRTVEFHLKNVAEKLDATNKVHAVAIAVSQGL 239 Query: 246 V 246 V Sbjct: 240 V 240 >gi|311745099|ref|ZP_07718884.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1] gi|126577613|gb|EAZ81833.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1] Length = 216 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT REVE L S+G ++I L IS TV +I +I K ++ A+ AV Sbjct: 150 EEITLTKREVEILEQTSKGLNYNQIGENLFISPKTVRKHIENIYHKLQVHSKLEAVQKAV 209 Query: 242 RNNIV 246 +N I+ Sbjct: 210 KNRII 214 >gi|86159176|ref|YP_465961.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775687|gb|ABC82524.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 215 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L + G T ++A LGI+ TV Y+ I K T++ A AV + Sbjct: 153 LSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 216 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I+ G ++ EIA L IS TV N++ I+ + + R+ A A Sbjct: 151 ELTPREQEILRLIATGASNREIAQTLYISEKTVKNHVTHILSRLNVRDRTQAAILA 206 >gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A M K+ + +E LT RE E L +S+G T EIA L IS TV + A++M Sbjct: 133 AIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK + ++ + YA++ I+ Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213 >gi|238791031|ref|ZP_04634747.1| LuxR family transcription regulatory protein [Yersinia frederiksenii ATCC 33641] gi|238720875|gb|EEQ12599.1| LuxR family transcription regulatory protein [Yersinia frederiksenii ATCC 33641] Length = 104 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 29/60 (48%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L +I +S EIA L +S T+NN I SI +K+ + I Y I Sbjct: 27 FTKREWEVLFYILHAFSSGEIAKKLHLSSRTINNVIQSIYKKSDVTNKQQVIEYCYEKKI 86 >gi|296131053|ref|YP_003638303.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022868|gb|ADG76104.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 218 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR--SGAIAYAVR 242 LT RE + LT + +G ++ EIA L +S TV ++++ ++ K +TR +G +A VR Sbjct: 160 LTARERDVLTALGDGLSNAEIAARLVVSETTVKSHVSHVLAKLGVRTRLQAGVLAREVR 218 >gi|197123248|ref|YP_002135199.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220918037|ref|YP_002493341.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196173097|gb|ACG74070.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219955891|gb|ACL66275.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 215 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L + G T ++A LGI+ TV Y+ I K T++ A AV + Sbjct: 153 LSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|260906658|ref|ZP_05914980.1| two component transcriptional regulator, LuxR family protein [Brevibacterium linens BL2] Length = 201 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + G + EIA L IS TV N +++ + KTA + R+ A+ A N Sbjct: 141 LTERETEVLHAAAGGGSVGEIAAQLFISSGTVRNRLSAAIGKTAARNRADAVRIARDNG 199 >gi|311697246|gb|ADQ00118.1| protein containing signal transduction response regulator, receiver region domains [marine bacterium HP15] Length = 222 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++ + R VE L +SEG+T+ EI+ L I+ NT+ +Y+ I +R + AV Sbjct: 157 YQFSPRYVEILVLLSEGRTNHEISDELSINLNTLKSYLKDIYSILGVGSRMACVRKAVSE 216 Query: 244 NIV 246 I+ Sbjct: 217 GII 219 >gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.] Length = 229 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L + EG + EIA L IS TV + A+IM K T S AY++ + Sbjct: 166 LTQREKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIERGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 211 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L G++S EIA L IS TV ++ASI K + ++ A+ A++ + Sbjct: 144 LSPREREVLLLAGRGESSKEIASKLYISERTVQTHLASIYDKLGARNKTEALLLALKYGV 203 Query: 246 V 246 V Sbjct: 204 V 204 >gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] Length = 218 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YAV++ + Sbjct: 153 LTPRELEILGYLAAGHSNKVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212 >gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 218 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 164 LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +L+ Y + K D H + +L+ +E E L ++ +G +S EIA L +S TV+N+ Sbjct: 135 ILSGYMQQLKKG-DRHGRAERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHR 193 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A++MR+ + + + AV + ++ Sbjct: 194 ANMMRRLQVRNAAELVRMAVEDKLI 218 >gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 155 ELTERETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 239 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 178 LTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 236 >gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 209 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L W++ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRELDVLQWLATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|111021467|ref|YP_704439.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820997|gb|ABG96281.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 546 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV L ++ GK++ +A L +S TV ++++I K +RS A AYA + + Sbjct: 482 LTPREVCVLRLVAAGKSNRAVATELFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHRL 541 Query: 246 V 246 V Sbjct: 542 V 542 >gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +AA N F+ K E LT RE++ L +++GK++ EIA L I TV ++ + Sbjct: 143 VAAKMMNRFRQPQQTTAKAHEQLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHVTN 202 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 I K R+ A YA + + Sbjct: 203 IFSKLGVDDRTQAAIYAHKQGL 224 >gi|289641921|ref|ZP_06474076.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508221|gb|EFD29165.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 371 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A +++F+S G D ELT RE E L I+ G ++ EIA L I+ TV ++ I Sbjct: 294 VARTASSVFRS---EGGLD-ELTAREREVLALIAGGASNQEIAEQLVITVGTVKTHVKHI 349 Query: 225 MRKTATKTRSGAIA 238 + K RS AIA Sbjct: 350 LAKLGAVNRSQAIA 363 >gi|228900420|ref|ZP_04064648.1| Response regulator [Bacillus thuringiensis IBL 4222] gi|228907528|ref|ZP_04071385.1| Response regulator [Bacillus thuringiensis IBL 200] gi|228969652|ref|ZP_04130440.1| Response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790061|gb|EEM37855.1| Response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228852020|gb|EEM96817.1| Response regulator [Bacillus thuringiensis IBL 200] gi|228859218|gb|EEN03650.1| Response regulator [Bacillus thuringiensis IBL 4222] Length = 195 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 90 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 143 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188 >gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 239 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + G+T+ EIA L IS TV ++A+I K +R+ A+ + ++ Sbjct: 173 DLSPRELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRG 232 >gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D+ G LT RE E L I+ G + EIA LGI+ TV + IM+K Sbjct: 138 LEGSDMGGGS---LTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHN 194 Query: 233 RSGAIAYAVRNNIV 246 + AYA+R ++ Sbjct: 195 SAELAAYAIRRGLI 208 >gi|302538500|ref|ZP_07290842.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. C] gi|302447395|gb|EFL19211.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. C] Length = 210 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LTGRE E L ++ G ++ ++A LG++ TV +++SI+ + R+ A Sbjct: 159 LTGREREVLGYLGSGFSNGQVARRLGLAEGTVKAHVSSILARLGVDNRAAA 209 >gi|302339049|ref|YP_003804255.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301636234|gb|ADK81661.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 290 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + F LT RE E + + + EIA LGI+ TV +++ I +KT ++ +SG Sbjct: 230 EKFNLTKREAEVTELLLKSYSYKEIAFHLGITMPTVKTHVSRIYKKTGSQGKSG 283 >gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 198 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +S+G+++ EI L +S +TV + + RK + R+ A+A R Sbjct: 137 LTEREMQVLRGMSQGQSNGEIGRELFLSEDTVKTHARRLFRKLGARDRAQAVALGFRRGF 196 Query: 246 V 246 V Sbjct: 197 V 197 >gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] Length = 235 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 +A A++F S + G LT RE + L W EG + +I+ L IS +TVN +I ++ Sbjct: 157 SAMTAHVFDSLGL--GAAISLTERERQVLRWTVEGLNAFDISEKLNISVSTVNWHIGKVL 214 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K + A A AV N++ Sbjct: 215 AKFGATNKVQAAARAVALNLL 235 >gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] Length = 216 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT REVE L ++ G + EIA L +S +T+ +I +I +K R A+ +A Sbjct: 155 EVSLTDREVEVLKVMATGAKNSEIASSLNLSPHTIKTHIYNIFKKINASNRLQAVNWAQE 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] Length = 254 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ ++ Sbjct: 192 DFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFVKTTTSSRTELVRYALEHS 251 Query: 245 IV 246 +V Sbjct: 252 LV 253 >gi|206970619|ref|ZP_03231571.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] gi|206734255|gb|EDZ51425.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] Length = 212 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|163755190|ref|ZP_02162310.1| hypothetical protein KAOT1_07218 [Kordia algicida OT-1] gi|161324610|gb|EDP95939.1| hypothetical protein KAOT1_07218 [Kordia algicida OT-1] Length = 218 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 KD ELT ++ C T EIA + +S T++ Y S+ + K+R G + YA+ Sbjct: 156 KDTELTFLKLACTEM-----TYKEIAQEMCLSPKTIDGYRESLFKHFKVKSRIGLVLYAI 210 Query: 242 RNNIV 246 RNN+V Sbjct: 211 RNNMV 215 >gi|89894764|ref|YP_518251.1| hypothetical protein DSY2018 [Desulfitobacterium hafniense Y51] gi|89334212|dbj|BAE83807.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D H K LT REVE L + G S EIA L I++ TV+ +I +I+ K K+R Sbjct: 162 DPHDDKMALLTSREVEILKLVVTGLRSKEIAENLRITKRTVDYHIGNILLKLEVKSR 218 >gi|329924379|ref|ZP_08279496.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328940730|gb|EGG37047.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 201 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L G T+ +I+ L ++R TV NY++S ++K +R A+ A Sbjct: 141 LSEREIEMLRLTKRGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIA 195 >gi|254496316|ref|ZP_05109202.1| two-component response regulator [Legionella drancourtii LLAP12] gi|254354477|gb|EET13126.1| two-component response regulator [Legionella drancourtii LLAP12] Length = 212 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE + + ISEGK + EIA L IS +TV + A+IMRK K Sbjct: 140 LTERERQIIDLISEGKLNKEIAYELTISISTVEAHRANIMRKMQAK 185 >gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 215 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G ++ E+A L IS+NTV+ + IM K + I +A+R + Sbjct: 152 LSDREREVLALLAKGSSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIAELIRFAIREGL 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA L +S TV N++ + +RK R YA+ + Sbjct: 162 LTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|289670915|ref|ZP_06491990.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 235 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGI+ TV ++ I++K K R+ A YAV++ + Sbjct: 174 LSKRERQVLSLLPRGLTNATLAAELGIAPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|229069389|ref|ZP_04202679.1| Response regulator [Bacillus cereus F65185] gi|228713876|gb|EEL65761.1| Response regulator [Bacillus cereus F65185] Length = 212 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|229115274|ref|ZP_04244684.1| Response regulator [Bacillus cereus Rock1-3] gi|228668414|gb|EEL23846.1| Response regulator [Bacillus cereus Rock1-3] Length = 195 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 90 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 143 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188 >gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 203 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L +SEGK + EIA L I+ TV ++ S+ RK R+ A A Sbjct: 143 LSPREIEMLRGLSEGKANKEIARDLNIAEPTVKLHMKSLYRKMKVSNRTQAALVA 197 >gi|254418119|ref|ZP_05031843.1| transcriptional regulator, LuxR family, putative [Brevundimonas sp. BAL3] gi|196184296|gb|EDX79272.1| transcriptional regulator, LuxR family, putative [Brevundimonas sp. BAL3] Length = 55 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W+S GK+S +I ILG+S TV++Y+ + K +TR Sbjct: 2 WVSRGKSSGDIGAILGLSPRTVDSYLEKVCSKLRVRTR 39 >gi|163749108|ref|ZP_02156358.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] gi|161331178|gb|EDQ02067.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] Length = 221 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTKRERTIIQIVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203 >gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614] gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614] Length = 229 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E E T ++ G ++ EIA ++ +S +TV ++ +I+RK + R + +A + + Sbjct: 165 LTDKEREVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRKLGLRDRVQIVVFAYEHGL 224 Query: 246 V 246 V Sbjct: 225 V 225 >gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 209 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++ +Q+ K +D +LT RE E L I EG T+ EI L I TV ++++ Sbjct: 133 MMTNFQSQKKKLHD-------DLTEREREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSN 185 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K R+ A Y RN ++ Sbjct: 186 ILSKLDVHDRTQAAVYVHRNKLL 208 >gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ L ++ G ++ EI L IS TV ++ +I+RK R+ A +AVR Sbjct: 147 DIPLTNREMQVLRHLALGLSNREIGRSLTISIETVKEHVQNILRKIDVTDRTQAAVWAVR 206 Query: 243 NNIV 246 +V Sbjct: 207 RGLV 210 >gi|317404098|gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54] Length = 218 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+ G + +IA LG+S TV + +I RK ++ I YAV N Sbjct: 158 LTQRERDVLRHIASGHANKQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|326318556|ref|YP_004236228.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375392|gb|ADX47661.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 210 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K A + S YA++N Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMALSSNSDLTYYALKNK 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|205372767|ref|ZP_03225577.1| LuxR family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 120 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 30/43 (69%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 FELT RE E + ++ G ++ E+A L IS++TV N++++I + Sbjct: 75 FELTSREREIINYLLSGHSNIELAEALEISQHTVKNHVSNIFK 117 >gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 167 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA L +S TV N++ + RK R YA+ + + Sbjct: 104 LTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 163 >gi|229824576|ref|ZP_04450645.1| hypothetical protein GCWU000282_01920 [Catonella morbi ATCC 51271] gi|229785947|gb|EEP22061.1| hypothetical protein GCWU000282_01920 [Catonella morbi ATCC 51271] Length = 366 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 2/51 (3%) Query: 186 LTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT E + L I E +T E+AV++GISR+TV + I+S+M+K + R+ Sbjct: 2 LTPNEAKVLALIEEDPFRTQQELAVLMGISRSTVASLISSLMQKHQLRGRA 52 >gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115] Length = 218 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F ++ + +L+ RE+E L + G+T+ EIA L IS TV ++A+I K + Sbjct: 140 FSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGS 199 Query: 233 RSGAIAYAVRNN 244 R+ A+ + ++ Sbjct: 200 RTEAVLHGIKRG 211 >gi|120612503|ref|YP_972181.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590967|gb|ABM34407.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 210 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K A + S YA++N Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMALSSNSDLTYYALKNK 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|89891781|ref|ZP_01203283.1| DNA-binding response regulator, LuxR family [Flavobacteria bacterium BBFL7] gi|89515936|gb|EAS18601.1| DNA-binding response regulator, LuxR family [Flavobacteria bacterium BBFL7] Length = 218 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G L D + E+ ++ KS + + K L+ RE+E L +S GK + EI+ IL Sbjct: 128 GETFLSDSIKEV---MNSKSKTGKSVTLRYKK---LSAREIEVLNLLSRGKRNKEISQIL 181 Query: 211 GISRNTVNNYIASIMRK 227 I+ TV+ Y +++K Sbjct: 182 SINEKTVSTYKTRLLKK 198 >gi|89901412|ref|YP_523883.1| LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346149|gb|ABD70352.1| transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 206 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKT 232 ELT RE E + +G TS EI L IS TV Y A +MRK TA+ T Sbjct: 148 ELTAREREVAAHLMDGLTSKEIGKTLAISHRTVEIYRARLMRKYTASNT 196 >gi|23577991|ref|NP_702938.1| putative transcriptional regulatory protein [Corynebacterium efficiens YS-314] gi|259506139|ref|ZP_05749041.1| two component response regulator [Corynebacterium efficiens YS-314] gi|23494817|dbj|BAC19780.1| putative transcriptional regulatory protein [Corynebacterium efficiens YS-314] gi|259166260|gb|EEW50814.1| two component response regulator [Corynebacterium efficiens YS-314] Length = 225 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 FE LT RE+E L +++ +T+ EIA L I TV Y++ ++ K + R G +A Sbjct: 160 FEALTPRELEVLKRVAQAETNAEIANYLHIGSETVKTYVSRLISKIGVRDRVGLAVWAHT 219 Query: 243 NNIV 246 + IV Sbjct: 220 SGIV 223 >gi|302552511|ref|ZP_07304853.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470129|gb|EFL33222.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 203 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S + K + R Sbjct: 132 AADAIAAGDSPLTVREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRH 191 Query: 235 GAIAYA 240 A+ A Sbjct: 192 AAVRLA 197 >gi|170720806|ref|YP_001748494.1| two component LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169758809|gb|ACA72125.1| two component transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 206 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%) Query: 163 GLLAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGIS 213 +LA Y N F S +H G + ++ RE+ L ++G+++ EIA + +S Sbjct: 116 AVLAGY--NYFPSQAIHTGHETAGTDLTLFRQVNDRELMVLQLFAQGRSNKEIAKGMFLS 173 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV+ Y +M+K T I A RN +V Sbjct: 174 NKTVSTYKKRLMQKLQVDTLVDLIEMAKRNALV 206 >gi|296285195|ref|ZP_06863193.1| LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 186 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ ECL W++ GKT+ E A+IL IS TV ++ + + + A+ + + Sbjct: 114 LTDRQRECLLWVARGKTAAETAMILEISTETVIQHLKMARERYQVHCKQSLVVAALFDGL 173 Query: 246 V 246 + Sbjct: 174 I 174 >gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I++G ++ EIA L ++ +T+ +++ ++ K + R+ A +A Sbjct: 157 ELTDRETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEAR 216 Query: 245 IV 246 +V Sbjct: 217 LV 218 >gi|254499005|ref|ZP_05111705.1| hypothetical protein LDG_3083 [Legionella drancourtii LLAP12] gi|254351782|gb|EET10617.1| hypothetical protein LDG_3083 [Legionella drancourtii LLAP12] Length = 272 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE +CL W++ GK++ I+ I +SR TV IASI K T Sbjct: 203 LTERERDCLWWLALGKSAQIISEINQVSRKTVERNIASIKEKLGCYT 249 >gi|76811819|ref|YP_332880.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|76581272|gb|ABA50747.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 363 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 243 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 295 >gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+IL I +TV +I ++++K AI V Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236 >gi|330470665|ref|YP_004408408.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813636|gb|AEB47808.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 338 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E L ++ G+++ E+A LGI TV +++ ++RK + R A+ Sbjct: 278 LTAREREVLLAVARGRSNAEVAADLGIGDETVKTHVSEVLRKLGCRDRVQAV 329 >gi|300723547|ref|YP_003712852.1| response regulator in two-component regulatory system with NarQ [Xenorhabdus nematophila ATCC 19061] gi|297630069|emb|CBJ90706.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus nematophila ATCC 19061] Length = 211 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE++ L ISEG T+ EIA L IS TV + ++++K +++R Sbjct: 147 KLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKSRSR 195 >gi|295836763|ref|ZP_06823696.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces sp. SPB74] gi|295826194|gb|EFG64729.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces sp. SPB74] Length = 215 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 WG L+ RE E + I+ G + +IA I+ TV N+I I K T TRS AIA Sbjct: 144 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 200 >gi|218513661|ref|ZP_03510501.1| two-component response regulator protein [Rhizobium etli 8C-3] Length = 115 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I G+++ EIA +LGIS T + ++ +K T +G I YA+ + I Sbjct: 42 LTPREHDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHGI 101 Query: 246 V 246 Sbjct: 102 A 102 >gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 237 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+++++V Sbjct: 177 TPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTETSSRTELVRYALQHHLV 236 >gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 224 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 164 LLAAYQANMFKSYDV----HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+AA+Q+ D +L+ RE E L I+ G ++ EIA L I+ TV Sbjct: 137 LVAAFQSQGAPEPDPGPMPQEDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKI 196 Query: 220 YIASIMRKTATKTRSGAIAYA 240 ++ I+RK +R A YA Sbjct: 197 HVQHILRKLGLTSRVQAAVYA 217 >gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter phenanthrenivorans Sphe3] Length = 217 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + I+EG ++ EIA L IS TV+ + A++++K + R +A+R + Sbjct: 155 LTPREEQITKLIAEGNSTKEIADALKISIKTVDRHRANVLQKLGLRDRLDLTRFAIRTGL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|288959032|ref|YP_003449373.1| two-component response regulator [Azospirillum sp. B510] gi|288911340|dbj|BAI72829.1| two-component response regulator [Azospirillum sp. B510] Length = 228 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ REV+ L + G+++ IA L I+ +TV + ++MRK + R+ A +A++N Sbjct: 162 ELSKREVQILRCLLAGQSNKAIARNLHITESTVKMHFKNVMRKINAQNRTQAAVWAIQNG 221 Query: 245 I 245 + Sbjct: 222 L 222 >gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 191 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ RE+E L I+ G T+ EIA L IS TV ++++I+ K R+ A +A Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFA 177 >gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 211 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA L ++ TV N+++ I+ K + R+ A+ A+ I Sbjct: 150 LTEREREVLRLVAHGYSNREIAGALFLAEGTVKNHVSMILTKLGARDRTNAVLRALHEGI 209 Query: 246 V 246 + Sbjct: 210 L 210 >gi|318057614|ref|ZP_07976337.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079841|ref|ZP_07987173.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 215 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 WG L+ RE E + I+ G + +IA I+ TV N+I I K T TRS AIA Sbjct: 144 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 200 >gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 229 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E +S+G ++ EIA L +S TV ++ I+ K + R A+ A N + Sbjct: 163 LTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYENGL 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|297196139|ref|ZP_06913537.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297153089|gb|EDY63356.2| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 897 Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+GRE + L ++ +++EIA L +S NTV ++ S+ RK A R+ A+ A Sbjct: 836 KLSGRERDVLERLARMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVSRRNEAVRRA 891 >gi|269102423|ref|ZP_06155120.1| transcriptional regulator VpsT [Photobacterium damselae subsp. damselae CIP 102761] gi|268162321|gb|EEZ40817.1| transcriptional regulator VpsT [Photobacterium damselae subsp. damselae CIP 102761] Length = 219 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE + L ++EGKT+ EIA L ++ TV ++I ++ +K K R AI Sbjct: 156 LTRREKQILGLLTEGKTNIEIAETLFVAETTVKSHIYNLYKKIDVKCRKEAI 207 >gi|311745274|ref|ZP_07719059.1| putative nitrate/nitrite DNA-binding response regulator [Algoriphagus sp. PR1] gi|126577803|gb|EAZ82023.1| putative nitrate/nitrite DNA-binding response regulator [Algoriphagus sp. PR1] Length = 214 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I + T+ EIA L ISR+TV ++ ++ +KT + G + +++ N + Sbjct: 152 LSERELDVLQLIIQELTTQEIADKLFISRHTVESHKKNLFKKTDQNSLVGLVKFSISNQL 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 217 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E + ++ G+++ EIA LG++ +TV ++ +I++K +R YAV Sbjct: 153 KLTAREREIVQGLTRGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERG 212 Query: 245 I 245 + Sbjct: 213 L 213 >gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G +S +IA L IS TV N++ + +RK R YA+ + + Sbjct: 157 LTQRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAALRKLQLGNRVELTRYAIEHGL 216 >gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 222 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D LT RE E L I++G + EIA L IS TV ++++++ K + R+ YA Sbjct: 153 GADEGLTEREKEVLLLIADGMANKEIAEELHISIKTVKTHVSNLLMKCELEDRTQLAVYA 212 Query: 241 VRNN 244 R Sbjct: 213 HRKG 216 >gi|237811617|ref|YP_002896068.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|237503468|gb|ACQ95786.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] Length = 363 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 243 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 295 >gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +S G+T E++ ILGIS TV +I + +RK AI A+ N+ Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|313496948|gb|ADR58314.1| LuxR family DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 249 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ R++E +S+G T+ +IA LGI+ NTV Y++ ++R T R+ Sbjct: 180 KLSPRQLEVARLVSKGNTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 229 >gi|295107220|emb|CBL04763.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 126 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE + I+EG T+D+IA+ L IS +TV ++I +I K R+ +A Sbjct: 67 LTSRERDVALLIAEGFTNDQIALRLCISLSTVKSHIQNIFAKAHVPNRTALVA 119 >gi|157960462|ref|YP_001500496.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845462|gb|ABV85961.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 224 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +S G + EIA L IS +TV +I+SI RKT + R Sbjct: 156 LTNREKTIIQLVSSGARNKEIADKLCISEHTVKAHISSIFRKTQARNR 203 >gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + LT ++EG + IA L +S TV N ++ I +K R+ A AV+ Sbjct: 152 QLTERERDILTLLAEGHDNRTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRG 211 Query: 245 IV 246 ++ Sbjct: 212 LI 213 >gi|109898606|ref|YP_661861.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700887|gb|ABG40807.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 215 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE LT +++GK+S EIA IL IS TV + ++ K ++ + I YAV + Sbjct: 152 KLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHG 211 Query: 245 IV 246 +V Sbjct: 212 LV 213 >gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D+ G LT RE E L I+ G + EIA LGI+ TV + IM+K Sbjct: 138 LEGSDLGGGA---LTAREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHN 194 Query: 233 RSGAIAYAVRNNIV 246 + AYA+R ++ Sbjct: 195 SAELAAYAIRRGLI 208 >gi|319902814|ref|YP_004162542.1| transcriptional regulator [Bacteroides helcogenes P 36-108] gi|319417845|gb|ADV44956.1| transcriptional regulator [Bacteroides helcogenes P 36-108] Length = 220 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E L I+ GKT+ EIA +S +TVN++ +I RK + A YA++ I Sbjct: 153 LTAAERSILKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLSVNNAHEATKYAMKAGI 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|307326932|ref|ZP_07606123.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887468|gb|EFN18463.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 195 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 31/43 (72%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +LT RE E L+ ++EG+++ EIA L ++ VN +++SI++K Sbjct: 131 QLTPREREVLSLMAEGRSNGEIARDLYVTEAAVNKHVSSILQK 173 >gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] Length = 191 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ RE+E L I+ G T+ EIA L IS TV ++++I+ K R+ A +A Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFA 177 >gi|269926239|ref|YP_003322862.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789899|gb|ACZ42040.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 225 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 186 LTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L+ + G +S ++A LG++ +TV + +I+ K K R+ AYA R N Sbjct: 152 LTSREREILSLLVHGVSSTRDLAEKLGVTEHTVKFHFRNILSKLHLKNRAQVAAYAARYN 211 Query: 245 IV 246 V Sbjct: 212 AV 213 >gi|209963697|ref|YP_002296612.1| transcriptional regulatory protein FixJ [Rhodospirillum centenum SW] gi|209957163|gb|ACI97799.1| transcriptional regulatory protein FixJ [Rhodospirillum centenum SW] Length = 209 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 27/45 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 L+ REVE L + EG+T+ I +LGIS TV + A IM KT Sbjct: 146 LSEREVEVLGQVIEGRTNRAIGDVLGISIKTVEAHRARIMEKTGA 190 >gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 223 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG +++ I IL IS TV + A+IM+K + + YA+R + Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220 Query: 246 V 246 + Sbjct: 221 I 221 >gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 201 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE + L ++ G ++ E+A L +S TV NY+++I+ K A R AI A N Sbjct: 141 LSQRETDVLQAVANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIARHNG 199 >gi|327404685|ref|YP_004345523.1| LuxR family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320193|gb|AEA44685.1| transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 211 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE+E + + GK++ EI+V LG+S +TV + + +K K+ S + + + N Sbjct: 143 FNLTRREIEIVESLLNGKSTLEISVELGLSPHTVQTHRKNCFKKLKVKSLSELLLFEMEN 202 Query: 244 NI 245 + Sbjct: 203 QV 204 >gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] Length = 201 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L + G + EIA L +S T+ NY+++I K + R A+ A N Sbjct: 141 LTKRETEVLKVAASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAVELAQNN 198 >gi|227115411|ref|ZP_03829067.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 245 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+IL I +TV +I ++++K AI V Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236 >gi|169827392|ref|YP_001697550.1| DNA-binding response regulator DegU [Lysinibacillus sphaericus C3-41] gi|168991880|gb|ACA39420.1| DNA-binding response regulator DegU [Lysinibacillus sphaericus C3-41] Length = 215 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 T RE L ++EGK EI+ L IS+ ++ I I K + KTR AI A++N Sbjct: 134 TKREYVILLMLAEGKDVQEISQNLNISKKSIKMNINKIYNKLSVKTRLQAIEKAIKN 190 >gi|37223253|gb|AAQ90229.1| LuxR [Aliivibrio fischeri] Length = 218 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 22/33 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 +LT RE ECL W EGK+S +I+ ILG S V Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSEXXV 216 >gi|21223862|ref|NP_629641.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|4467257|emb|CAB37582.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 1091 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LTGRE + L +S+G+T+ +IA L IS T + ++++I+ K R A A A R Sbjct: 1020 LTGRERDVLRLVSDGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHR 1076 >gi|319648166|ref|ZP_08002383.1| YfiK protein [Bacillus sp. BT1B_CT2] gi|317389801|gb|EFV70611.1| YfiK protein [Bacillus sp. BT1B_CT2] Length = 230 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWI 197 RIR + +F G I+++D + L ++N+ + + D L T RE+ + I Sbjct: 127 RIRDAIKSVF-NGHIVMQDII-----LDKIKSNLAEHKEAEPKIDESLFTERELGIMALI 180 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + G ++ EI+ L IS T+ NYI+SI+ KT + R+ Sbjct: 181 ARGLSNKEISKELFISEGTIANYISSILGKTGLEHRT 217 >gi|302131479|ref|ZP_07257469.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRN--TVNNYIASIMRKTATKTRSGAIAYAV 241 + LT R++E L I GK++ EIA LG+S + TV + + IM++ +G + + V Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSLSIKTVETHRSQIMKRLQIFDVAGLVLFCV 213 Query: 242 RNNIV 246 R I+ Sbjct: 214 RERII 218 >gi|256786272|ref|ZP_05524703.1| response regulator [Streptomyces lividans TK24] gi|289770163|ref|ZP_06529541.1| response regulator [Streptomyces lividans TK24] gi|289700362|gb|EFD67791.1| response regulator [Streptomyces lividans TK24] Length = 233 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L REV+ L ++EG + EIA L S TV N + + + + R+ A+AYA+R Sbjct: 171 LGLAPREVDVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALRE 230 Query: 244 NIV 246 + Sbjct: 231 GYI 233 >gi|256751618|ref|ZP_05492494.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749568|gb|EEU62596.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 143 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 14/145 (9%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 +P E +C +F I P +DN D++ I+ + + + I Sbjct: 10 KPEEHYCDIFKQWY-CIATPLYIDNDIVGY-LDISTIKHNMA----------DEMIGFID 57 Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL N +K D+ +D E LT +++E + ++G T I++ LG+ +TV + Sbjct: 58 LLVYKIVNEYKRETDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPSTVKYHK 117 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I++K K AIA A++ N++ Sbjct: 118 KEIIKKLRVKNFQQAIAKAIKLNLI 142 >gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 530 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L +++G+++ EIA L I+ T N++ + K R+ A A+ + Sbjct: 460 LTDREVEILRLVAQGRSNKEIAAELFIAEKTARNHVERVYAKLGVNNRTQAGLAAIDRGL 519 Query: 246 V 246 V Sbjct: 520 V 520 >gi|156744240|ref|YP_001434369.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156235568|gb|ABU60351.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 1021 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++ G+T EIA L I+ +TV ++I I K + R+ A A A Sbjct: 960 LTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRTQAAARA 1014 >gi|182438031|ref|YP_001825750.1| LuxR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|117676049|dbj|BAF36640.1| putative LuxR-family transcriptional regulator [Streptomyces griseus] gi|178466547|dbj|BAG21067.1| putative LuxR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 400 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE E +I+ G + EIA L +S +TV ++I ++ K +R Sbjct: 301 YELTDRETEVTQFIARGLPTGEIAAQLHLSPHTVRDHIKAVFEKVGVSSRG 351 >gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 226 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + Sbjct: 161 LTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|323345593|ref|ZP_08085816.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323093707|gb|EFZ36285.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 318 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + + +G T+ EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSDREKDVIVSLVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 + Sbjct: 311 I 311 >gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + ++G+ S +IA L +S TV NY+ S + K + R AI A Sbjct: 141 LTPRELEVLRFAAKGEESAQIAAKLFLSVGTVRNYLTSAVTKLDARNRVDAIRIA 195 >gi|298483763|ref|ZP_07001936.1| transcriptional regulator [Bacteroides sp. D22] gi|295087553|emb|CBK69076.1| transcriptional regulator [Bacteroides xylanisolvens XB1A] gi|298270057|gb|EFI11645.1| transcriptional regulator [Bacteroides sp. D22] Length = 233 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222 Query: 243 NNIV 246 IV Sbjct: 223 AGIV 226 >gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 223 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E + ++ G+T+DE+A L + TV ++ + RK A + R A+A R + Sbjct: 159 LTERELEVVRLVALGRTNDEVAGELHLGVATVKTHLGNAQRKLAARNRVEVAAWAWRTGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|254389987|ref|ZP_05005209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813922|ref|ZP_06772565.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703696|gb|EDY49508.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326521|gb|EFG08164.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 201 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S + K + R Sbjct: 130 AADAISAGDSPLTAREAEVLALAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRH 189 Query: 235 GAIAYA 240 A+ A Sbjct: 190 TAVRLA 195 >gi|126652652|ref|ZP_01724813.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus sp. B14905] gi|169829490|ref|YP_001699648.1| germination protein [Lysinibacillus sphaericus C3-41] gi|299535535|ref|ZP_07048856.1| germination protein [Lysinibacillus fusiformis ZC1] gi|126590501|gb|EAZ84619.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus sp. B14905] gi|168993978|gb|ACA41518.1| Germination protein [Lysinibacillus sphaericus C3-41] gi|298728735|gb|EFI69289.1| germination protein [Lysinibacillus fusiformis ZC1] Length = 73 Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + KT+ +IA LGIS TV N+I++ ++K RS A+ +R Sbjct: 10 LTNREREIFALLLAEKTTRDIAEQLGISEKTVRNHISNTIQKLGVTNRSQALIELLR 66 >gi|91204579|emb|CAJ70807.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 202 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 H K+F +L RE E + + ++ EIA+ L +S NT+ Y+ +MRK +R+G Sbjct: 135 HIAKNFRKWQLNRREQEIVQLLLGDHSNKEIALYLNLSCNTIKGYLKLLMRKLDVNSRTG 194 Query: 236 AIA 238 I+ Sbjct: 195 IIS 197 >gi|330837581|ref|YP_004412222.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] gi|329749484|gb|AEC02840.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] Length = 528 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + L+ RE + +I EGK++ EIA L IS NTV + + + KT RS Sbjct: 448 YNLSPREQQVAKFIMEGKSNSEIAKELFISANTVKAHTSHVYEKTGATHRS 498 >gi|302058817|ref|ZP_07250358.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302134506|ref|ZP_07260496.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 82 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE + L + +G T+ EIA L IS TV ++++S++RK KTR+ +A V Sbjct: 3 VTIREQDVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRAELMARCV 58 >gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +EGK++ EIA +L +S TV ++ M K + R+ + A ++ + Sbjct: 159 LTAREREVMALAAEGKSNAEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|229084784|ref|ZP_04217044.1| Response regulator [Bacillus cereus Rock3-44] gi|228698531|gb|EEL51256.1| Response regulator [Bacillus cereus Rock3-44] Length = 212 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ ++ + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLLENKEAESKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI SI+ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205 >gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 211 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++GK++ EI+ L I+ +TV ++ +I K R+ A+ A+ I Sbjct: 149 LSNRELEVLRLIAKGKSNSEISQDLSIAESTVRFHLKNIFSKLDVGDRTQALVTALNRGI 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 556 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L + +G ++ EIA L IS +TV N+I +I +K RS IA + N Sbjct: 488 LTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 546 >gi|163802887|ref|ZP_02196775.1| excinuclease ABC subunit A [Vibrio sp. AND4] gi|159173294|gb|EDP58120.1| excinuclease ABC subunit A [Vibrio sp. AND4] Length = 214 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 38/59 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ ++A L +S +T+ ++++ I +K + K R AIA+A +N Sbjct: 153 DLTIRELQVLRCLQAGTSNIQMAEDLYVSESTIKSHLSQIFKKISVKNRVQAIAWADQN 211 >gi|163816627|ref|ZP_02207990.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759] gi|158447884|gb|EDP24879.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759] Length = 217 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 36/60 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +E++ +E++ + +++G + EIA L +S TV NYI+SI+ K + R+ + +N Sbjct: 155 YEISSKEMDIIRLVADGLNNKEIASRLFLSEGTVRNYISSILDKLCLRDRTQLACFFYKN 214 >gi|126650269|ref|ZP_01722497.1| two-component response regulator [Bacillus sp. B14905] gi|126592919|gb|EAZ86901.1| two-component response regulator [Bacillus sp. B14905] Length = 208 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E E L +++G T+ IA +G+++ TV NY++ + K ++R+ A+ A Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVA 201 >gi|83593270|ref|YP_427022.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576184|gb|ABC22735.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 254 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L W + G E+A LG++ T +++ + RK +T + A+A A+ Sbjct: 165 HLTNRERESLIWSARGCQVGEVADRLGVADRTAEHHLGAARRKLMARTTAQAVARAL 221 >gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] Length = 223 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG +++ I IL IS TV + A+IM+K + + YA+R + Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220 Query: 246 V 246 + Sbjct: 221 I 221 >gi|27380999|ref|NP_772528.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27354165|dbj|BAC51153.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +S DV L+ +++ L I EGK + +IA L I+ TV ++++I+RK Sbjct: 138 IQSADVELAARMATLSAQQLRILAMIVEGKLNKQIAGELDIAEQTVKGHVSTILRKLGVG 197 Query: 232 TRSGAIAYAVR 242 +R+ A A R Sbjct: 198 SRTQAAVLAER 208 >gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT REVE L +++G ++ + A LG+S TV N++ +++ K + R +AVR Sbjct: 186 LTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLGKLQLRNRVELTRFAVREG 244 >gi|332306797|ref|YP_004434648.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174126|gb|AEE23380.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 215 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE LT +++GK+S EIA IL IS TV + ++ K ++ + I YAV + Sbjct: 152 KLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHG 211 Query: 245 IV 246 +V Sbjct: 212 LV 213 >gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 257 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L +++G ++ + A LG+S TV N++ +++ K + R +AVR Sbjct: 185 LTAREIEVLRLVAKGLSAKDAAARLGVSPRTVQNHVHNVLSKLRLRNRVELTRFAVRAG 243 >gi|325982823|ref|YP_004295225.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] gi|325532342|gb|ADZ27063.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] Length = 210 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L +I+ GKT EI+ + +S TV+ Y A ++ K S I YA++N + Sbjct: 149 LSDREYQTLCFIAAGKTLSEISSEMFLSPKTVSVYRARLLEKLKLTNNSEIIRYAIKNKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|213583489|ref|ZP_03365315.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 84 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 23 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 73 >gi|52787684|ref|YP_093513.1| YfiK [Bacillus licheniformis ATCC 14580] gi|52350186|gb|AAU42820.1| YfiK [Bacillus licheniformis ATCC 14580] Length = 230 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWI 197 RIR + +F G I+++D + L ++N+ + + D L T RE+ + I Sbjct: 127 RIRDAIKSVF-NGHIVMQDII-----LDKIKSNLAEHKEAEPKIDESLFTERELGIMALI 180 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + G ++ EI+ L IS T+ NYI+SI+ KT + R+ Sbjct: 181 ARGLSNKEISKELFISEGTIANYISSILGKTGLEHRT 217 >gi|326403930|ref|YP_004284012.1| LuxR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050792|dbj|BAJ81130.1| LuxR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 319 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G DF LT R+ + +GK + IA LG+S +TV +I +IMRK R+ A+ Sbjct: 248 GDDF-LTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMRKIGATNRTQAV 303 >gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 245 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ + + Sbjct: 184 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRL 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 194 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L W+++G ++ EIA + IS TV +++ + K + R A+ A Sbjct: 132 LTAREQEVLQWMAQGLSTKEIARQMHISPETVKDHLLRLYEKLEARNRVEALERA 186 >gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 203 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I++G ++ + A LG+S TV N++ +++ K + R +A+R Sbjct: 140 LTAREIEVLRLIAKGLSARDAAARLGVSHRTVQNHVHNVLGKLQLRNRVELTRFALREG 198 >gi|261821119|ref|YP_003259225.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|84620008|gb|ABC59302.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum] gi|261605132|gb|ACX87618.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 245 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+IL I +TV +I ++++K AI V Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236 >gi|87199682|ref|YP_496939.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135363|gb|ABD26105.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 307 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE E L W S GK++ I+ +L IS TV ++ I K +TR Sbjct: 243 QKLGLTDREAEVLLWTSYGKSNATISEVLAISPRTVQKHLERIYEKLGIETR 294 >gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 245 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ + +V Sbjct: 185 TPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244 >gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 219 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E L I+ G + EIA L IS TV N++ +I+ + + + R+ A A Sbjct: 153 DLTPREKEVLRLIAAGANNKEIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208 >gi|326330415|ref|ZP_08196723.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951690|gb|EGD43722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 362 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + + G T+ EIA L +S TV +++ I+RK R+ AIA VR Sbjct: 297 LTAREQDVFALLVSGATNPEIADRLTVSETTVKSHVKHILRKLRVSNRAEAIAKYVRGG 355 >gi|294646863|ref|ZP_06724484.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294808898|ref|ZP_06767627.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|292637808|gb|EFF56205.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294443940|gb|EFG12678.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] Length = 233 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222 Query: 243 NNIV 246 IV Sbjct: 223 AGIV 226 >gi|271965253|ref|YP_003339449.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270508428|gb|ACZ86706.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 937 Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE E ++ G+T+ EIA +L +S TV ++A+++RK ++R+ Sbjct: 883 LSQREREVARLVALGRTNREIADVLFLSTRTVETHVATVLRKLGVRSRT 931 >gi|227544258|ref|ZP_03974307.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300910231|ref|ZP_07127691.1| transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185771|gb|EEI65842.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300892879|gb|EFK86239.1| transcriptional regulator [Lactobacillus reuteri SD2112] Length = 223 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G L+ RE E L I G T+ EIA+ + IS TV + IM+K + + + Y Sbjct: 155 LGNYIALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHY 214 Query: 240 AVRNNIV 246 AV++ +V Sbjct: 215 AVKHQLV 221 >gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 245 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I +G ++ EIA L I+ TV ++ +I+ K R+ A A+R+ + Sbjct: 184 LTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSGL 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|254383353|ref|ZP_04998705.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194342250|gb|EDX23216.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 219 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E + L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 157 LTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213 >gi|192361195|ref|YP_001981681.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687360|gb|ACE85038.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 209 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT +E E L I +G +S EIA LG+S TV N+ A +M K K+ Sbjct: 147 LTPKEQEILQGILQGLSSKEIAAGLGLSVRTVENHRARLMDKLHVKS 193 >gi|110637589|ref|YP_677796.1| response regulator, positive activator of uhpT transcription [Cytophaga hutchinsonii ATCC 33406] gi|110280270|gb|ABG58456.1| response regulator, positive activator of uhpT transcription [Cytophaga hutchinsonii ATCC 33406] Length = 318 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 DF LT RE E + +++ T EIA L IS TV +I++I KT +S +A Sbjct: 254 DFNLTAREREIIHLLAKAYTYKEIAEELFISDRTVAKHISNIYSKTGVSQKSELLA 309 >gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L+ ++ G ++ E+A L ++ TV ++ ++M K + R+ A+A+A + + Sbjct: 166 LTARERDVLSQVARGLSNAEVAAELYVAEATVKTHLGNLMAKLHLRDRAQAVAFAYESGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|298247497|ref|ZP_06971302.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550156|gb|EFH84022.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1055 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L + G+T E+A L +SRNT+ ++ SI RK R AI A R Sbjct: 995 LTTQEQRVLRLLIAGQTYAEMAETLIVSRNTIKTHVTSIYRKLGVNRRLDAIVLAQR 1051 >gi|298290097|ref|YP_003692036.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296926608|gb|ADH87417.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 222 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +SEG + +IA LG+S TV ++++I++K ++R+ A+ A + Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAASK 211 >gi|258593175|emb|CBE69506.1| conserved protein of unknown function; putative transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 300 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE++ +T + G T+ IA L IS+ TV N+I +I K +R A+AY Sbjct: 217 DLTRRELQVVTLMRTGATTAAIAEQLFISKTTVRNHIQNIFSKLKVHSRLEAVAY 271 >gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + ++ G+T++E+A L ++ +TV ++ ++ RK + + R A+A N + Sbjct: 169 LTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGL 228 Query: 246 V 246 V Sbjct: 229 V 229 >gi|153215381|ref|ZP_01949979.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153829298|ref|ZP_01981965.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|229512672|ref|ZP_04402141.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21] gi|124114752|gb|EAY33572.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|148875198|gb|EDL73333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|229350349|gb|EEO15300.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21] Length = 214 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y F+S+ D LT RE++ L + G ++ +IA L IS TV +++ I Sbjct: 136 LLHYYRYAFQSHQAQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K K R AIA+ +N Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212 >gi|332142663|ref|YP_004428401.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552685|gb|AEA99403.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 225 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+ I++G + EIA L IS NTV ++ SI RKT + R Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNR 206 >gi|91795094|ref|YP_564745.1| regulatory protein, LuxR [Shewanella denitrificans OS217] gi|91717096|gb|ABE57022.1| regulatory protein, LuxR [Shewanella denitrificans OS217] Length = 204 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G + T E+ C+ W ++ KT EI+++L +S V+++I ++KT S I + Sbjct: 137 GDESPFTQAEIACIQWTADCKTPKEISLLLTMSEQEVHDHIQHSLQKTGVSHISQLIGF 195 >gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 216 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E L ++ G S EIA +GIS TV ++ +I K +RS A+A ++ I Sbjct: 154 LTDKERHILKSVAHGFKSKEIAFDMGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGI 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 596 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+++ LT RE+E L +S+G I+ L +S TV NY +++ K R A+ A Sbjct: 530 GEEYGLTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLYDKLGVNNREEAVQKA 589 >gi|77745297|gb|ABB02549.1| response regulator [Lactobacillus reuteri] Length = 217 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G L+ RE E L I G T+ EIA+ + IS TV + IM+K + + + Y Sbjct: 149 LGNYIALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHY 208 Query: 240 AVRNNIV 246 AV++ +V Sbjct: 209 AVKHQLV 215 >gi|56708828|ref|YP_164869.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56680513|gb|AAV97178.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 391 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F+L+ E ++EGKT+ +IA G S +T+N+ + SI+ K+ R+ AI A Sbjct: 324 FDLSEAECAVFELMAEGKTNKQIAEERGRSLDTINSQVKSILSKSNCDNRTQAIRMAT 381 >gi|85708084|ref|ZP_01039150.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85689618|gb|EAQ29621.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 141 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L +++G ++ EIA LG+S NTV +IA++ K R A+ A Sbjct: 77 SLGLTRRECEILDHLAKGASNKEIARSLGVSPNTVKTHIANLYMKLEVTGRGKAVEAA 134 >gi|239927628|ref|ZP_04684581.1| two component LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 107 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++ L I+EG + EIA L ++ TV NY S ++K ++++ A+ A + I Sbjct: 3 LVEREIQVLKAIAEGASYAEIAADLILAHATVKNYAHSAIKKLGARSQAHAVHLAYQAGI 62 Query: 246 V 246 + Sbjct: 63 L 63 >gi|209515178|ref|ZP_03264046.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209504432|gb|EEA04420.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 208 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + L+ RE++ L I GK+ EI ++ IS T + Y + I+ K + + I YA+RN Sbjct: 143 YSLSARELQILQLIVSGKSLTEIGRLIFISVKTASTYRSRILSKLNLTSNAQLIDYAIRN 202 Query: 244 NI 245 + Sbjct: 203 GV 204 >gi|30019876|ref|NP_831507.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|228920546|ref|ZP_04083891.1| Response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952218|ref|ZP_04114309.1| Response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043592|ref|ZP_04191301.1| Response regulator [Bacillus cereus AH676] gi|229109295|ref|ZP_04238894.1| Response regulator [Bacillus cereus Rock1-15] gi|229127162|ref|ZP_04256159.1| Response regulator [Bacillus cereus BDRD-Cer4] gi|229144451|ref|ZP_04272856.1| Response regulator [Bacillus cereus BDRD-ST24] gi|229150040|ref|ZP_04278265.1| Response regulator [Bacillus cereus m1550] gi|296502434|ref|YP_003664134.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29895421|gb|AAP08708.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228633478|gb|EEK90082.1| Response regulator [Bacillus cereus m1550] gi|228639082|gb|EEK95507.1| Response regulator [Bacillus cereus BDRD-ST24] gi|228656278|gb|EEL12119.1| Response regulator [Bacillus cereus BDRD-Cer4] gi|228674305|gb|EEL29550.1| Response regulator [Bacillus cereus Rock1-15] gi|228725814|gb|EEL77062.1| Response regulator [Bacillus cereus AH676] gi|228807489|gb|EEM54017.1| Response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839176|gb|EEM84472.1| Response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296323486|gb|ADH06414.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 212 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|303246118|ref|ZP_07332399.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492514|gb|EFL52385.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 227 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++EG+ IA L ISR TV N+ ++I K + + + YAVR I Sbjct: 158 LTRREQQILRLLAEGRGVATIAAELFISRKTVENHRSNIFGKLSFSNMAELVHYAVRMGI 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|302187383|ref|ZP_07264056.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 87 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W + GKT+ EIA I S TV+ + ++I RK + S A+ A+R Sbjct: 23 QLTVKERQILEWAAIGKTAWEIARIQKCSEATVHFHTSNIRRKFDVHSLSAALVIAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 207 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L ++ G + EIA L +S +TV ++ SI K R+ A+ A R I Sbjct: 145 LSEREIDVLKRVANGAANKEIARALSLSEDTVKGHMRSIFSKLDVTDRTQAVTVAHRRGI 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 723 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G + IA LGI TV N+I S+ K + R+ A+ A + + Sbjct: 655 LTPRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGL 714 Query: 246 V 246 V Sbjct: 715 V 715 >gi|146343451|ref|YP_001208499.1| two-component LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196257|emb|CAL80284.1| putative two-component transcriptional regulator, LuxR family [Bradyrhizobium sp. ORS278] Length = 261 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +S+G + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 191 LTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 247 >gi|28868819|ref|NP_791438.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213969577|ref|ZP_03397713.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383351|ref|ZP_07231769.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|28852058|gb|AAO55133.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213925673|gb|EEB59232.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 126 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE + L + +G T+ EIA L IS TV ++++S++RK KTR+ +A V Sbjct: 47 VTIREQDVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRAELMARCV 102 >gi|53718880|ref|YP_107866.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|52209294|emb|CAH35239.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] Length = 302 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 182 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 234 >gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 210 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L SEG+T+ I L IS TV ++ + K R+ A++ A+R + Sbjct: 147 LSPREVEVLRLASEGRTNAAIGRALHISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGL 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|237715864|ref|ZP_04546345.1| transcriptional regulator [Bacteroides sp. D1] gi|229443511|gb|EEO49302.1| transcriptional regulator [Bacteroides sp. D1] Length = 221 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 151 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 210 Query: 243 NNIV 246 IV Sbjct: 211 AGIV 214 >gi|229132664|ref|ZP_04261511.1| Response regulator [Bacillus cereus BDRD-ST196] gi|228650791|gb|EEL06779.1| Response regulator [Bacillus cereus BDRD-ST196] Length = 195 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 90 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 143 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188 >gi|186471314|ref|YP_001862632.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197623|gb|ACC75586.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 210 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ GK+ +EIA I +S T++ + +M+K + I YA+R+ + Sbjct: 148 LSDREFQVLQMLAAGKSINEIADICALSAKTISTHKMRLMQKLGLANNAEVIRYAIRHGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 217 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 156 LTERETEILRYVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQVGNRVELARYAIEHGL 215 >gi|237722378|ref|ZP_04552859.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|260171068|ref|ZP_05757480.1| transcriptional regulator [Bacteroides sp. D2] gi|299146395|ref|ZP_07039463.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|315919388|ref|ZP_07915628.1| transcriptional regulator [Bacteroides sp. D2] gi|229448188|gb|EEO53979.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|298516886|gb|EFI40767.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|313693263|gb|EFS30098.1| transcriptional regulator [Bacteroides sp. D2] Length = 219 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208 Query: 243 NNIV 246 IV Sbjct: 209 AGIV 212 >gi|256389975|ref|YP_003111539.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356201|gb|ACU69698.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 208 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L ++G T +IA L +S TV NY+++ ++KTA + R+ A+ A Sbjct: 148 LTPRERDVLAASADGSTIADIARRLHLSEGTVRNYLSACIQKTAARNRTEAVRTA 202 >gi|229096320|ref|ZP_04227293.1| Response regulator [Bacillus cereus Rock3-29] gi|228687280|gb|EEL41185.1| Response regulator [Bacillus cereus Rock3-29] Length = 212 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +S G+T E++ ILGIS TV +I + +RK AI A+ N+ Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|225175237|ref|ZP_03729233.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169413|gb|EEG78211.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 215 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT E + L I+EGKT+ +IA + ++ TV NY++ I K R+ A AY + + Sbjct: 150 LTEMEKKVLLLIAEGKTNKQIAEEIFLAEKTVRNYVSKIFLKLNLSNRAAAAAYVSKKS 208 >gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + ++ G+T++E+A L ++ +TV ++ ++ RK + + R A+A N + Sbjct: 166 LTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGL 225 Query: 246 V 246 V Sbjct: 226 V 226 >gi|169828201|ref|YP_001698359.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168992689|gb|ACA40229.1| comA, srfB, comAA; two-component response regulator. potential cognate sensor kinase is comP [Lysinibacillus sphaericus C3-41] Length = 208 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E E L +++G T+ IA +G+++ TV NY++ + K ++R+ A+ A Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVA 201 >gi|167587375|ref|ZP_02379763.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 181 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 27/45 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 LT RE E ++ GKTS +I +L IS TV+ Y A +MRK T Sbjct: 124 LTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168 >gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I+ G ++ EIA L IS TV ++++I+ K R+ A +A + Sbjct: 155 ELSERELEVLRLIAGGLSNTEIAARLTISEKTVKGHLSNILSKLHLMDRTQAAVFAWQQG 214 Query: 245 IV 246 ++ Sbjct: 215 LI 216 >gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E + G ++ E+AV L +S TV +++A I K A + R+ A+ A + Sbjct: 162 LTPRELEVPGLLGRGLSNAELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|289668036|ref|ZP_06489111.1| transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 923 Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A A+ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRENALAQALERGLL 909 >gi|262407478|ref|ZP_06084026.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|262354286|gb|EEZ03378.1| transcriptional regulator [Bacteroides sp. 2_1_22] Length = 219 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208 Query: 243 NNIV 246 IV Sbjct: 209 AGIV 212 >gi|212637151|ref|YP_002313676.1| regulatory protein LuxR [Shewanella piezotolerans WP3] gi|212558635|gb|ACJ31089.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3] Length = 223 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE + +S G + EIA L IS +TV +I+SI RKT + R Sbjct: 155 QLTRREKTIIQLVSSGARNKEIAEGLCISEHTVKAHISSIFRKTHARNR 203 >gi|188575417|ref|YP_001912346.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519869|gb|ACD57814.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 204 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGI+ TV + I++K K R+ A YAV++ + Sbjct: 143 LSKREKQVLSLLPRGLTNASLAAELGIAPGTVKVQVERILQKLEVKDRTQAAVYAVQSRL 202 Query: 246 V 246 Sbjct: 203 A 203 >gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Herminiimonas arsenicoxydans] gi|133737588|emb|CAL60631.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Herminiimonas arsenicoxydans] Length = 196 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L DR+ E L A+ QA+ S +H + L+GRE E L I EGK + IA LGIS Sbjct: 114 LMDRVQE-ALSASEQAS--ASVAIHT-RLAALSGREREVLDLILEGKMNKVIADKLGISM 169 Query: 215 NTVNNYIASIMRKTATKT 232 TV + A I K KT Sbjct: 170 RTVEVHRAHIFDKMNVKT 187 >gi|116694520|ref|YP_728731.1| response regulator [Ralstonia eutropha H16] gi|113529019|emb|CAJ95366.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 219 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+ G T+ +IA L IS T + ++MRK + +AYA R I Sbjct: 149 LTRRELQILMLIARGATAGDIAAQLDISPLTARKHRENLMRKLDLHNTAEVVAYAARQGI 208 >gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis KT71] gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis KT71] Length = 222 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + G+ E LTGRE + L I GK++ EIA L IS TV + S+M K + + Sbjct: 150 IRKGQQGETLTGRERQVLNMIVMGKSNKEIAQELNISPKTVEKHRGSVMLKLEVHSVAQL 209 Query: 237 IAYAVRNNIV 246 +A A+++ ++ Sbjct: 210 MARALKDGLI 219 >gi|326441021|ref|ZP_08215755.1| transcriptional regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 1010 Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGRE E ++EG T+ EIAV L +S +TV ++ I K ++R+ + +N+ Sbjct: 941 LTGRETEVALLLAEGLTNREIAVRLRLSPSTVATHLNHIRDKLNIRSRTRIALWVTKNH 999 >gi|325290812|ref|YP_004266993.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966213|gb|ADY56992.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 226 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 171 NMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 N FK V F+L T REVE +++G + EIA LGI + TV+ +I +I +K Sbjct: 151 NNFKVPLVANKSMFQLFTSREVEVARLMNKGLQNKEIAAALGIKKRTVDLHIRNIQKKLK 210 Query: 230 TKTRSGAI 237 TR A+ Sbjct: 211 VTTRLEAV 218 >gi|319763114|ref|YP_004127051.1| pas sensor protein [Alicycliphilus denitrificans BC] gi|330825177|ref|YP_004388480.1| LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117675|gb|ADV00164.1| PAS sensor protein [Alicycliphilus denitrificans BC] gi|329310549|gb|AEB84964.1| transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 181 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 25/48 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + +G TS EI L IS TV Y A +MRK T Sbjct: 123 ELTAREREVAARVLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170 >gi|294812526|ref|ZP_06771169.1| regulatory protein, LuxR [Streptomyces clavuligerus ATCC 27064] gi|294325125|gb|EFG06768.1| regulatory protein, LuxR [Streptomyces clavuligerus ATCC 27064] Length = 1013 Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGRE E ++EG T+ EIAV L +S +TV ++ I K ++R+ + +N+ Sbjct: 944 LTGRETEVALLLAEGLTNREIAVRLRLSPSTVATHLNHIRDKLNIRSRTRIALWVTKNH 1002 >gi|293369467|ref|ZP_06616050.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|292635465|gb|EFF53974.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] Length = 219 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208 Query: 243 NNIV 246 IV Sbjct: 209 AGIV 212 >gi|288919617|ref|ZP_06413946.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349015|gb|EFC83263.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 233 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTG+E E + G ++ EIA ++ S +TV ++ +I+RK A + R + +A + + Sbjct: 173 LTGKEREVFFAVVRGLSNTEIARLVFASESTVKTHVGAILRKLALRDRVQIVVFAYEHGV 232 Query: 246 V 246 V Sbjct: 233 V 233 >gi|254491848|ref|ZP_05105027.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010] gi|224463326|gb|EEF79596.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010] Length = 168 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +L+ RE+E L + EGK+ +EI+ +LGIS TV N + I K Sbjct: 106 DLSRRELEILRLLGEGKSMNEISDVLGISYKTVANNLTQIKSK 148 >gi|163119694|ref|YP_081082.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|145903205|gb|AAU25444.2| two-component response regulator [Bacillus licheniformis ATCC 14580] Length = 212 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWI 197 RIR + +F G I+++D + L ++N+ + + D L T RE+ + I Sbjct: 109 RIRDAIKSVF-NGHIVMQDII-----LDKIKSNLAEHKEAEPKIDESLFTERELGIMALI 162 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + G ++ EI+ L IS T+ NYI+SI+ KT + R+ Sbjct: 163 ARGLSNKEISKELFISEGTIANYISSILGKTGLEHRT 199 >gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum] Length = 265 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 183 DF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 DF +L+ RE++CL + G + +I L IS + V Y+AS RK T S A+A A Sbjct: 201 DFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKAT 260 >gi|313675451|ref|YP_004053447.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312942149|gb|ADR21339.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 213 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 38/64 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K ++L+ RE+E + + +G T+ EIA + +S T+ + +I++K +G IA+A Sbjct: 150 KKYKLSRREIEIIQLLKKGLTNQEIADKIFLSVLTIQTHRKNIIQKLEVNNSAGLIAFAH 209 Query: 242 RNNI 245 +NI Sbjct: 210 EHNI 213 >gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I++ T+ EI L +S TV N++++I K TR+ AI A Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRA 213 >gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 214 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G T+ EI+ + +S TV + + I +K KTR+ ++YA+ + Sbjct: 151 QLSNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKTRADLVSYALEHK 210 Query: 245 IV 246 ++ Sbjct: 211 LL 212 >gi|239994578|ref|ZP_04715102.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii ATCC 27126] Length = 225 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+ I++G + EIA L IS NTV ++ SI RKT + R Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNR 206 >gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 226 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+EG ++ EIA L +S TV ++ ++ K + R A+ A + Sbjct: 163 LTPRELDVLRLIAEGASNAEIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGV 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4] Length = 215 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L I+ GK + EIA IL IS V ++ +I +K R+ A+ + Sbjct: 154 LTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGI 209 >gi|326442335|ref|ZP_08217069.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 203 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S + K + R Sbjct: 132 AADAISAGDSPLTAREAEVLALAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRH 191 Query: 235 GAIAYA 240 A+ A Sbjct: 192 TAVRLA 197 >gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] Length = 218 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YAV++ + Sbjct: 153 LTPRELEILGYLAAGHSNKVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQHKV 212 >gi|71735294|ref|YP_274236.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486339|ref|ZP_05640380.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628631|ref|ZP_06461585.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646789|ref|ZP_06478132.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|71555847|gb|AAZ35058.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320324920|gb|EFW80992.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329075|gb|EFW85073.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330867479|gb|EGH02188.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880992|gb|EGH15141.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330988455|gb|EGH86558.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 87 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G + TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|21224647|ref|NP_630426.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|3367740|emb|CAA20065.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 892 Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+GRE + L ++ +++EIA L +S NTV ++ S RK A R A+ A Sbjct: 831 ELSGRERDVLRRLARMMSTEEIAADLYVSINTVKTHLKSAYRKLAVNRRGDAVRRA 886 >gi|47565520|ref|ZP_00236561.1| two-component response regulator [Bacillus cereus G9241] gi|206974929|ref|ZP_03235844.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|217959320|ref|YP_002337868.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|222095459|ref|YP_002529519.1| DNA-binding response regulator, luxr family [Bacillus cereus Q1] gi|229138533|ref|ZP_04267120.1| Response regulator [Bacillus cereus BDRD-ST26] gi|229196045|ref|ZP_04322797.1| Response regulator [Bacillus cereus m1293] gi|47557510|gb|EAL15837.1| two-component response regulator [Bacillus cereus G9241] gi|206746948|gb|EDZ58340.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|217063687|gb|ACJ77937.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|221239517|gb|ACM12227.1| DNA-binding response regulator, LuxR family [Bacillus cereus Q1] gi|228587427|gb|EEK45493.1| Response regulator [Bacillus cereus m1293] gi|228644941|gb|EEL01186.1| Response regulator [Bacillus cereus BDRD-ST26] Length = 212 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047] Length = 224 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 9/75 (12%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR--KT 228 ++ ++YDV LT R+ E L + EG+++ +IA L +S NT+ +++ ++R Sbjct: 148 DLKRAYDV-------LTERQKEILLLLGEGRSNKDIARRLDLSENTIKVHVSGVLRALNL 200 Query: 229 ATKTRSGAIAYAVRN 243 +T++G I +R+ Sbjct: 201 NNRTQAGVIGEKMRH 215 >gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali symbiont] Length = 198 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE++ L ++ G ++ EIA L IS TV +I +++RK ++R A Sbjct: 137 QLTERELDVLQEVARGLSNKEIAATLHISEETVKVHIRNLLRKLDVRSRVAA 188 >gi|329954342|ref|ZP_08295434.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] gi|328527610|gb|EGF54603.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT 12056] Length = 233 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT E L I+ GKT+ EIA +S +TVN++ +I RK + A YA+ Sbjct: 162 QDALLTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLSVNNAHEATKYAM 221 Query: 242 RNNIV 246 + IV Sbjct: 222 KAGIV 226 >gi|319953725|ref|YP_004164992.1| two component transcriptional regulator, luxr family [Cellulophaga algicola DSM 14237] gi|319422385|gb|ADV49494.1| two component transcriptional regulator, LuxR family [Cellulophaga algicola DSM 14237] Length = 209 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 29/43 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +L+ REVE L ++ GK + ++A+ L ++ TV+ Y A +MRK Sbjct: 148 KLSTREVEVLKMLASGKRNKDVAIGLNLNEKTVSTYKARLMRK 190 >gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] Length = 305 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K+ LT RE++ L + G ++ +IA L I+ +TV N++ S++ K TR+ A A A Sbjct: 235 KELVLTSREIQILRLLEMGLSNRDIAEQLCIAVHTVKNHVHSLLAKLGVSTRAQAAALA 293 >gi|74318804|ref|YP_316544.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74058299|gb|AAZ98739.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 210 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E + + EG ++ IA + +S NTV N++ +IM K + R A++ + Sbjct: 148 LTAREMEIVDHVKEGLSNKAIAYKMTLSENTVRNHLRNIMEKLGLRNRVQVATLALKED 206 >gi|42780933|ref|NP_978180.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736854|gb|AAS40788.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 218 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 113 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 167 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 211 >gi|42524246|ref|NP_969626.1| two-component response regulator-like protein [Bdellovibrio bacteriovorus HD100] gi|39576454|emb|CAE80619.1| two-component response regulator homolog [Bdellovibrio bacteriovorus HD100] Length = 226 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 28/42 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE+E + I++GKT+ E+A L S +T+ + ++MRK Sbjct: 166 LTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRK 207 >gi|21222655|ref|NP_628434.1| response regulator [Streptomyces coelicolor A3(2)] gi|8439479|emb|CAB94221.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L REV+ L ++EG + EIA L S TV N + + + + R+ A+AYA+R Sbjct: 157 LGLAPREVDVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALRE 216 Query: 244 NIV 246 + Sbjct: 217 GYI 219 >gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 282 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + T RE L +S+G + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 219 LDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQH 278 Query: 244 NIV 246 + Sbjct: 279 GLT 281 >gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + G + EIA L +S TVN ++A+I +K R+ A++ A+ + Sbjct: 402 LTTRELEVLRLLVRGLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGL 461 Query: 246 V 246 V Sbjct: 462 V 462 >gi|291435968|ref|ZP_06575358.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291338863|gb|EFE65819.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 114 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++ L I+EG + EIA L ++ TV NY S ++K ++++ A+ A + I Sbjct: 10 LVEREIQVLKAIAEGASYAEIAADLILAHATVKNYAHSAIKKLGARSQAHAVHLAYQAGI 69 Query: 246 V 246 + Sbjct: 70 L 70 >gi|329905999|ref|ZP_08274320.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gi|327547387|gb|EGF32216.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 223 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+++ LT I+ K + EIA L +S TV + A IM + + G + AVR+ + Sbjct: 159 LTTRQLQILTMIAGRKGTKEIAFELDLSEKTVAAHRAQIMERLGVRDVVGLVLLAVRHGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|330817027|ref|YP_004360732.1| Two component transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] gi|327369420|gb|AEA60776.1| Two component transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] Length = 215 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ G T +IA LG+S TV+ Y A I+ K + + YA ++ + Sbjct: 149 LSSRELQVLRLIAAGDTVGDIAHQLGLSVKTVSTYKARILEKMKLPHEAALVRYASQHRL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|325067500|ref|ZP_08126173.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] gi|326772178|ref|ZP_08231463.1| nitrate/nitrite response regulator protein NarL [Actinomyces viscosus C505] gi|326638311|gb|EGE39212.1| nitrate/nitrite response regulator protein NarL [Actinomyces viscosus C505] Length = 223 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202 +L +G ++ R ++ L++AYQ+ ++ ++ EL R + T + EG T Sbjct: 124 LLRASRGEPVMSSRPTKM-LVSAYQSEQKRATAEARIQELVNELPPRLRDIYTCLLEGLT 182 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + IA LGIS NTV Y++ ++ + +R+ IA A+ N Sbjct: 183 NRRIARKLGISENTVRIYVSEVLHRLGHTSRTELIAAALGN 223 >gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +LT RE+E L I +G ++ EIA L IS TV N+++SI+ + + R+ Sbjct: 153 DLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRT 202 >gi|289168290|ref|YP_003446559.1| response regulator [Streptococcus mitis B6] gi|288907857|emb|CBJ22697.1| response regulator [Streptococcus mitis B6] Length = 198 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G T D++ + +S+ TV+N++A+I K R AI A Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIA 189 >gi|258623350|ref|ZP_05718354.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM573] gi|258584316|gb|EEW09061.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM573] Length = 214 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ +IA L IS TV +++ I +K K R AIA+ +N Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212 >gi|302531617|ref|ZP_07283959.1| predicted protein [Streptomyces sp. AA4] gi|302440512|gb|EFL12328.1| predicted protein [Streptomyces sp. AA4] Length = 941 Score = 38.5 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 EL+ RE E ++EG+T+ +IA L +S TV ++A ++RK ++R+ Sbjct: 880 ELSPREREVAEMLAEGRTNRQIADGLFLSPRTVEQHVAKVLRKLGARSRT 929 >gi|229017120|ref|ZP_04174036.1| Response regulator [Bacillus cereus AH1273] gi|228744179|gb|EEL94265.1| Response regulator [Bacillus cereus AH1273] Length = 195 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 90 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 143 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188 >gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 237 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS------IMRKTATKTRSGAIA 238 LT RE E L W ++GKT+ EI +I GI+ TV ++ + M KT T++ + Sbjct: 176 LTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 234 >gi|120436463|ref|YP_862149.1| two-component system response regulator [Gramella forsetii KT0803] gi|117578613|emb|CAL67082.1| two-component system response regulator [Gramella forsetii KT0803] Length = 210 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L T IA + +S TV NY S+ K K+R G + +A++ Sbjct: 147 ELTAREMEFLNHACSELTYKAIAGEMNLSPKTVENYRESLFSKLRVKSRVGLVIFAIKEG 206 Query: 245 I 245 I Sbjct: 207 I 207 >gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 237 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E LT S+G +S EIA L IS TVN + +I K ++ AI A R Sbjct: 175 FALTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRK 234 Query: 244 NIV 246 I+ Sbjct: 235 GIL 237 >gi|289662128|ref|ZP_06483709.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 923 Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 36/58 (62%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ +IA L +S NT+ ++ ++ RK ++R A+A A++ ++ Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTIKFHLKNLYRKLDARSRENALAQALQRGLL 909 >gi|182413500|ref|YP_001818566.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840714|gb|ACB74966.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 220 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ RE E L ++EG+++ EIA L I+ TV N++++++ K R+ A Sbjct: 160 LSVREREVLGLLAEGRSNKEIASALAIAEGTVKNHMSNVLGKLGALDRTQA 210 >gi|153825634|ref|ZP_01978301.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|149740664|gb|EDM54771.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] Length = 214 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y F+S+ D LT RE++ L + G ++ +IA L IS TV +++ I Sbjct: 136 LLHYYRYAFQSHQAQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193 Query: 225 MRKTATKTRSGAIAYAVRN 243 +K K R AIA+ +N Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212 >gi|114568884|ref|YP_755564.1| LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114339346|gb|ABI64626.1| transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 141 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K +T RE++ L + G+++ E+A LG+S NTV +IA + K +R AI A Sbjct: 62 KSLAITPRELDVLEALVSGESNKELARTLGVSPNTVKTHIARLFDKLDVTSRIQAIETA 120 >gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator [Pseudomonas fluorescens] Length = 242 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L W+ GK EIAVI IS TV ++++I K A+ A R I Sbjct: 182 LSARELGVLKWVMMGKAYREIAVICAISERTVKFHMSNISGKLQVCNAKQAVYEAQRQGI 241 Query: 246 V 246 + Sbjct: 242 L 242 >gi|21222474|ref|NP_628253.1| LuxR family two component system response regulator [Streptomyces coelicolor A3(2)] gi|289770352|ref|ZP_06529730.1| luxR family two component system response regulator [Streptomyces lividans TK24] gi|5918474|emb|CAB56352.1| luxR family two component system response regulator [Streptomyces coelicolor A3(2)] gi|289700551|gb|EFD67980.1| luxR family two component system response regulator [Streptomyces lividans TK24] Length = 200 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA ++ TV NY++S K + R Sbjct: 129 AADAISAGDSPLTAREAEVLEHAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRH 188 Query: 235 GAI 237 A+ Sbjct: 189 AAV 191 >gi|84497370|ref|ZP_00996192.1| putative two component response regulator [Janibacter sp. HTCC2649] gi|84382258|gb|EAP98140.1| putative two component response regulator [Janibacter sp. HTCC2649] Length = 245 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G++F LT RE E + ++ G ++ EIA +S N+V +YI S R +RS A+ + Sbjct: 153 GREFGLTPRESEIIALVTAGLSNLEIAERTYLSINSVKSYIRSAYRTMDVTSRSKAVLWG 212 Query: 241 VRNNI 245 + + + Sbjct: 213 IDHGM 217 >gi|333024715|ref|ZP_08452779.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744567|gb|EGJ75008.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 203 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 WG L+ RE E + I+ G + +IA I+ TV N+I I K T TRS AIA Sbjct: 132 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 188 >gi|291447895|ref|ZP_06587285.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291350842|gb|EFE77746.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 933 Score = 38.5 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +L+ RE E S G T+ EIA L +S TV +IA MRKT +R Sbjct: 878 QLSPREAEVAQLASSGLTNREIAATLHLSPRTVEQHIAGAMRKTGALSR 926 >gi|258626995|ref|ZP_05721793.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM603] gi|258580669|gb|EEW05620.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM603] Length = 214 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ +IA L IS TV +++ I +K K R AIA+ +N Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212 >gi|239944429|ref|ZP_04696366.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239990886|ref|ZP_04711550.1| large transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 936 Score = 38.5 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +L+ RE E S G T+ EIA L +S TV +IA MRKT +R Sbjct: 881 QLSPREAEVAQLASSGLTNREIAATLHLSPRTVEQHIAGAMRKTGALSR 929 >gi|228958121|ref|ZP_04119856.1| Response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801638|gb|EEM48520.1| Response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 212 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002] gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002] Length = 232 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + YA+++ Sbjct: 169 IDLTPREQSVLDLVAQGLMNKEIAKELETSVRNVEKYVSRLFSKTGTNSRTELVRYALKH 228 Query: 244 NI 245 + Sbjct: 229 GL 230 >gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein [Mycobacterium avium 104] gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104] Length = 221 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA L +S TV N++ + RK R YA+ + + Sbjct: 158 LTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 221 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA L +S TV N++ + RK R YA+ + + Sbjct: 158 LTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum] Length = 244 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +S G+T E++ ILGIS TV +I + +RK AI A+ N+ Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 237 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS------IMRKTATKTRSGAIA 238 LT RE E L W ++GKT+ EI +I GI+ TV ++ + M KT T++ + Sbjct: 176 LTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 234 >gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 212 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L +++EG T+ EIA + ++ TV NY++S++ K + R+ A A R Sbjct: 150 LTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATR 206 >gi|324325861|gb|ADY21121.1| LuxR family DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 212 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|300716382|ref|YP_003741185.1| two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] gi|299062218|emb|CAX59335.1| Two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] Length = 205 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 178 VHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ +DF+L T RE++ L + GK++ IA L +S T++ Y SIM K T+ Sbjct: 134 INKDRDFQLMLSFTNRELQILRELGAGKSNKIIAGELLLSSKTISTYKRSIMNKLQTQKV 193 Query: 234 SGAIAYAVRNN 244 I +A RN Sbjct: 194 RDVIDFARRNG 204 >gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 224 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L I+ GK + EIA IL IS V ++ +I +K R+ A+ + Sbjct: 163 LTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGI 218 >gi|307150230|ref|YP_003885614.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] gi|306980458|gb|ADN12339.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 237 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 W K +LT RE++ ++ +++G T+ EI L I++N+V + I RK ++R+ +A Sbjct: 175 WAK--KLTSRELQIISLVAQGLTNTEIGQELWITQNSVKQALKRIFRKLDVRSRAQMVA 231 >gi|167902027|ref|ZP_02489232.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] Length = 279 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|153807885|ref|ZP_01960553.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185] gi|149129494|gb|EDM20708.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185] Length = 219 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+ Sbjct: 148 EDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAM 207 Query: 242 RNNIV 246 R IV Sbjct: 208 RAGIV 212 >gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + + Sbjct: 162 LTGREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 244 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE E L +++G + EIA L +SR TV +I I RK A +R+ A+ Sbjct: 183 LSPREGEILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAV 234 >gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426] gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 549 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 10/89 (11%) Query: 165 LAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRN 215 LAA A M S H G D +LT RE++ L + +G ++ EI+ L IS + Sbjct: 456 LAAIGAMMI-SGKAHGGNDGTVNIDMLSEQLTAREMDVLELLIQGCSNREISERLFISVH 514 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244 TV N+I +I +K RS IA + N Sbjct: 515 TVKNHITNIFQKIGVNDRSQLIALVYQLN 543 >gi|84684780|ref|ZP_01012680.1| transcriptional regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667115|gb|EAQ13585.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 198 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 4/104 (3%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 I MLLF +G R+ E A F + + ++ELT E + ++ +G Sbjct: 84 ISGMLLFREGH----KRMMEAERRMNAAAGEFHEHLLSQFDEWELTPTEKDIALYVVKGF 139 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ EIA + G + +TV + +++I RK+ +R +AV + I Sbjct: 140 SNLEIASLRGTTESTVKSQVSAIFRKSGVNSRQQLATWAVEDLI 183 >gi|330875631|gb|EGH09780.1| regulatory protein, LuxR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 87 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E + L W++ GKT+ EIA I + TV+ + +I RK + S A+ A+R + Sbjct: 24 LTVKERQVLEWVAAGKTAWEIARIQECTEATVHFHTCNIRRKFDVHSLSAALVMAIRQGV 83 Query: 246 V 246 + Sbjct: 84 I 84 >gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] Length = 267 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D L RE CL W + GKT +EI IL IS +TV ++ S + T + +A A+ Sbjct: 189 DVHLPLREASCLRWKALGKTDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKAL 247 >gi|321157306|emb|CBW39288.1| Response regulator [Streptococcus pneumoniae] Length = 198 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G T D++ + +S+ TV+N++A+I K R AI A Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIA 189 >gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] Length = 234 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L +SEG + +IA L +SR+T+ +I +I RK A +R+ A A A R Sbjct: 173 LSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQA-AQAARQ 229 >gi|270295166|ref|ZP_06201367.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274413|gb|EFA20274.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 210 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVI 209 LRD + + Y +N+F D EL+ RE E L ++S+G ++ EI+ + Sbjct: 116 LRDAISTLKNGTRYFSNVFSELDKEKQNTLPHALPELSRREKEVLAYLSQGLSTSEISQL 175 Query: 210 LGISRNTVNNYIASIMRKTATK 231 L +S NT+ Y +M K K Sbjct: 176 LFLSINTIQTYRKRLMEKLEAK 197 >gi|256785041|ref|ZP_05523472.1| regulatory protein [Streptomyces lividans TK24] gi|289768934|ref|ZP_06528312.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] gi|289699133|gb|EFD66562.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] Length = 166 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LTGRE + L +S+G+T+ +IA L IS T + ++++I+ K R A A A R Sbjct: 95 LTGRERDVLRLVSDGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHR 151 >gi|206562484|ref|YP_002233247.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038524|emb|CAR54482.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 215 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ + I G+T +IA L +S TV+ Y I+ K A + I YAVR+++ Sbjct: 149 LSARELDVMRRIVAGQTVTQIAFELALSAKTVSTYKTRILDKMALPHEAALIRYAVRHDL 208 >gi|168184300|ref|ZP_02618964.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Bf] gi|237794731|ref|YP_002862283.1| LuxR family DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672663|gb|EDT84624.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Bf] gi|229261330|gb|ACQ52363.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Ba4 str. 657] Length = 217 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+ + I+ G ++ EIA + +S T+ N I++I+ K + R+ +A +N Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213 Query: 244 NI 245 NI Sbjct: 214 NI 215 >gi|167836083|ref|ZP_02462966.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 279 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|329926657|ref|ZP_08281068.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939066|gb|EGG35431.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 216 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +++ LT RE++ ++E K + EIA +L I+ TV NYI+ I K R+ AI Sbjct: 150 QNYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205 >gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 209 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE++ L ++EG T+ +IA L +S TV +++ K +R+ A+A A + Sbjct: 148 LSGRELDVLRLVAEGGTNRDIARALFLSEATVKSHLVHAFGKLGVTSRTAAVATARSRGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|293375961|ref|ZP_06622221.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325841957|ref|ZP_08167534.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|292645398|gb|EFF63448.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325489790|gb|EGC92145.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 214 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q KS D + + + L+ +E+ + I+ G T+ EIA L +S T+ N+I +I+ K Sbjct: 138 QTTSIKS-DAQFYEQYRLSEKELMIIREIATGLTNKEIAAKLFLSEGTIKNHITNILFKL 196 Query: 229 ATKTRSGAIAYAVRNNI 245 + R+ +A +N + Sbjct: 197 ELRDRTQIAIFAFKNGL 213 >gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L +++EG T+ EIA + ++ TV NY++S++ K + R+ A A R Sbjct: 150 LTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATR 206 >gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 228 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + + Sbjct: 163 LTGREREVLVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGL 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length = 215 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + +T +++G + +IA L ++R+T+ ++ S+ K R A+A A+R + Sbjct: 154 LTEREAQVITMMADGLSVPQIASRLHLARSTIKTHVHSLYEKLGVSDRGAAVAEAMRRRL 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|160891745|ref|ZP_02072748.1| hypothetical protein BACUNI_04200 [Bacteroides uniformis ATCC 8492] gi|317478188|ref|ZP_07937356.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156859152|gb|EDO52583.1| hypothetical protein BACUNI_04200 [Bacteroides uniformis ATCC 8492] gi|316905640|gb|EFV27426.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 210 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVI 209 LRD + + Y +N+F D EL+ RE E L ++S+G ++ EI+ + Sbjct: 116 LRDAISTLKNGTRYFSNVFSELDKEKQNTLPHALPELSRREKEVLAYLSQGLSTSEISQL 175 Query: 210 LGISRNTVNNYIASIMRKTATK 231 L +S NT+ Y +M K K Sbjct: 176 LFLSINTIQTYRKRLMEKLEAK 197 >gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 218 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 212 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE L ++EGK+S E+A IL IS TV + +I K + + YAV I Sbjct: 151 LSRREEAILKLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKYAVEKGI 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 199 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ +E+ L + G +S EIA L +S TV NY++SI+ K A + R A+ A N Sbjct: 139 LSNQEILVLQAAARGLSSKEIAQKLYLSNGTVRNYMSSILTKLAAENRLEAVRIAQEN 196 >gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13] Length = 214 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L + +G T+ EI+ L I TV ++++I+ K R+ A YA R+ Sbjct: 149 DLTDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNILGKLQVADRTQAAIYANRHG 208 Query: 245 IV 246 ++ Sbjct: 209 VL 210 >gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 218 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +EG TS EIA L IS TV + ++M K +++ I YAV+ + Sbjct: 153 LTDRERQILHLTAEGYTSREIAERLFISPRTVEKHRENLMAKLDIHSQAELIHYAVQRGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|126727851|ref|ZP_01743680.1| two component transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126702873|gb|EBA01977.1| two component transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 232 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT ++ L I EGK + +IA L I+ TV ++ +IMRK +R+ A+ A Sbjct: 166 LTNQQARILELICEGKLNKQIAFELTIAETTVKAHVTAIMRKLQVHSRTQAVLVA 220 >gi|30316455|gb|AAP31397.1| hypothetical two-components response regulator protein [Pseudomonas putida] Length = 217 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT R+ E L I++GKT+ EIA L IS TV +++S+++ +R+ A Sbjct: 159 QLTHRQQEVLRLIAQGKTNKEIAKALSISPFTVRIHVSSLLKLLGVSSRTAA 210 >gi|83942258|ref|ZP_00954719.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. EE-36] gi|83846351|gb|EAP84227.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. EE-36] Length = 220 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L +++GK++ E+A+ L IS TV + +I RK + +G YA+ + + Sbjct: 153 LTEREQTILLQLAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|126453676|ref|YP_001065612.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134283901|ref|ZP_01770597.1| putative DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167718883|ref|ZP_02402119.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167737890|ref|ZP_02410664.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167815073|ref|ZP_02446753.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167823489|ref|ZP_02454960.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167845041|ref|ZP_02470549.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167893583|ref|ZP_02480985.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167910266|ref|ZP_02497357.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|217419942|ref|ZP_03451448.1| putative DNA-binding response regulator [Burkholderia pseudomallei 576] gi|242316523|ref|ZP_04815539.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254181152|ref|ZP_04887749.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254190516|ref|ZP_04897023.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254195131|ref|ZP_04901560.1| putative DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254257993|ref|ZP_04949047.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|126227318|gb|ABN90858.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134244690|gb|EBA44788.1| putative DNA-binding response regulator [Burkholderia pseudomallei 305] gi|157938191|gb|EDO93861.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|169651879|gb|EDS84572.1| putative DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184211690|gb|EDU08733.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217397246|gb|EEC37262.1| putative DNA-binding response regulator [Burkholderia pseudomallei 576] gi|242139762|gb|EES26164.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254216682|gb|EET06066.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 279 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|332291348|ref|YP_004429957.1| two component transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] gi|332169434|gb|AEE18689.1| two component transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] Length = 209 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 7/96 (7%) Query: 155 LRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 L + L E+ L Y N + KS + + KD L RE+E + T +EIA + Sbjct: 113 LENALNELALNGYYHTNTVSQLLVKSLNGN-NKD-ALRDREIEFIKHACTEMTYNEIADV 170 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + +S TV Y S+ K K R+G + YA++N + Sbjct: 171 MFLSPKTVQGYRDSVFSKLNLKNRTGLVIYALKNGL 206 >gi|328886123|emb|CCA59362.1| putative LuxR-family transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 271 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + LT ++ G T+ A LG+ TV Y+ S MRK TR Sbjct: 210 LTPRERDVLTAVASGATNATAATRLGLRPETVKGYLRSAMRKLGAHTR 257 >gi|307565431|ref|ZP_07627920.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS 21A-A] gi|307345881|gb|EFN91229.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS 21A-A] Length = 200 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE+E L+ I +G + EIA L IS TV + +IM K ++ S YAV Sbjct: 131 KNKLLSNREIEVLSLIVQGMINKEIADKLNISLTTVITHRKNIMDKLGMRSVSALTIYAV 190 Query: 242 RNNIV 246 + V Sbjct: 191 MHGYV 195 >gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S GKT EIA+IL I +TV +I ++++K AI V Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236 >gi|222098587|ref|YP_002532645.1| two-component response regulator [Bacillus cereus Q1] gi|221242646|gb|ACM15356.1| two-component response regulator [Bacillus cereus Q1] Length = 217 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T +E+E L I++GK++ +IA L +S V + + +K +RS A+A AVR I Sbjct: 153 ITQKELEILESIAKGKSNKQIADELYMSSRAVEYNLTKLFKKFKVSSRSEALAEAVRKGI 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|83721051|ref|YP_441647.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167580458|ref|ZP_02373332.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|257139656|ref|ZP_05587918.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83654876|gb|ABC38939.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 279 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|3868876|dbj|BAA34262.1| response regulator [Rhodococcus erythropolis] Length = 209 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E + ++ G T+ E+A L +S TV ++ ASI RK +TR+ Sbjct: 148 LSARELEVMRMVAAGLTTSEVAERLTVSPRTVESHRASIQRKLHVRTRA 196 >gi|293194682|ref|ZP_06610050.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292819661|gb|EFF78680.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 213 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L + G T +IA LG+S+ TV N+++S M K +TR Sbjct: 153 LTDREADVLREVEGGGTIADIAHSLGLSQGTVRNHVSSSMLKMDARTR 200 >gi|295677054|ref|YP_003605578.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] gi|295436897|gb|ADG16067.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 181 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168 >gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 223 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++EG ++ +IA + +S TV N+ ++M+K ++ + YA R + Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216 Query: 246 V 246 + Sbjct: 217 I 217 >gi|154508409|ref|ZP_02044051.1| hypothetical protein ACTODO_00906 [Actinomyces odontolyticus ATCC 17982] gi|153798043|gb|EDN80463.1| hypothetical protein ACTODO_00906 [Actinomyces odontolyticus ATCC 17982] Length = 213 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L + G T +IA LG+S+ TV N+++S M K +TR Sbjct: 153 LTDREADVLREVEGGGTIADIAHSLGLSQGTVRNHVSSSMLKMDARTR 200 >gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 218 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|317473872|ref|ZP_07933152.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316909949|gb|EFV31623.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 223 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E L I+ GKT+ EIAV +S +T+N++ +I RK A YA++ I Sbjct: 156 LTPAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKAGI 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|326778684|ref|ZP_08237949.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326659017|gb|EGE43863.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 400 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE E +I+ G + EIA L +S +TV ++I ++ K +R Sbjct: 301 YELTDRETEVTQFIARGLPTGEIAAQLRLSPHTVRDHIKAVFEKVGVSSRG 351 >gi|262172512|ref|ZP_06040190.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451] gi|261893588|gb|EEY39574.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451] Length = 214 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ +IA L IS TV +++ I +K K R AIA+ +N Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212 >gi|256784144|ref|ZP_05522575.1| transcriptional regulator [Streptomyces lividans TK24] Length = 812 Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+GRE + L ++ +++EIA L +S NTV ++ S RK A R A+ A Sbjct: 751 ELSGRERDVLRRLARMMSAEEIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVRRA 806 >gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 251 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I +G ++ EIA L I+ TV ++ +I+ K R+ A A+R+ + Sbjct: 190 LTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 249 Query: 246 V 246 V Sbjct: 250 V 250 >gi|167618566|ref|ZP_02387197.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] Length = 279 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv. tabaci] Length = 232 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ Sbjct: 178 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 230 >gi|1916865|gb|AAB52544.1| response regulator BpdT [Rhodococcus sp. M5] Length = 209 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E + ++ G T+ E+A L +S TV ++ ASI RK +TR+ Sbjct: 148 LSARELEVMRMVAAGLTTSEVAERLTVSPRTVESHRASIQRKLHVRTRA 196 >gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 213 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E L I G ++ EIA L + T+ ++ I +K K RS A AVR +V Sbjct: 149 TSREMEVLALIVAGASNKEIARQLDLQEVTIKLHLTRIFQKLGVKNRSHAAVTAVRGGLV 208 >gi|289768026|ref|ZP_06527404.1| transcriptional regulator [Streptomyces lividans TK24] gi|289698225|gb|EFD65654.1| transcriptional regulator [Streptomyces lividans TK24] Length = 895 Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+GRE + L ++ +++EIA L +S NTV ++ S RK A R A+ A Sbjct: 834 ELSGRERDVLRRLARMMSAEEIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVRRA 889 >gi|258624077|ref|ZP_05719029.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|258583687|gb|EEW08484.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] Length = 310 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D +LT RE E L + GK IA ++GIS TV Y A + K ++ I A Sbjct: 224 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 283 Query: 241 V 241 + Sbjct: 284 L 284 >gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TGRE E L ++ G T+ EIA L + TV +++++++ K + R+ A+ A + V Sbjct: 158 TGREGEVLRLMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217 >gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA L +S TV N++ + RK R YA+ + + Sbjct: 157 LTERETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216 >gi|269125504|ref|YP_003298874.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310462|gb|ACY96836.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 203 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE E + I+ G+++ EIA L +S TV N++ I K +R+ AIA Sbjct: 126 LSAREAEVMDLIATGRSNGEIARQLFLSEKTVKNHVNRIYAKLGVTSRASAIA 178 >gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 260 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 159 LWEIGLLA------AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + + GLLA AY +F S + GK LT RE ECL +EG ++ EI+ I+ Sbjct: 162 IADFGLLAHVFHETAYA--LFDSSERSVGK-MRLTERERECLRHSAEGLSAKEISRIIDR 218 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAV 241 S TV ++ S +K K R+ A+ A Sbjct: 219 SVPTVVMHLNSAAKKLGAKNRTQAVVRAT 247 >gi|261406784|ref|YP_003243025.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283247|gb|ACX65218.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 216 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +++ LT RE++ ++E K + EIA +L I+ TV NYI+ I K R+ AI Sbjct: 150 QNYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205 >gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 232 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 169 IDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 228 Query: 244 NI 245 + Sbjct: 229 GL 230 >gi|126440864|ref|YP_001058373.1| putative DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126220357|gb|ABN83863.1| putative DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 279 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|53726081|ref|YP_103403.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121601196|ref|YP_992504.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124385129|ref|YP_001026695.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126450323|ref|YP_001080022.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|167000332|ref|ZP_02266150.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254175606|ref|ZP_04882266.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254202076|ref|ZP_04908439.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254207407|ref|ZP_04913757.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254359829|ref|ZP_04976099.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52429504|gb|AAU50097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121230006|gb|ABM52524.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124293149|gb|ABN02418.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126243193|gb|ABO06286.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147746323|gb|EDK53400.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147751301|gb|EDK58368.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148029069|gb|EDK86974.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|160696650|gb|EDP86620.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|243063667|gb|EES45853.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 279 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|331010621|gb|EGH90677.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 87 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G + TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|298245015|ref|ZP_06968821.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552496|gb|EFH86361.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 931 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L +++G T+ +IA L +S T ++ASI+ K + R A+A A +++ Sbjct: 872 TRREEEVLRLLAQGATNQDIARQLVVSLGTAKKHVASILSKLGAENRLQAVARAHERSLL 931 >gi|298250270|ref|ZP_06974074.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548274|gb|EFH82141.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 596 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 ++G L Y + + + + + T RE E + + +G ++ EIA L IS TV + Sbjct: 498 QLGNLTNYYSAVQTTPTLKHARRELFTQRENEVINLLLQGASNREIAAKLIISEGTVKKH 557 Query: 221 IASIMRKTATKTRSGAIA 238 +A+I K K+R+ A+A Sbjct: 558 VANICGKLEVKSRTQALA 575 >gi|294675445|ref|YP_003576061.1| LuxR family transcriptional regulator [Prevotella ruminicola 23] gi|294472990|gb|ADE82379.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23] Length = 213 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E E + I++GKT+ EIA S +T+ + +I RK T I YA+R + Sbjct: 146 LTATEAEIVKAIAQGKTTKEIAEERFSSIHTITTHRKNIFRKLGINTAHELIKYAIRAGL 205 Query: 246 V 246 V Sbjct: 206 V 206 >gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] Length = 219 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180 G+D R LT AR + M+ +L+D EI L LAA +F + Sbjct: 86 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLAAKGEPVFSDEVAQY 145 Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 146 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 205 Query: 233 RSGA 236 R A Sbjct: 206 RVAA 209 >gi|228984929|ref|ZP_04145099.1| Response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774879|gb|EEM23275.1| Response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 212 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|167918297|ref|ZP_02505388.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 279 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2] Length = 260 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G+T+ EIA L I+ TV +++ I+ K + R+ A+ A + Sbjct: 193 DLTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRILYKLDIRDRAQAVIAAYESG 252 Query: 245 IV 246 +V Sbjct: 253 LV 254 >gi|330995249|ref|ZP_08319160.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila YIT 11841] gi|329575966|gb|EGG57486.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila YIT 11841] Length = 209 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I G T+ EIA L I TV ++ +IM K ++ SG YAV N Sbjct: 144 LSQREIEVLILIVRGLTNKEIADHLCIGTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGY 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|307706263|ref|ZP_07643077.1| competence protein A [Streptococcus mitis SK321] gi|307618354|gb|EFN97507.1| competence protein A [Streptococcus mitis SK321] Length = 198 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G T D++ + +S+ TV+N++A+I K R AI A Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIA 189 >gi|288926074|ref|ZP_06420002.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] gi|288337114|gb|EFC75472.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] Length = 208 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L+ +++GK + EI L I TV + +I K K+ S YAV Sbjct: 143 LTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALTIYAV 198 >gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 215 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +LT RE+E L I +G ++ EIA L IS TV N+++SI+ + + R+ Sbjct: 152 DLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRT 201 >gi|229011126|ref|ZP_04168319.1| Response regulator [Bacillus mycoides DSM 2048] gi|229166685|ref|ZP_04294435.1| Response regulator [Bacillus cereus AH621] gi|228616682|gb|EEK73757.1| Response regulator [Bacillus cereus AH621] gi|228750009|gb|EEL99841.1| Response regulator [Bacillus mycoides DSM 2048] Length = 212 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|212640042|ref|YP_002316562.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561522|gb|ACJ34577.1| DNA-binding response regulator, NarL family, with truncated N-terminal REC domain [Anoxybacillus flavithermus WK1] Length = 165 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L E+ L +S T+ +I+ L IS+ TV +++S K +R+GAIA A+R Sbjct: 103 KLNDTEIRILQMVSNDFTNRQISEKLNISKRTVERHLSSCFEKLGAHSRAGAIAAAMRLK 162 Query: 245 IV 246 ++ Sbjct: 163 LI 164 >gi|171911132|ref|ZP_02926602.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 235 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E ISEGK++ +I L IS TV + A I K + + + YAVR Sbjct: 169 LSDREFEVFQLISEGKSTQQIGDALNISVKTVEVHRAHIREKLKLEDGASVLRYAVR 225 >gi|75763478|ref|ZP_00743197.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896774|ref|YP_002445185.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] gi|74489035|gb|EAO52532.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541910|gb|ACK94304.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] Length = 223 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 118 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 171 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 172 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 216 >gi|333023954|ref|ZP_08452018.1| putative CitB protein [Streptomyces sp. Tu6071] gi|332743806|gb|EGJ74247.1| putative CitB protein [Streptomyces sp. Tu6071] Length = 77 Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ E + + G T+ E A LGIS+ TV+ ++ R+ T+S + AV I Sbjct: 15 LTPRQTEVVRLAALGLTAKETARRLGISKTTVDEHLTEARRRVGASTKSHLVGLAVAAGI 74 Query: 246 V 246 V Sbjct: 75 V 75 >gi|320533376|ref|ZP_08034066.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320134393|gb|EFW26651.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 246 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 42/80 (52%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A A+ S+ D LT RE+E L +++G ++ E+A L + T+ ++ +M+ Sbjct: 165 AGGASGHASFAGAASVDVALTSRELEVLRLLAQGMSNGEMARHLYVEPTTIKYHLTGLMQ 224 Query: 227 KTATKTRSGAIAYAVRNNIV 246 KT ++ R + + +R +V Sbjct: 225 KTGSRDRLQTVLWGIRAGLV 244 >gi|307708433|ref|ZP_07644899.1| SalR [Streptococcus mitis NCTC 12261] gi|307615532|gb|EFN94739.1| SalR [Streptococcus mitis NCTC 12261] Length = 198 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G T D++ + +S+ TV+N++A+I K R AI A Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIA 189 >gi|238791009|ref|ZP_04634737.1| LuxR family transcription regulatory protein [Yersinia frederiksenii ATCC 33641] gi|238720898|gb|EEQ12610.1| LuxR family transcription regulatory protein [Yersinia frederiksenii ATCC 33641] Length = 202 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 RE E L +I +S+EIA L +SR TVNN I +I RK+ ++ I Sbjct: 154 REWEVLFYILHAFSSNEIAEKLHLSRRTVNNVIQNIYRKSGVTSKKQII 202 >gi|307153815|ref|YP_003889199.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984043|gb|ADN15924.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 744 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT E+E L I+EG +SDE+A LGI+ N + ++A+I+ + Sbjct: 687 LTQTELEVLRLIAEGTSSDEMAQQLGITLNMIKTHLANILNR 728 >gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 232 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 169 IDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 228 Query: 244 NIV 246 + Sbjct: 229 GLT 231 >gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 247 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ I LGIS +TV ++ +++ K ++R+ A+ A+R + Sbjct: 184 LTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQAVVQAIRRGL 243 Query: 246 V 246 + Sbjct: 244 L 244 >gi|126728963|ref|ZP_01744778.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] gi|126710893|gb|EBA09944.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] Length = 298 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT ++ E L I G +IA LG+S + V +AS+ KT + R+ A R Sbjct: 198 QLTAKQKELLCLIGHGMMDKQIAHKLGVSFSAVRQRLASVQAKTGAQNRADLAGLAARIG 257 Query: 245 IV 246 +V Sbjct: 258 LV 259 >gi|70731589|ref|YP_261330.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345888|gb|AAY93494.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 208 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+ L + G+T+ EIA + +S TV+ Y IM+K AT + S + A RN + Sbjct: 148 LNDRELMVLQLFAMGQTNKEIAAGMFLSNKTVSTYKKRIMQKLATTSMSELVDMAKRNAL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|319937288|ref|ZP_08011695.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319807654|gb|EFW04247.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 67 Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E T ++ KT+ +IA L IS TV N+I+++++K ++R A+ Sbjct: 5 LTKREKEIFTLLTFNKTTKQIAEELCISEKTVRNHISNVIQKLGVESRIQAV 56 >gi|293410555|ref|ZP_06654131.1| transcriptional regulator NarP [Escherichia coli B354] gi|293446543|ref|ZP_06662965.1| two-component system [Escherichia coli B088] gi|291323373|gb|EFE62801.1| two-component system [Escherichia coli B088] gi|291471023|gb|EFF13507.1| transcriptional regulator NarP [Escherichia coli B354] Length = 236 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 175 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 225 >gi|255008092|ref|ZP_05280218.1| putative transcriptional regulatory protein [Bacteroides fragilis 3_1_12] gi|313145809|ref|ZP_07808002.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313134576|gb|EFR51936.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 225 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E L I+ GKT+ EIA +S +T+N++ +I RK AI YA+R I Sbjct: 158 LTPTEKIILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEAIKYAMRAGI 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|229029518|ref|ZP_04185599.1| Response regulator [Bacillus cereus AH1271] gi|228731800|gb|EEL82701.1| Response regulator [Bacillus cereus AH1271] Length = 212 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEEECKIDTSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|229059483|ref|ZP_04196866.1| Response regulator [Bacillus cereus AH603] gi|228719849|gb|EEL71441.1| Response regulator [Bacillus cereus AH603] Length = 212 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|209516681|ref|ZP_03265534.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209502956|gb|EEA02959.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 181 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168 >gi|331699719|ref|YP_004335958.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954408|gb|AEA28105.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 313 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 +LT +AR+R + L ++ RD + + + A + +V LT RE Sbjct: 204 AALTAAIARVRGPVRHL-----LVHRDATYALEMYRARSGVVVLHREV--APPAGLTVRE 256 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ L +++G ++ EIA LG+ TV ++ ++ KT + R Sbjct: 257 LQVLAALADGSSNGEIAGALGVGARTVATHVEHVLAKTGCRNR 299 >gi|315608347|ref|ZP_07883336.1| transcriptional regulator [Prevotella buccae ATCC 33574] gi|315249977|gb|EFU29977.1| transcriptional regulator [Prevotella buccae ATCC 33574] Length = 222 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L+ +++GK + EI L I TV + +I K K+ S YAV Sbjct: 157 LTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALTIYAV 212 >gi|302557561|ref|ZP_07309903.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475179|gb|EFL38272.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 892 Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+GRE + L ++ +++EIA L +S NTV ++ S+ RK + R+ A+ A Sbjct: 832 LSGRERDVLRRLARAMSTEEIAADLYVSVNTVKTHLKSVYRKLSVNRRNEAVRRA 886 >gi|293415492|ref|ZP_06658135.1| two-component system [Escherichia coli B185] gi|291433140|gb|EFF06119.1| two-component system [Escherichia coli B185] Length = 225 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] Length = 222 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE++ L ++ G ++ ++AV L IS TV +I +++RK ++R A Sbjct: 161 DLTERELDVLQEVARGMSNKQVAVQLHISEETVKVHIRNMLRKLDVRSRVAA 212 >gi|238791008|ref|ZP_04634736.1| LuxR family transcription regulatory protein [Yersinia frederiksenii ATCC 33641] gi|238720897|gb|EEQ12609.1| LuxR family transcription regulatory protein [Yersinia frederiksenii ATCC 33641] Length = 230 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 28/60 (46%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L +I +S EIA L +S +VNN I I K R A+ Y N I Sbjct: 153 FSKREWEVLFYILHAFSSREIAKRLQLSSGSVNNIIQKIYSKAGVTNRRQAVEYCYENKI 212 >gi|238028111|ref|YP_002912342.1| putative DNA-binding response regulator [Burkholderia glumae BGR1] gi|237877305|gb|ACR29638.1| Putative DNA-binding response regulator [Burkholderia glumae BGR1] Length = 276 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 157 LSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 209 >gi|297200745|ref|ZP_06918142.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712315|gb|EDY56349.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 202 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S + K + R Sbjct: 131 AADAISAGDSPLTVREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRH 190 Query: 235 GAIAYA 240 A+ A Sbjct: 191 AAVRLA 196 >gi|15802746|ref|NP_288773.1| transcriptional regulator NarP [Escherichia coli O157:H7 EDL933] gi|15832336|ref|NP_311109.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. Sakai] gi|168749599|ref|ZP_02774621.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4113] gi|168754943|ref|ZP_02779950.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4401] gi|168764687|ref|ZP_02789694.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4501] gi|168767816|ref|ZP_02792823.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4486] gi|168773087|ref|ZP_02798094.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4196] gi|168780045|ref|ZP_02805052.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4076] gi|168789011|ref|ZP_02814018.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC869] gi|168802408|ref|ZP_02827415.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC508] gi|195935573|ref|ZP_03080955.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. EC4024] gi|208807826|ref|ZP_03250163.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4206] gi|208812712|ref|ZP_03254041.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4045] gi|208820974|ref|ZP_03261294.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4042] gi|209398167|ref|YP_002271605.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4115] gi|217326666|ref|ZP_03442749.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. TW14588] gi|254794092|ref|YP_003078929.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. TW14359] gi|261223349|ref|ZP_05937630.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. FRIK2000] gi|261259101|ref|ZP_05951634.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. FRIK966] gi|291283444|ref|YP_003500262.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7 str. CB9615] gi|12516525|gb|AAG57328.1|AE005452_1 nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli O157:H7 str. EDL933] gi|13362551|dbj|BAB36505.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. Sakai] gi|187771336|gb|EDU35180.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4196] gi|188016073|gb|EDU54195.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4113] gi|189002090|gb|EDU71076.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4076] gi|189357613|gb|EDU76032.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4401] gi|189362901|gb|EDU81320.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4486] gi|189365348|gb|EDU83764.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4501] gi|189371341|gb|EDU89757.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC869] gi|189375588|gb|EDU94004.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC508] gi|208727627|gb|EDZ77228.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4206] gi|208733989|gb|EDZ82676.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4045] gi|208741097|gb|EDZ88779.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4042] gi|209159567|gb|ACI37000.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4115] gi|209765848|gb|ACI81236.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765850|gb|ACI81237.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765852|gb|ACI81238.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765854|gb|ACI81239.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765856|gb|ACI81240.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|217319033|gb|EEC27458.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. TW14588] gi|254593492|gb|ACT72853.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. TW14359] gi|290763317|gb|ADD57278.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7 str. CB9615] gi|320192180|gb|EFW66825.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. EC1212] gi|320641261|gb|EFX10739.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. G5101] gi|320646534|gb|EFX15450.1| transcriptional regulator NarP [Escherichia coli O157:H- str. 493-89] gi|320651905|gb|EFX20280.1| transcriptional regulator NarP [Escherichia coli O157:H- str. H 2687] gi|320657630|gb|EFX25428.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663086|gb|EFX30399.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. USDA 5905] gi|320667986|gb|EFX34889.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. LSU-61] gi|326339547|gb|EGD63358.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. 1125] gi|326344008|gb|EGD67769.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. 1044] Length = 215 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] Length = 215 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|329938783|ref|ZP_08288179.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302274|gb|EGG46166.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 212 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L + ++G EIA ++ TV NY++S + K + R A+ A Sbjct: 149 DSPLTAREAEVLEFAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGVENRHAAVRLA 206 >gi|313675285|ref|YP_004053281.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312941983|gb|ADR21173.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 215 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++ RE E L I + ++ EIA L IS TV + ++M KT +KT +G + YA+ N Sbjct: 152 ISKREKEVLRLIIDELSNQEIADKLFISIRTVEAHKRNLMEKTGSKTLAGLVKYAINN 209 >gi|299538246|ref|ZP_07051531.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298726448|gb|EFI67038.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 206 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 35/72 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + KD L +E + L I+EG T+ IA+ L I + T Y+ + +R+ Sbjct: 135 KFKLQGAKDIHLNEKEKKILRLIAEGHTNKAIAIELNIPQRTTERYLTQLFSLLNVDSRT 194 Query: 235 GAIAYAVRNNIV 246 A+ A R N++ Sbjct: 195 EAVNLAERMNLL 206 >gi|294631904|ref|ZP_06710464.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292835237|gb|EFF93586.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 203 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 180 WG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 WG + +T RE E L ++G + EIA L ++R TV NY+ S + K + R AI Sbjct: 135 WGTAENPMTERETEVLRLAADGLEAGEIAKQLRLARGTVRNYLTSAVTKLLARNRVDAIR 194 Query: 239 YA 240 A Sbjct: 195 IA 196 >gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 217 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM K K++ + YA++ + Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKSKPELVEYALKKKL 214 Query: 246 V 246 + Sbjct: 215 L 215 >gi|229155415|ref|ZP_04283525.1| Response regulator [Bacillus cereus ATCC 4342] gi|228628130|gb|EEK84847.1| Response regulator [Bacillus cereus ATCC 4342] Length = 212 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESREEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|126650450|ref|ZP_01722673.1| two-component response regulator [Bacillus sp. B14905] gi|126592606|gb|EAZ86605.1| two-component response regulator [Bacillus sp. B14905] Length = 206 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 35/72 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + KD L +E + L I+EG T+ IA+ L I + T Y+ + +R+ Sbjct: 135 KFKLQSAKDIHLNEKEKKILRLIAEGHTNKAIAIELNIPQRTTERYLTQLFSLLNVDSRT 194 Query: 235 GAIAYAVRNNIV 246 A+ A R N++ Sbjct: 195 EAVNLAERMNLL 206 >gi|82544573|ref|YP_408520.1| transcriptional regulator NarP [Shigella boydii Sb227] gi|81245984|gb|ABB66692.1| nitrate/nitrite response regulator [Shigella boydii Sb227] gi|320185869|gb|EFW60619.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC 796-83] gi|332093584|gb|EGI98642.1| response regulator [Shigella boydii 3594-74] Length = 215 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|302337733|ref|YP_003802939.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634918|gb|ADK80345.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 217 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L +I +G + EI+ IL +S TVN Y I K T + YAV+ Sbjct: 154 LSDREFEVLEYIGQGYGASEISRILNLSVKTVNTYRDHIKEKMNFDTAAAIRRYAVK 210 >gi|307730408|ref|YP_003907632.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526742|ref|YP_004228895.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|307584943|gb|ADN58341.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] gi|323383744|gb|ADX55835.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 181 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168 >gi|239942524|ref|ZP_04694461.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988988|ref|ZP_04709652.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S K + R Sbjct: 135 AADAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRH 194 Query: 235 GAIAYA 240 A+ A Sbjct: 195 TAVRLA 200 >gi|238059474|ref|ZP_04604183.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881285|gb|EEP70113.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 204 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L +EG EIA L ++ TV N++++IM KT + R A+ A Sbjct: 144 LTRREREVLREAAEGVPLKEIARRLFLAHGTVRNHLSAIMHKTGARNRMEAVRLA 198 >gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++G +IA LGIS TV N++ + + K R + YA+ Sbjct: 156 ELTPRETEVLRLVAKGLAYKQIAQRLGISHRTVQNHVQNTLTKLHLHNRVELVRYAIDRG 215 Query: 245 I 245 + Sbjct: 216 L 216 >gi|251798213|ref|YP_003012944.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545839|gb|ACT02858.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 243 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 T RE+E + I+ G ++ EI+ L IS T NYI SI+ KT + R+ Y Sbjct: 179 FTERELEIMAQIARGLSNKEISKKLFISEGTTANYITSILNKTGLEHRTQIAIY 232 >gi|204929147|ref|ZP_03220290.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321691|gb|EDZ06890.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 215 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|256786460|ref|ZP_05524891.1| LuxR family two component system response regulator [Streptomyces lividans TK24] Length = 204 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA ++ TV NY++S K + R Sbjct: 133 AADAISAGDSPLTAREAEVLEHAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRH 192 Query: 235 GAI 237 A+ Sbjct: 193 AAV 195 >gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE L I+ G T+ EIA +S TV ++ I+ KT ++ R A+ +A R Sbjct: 151 ELTPRETVILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRVHAVLFAYRTG 210 Query: 245 IV 246 +V Sbjct: 211 VV 212 >gi|119715190|ref|YP_922155.1| response regulator receiver [Nocardioides sp. JS614] gi|119535851|gb|ABL80468.1| response regulator receiver [Nocardioides sp. JS614] Length = 216 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 36/58 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT +E++ L +I+EG T+ +I + ++ TV NY++SI+ K + R+ A A + Sbjct: 155 ELTEQELKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGLERRTQAAVLASK 212 >gi|331653626|ref|ZP_08354627.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M718] gi|331048475|gb|EGI20551.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M718] Length = 225 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|328883635|emb|CCA56874.1| putative two-component system response transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E + L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 157 LTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213 >gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 205 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T+ EIA L ++ TV +++A I K +RS AI A + Sbjct: 145 LTDREIEVLRHLARGATNREIARTLFVTEATVKSHLAHIFTKLDVDSRSRAIHVAQETGL 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|324997109|ref|ZP_08118221.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 126 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LTGRE+E L ++ G T+ EIA L I+ TV ++A I K R+ Sbjct: 55 LTGRELEVLQVLAAGATNKEIAARLFIAPKTVGAHLARIFAKLGVTNRT 103 >gi|120436972|ref|YP_862658.1| two-component system response regulator [Gramella forsetii KT0803] gi|117579122|emb|CAL67591.1| two-component system response regulator [Gramella forsetii KT0803] Length = 205 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGR+ E L I +G+T+ EIA L I + TV + +++RK + + YA+ Sbjct: 144 LTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHRKNMIRKLGLQGAGELLRYALEKK 202 >gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 216 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE+E L ++ G ++ EIA L + TV ++++++ K + R + +A +N + Sbjct: 154 LTGRELEVLHLVAGGLSNSEIAGRLFVGEATVKTHVSNLLTKLDIRDRIHVVIFAYQNGV 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ V Sbjct: 156 REREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAV 213 >gi|257791860|ref|YP_003182466.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475757|gb|ACV56077.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 191 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 163 GLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 GL+ Y + +S H + F+LT RE E L + +G T EIA L +S +TV + Sbjct: 106 GLVDRYRTEEGSIESRCAHAARTFDLTRREEEVLALLLKGCTRSEIARELFVSGDTVKTH 165 Query: 221 IASIMRKTA 229 I ++ RKT Sbjct: 166 IRNLYRKTG 174 >gi|167586004|ref|ZP_02378392.1| two component transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 281 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 158 LSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 210 >gi|21954776|ref|NP_665760.1| ANL19 [Synechococcus elongatus PCC 7942] gi|81230363|ref|YP_398745.1| response regulator receiver domain-containing protein [Synechococcus elongatus PCC 7942] gi|21913198|gb|AAM81148.1|AF441790_19 ANL19 [Synechococcus elongatus PCC 7942] gi|1575686|gb|AAB38785.1| putative NarL homolog [Synechococcus elongatus PCC 7942] gi|81170335|gb|ABB58673.1| response regulator receiver domain protein (CheY-like) [Synechococcus elongatus PCC 7942] Length = 235 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 85/232 (36%), Gaps = 49/232 (21%) Query: 38 PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97 P + T+ T+ M ++EY G RW ++ D +L A D Sbjct: 16 PTEQTLRLTV-MDNISEYFGVQ-----RWGIYL---------LDTNNNLASVEAKGVSDT 60 Query: 98 YYNVLQRPTELFCPVFHTLPENITP-------PAG------MDNRYCSLTFDVARIRIGL 144 + QR + PV + EN P P G + R CS T D I G Sbjct: 61 FIEQYQRFGKAVDPVLKYVLENHAPAHEELVLPEGTWKQSELYQRCCS-THDHEHIMTGP 119 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQ------------------ANMFKSYDVHWGKDFEL 186 L +G++I IG + A+ A + K + V L Sbjct: 120 --LVGQGQLIGTINFARIGHIPAFNHLELASLGAVCTHFSARLAELRKPHSVSGQISNRL 177 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 T RE++ +++G T+ EI L I+ N+V + I RK R+ +A Sbjct: 178 TSREIQIANLVAKGLTNAEIGAELWITHNSVKQALKRIFRKLEVSARTEMVA 229 >gi|146280078|ref|YP_001170235.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC 17025] gi|145558319|gb|ABP72930.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC 17025] Length = 243 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D LT R+ E L + G ++ EIA L IS TV ++ +MRK R+ A Sbjct: 168 GLDMPLTDRQNEVLRSLGAGASNKEIARQLSISEATVKIHVRHLMRKYGVSNRTQVAILA 227 Query: 241 VRNN 244 +R Sbjct: 228 MRKT 231 >gi|312141565|ref|YP_004008901.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311890904|emb|CBH50223.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 283 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212 DRL + L A +A K + G + L+ RE E L ++ G + EIA LG+ Sbjct: 189 DRLDDAALTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERLGL 248 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +T+ +Y+ +IM K +R A+ A R ++ Sbjct: 249 RLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282 >gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 252 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G + IA LGI TV N+I S+ K + R+ A+ A + + Sbjct: 184 LTPRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGL 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 228 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE+E I+EG ++ EIA L I+ TV Y++ I+ K + R A+ A R Sbjct: 164 LTPRELEVFELIAEGLSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYR 220 >gi|229023298|ref|ZP_04179807.1| Response regulator [Bacillus cereus AH1272] gi|228738003|gb|EEL88490.1| Response regulator [Bacillus cereus AH1272] Length = 212 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|218231951|ref|YP_002366521.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|218159908|gb|ACK59900.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] Length = 229 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 124 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 177 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 178 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 222 >gi|171060765|ref|YP_001793114.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778210|gb|ACB36349.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 239 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 166 AAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 AA A +F + + + EL R +E L + G T+ EI+ G+S TV NY++S Sbjct: 162 AAPSAALFPRFPSSAMFDRVAELGARHLEILELVLSGCTNQEISNSTGLSLGTVKNYVSS 221 Query: 224 IMRKTATKTRSGAIA 238 ++ ++RS I+ Sbjct: 222 LLLALDVRSRSHLIS 236 >gi|148252434|ref|YP_001237019.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404607|gb|ABQ33113.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 36/57 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++V L +S+G + +IA LG+S T+ ++++I++K ++R+ A+ A + Sbjct: 154 LTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 210 >gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 272 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 11/104 (10%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + ++ +G L PK IL RL LAA + + LT RE+E L Sbjct: 168 IHKVAVGETLCSPKVSAILLRRL---STLAAQREP--------APTELVLTRREIEILRM 216 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + G+T+ EIA L I+ +TV +++ +++ K TR+ A A + Sbjct: 217 LEAGRTNREIAEQLCIAVHTVKSHVHNLLAKLGVSTRAQAAALS 260 >gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S VH ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ Sbjct: 151 SASVHAAYG-ELTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRT 209 Query: 235 GAIAYAVRNNIV 246 A +A +V Sbjct: 210 QAAVFAYEARLV 221 >gi|16765574|ref|NP_461189.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180821|ref|YP_217238.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613039|ref|YP_001587004.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167992577|ref|ZP_02573674.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242357|ref|ZP_02667289.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261744|ref|ZP_02683717.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466061|ref|ZP_02699931.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194449116|ref|YP_002046301.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265746|ref|ZP_03165820.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388108|ref|ZP_03214720.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238913787|ref|ZP_04657624.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420784|gb|AAL21148.1| response regulator in two-component regulatory system with NarQ (or NarX) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128454|gb|AAX66157.1| response regulator in two-component regulatory system with NarQ (or NarX) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362403|gb|ABX66171.1| hypothetical protein SPAB_00746 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407420|gb|ACF67639.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631360|gb|EDX49920.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244001|gb|EDY26621.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199605206|gb|EDZ03751.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329245|gb|EDZ16009.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338346|gb|EDZ25110.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349503|gb|EDZ36134.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247456|emb|CBG25283.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994331|gb|ACY89216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158805|emb|CBW18318.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913237|dbj|BAJ37211.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224903|gb|EFX49966.1| Nitrate/nitrite response regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715299|gb|EFZ06870.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|332989180|gb|AEF08163.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 235 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I++G ++ EIA L + T+ ++ + K + R+ A+ YA R+ + Sbjct: 174 LTPREVEVLALIAQGLSNREIARRLVVGEATIKTHVNHLFAKAGLRDRAQAVNYAYRHGL 233 Query: 246 V 246 Sbjct: 234 A 234 >gi|332715487|ref|YP_004442953.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325062172|gb|ADY65862.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 492 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L+ I +G + E++ L +S++T+ N+IAS+ K R+ A+ +A Sbjct: 426 DLTEREEQILSLICDGCSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWA 481 >gi|294631146|ref|ZP_06709706.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces sp. e14] gi|292834479|gb|EFF92828.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces sp. e14] Length = 290 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F+L+ RE E + I+ G T+ +IA IS TV N+I I K + +R+ A A Sbjct: 219 FQLSTREAEIMDLIASGMTNHQIAAACFISEKTVKNHINRIFAKLHSTSRAEAAA 273 >gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 227 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ TV ++ I+ K + R+ A +A + Sbjct: 161 DLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220 Query: 245 IV 246 +V Sbjct: 221 LV 222 >gi|241764572|ref|ZP_04762589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365975|gb|EER60596.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 237 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L I G ++ EIA +L I+ TV ++ I+RK +R A YA Sbjct: 178 LSPREEEVLREIVRGASNKEIARVLDIAETTVKIHVQHILRKLGLSSRVQAAVYA 232 >gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 233 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 170 IDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 229 Query: 244 NI 245 + Sbjct: 230 GL 231 >gi|302545152|ref|ZP_07297494.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462770|gb|EFL25863.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L SEG+ + IA L +S TV NY+ S + K + R AI A Sbjct: 141 LTPRELEVLRMASEGEEAARIAARLFLSVGTVRNYLTSAVTKLDARNRVDAIRIA 195 >gi|229160795|ref|ZP_04288786.1| Response regulator [Bacillus cereus R309803] gi|228622643|gb|EEK79478.1| Response regulator [Bacillus cereus R309803] Length = 212 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI SI+ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205 >gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 205 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L ++ G+++ EI L +S TV +++ I K K+R+ A+A A Sbjct: 145 LSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARA 199 >gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 232 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 170 DLTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHG 229 Query: 245 IV 246 + Sbjct: 230 LT 231 >gi|226195323|ref|ZP_03790912.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|254298568|ref|ZP_04966020.1| putative DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157808332|gb|EDO85502.1| putative DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|225932525|gb|EEH28523.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 275 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 155 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 207 >gi|29345566|ref|NP_809069.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253571711|ref|ZP_04849117.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298384488|ref|ZP_06994048.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|29337458|gb|AAO75263.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251838919|gb|EES67004.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298262767|gb|EFI05631.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 220 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R Sbjct: 150 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 209 Query: 243 NNIV 246 IV Sbjct: 210 AGIV 213 >gi|16761174|ref|NP_456791.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141132|ref|NP_804474.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412856|ref|YP_149931.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168229605|ref|ZP_02654663.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236420|ref|ZP_02661478.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168818030|ref|ZP_02830030.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471476|ref|ZP_03077460.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736026|ref|YP_002115321.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250575|ref|YP_002147204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361787|ref|YP_002141423.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213028722|ref|ZP_03343169.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051724|ref|ZP_03344602.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418242|ref|ZP_03351308.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426294|ref|ZP_03359044.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213622209|ref|ZP_03374992.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649802|ref|ZP_03379855.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289812587|ref|ZP_06543216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824610|ref|ZP_06544153.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298773|pir||AD0787 nitrate/nitrite response regulator protein NarP STY2472 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503473|emb|CAD07478.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhi] gi|29136758|gb|AAO68323.1| nitrate/nitrite response regulator protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127113|gb|AAV76619.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194457840|gb|EDX46679.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711528|gb|ACF90749.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093263|emb|CAR58709.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214278|gb|ACH51675.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290466|gb|EDY29821.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205335871|gb|EDZ22635.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344893|gb|EDZ31657.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|322615257|gb|EFY12179.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617847|gb|EFY14743.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624558|gb|EFY21389.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626991|gb|EFY23787.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634176|gb|EFY30912.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635631|gb|EFY32341.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640233|gb|EFY36897.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646344|gb|EFY42856.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649311|gb|EFY45747.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656431|gb|EFY52720.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661159|gb|EFY57386.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665703|gb|EFY61887.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667229|gb|EFY63396.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671234|gb|EFY67362.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675125|gb|EFY71202.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680733|gb|EFY76768.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686908|gb|EFY82885.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192673|gb|EFZ77900.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198895|gb|EFZ83994.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205094|gb|EFZ90072.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208137|gb|EFZ93081.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211120|gb|EFZ95970.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215837|gb|EGA00580.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221856|gb|EGA06256.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223671|gb|EGA07980.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231283|gb|EGA15398.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233716|gb|EGA17808.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237788|gb|EGA21848.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245769|gb|EGA29763.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246491|gb|EGA30470.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252610|gb|EGA36449.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255334|gb|EGA39107.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259569|gb|EGA43204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266066|gb|EGA49559.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272760|gb|EGA56164.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 215 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|124268678|ref|YP_001022682.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261453|gb|ABM96447.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 226 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + ++ GK+ EIA L +S NTV+ Y A I+ KT + YAVR + Sbjct: 164 LSHREYQVFGLLAAGKSVGEIAEQLVLSSNTVSTYRARILEKTGVRNDVELALYAVRQEL 223 Query: 246 V 246 + Sbjct: 224 M 224 >gi|325286907|ref|YP_004262697.1| LuxR family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322361|gb|ADY29826.1| two component transcriptional regulator, LuxR family [Cellulophaga lytica DSM 7489] Length = 209 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 30/43 (69%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +L+ RE+E L ++ GK + ++A+ LG++ T++ Y A +M+K Sbjct: 148 KLSTREIEVLKMLASGKRNKDVALGLGLNEKTISTYKARLMKK 190 >gi|291445985|ref|ZP_06585375.1| luxR family two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348932|gb|EFE75836.1| luxR family two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 200 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S K + R Sbjct: 129 AADAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRH 188 Query: 235 GAIAYA 240 A+ A Sbjct: 189 TAVRLA 194 >gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E + +++G ++ EIA L +S TV ++ I+ K + R + A + Sbjct: 157 LTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|167554141|ref|ZP_02347882.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442551|ref|YP_002041509.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198244741|ref|YP_002216317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207857666|ref|YP_002244317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194401214|gb|ACF61436.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197939257|gb|ACH76590.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321582|gb|EDZ09421.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|206709469|emb|CAR33813.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 215 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|86140782|ref|ZP_01059341.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis MED217] gi|85832724|gb|EAQ51173.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis MED217] Length = 211 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+E + T +IA + +S TV Y ++ +K K R+G + YA++NNI Sbjct: 149 LKEREIEFIKHACTEMTYKQIAEKMFLSPKTVEGYREAVFQKLGLKNRTGLVIYAIKNNI 208 >gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family [Syntrophobacter fumaroxidans MPOB] Length = 218 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG + +IA L IS TV + A++M+K + S A+A+ + Sbjct: 156 LTQREKEILKMIAEGYKNKDIADYLCISAKTVEKHRANLMKKLDLHSASSLTAFAMEKGL 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE ECL +EG T+ +IA L S T+ ++ S M K + R A+ AV + Sbjct: 191 LTKRERECLRLAAEGLTAADIARQLNRSLATITLHLTSAMHKLGARNRVQAVVRAVHYRL 250 Query: 246 V 246 + Sbjct: 251 L 251 >gi|324999632|ref|ZP_08120744.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Pseudonocardia sp. P1] Length = 200 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L G+++ +IA L ++ TV N+I++ +RK A TR A+ A Sbjct: 140 LTDRELDVLRAGRRGESTQQIARALSLAPGTVRNHISAGLRKLAVDTRQQAVLVA 194 >gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302] gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9] gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302] gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 85-1] gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 117-3] gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9] Length = 225 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|284047067|ref|YP_003397407.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951288|gb|ADB54032.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 200 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+E L + EG ++ IA ++ TV NY++S M K A TR Sbjct: 140 LTERELEVLRLVREGLSAGAIADAAHLAPGTVRNYLSSAMAKLAAPTR 187 >gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei 87.22] gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces scabiei 87.22] Length = 230 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LTGRE E L I EG T+ +I L ++ TV N+I+ ++ K + R A A + Sbjct: 164 LTGREREILALIGEGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 220 >gi|281419799|ref|ZP_06250798.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] gi|281406175|gb|EFB36855.1| transcriptional regulator, LuxR family protein [Prevotella copri DSM 18205] Length = 209 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ +++GK + EIA L I TV + I K K+ S YAV + Sbjct: 144 LSDREIEVLSLVAQGKINKEIADQLCIGLTTVITHRKKIQEKLGLKSVSSLTIYAVMHGF 203 Query: 246 V 246 V Sbjct: 204 V 204 >gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 217 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R+ E L + EGK++ EIA IL ++ TV ++ +I++ R+ A+ A + Sbjct: 153 LTPRQREVLGLLGEGKSNKEIARILELAEGTVKLHVTAILKALNVNNRTRAVVAAAQ 209 >gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ G ++ EIA L +S TV ++ +++ K + R A+ A + Sbjct: 161 LTEREMEVLRLIARGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGL 220 Query: 246 V 246 + Sbjct: 221 I 221 >gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 244 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE E L W + GK+ +I VIL IS TV ++ S K + + A+ A+ Sbjct: 180 QLSSRECEVLQWTAAGKSQIDIGVILTISSRTVEVHLRSARSKLSALSTPQAVGRAI 236 >gi|167562212|ref|ZP_02355128.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167569457|ref|ZP_02362331.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 279 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ R+ + + ++ G T+ IA LGIS TV ++ASI ++ R+ A+A Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211 >gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 231 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 168 IDLTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227 Query: 244 NIV 246 + Sbjct: 228 GLT 230 >gi|39998319|ref|NP_954270.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39985265|gb|AAR36620.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] gi|298507253|gb|ADI85976.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 229 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + + I EG TS +IA L ++ TV N+ ++MRK ++ + YA R + Sbjct: 159 LTPREQQVMRMIVEGATSRQIAESLELTLKTVENHRTNLMRKLQVHSKLELVRYAARLGL 218 Query: 246 V 246 + Sbjct: 219 I 219 >gi|74312714|ref|YP_311133.1| transcriptional regulator NarP [Shigella sonnei Ss046] gi|82776204|ref|YP_402553.1| transcriptional regulator NarP [Shigella dysenteriae Sd197] gi|157156289|ref|YP_001463544.1| transcriptional regulator NarP [Escherichia coli E24377A] gi|157161674|ref|YP_001458992.1| transcriptional regulator NarP [Escherichia coli HS] gi|170019493|ref|YP_001724447.1| transcriptional regulator NarP [Escherichia coli ATCC 8739] gi|170679777|ref|YP_001744386.1| transcriptional regulator NarP [Escherichia coli SMS-3-5] gi|187730582|ref|YP_001879462.1| transcriptional regulator NarP [Shigella boydii CDC 3083-94] gi|188495436|ref|ZP_03002706.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638] gi|191165388|ref|ZP_03027230.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A] gi|193062271|ref|ZP_03043366.1| nitrate/nitrite response regulator NarP [Escherichia coli E22] gi|194427123|ref|ZP_03059674.1| nitrate/nitrite response regulator NarP [Escherichia coli B171] gi|194436209|ref|ZP_03068311.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1] gi|209919652|ref|YP_002293736.1| transcriptional regulator NarP [Escherichia coli SE11] gi|218554761|ref|YP_002387674.1| transcriptional regulator NarP [Escherichia coli IAI1] gi|218695805|ref|YP_002403472.1| transcriptional regulator NarP [Escherichia coli 55989] gi|218700662|ref|YP_002408291.1| transcriptional regulator NarP [Escherichia coli IAI39] gi|218705722|ref|YP_002413241.1| transcriptional regulator NarP [Escherichia coli UMN026] gi|253772883|ref|YP_003035714.1| transcriptional regulator NarP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162205|ref|YP_003045313.1| transcriptional regulator NarP [Escherichia coli B str. REL606] gi|256017639|ref|ZP_05431504.1| transcriptional regulator NarP [Shigella sp. D9] gi|256022125|ref|ZP_05435990.1| transcriptional regulator NarP [Escherichia sp. 4_1_40B] gi|260844795|ref|YP_003222573.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O103:H2 str. 12009] gi|260856180|ref|YP_003230071.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O26:H11 str. 11368] gi|260868909|ref|YP_003235311.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O111:H- str. 11128] gi|297520422|ref|ZP_06938808.1| transcriptional regulator NarP [Escherichia coli OP50] gi|301024278|ref|ZP_07187969.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 196-1] gi|307138849|ref|ZP_07498205.1| transcriptional regulator NarP [Escherichia coli H736] gi|307311230|ref|ZP_07590874.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|309786632|ref|ZP_07681253.1| response regulator [Shigella dysenteriae 1617] gi|312973555|ref|ZP_07787727.1| response regulator [Escherichia coli 1827-70] gi|331663697|ref|ZP_08364607.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA143] gi|331668898|ref|ZP_08369746.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA271] gi|331683869|ref|ZP_08384465.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H299] gi|73856191|gb|AAZ88898.1| nitrate/nitrite response regulator [Shigella sonnei Ss046] gi|81240352|gb|ABB61062.1| nitrate/nitrite response regulator [Shigella dysenteriae Sd197] gi|157067354|gb|ABV06609.1| nitrate/nitrite response regulator NarP [Escherichia coli HS] gi|157078319|gb|ABV18027.1| nitrate/nitrite response regulator NarP [Escherichia coli E24377A] gi|169754421|gb|ACA77120.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|170517495|gb|ACB15673.1| nitrate/nitrite response regulator NarP [Escherichia coli SMS-3-5] gi|187427574|gb|ACD06848.1| nitrate/nitrite response regulator NarP [Shigella boydii CDC 3083-94] gi|188490635|gb|EDU65738.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638] gi|190904551|gb|EDV64258.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A] gi|192931937|gb|EDV84536.1| nitrate/nitrite response regulator NarP [Escherichia coli E22] gi|194414744|gb|EDX31015.1| nitrate/nitrite response regulator NarP [Escherichia coli B171] gi|194424937|gb|EDX40922.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1] gi|209912911|dbj|BAG77985.1| nitrate/nitrite response regulator [Escherichia coli SE11] gi|218352537|emb|CAU98316.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli 55989] gi|218361529|emb|CAQ99120.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli IAI1] gi|218370648|emb|CAR18457.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli IAI39] gi|218432819|emb|CAR13713.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli UMN026] gi|242377829|emb|CAQ32596.1| narP [Escherichia coli BL21(DE3)] gi|253323927|gb|ACT28529.1| two component transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974106|gb|ACT39777.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli B str. REL606] gi|253978273|gb|ACT43943.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BL21(DE3)] gi|257754829|dbj|BAI26331.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O26:H11 str. 11368] gi|257759942|dbj|BAI31439.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O103:H2 str. 12009] gi|257765265|dbj|BAI36760.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O111:H- str. 11128] gi|284922185|emb|CBG35267.1| nitrate/nitrite response regulator protein [Escherichia coli 042] gi|299880482|gb|EFI88693.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 196-1] gi|306908736|gb|EFN39233.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|308925541|gb|EFP71027.1| response regulator [Shigella dysenteriae 1617] gi|309702505|emb|CBJ01831.1| nitrate/nitrite response regulator protein [Escherichia coli ETEC H10407] gi|310332150|gb|EFP99385.1| response regulator [Escherichia coli 1827-70] gi|315061500|gb|ADT75827.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli W] gi|315615453|gb|EFU96085.1| response regulator [Escherichia coli 3431] gi|320177206|gb|EFW52214.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae CDC 74-1112] gi|320199790|gb|EFW74379.1| Nitrate/nitrite response regulator protein [Escherichia coli EC4100B] gi|323152251|gb|EFZ38541.1| response regulator [Escherichia coli EPECa14] gi|323161744|gb|EFZ47626.1| response regulator [Escherichia coli E128010] gi|323168652|gb|EFZ54332.1| response regulator [Shigella sonnei 53G] gi|323171865|gb|EFZ57509.1| response regulator [Escherichia coli LT-68] gi|323184184|gb|EFZ69561.1| response regulator [Escherichia coli 1357] gi|323377920|gb|ADX50188.1| two component transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323936807|gb|EGB33092.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323940739|gb|EGB36927.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323945009|gb|EGB41074.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323961585|gb|EGB57192.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323972986|gb|EGB68182.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323977610|gb|EGB72696.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324117918|gb|EGC11817.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331059496|gb|EGI31473.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA143] gi|331064092|gb|EGI36003.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA271] gi|331078821|gb|EGI50023.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H299] gi|332343973|gb|AEE57307.1| response regulator protein [Escherichia coli UMNK88] Length = 215 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6] Length = 215 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505] Length = 240 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 9/122 (7%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184 D R L + + G ++ P+ + R+ E+ G L + +A S D Sbjct: 125 DTRPTELAEAIRTVASGEAVVSPR----ITQRMLEMFAGSLPSSEAPAQSSSDPRIDS-- 178 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +S+G ++ EIA L +S TV ++ +++ K + R A+ A Sbjct: 179 -LTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETG 237 Query: 245 IV 246 ++ Sbjct: 238 LM 239 >gi|259418825|ref|ZP_05742742.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] gi|259345047|gb|EEW56901.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] Length = 151 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE + L+ ++EGK + IA LG+S +TV +I ++ K R+ A + + Sbjct: 83 NIRLTTREAQVLSCVAEGKQNKLIANRLGLSEHTVKLHIHHVIAKLGVNNRTEAAVWFLE 142 Query: 243 NN 244 N+ Sbjct: 143 NH 144 >gi|257789944|ref|YP_003180550.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257473841|gb|ACV54161.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 493 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A Q + ++ H + + T RE E L + +G+T+ I+ L +S NTV +I SI Sbjct: 406 AEQQGDALEARCAHVAETYGFTPRESEILVHLGQGRTARAISEKLVVSENTVKYHIKSIY 465 Query: 226 RKTATKTR 233 +K +R Sbjct: 466 QKLDVHSR 473 >gi|256392635|ref|YP_003114199.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358861|gb|ACU72358.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 227 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+GRE + L IS G T +IA LGIS +TV+ Y+ I K ++ Sbjct: 154 LSGREAQVLRHISLGLTHGQIATRLGISPHTVDTYVKRIRSKLGAGNKA 202 >gi|218515607|ref|ZP_03512447.1| transcriptional activator protein [Rhizobium etli 8C-3] Length = 94 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++CL + G + +I L IS + V Y+AS RK T S A+A A Sbjct: 34 LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 88 >gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 T RE E L W S GKT E A+ILGI TV ++++I++K AI Sbjct: 176 FTERENEILYWASVGKTYPETAMILGIKTCTVKFHMSNIVKKLGVANARHAI 227 >gi|148239259|ref|YP_001224646.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847798|emb|CAK23349.1| Two component system response regulator [Synechococcus sp. WH 7803] Length = 235 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE+E ++ G ++ IA +LG+S TV +++ + M K + R+ Sbjct: 170 ELTPRELEVAAGVARGLKNNAIATLLGLSVETVKSHVGNAMDKLGARDRT 219 >gi|327313696|ref|YP_004329133.1| LuxR family transcriptional regulator [Prevotella denticola F0289] gi|326945245|gb|AEA21130.1| transcriptional regulator, LuxR family [Prevotella denticola F0289] Length = 209 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L+ I +G + EIA L IS TV + +IM K ++ S YAV Sbjct: 144 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 199 >gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] Length = 225 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|302529365|ref|ZP_07281707.1| response regulatory protein [Streptomyces sp. AA4] gi|302438260|gb|EFL10076.1| response regulatory protein [Streptomyces sp. AA4] Length = 211 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L +++G + EIA L IS TV ++ I K TR+GA+A A Sbjct: 150 LTDRERDILEQLAQGLGNREIARRLFISEATVKTHLGRIYEKLGVDTRAGAVAVA 204 >gi|229172478|ref|ZP_04300037.1| Response regulator [Bacillus cereus MM3] gi|228610949|gb|EEK68212.1| Response regulator [Bacillus cereus MM3] Length = 212 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEDECKIDTSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|170767404|ref|ZP_02901857.1| nitrate/nitrite response regulator NarP [Escherichia albertii TW07627] gi|170123738|gb|EDS92669.1| nitrate/nitrite response regulator NarP [Escherichia albertii TW07627] Length = 215 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|161502599|ref|YP_001569710.1| transcriptional regulator NarP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863946|gb|ABX20569.1| hypothetical protein SARI_00645 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 214 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|86158187|ref|YP_464972.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774698|gb|ABC81535.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 210 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E ++ ++ EIA L +S TV+ Y I+ K A ++ + + YAVR+ + Sbjct: 149 LSPRELEIFLQLAAARSVSEIAERLQLSVKTVSTYRGRILEKMALRSNAELMQYAVRHGL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|56477577|ref|YP_159166.1| putative two-component response regulator [Aromatoleum aromaticum EbN1] gi|56313620|emb|CAI08265.1| putative two-component response regulator [Aromatoleum aromaticum EbN1] Length = 208 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT + + +++GK++ EIA +LG+S TV ++++I R +R+ A+ R+ Sbjct: 145 FGLTAGQTRVMELLAQGKSNREIADLLGLSEGTVKVHMSAIFRALHVSSRAQALIVIARH 204 Query: 244 N 244 Sbjct: 205 G 205 >gi|163939641|ref|YP_001644525.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861838|gb|ABY42897.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 119 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 172 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 173 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 217 >gi|295840223|ref|ZP_06827156.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295827842|gb|EFG65645.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 206 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+ L +EG++ IA L ++ TV NY+A+ +RKT + R AI A Sbjct: 146 LSDRELRVLGLAAEGESVAAIAGHLHLAAGTVRNYLAAAIRKTGARNRLDAIRLA 200 >gi|262401518|ref|ZP_06078085.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262352233|gb|EEZ01362.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 214 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ +IA L IS TV +++ I +K K R AIA+ +N Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212 >gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 205 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L ++ G+++ EI L +S TV +++ I K K+R+ A+A A Sbjct: 145 LSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARA 199 >gi|254473974|ref|ZP_05087367.1| two-component system regulatory protein [Pseudovibrio sp. JE062] gi|211956863|gb|EEA92070.1| two-component system regulatory protein [Pseudovibrio sp. JE062] Length = 268 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%) Query: 180 WGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +G DF LT R+ LT++ EGK + +IA LGIS TV +++++++ +RS Sbjct: 150 FGIDFYEGLANLTRRQATILTYLKEGKLNKQIAHELGISEATVKHHVSALLSTLGFYSRS 209 Query: 235 GAIA 238 +A Sbjct: 210 QLVA 213 >gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L ++ G + EIA L I+ TV ++ I K TR+ A+ AV + Sbjct: 144 LSAREVEILELLASGAGNREIARRLFITEATVKTHLVHIYGKLGVDTRTAAVTAAVERRL 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 39/67 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V + ELT E++ + +++G + EIA L +S+ T+ +++++++ KT R+ Sbjct: 155 VQVQGNVELTPTELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELS 214 Query: 238 AYAVRNN 244 +A+ +N Sbjct: 215 QWAIESN 221 >gi|15598909|ref|NP_252403.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107103228|ref|ZP_01367146.1| hypothetical protein PaerPA_01004297 [Pseudomonas aeruginosa PACS2] gi|116051711|ref|YP_789450.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890010|ref|YP_002438874.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236624|ref|ZP_04929947.1| hypothetical protein PACG_02627 [Pseudomonas aeruginosa C3719] gi|254242406|ref|ZP_04935728.1| hypothetical protein PA2G_03153 [Pseudomonas aeruginosa 2192] gi|313109120|ref|ZP_07795091.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9949879|gb|AAG07101.1|AE004790_6 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115586932|gb|ABJ12947.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168555|gb|EAZ54066.1| hypothetical protein PACG_02627 [Pseudomonas aeruginosa C3719] gi|126195784|gb|EAZ59847.1| hypothetical protein PA2G_03153 [Pseudomonas aeruginosa 2192] gi|218770233|emb|CAW25995.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310881593|gb|EFQ40187.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 213 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 170 ANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A++ + + GK +LT REVE L G EIA+ L S+ T++ +S M Sbjct: 133 AHLLEVGEAEHGKPLASLEQLTPREVEVLRLYGSGLAVGEIAIRLCRSKQTISAQKSSAM 192 Query: 226 RKTATKTRSGAIAYAVRNNI 245 RK + +G Y N + Sbjct: 193 RKLGLDSNAGLFIYIRENGL 212 >gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272] gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227] Length = 215 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|330888196|gb|EGH20857.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 87 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G + TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|325860035|ref|ZP_08173162.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS 18C-A] gi|325482561|gb|EGC85567.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS 18C-A] Length = 203 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L+ I +G + EIA L IS TV + +IM K ++ S YAV Sbjct: 138 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 193 >gi|323529279|ref|YP_004231431.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386281|gb|ADX58371.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 216 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] Length = 416 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE + L +S+GK++ IA LGI+ +TV ++ ++ K R+ A + Sbjct: 184 QLTRREKQVLRLVSQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAAAHF 238 >gi|218297320|ref|ZP_03497945.1| transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218242357|gb|EED08900.1| transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 179 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 144 LMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 LM L P+G + R ++ GL Q F + G D LT RE + L ++ G Sbjct: 70 LMDLQPEGILATSARPEDVLEGLREVAQGRGFHKIPM-LGPD-SLTARERQVLRLVALGL 127 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +IA +LG+SR TV N+++++ K + R Sbjct: 128 CNADIARMLGVSRRTVYNWVSALQEKLGLENR 159 >gi|89899702|ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344439|gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 217 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT R+ E L I+EG+++ EIA L ++ TV ++ + +M++ +G + YA+ Sbjct: 152 QLTPRQREVLQLIAEGQSTKEIARRLDLAVKTVESHRSQLMKQLDIHEVAGLVRYAMHVG 211 Query: 245 IV 246 +V Sbjct: 212 VV 213 >gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T] gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301] gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401] gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 2457T] gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 301] gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401] gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017] gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T] gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70] gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671] gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71] gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71] gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218] gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304] Length = 215 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|260063731|ref|YP_003196811.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea biformata HTCC2501] gi|88783176|gb|EAR14349.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea biformata HTCC2501] Length = 226 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 29/43 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +L+ REVE L ++ GK + E+A+ L ++ TV+ Y A +M+K Sbjct: 165 KLSTREVEVLKMLASGKRNKEVALGLNLNEKTVSTYKARLMKK 207 >gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 195 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++ G +++EIA L +S +TV +++ +M K + R+ + A + Sbjct: 128 ELTPREREVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDRAQLVVAAYESG 187 Query: 245 IV 246 +V Sbjct: 188 VV 189 >gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326] gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 210 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A Y A+ S DV ELT RE++ L +++G + +IA L IS +TV ++ S+ Sbjct: 131 VAKYLADRENSSDVFD----ELTDREMQILREVAKGDRNKQIADTLFISESTVKVHMKSL 186 Query: 225 MRKTATKTRSGA 236 ++K +R+ A Sbjct: 187 LKKLQVPSRTAA 198 >gi|307565420|ref|ZP_07627909.1| hemerythrin HHE cation binding domain protein [Prevotella amnii CRIS 21A-A] gi|307345870|gb|EFN91218.1| hemerythrin HHE cation binding domain protein [Prevotella amnii CRIS 21A-A] Length = 318 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G + EIA L IS NTV + +I RK + +G YA+ NN+ Sbjct: 251 LSDREKEVIIALVQGMANKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 224 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE E L I+ G ++ EIA L I+ TV ++ I+RK +R A YA Sbjct: 162 QLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYA 217 >gi|326317305|ref|YP_004234977.1| LuxR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374141|gb|ADX46410.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 264 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D L+ RE EC+ +EG S +IA L + +T+ ++ S RK + R+ IA A Sbjct: 190 RDVALSDREHECVLLAAEGMPSKQIAARLNRAESTIVFHLQSAARKLGGRNRAQMIARAA 249 >gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 222 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ +IA L +S TV N++ + +RK R YA+ + Sbjct: 162 LTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 12/89 (13%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 GR++L +R ++ + H LT E L ++EG T+ +IA L Sbjct: 122 GRVLLDER------------SLTRRRAAHEDPTSALTPSERRVLELVAEGLTNRDIAERL 169 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239 G++ TV N++ S++ K + R+ A+A+ Sbjct: 170 GVAEKTVKNHVTSMLSKMGLQRRTQAVAW 198 >gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 213 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT E+ L I +G T EIA L IS TV N+++ I++K + K A+ A Sbjct: 153 LTKTEISILKLIDQGYTQKEIANHLVISIQTVKNHVSRILKKLSAKNSKHAVCKA 207 >gi|194434215|ref|ZP_03066482.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012] gi|194417544|gb|EDX33646.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012] gi|320178834|gb|EFW53797.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC 9905] gi|332093180|gb|EGI98240.1| response regulator [Shigella boydii 5216-82] gi|332096195|gb|EGJ01198.1| response regulator [Shigella dysenteriae 155-74] Length = 215 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|86740943|ref|YP_481343.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3] gi|86567805|gb|ABD11614.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. CcI3] Length = 914 Score = 38.1 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++ L + G ++ EIA LG++ NTV Y+ SI K R +++ A R I Sbjct: 853 LNAREIDILRLLDRGLSNKEIARNLGLTINTVKWYLKSIYTKLGVARRGESVSEARRRRI 912 Query: 246 V 246 + Sbjct: 913 L 913 >gi|26248576|ref|NP_754616.1| transcriptional regulator NarP [Escherichia coli CFT073] gi|91211483|ref|YP_541469.1| transcriptional regulator NarP [Escherichia coli UTI89] gi|117624388|ref|YP_853301.1| transcriptional regulator NarP [Escherichia coli APEC O1] gi|227887250|ref|ZP_04005055.1| transcriptional regulator NarP [Escherichia coli 83972] gi|237704666|ref|ZP_04535147.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA] gi|300981378|ref|ZP_07175493.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 200-1] gi|300982960|ref|ZP_07176392.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 45-1] gi|301048933|ref|ZP_07195926.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 185-1] gi|331647847|ref|ZP_08348939.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M605] gi|26108981|gb|AAN81184.1|AE016763_143 Nitrate/nitrite response regulator protein narP [Escherichia coli CFT073] gi|91073057|gb|ABE07938.1| nitrate/nitrite response regulator protein NarP [Escherichia coli UTI89] gi|115513512|gb|ABJ01587.1| nitrate/nitrite response regulator protein NarP [Escherichia coli APEC O1] gi|222033954|emb|CAP76695.1| Nitrate/nitrite response regulator protein narP [Escherichia coli LF82] gi|226901032|gb|EEH87291.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA] gi|227835600|gb|EEJ46066.1| transcriptional regulator NarP [Escherichia coli 83972] gi|300299309|gb|EFJ55694.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 185-1] gi|300307590|gb|EFJ62110.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 200-1] gi|300408653|gb|EFJ92191.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 45-1] gi|315285806|gb|EFU45246.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 110-3] gi|315298006|gb|EFU57275.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 16-3] gi|324013986|gb|EGB83205.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 60-1] gi|331043571|gb|EGI15709.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M605] Length = 225 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|89068113|ref|ZP_01155530.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] gi|89046352|gb|EAR52409.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] Length = 228 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E LT++++G +A +L IS +T+ YI S K + A+A A + Sbjct: 148 LSPREIEALTYLAQGYGRGRVADVLSISEHTLRAYIESARFKLGAANTTHAVARAAMEGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614] gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614] Length = 218 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE+E I++G ++ EI L IS TV ++ + +K + R+ AI A + I Sbjct: 153 LTGRELEVFRLITQGLSNAEIGRELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTGI 212 >gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 250 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E LT I+ G + EIA + G+S +TV +I ++ K A ++S A+ A R Sbjct: 186 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATR 242 >gi|301053374|ref|YP_003791585.1| LuxR family response regulator [Bacillus anthracis CI] gi|300375543|gb|ADK04447.1| response regulator, LuxR family [Bacillus cereus biovar anthracis str. CI] Length = 212 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDTSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|317129068|ref|YP_004095350.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474016|gb|ADU30619.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 28/184 (15%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 + DLFQ Q +DS+ + +V C AL+ Q + L PV Sbjct: 65 ISSDLFQYQ-IDSLKQENSQILIVSCNALTR--------QSLSFLSLPV----------- 104 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM---FKSYDVHW 180 N SL++ + L LF KG + + E+ + N FK ++ Sbjct: 105 ----NALLSLSYLEKNTNVVLRSLFTKGVFLEPNLHTELVTEIERKTNRSKPFKKLCLNI 160 Query: 181 GKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 K + T +E E L I +G + EIA L + +TV+ I+SI++K R+ A+ Sbjct: 161 SKVASIFTKKEQEILQLILDGCNNGEIADKLFYANSTVSTNISSILKKMEANDRTEAMVK 220 Query: 240 AVRN 243 A+RN Sbjct: 221 AIRN 224 >gi|282855558|ref|ZP_06264874.1| transcriptional regulator, LuxR family protein [Pyramidobacter piscolens W5455] gi|282586593|gb|EFB91845.1| transcriptional regulator, LuxR family protein [Pyramidobacter piscolens W5455] Length = 220 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Query: 163 GLLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 G + YQ M + D G T RE++ L + E K+ +EI +L +S +++ Sbjct: 133 GTASGYQIYPNEEMLRQIDPFAGV---FTRREIKLLCMLCESKSREEIGAVLALSPSSIK 189 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++SI+ KT S I+Y + + + Sbjct: 190 GCVSSILNKTGYGNISQLISYMISHGCL 217 >gi|302553857|ref|ZP_07306199.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471475|gb|EFL34568.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 325 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F+L+ RE E + I+ G + +IA IS TV N+I I K + +R A+A Sbjct: 252 FQLSTREAEIMDLIASGMNNQQIAATCFISEKTVKNHINRIFAKLHSTSRGEAVA 306 >gi|228938954|ref|ZP_04101554.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971836|ref|ZP_04132457.1| Response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978444|ref|ZP_04138821.1| Response regulator [Bacillus thuringiensis Bt407] gi|228781461|gb|EEM29662.1| Response regulator [Bacillus thuringiensis Bt407] gi|228787926|gb|EEM35884.1| Response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820803|gb|EEM66828.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939456|gb|AEA15352.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 212 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTELEHRTQIAIY 205 >gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2] gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2] Length = 592 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQMALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|126736492|ref|ZP_01752233.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] gi|126714030|gb|EBA10900.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] Length = 254 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 26/36 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ E L W+ +GKT+ +IA++LG++ TV ++ Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLLGLTPATVEKHL 221 >gi|145594124|ref|YP_001158421.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303461|gb|ABP54043.1| response regulator receiver [Salinispora tropica CNB-440] Length = 212 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L +++EG T+ EIA + ++ TV NY++S++ K + R+ A A R Sbjct: 150 LTDQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATR 206 >gi|324006555|gb|EGB75774.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 57-2] Length = 223 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|302535507|ref|ZP_07287849.1| two-component system response regulator [Streptomyces sp. C] gi|302444402|gb|EFL16218.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 157 LTDQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213 >gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 224 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LTGRE E + +++G ++ EIA L +S TV ++ I+ K + R + A Sbjct: 156 KLTGREREVMMLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|302528815|ref|ZP_07281157.1| two component transcriptional regulator [Streptomyces sp. AA4] gi|302437710|gb|EFL09526.1| two component transcriptional regulator [Streptomyces sp. AA4] Length = 201 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE + L+ +G T +IA L +S TV N+++S + KT +TR+ A+ Sbjct: 141 LTARERDVLSAAKDGSTVADIAKSLFLSDGTVRNHLSSAIGKTGARTRAEAV 192 >gi|229102432|ref|ZP_04233140.1| Response regulator [Bacillus cereus Rock3-28] gi|228681079|gb|EEL35248.1| Response regulator [Bacillus cereus Rock3-28] Length = 212 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDTSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|194291803|ref|YP_002007710.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424] gi|193225707|emb|CAQ71653.1| putative Response regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 220 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L ++ G+++ IA +G+S NTV ++A+I+ +R AI A R + Sbjct: 156 LTPRQLEVLHQLTLGRSNKVIAYHMGLSENTVRVHVAAILDHLGVVSRVEAILEAQRRGL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 221 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D ELT RE E L I+EG+++ EI L IS TV ++++++ K + R+ A R Sbjct: 155 DEELTEREKEVLLLIAEGRSNKEIGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHR 214 Query: 243 NN 244 Sbjct: 215 KG 216 >gi|110642402|ref|YP_670132.1| transcriptional regulator NarP [Escherichia coli 536] gi|191170199|ref|ZP_03031753.1| nitrate/nitrite response regulator NarP [Escherichia coli F11] gi|215487411|ref|YP_002329842.1| transcriptional regulator NarP [Escherichia coli O127:H6 str. E2348/69] gi|218559110|ref|YP_002392023.1| transcriptional regulator NarP [Escherichia coli S88] gi|218690355|ref|YP_002398567.1| transcriptional regulator NarP [Escherichia coli ED1a] gi|306814694|ref|ZP_07448856.1| transcriptional regulator NarP [Escherichia coli NC101] gi|312967493|ref|ZP_07781708.1| response regulator [Escherichia coli 2362-75] gi|331658272|ref|ZP_08359234.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA206] gi|110343994|gb|ABG70231.1| nitrate/nitrite response regulator protein NarP [Escherichia coli 536] gi|190909715|gb|EDV69300.1| nitrate/nitrite response regulator NarP [Escherichia coli F11] gi|215265483|emb|CAS09885.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O127:H6 str. E2348/69] gi|218365879|emb|CAR03621.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli S88] gi|218427919|emb|CAR08839.2| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli ED1a] gi|281179284|dbj|BAI55614.1| nitrate/nitrite response regulator [Escherichia coli SE15] gi|294492603|gb|ADE91359.1| DNA-binding response regulator, LuxR family [Escherichia coli IHE3034] gi|305852088|gb|EFM52540.1| transcriptional regulator NarP [Escherichia coli NC101] gi|307554259|gb|ADN47034.1| nitrate/nitrite response regulator protein NarP [Escherichia coli ABU 83972] gi|307626269|gb|ADN70573.1| transcriptional regulator NarP [Escherichia coli UM146] gi|312287690|gb|EFR15595.1| response regulator [Escherichia coli 2362-75] gi|312946814|gb|ADR27641.1| transcriptional regulator NarP [Escherichia coli O83:H1 str. NRG 857C] gi|320196066|gb|EFW70690.1| Nitrate/nitrite response regulator protein [Escherichia coli WV_060327] gi|323188081|gb|EFZ73376.1| response regulator [Escherichia coli RN587/1] gi|323951986|gb|EGB47860.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323955960|gb|EGB51713.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|330912024|gb|EGH40534.1| nitrate/nitrite response regulator protein [Escherichia coli AA86] gi|331056520|gb|EGI28529.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA206] Length = 215 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E + +++G ++ EIA L +S TV ++ ++ K + R + A I Sbjct: 137 LTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGI 196 Query: 246 V 246 V Sbjct: 197 V 197 >gi|302387360|ref|YP_003823182.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] gi|302197988|gb|ADL05559.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] Length = 222 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT E + + + +G ++ EIA L +S TV NY+++I+ K + R+ +AV+ N Sbjct: 156 ELTRTEWKIIAQVEKGASNKEIAKNLNLSEGTVRNYLSTILNKLDLRDRTQLAIWAVQTN 215 Query: 245 I 245 + Sbjct: 216 V 216 >gi|302530152|ref|ZP_07282494.1| two component transcriptional regulator [Streptomyces sp. AA4] gi|302439047|gb|EFL10863.1| two component transcriptional regulator [Streptomyces sp. AA4] Length = 197 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+ REV+ L ++EG + EIA L S TV N I + + + R A+AYA Sbjct: 132 GDRTNLSPREVDVLRLMAEGWDTAEIANKLCYSERTVKNVIYGMTNRLKLRNRPHAVAYA 191 Query: 241 VRNNIV 246 +R ++ Sbjct: 192 LRAGVI 197 >gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 201 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D LT RE+E L G T+ EI L ++ TV NY++S ++K ++R AI A Sbjct: 137 EDNPLTAREMEILRMAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIA 195 >gi|153005603|ref|YP_001379928.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029176|gb|ABS26944.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 215 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L + G T ++A LGI+ TV Y+ I K T++ A AV + Sbjct: 153 LSKRELEVLQLLVHGHTYADVAQALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|86136672|ref|ZP_01055251.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. MED193] gi|85827546|gb|EAQ47742.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. MED193] Length = 214 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE L +++GK++ ++A L IS TV + +I RK + +G YA+ + + Sbjct: 147 LTGREQTILLELAQGKSNKDVAHSLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|317489864|ref|ZP_07948357.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325829952|ref|ZP_08163410.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|316911019|gb|EFV32635.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325488119|gb|EGC90556.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 191 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 163 GLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 GL+ Y + +S H + F+LT RE E L + +G T EIA L +S +TV + Sbjct: 106 GLVDRYRTEEGSIESRCAHAARTFDLTRREEEVLALLLKGCTRSEIARELFVSGDTVKTH 165 Query: 221 IASIMRKTA 229 I ++ RKT Sbjct: 166 IRNLYRKTG 174 >gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE E L ++ G T+ EIA L +S +TV ++ ++ K + R A+ A Sbjct: 158 LTGREREILLAVARGWTNGEIAARLVLSESTVKTHVGRVLAKIGARDRVQAVILA 212 >gi|311067079|ref|YP_003972002.1| response regulator [Bacillus atrophaeus 1942] gi|310867596|gb|ADP31071.1| response regulator [Bacillus atrophaeus 1942] Length = 159 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 30/63 (47%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S TV NY + + K R AI A Sbjct: 97 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTVRNYCSKLYSKLDVNNREEAIKMARTE 156 Query: 244 NIV 246 NIV Sbjct: 157 NIV 159 >gi|308049915|ref|YP_003913481.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632105|gb|ADN76407.1| two component transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 216 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F++ D+ K ELT ++ L +EG + +IA LG+S T+ + +I RK + Sbjct: 140 FEANDI-GAKLAELTPQQYRVLQMFAEGMLNKQIAYDLGVSEATIKAHATAIFRKLGVRN 198 Query: 233 RSGAI 237 R+ A+ Sbjct: 199 RTQAV 203 >gi|239831042|ref|ZP_04679371.1| Monoamine regulon transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823309|gb|EEQ94877.1| Monoamine regulon transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 241 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE+E + I GK++ IA LG+S TV ++ +IM+K R+ Sbjct: 176 LTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRT 224 >gi|258653570|ref|YP_003202726.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556795|gb|ACV79737.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 221 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 165 LAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LAA F + D F +LT RE E L I+ G+T+ +IA L +S TV N +++ Sbjct: 136 LAARVTRAFAAPDNPRAAAFPQLTDREREVLDLIAAGRTNAQIAAELFLSGKTVRNNVST 195 Query: 224 IMRKTATKTRSGAIAYA 240 I+ K R+ I A Sbjct: 196 ILSKLQAGDRANVIIRA 212 >gi|73541245|ref|YP_295765.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] gi|72118658|gb|AAZ60921.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] Length = 395 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K F+LT E +++G T DE AV LGIS+NT ++ +I KT TR + + Sbjct: 329 KLFDLTPAETALALVLADGLTLDEAAVELGISKNTARAHLRAIFSKTGV-TRQATLVRTL 387 Query: 242 RNNIV 246 +++V Sbjct: 388 LSSVV 392 >gi|16130130|ref|NP_416697.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. MG1655] gi|89109009|ref|AP_002789.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. W3110] gi|170081813|ref|YP_001731133.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. DH10B] gi|238901367|ref|YP_002927163.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BW2952] gi|400374|sp|P31802|NARP_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narP gi|304917|gb|AAA24200.1| nitrate/nitrite response regulator [Escherichia coli] gi|1788521|gb|AAC75253.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. MG1655] gi|85675300|dbj|BAE76656.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K12 substr. W3110] gi|169889648|gb|ACB03355.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. DH10B] gi|238860866|gb|ACR62864.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BW2952] gi|260448714|gb|ACX39136.1| two component transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136825|dbj|BAJ43984.1| transcriptional regulator NarP [Escherichia coli DH1] Length = 215 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|330987825|gb|EGH85928.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 126 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE+ CL ++ G+T EIA G+S +V I S M K R +A A R + Sbjct: 17 LAERELSCLLAVAAGQTDKEIAKHDGLSPRSVKGRIESCMHKLGVYKRPALVAEAFRRGL 76 Query: 246 V 246 + Sbjct: 77 I 77 >gi|331001406|ref|ZP_08325026.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] gi|329568288|gb|EGG50099.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] Length = 220 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LTGRE++ + I++G + EIA LGI+ TV + +SI RK +T Sbjct: 140 LTGRELDIVRLITKGLNNKEIAEELGIAEKTVKVHRSSIYRKLQVRT 186 >gi|297159127|gb|ADI08839.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G + EIA +S+ TV NY++S K + R Sbjct: 135 AADAISAGDSPLTAREAELLELAADGASIAEIAQRAALSQGTVRNYLSSAASKIPAENRH 194 Query: 235 GA 236 A Sbjct: 195 AA 196 >gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 218 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE + L I+ G ++ EIA L IS TV N++ +I+ + + R+ A A Sbjct: 154 ELTPREKQVLRLIANGASNREIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAILA 209 >gi|84516508|ref|ZP_01003867.1| two-component response regulator [Loktanella vestfoldensis SKA53] gi|84509544|gb|EAQ06002.1| two-component response regulator [Loktanella vestfoldensis SKA53] Length = 130 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE+E L ISEG + + A +G+ +TV++Y ++ RK ++S A+ A + Sbjct: 64 DEKLTKREIELLERISEGLSYAKCANEMGLQLSTVHSYSRALFRKLGINSKSQAVLEAQK 123 Query: 243 NNI 245 I Sbjct: 124 FGI 126 >gi|119714227|ref|YP_919369.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119526136|gb|ABL79506.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 574 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E L+ + EG ++ EIA L IS T +++++I+ K ++R+ A AYA+ Sbjct: 504 LSRREQEVLSLVVEGLSNAEIAERLFISVKTAGHHVSNILTKLGVRSRTEATAYAL 559 >gi|323130577|gb|ADX18007.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 238 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 177 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 227 >gi|257094984|ref|YP_003168625.1| two component LuxR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047508|gb|ACV36696.1| two component transcriptional regulator, LuxR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 205 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 25/47 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE E L I GK + IA LGIS TV + A IM K+ + Sbjct: 143 LTARETEVLDGIVSGKRNKVIAADLGISERTVETHRARIMEKSGANS 189 >gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] Length = 224 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM K K++ + YA++ + Sbjct: 156 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELVEYAMKKKL 215 Query: 246 V 246 + Sbjct: 216 L 216 >gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 244 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ + + Sbjct: 183 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFAKTGTASRTELVRYALEHGL 242 Query: 246 V 246 V Sbjct: 243 V 243 >gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 1019 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ + ++ G ++ EIA L ++ NT+ ++ +I K A +R+ AIA A R N+ Sbjct: 956 LSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRLNL 1015 Query: 246 V 246 + Sbjct: 1016 I 1016 >gi|188532994|ref|YP_001906791.1| Transcriptional regulatory protein, LuxR [Erwinia tasmaniensis Et1/99] gi|188028036|emb|CAO95893.1| Transcriptional regulatory protein, LuxR [Erwinia tasmaniensis Et1/99] Length = 242 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 178 VHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + +GK +L T RE + + + + ++ EIA L IS NTV NY+ SI K + Sbjct: 156 ISFGKPTDLFTDREFDVVFFALQSLSAKEIAKKLSISHNTVENYLHSIYDKIGVSALNQL 215 Query: 237 IAYAVRN 243 I Y +N Sbjct: 216 IEYCRKN 222 >gi|121594320|ref|YP_986216.1| LuxR family transcriptional regulator [Acidovorax sp. JS42] gi|222110954|ref|YP_002553218.1| LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|120606400|gb|ABM42140.1| transcriptional regulator, LuxR family [Acidovorax sp. JS42] gi|221730398|gb|ACM33218.1| transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 181 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 25/48 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + +G TS EI L IS TV Y A +MRK T Sbjct: 123 ELTAREREVAARLLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170 >gi|148252117|ref|YP_001236702.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404290|gb|ABQ32796.1| putative Transcriptional regulatory protein, luxR family [Bradyrhizobium sp. BTAi1] Length = 206 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 179 HWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H G+ + LT RE E L IS G ++ E A+ +GIS T ++ A MRK + + + Sbjct: 138 HPGRTNKSLTPREREVLELISAGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELV 197 Query: 238 AYAVRNNI 245 A+ N I Sbjct: 198 RAALLNQI 205 >gi|284029989|ref|YP_003379920.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809282|gb|ADB31121.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 902 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E ++EG T+ +IA L +S T N++ I+ K TRS A++ R+ Sbjct: 828 LSPREAEVAALVAEGLTNRQIAERLVLSERTAQNHVQHILTKLGFTTRSQIAAWSARS 885 >gi|257062833|ref|YP_003142505.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790486|gb|ACV21156.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 320 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + K L+ RE E L I GK + IA + +S NTV ++ +I++KT + R I Sbjct: 257 YAKRNNLSKRETEVLALIVMGKDNQNIASEMTLSLNTVKVHVHNILKKTGQQNRQALI 314 >gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273] gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273] Length = 592 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + AI A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAILKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|300777043|ref|ZP_07086901.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300502553|gb|EFK33693.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 229 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L I + + EIA +L IS TV + S++ KT K +G + YA+ + I Sbjct: 159 ISKREKEVLELICKQYNTAEIADLLFISSRTVEGHRNSLLLKTGAKNTAGLVVYAIESKI 218 >gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 222 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ +IA L +S TV N++ + +RK R YA+ + Sbjct: 162 LTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|86742704|ref|YP_483104.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86569566|gb|ABD13375.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 300 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 181 GKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 GK+ L+ RE + L ++ G T+ E+A L +SR TV Y+ S MRK TR A+ Sbjct: 232 GKNSKVRLSTRETDVLAQVALGCTNAEVANRLSLSRETVKAYLQSAMRKLDAGTRYEAVV 291 Query: 239 YA 240 A Sbjct: 292 RA 293 >gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR Length = 211 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++ G T+ +IA GISRNTV ++ ++ K R+ A+A V N Sbjct: 148 LTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVALHVSIN 206 >gi|326799555|ref|YP_004317374.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326550319|gb|ADZ78704.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 218 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 158 RLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 +W G Y NM F++ + W +L RE+E L EIA + +S T Sbjct: 120 EIWMKGYYNNYLTNMGFQASNTDW---MDLRDRELEFLRLACSDLNYHEIADCMCLSIKT 176 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ Y A + K K+R G + A+++N++ Sbjct: 177 IDGYRACLFAKFGVKSRVGLVLEALKHNLI 206 >gi|295108610|emb|CBL22563.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus obeum A2-162] Length = 206 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G D+ G RE E + I++G ++ EIA L +S TV NY++SI+ K + R+ Sbjct: 140 GFDYAAHGINEREKEIIRLIADGNSNKEIAAELYLSEGTVRNYLSSILNKLQLRDRT 196 >gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family [cyanobacterium UCYN-A] Length = 233 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 169 IDLTPREKSVLDLVAEGLMNKEIAARLNTSVRNVEKYVSRLFGKTETNSRTELVRFALKH 228 Query: 244 NI 245 + Sbjct: 229 GL 230 >gi|282881294|ref|ZP_06289978.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS 5C-B1] gi|281304839|gb|EFA96915.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS 5C-B1] Length = 221 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I +G + EIA L I TV + +IM K K+ S YAV + Sbjct: 156 LSDREIEVLSLIVQGYINKEIADRLNIGMTTVITHRKNIMEKLGVKSVSALTIYAVTHGY 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|261209952|ref|ZP_05924252.1| transcriptional regulator LuxR family [Vibrio sp. RC341] gi|260841017|gb|EEX67549.1| transcriptional regulator LuxR family [Vibrio sp. RC341] Length = 214 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ +IA L IS TV +++ I +K K R AIA+ +N Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212 >gi|290958464|ref|YP_003489646.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647990|emb|CBG71096.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 213 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G T RE E L + +EG + EIA L + +TV NY+++++ K+ + R AI A Sbjct: 148 GSASPFTRREAEILRFAAEGAPAQEIAGRLRLELSTVRNYLSTVVAKSGARNRVDAIRIA 207 Query: 241 V 241 + Sbjct: 208 M 208 >gi|229031002|ref|ZP_04187018.1| Response regulator [Bacillus cereus AH1271] gi|228730349|gb|EEL81313.1| Response regulator [Bacillus cereus AH1271] Length = 566 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K R AI A Sbjct: 504 YGLTKREMEVLEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKMARTE 563 Query: 244 NIV 246 NI+ Sbjct: 564 NIL 566 >gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 218 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA L +S TV N++ + RK R YA+ + + Sbjct: 157 LTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216 >gi|87201101|ref|YP_498358.1| LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87136782|gb|ABD27524.1| transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 416 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 11/78 (14%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 +ILRD +GL + +F L+ E +++G +++E A+ LG+ Sbjct: 320 VILRDPARRLGLASPDLEQLFG-----------LSPAEARLAQLLADGLSTEEAALQLGV 368 Query: 213 SRNTVNNYIASIMRKTAT 230 SRNTV + + ++ KT T Sbjct: 369 SRNTVRSQLQAVFAKTGT 386 >gi|405947|gb|AAA16411.1| narP [Escherichia coli] Length = 225 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I EG+++ +IA L I+ TV ++ +I+ K R+ A A+R + Sbjct: 168 LTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCADDRTQAAVTALRAGL 227 Query: 246 V 246 V Sbjct: 228 V 228 >gi|262164568|ref|ZP_06032306.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] gi|262026948|gb|EEY45615.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] Length = 310 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D +LT RE E L + GK IA ++GIS TV Y A + K ++ I A Sbjct: 224 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 283 Query: 241 V 241 + Sbjct: 284 L 284 >gi|229185568|ref|ZP_04312748.1| Response regulator [Bacillus cereus BGSC 6E1] gi|228597963|gb|EEK55603.1| Response regulator [Bacillus cereus BGSC 6E1] Length = 566 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K R AI A Sbjct: 504 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 563 Query: 244 NIV 246 NI+ Sbjct: 564 NIL 566 >gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 221 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +S H K+ + LT RE E + + EG ++DEIA L +S T +++ M K + Sbjct: 142 RSRQPHASKELDVLTEREREIVALVGEGLSNDEIAARLVLSPATAKTHVSRAMVKLGVRD 201 Query: 233 RSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 202 RAQLVVVAYQTGLV 215 >gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 210 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L +++G ++ EIA L IS TV ++ I K + R+ A A+R+ Sbjct: 149 QLTPRESQILRQVTKGLSNKEIADRLQISERTVKAHLQHIFDKLGVQDRTSAAVLAIRHG 208 >gi|182437656|ref|YP_001825375.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778292|ref|ZP_08237557.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466172|dbj|BAG20692.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658625|gb|EGE43471.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 206 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S K + R Sbjct: 135 AADAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAATKIGAENRH 194 Query: 235 GAIAYA 240 A+ A Sbjct: 195 TAVRLA 200 >gi|182412651|ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839865|gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 219 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R E + I+EG+++ EIA +L +S T+ + +M + +G + YA+R + Sbjct: 155 LTPRMREIVQLIAEGRSTKEIAFLLNLSVKTIETHRMHLMARLGLHDVAGVVRYALRTGL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|154496530|ref|ZP_02035226.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC 29799] gi|150274163|gb|EDN01254.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC 29799] Length = 817 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 139 RIRIGLMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 R + ++ L P G+ I + + EI A ++ +F + + + +LT RE E Sbjct: 710 RKYLSILFLLPSMKKKHGKAIQKIKALEIHYTKAEESRIFFMLEKYPEQMGQLTEREREV 769 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++ G + EIA L IS TV ++I SI KT RS Sbjct: 770 AQLVAAGLRNREIAEKLFISEETVKSHIRSIFNKTNIDRRS 810 >gi|91794445|ref|YP_564096.1| regulatory protein, LuxR [Shewanella denitrificans OS217] gi|91716447|gb|ABE56373.1| transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 222 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +S G + EIA L IS +TV +++S+ RKT ++ R Sbjct: 157 LTNRERTIIQLVSSGARNKEIAHRLCISEHTVKAHLSSVFRKTQSRNR 204 >gi|94309404|ref|YP_582614.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353256|gb|ABF07345.1| putative two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 207 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 30/42 (71%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE+ + +++ G ++ I+V+LGIS TV+++ ASIM K Sbjct: 146 LSRRELTVMRFLAAGHSNKAISVVLGISNKTVSSHKASIMTK 187 >gi|301328679|ref|ZP_07221739.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 78-1] gi|300844929|gb|EFK72689.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 78-1] Length = 216 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|288917724|ref|ZP_06412087.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350939|gb|EFC85153.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 250 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT REVE L +++G ++ + A LG+S TV N++ +++ K + R +A+R Sbjct: 187 LTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLAKLQLRNRVELTRFALREG 245 >gi|255525021|ref|ZP_05391967.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296187376|ref|ZP_06855771.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511277|gb|EET87571.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296047898|gb|EFG87337.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 220 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ ++EGK++ +I +L +S TV NY+ I K +R+ Sbjct: 160 LTKREMDVAKLVAEGKSNKDICKVLFLSEGTVKNYVTKIFEKLQLNSRT 208 >gi|239942603|ref|ZP_04694540.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989062|ref|ZP_04709726.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446065|ref|ZP_06585455.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349012|gb|EFE75916.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E + L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 157 LTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213 >gi|257054193|ref|YP_003132025.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584065|gb|ACU95198.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 214 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE L I +G ++ EIA L ++ TV NY+ S++ K + R+ A A+ R+ Sbjct: 151 KLSERERSVLELIGQGLSNREIAERLFLAEKTVKNYVTSLLSKLGMRRRTQAAAWVARH 209 >gi|256827483|ref|YP_003151442.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583626|gb|ACU94760.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 215 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E + ++EG + E+A L +S TV N+I++I+ K K R+ Sbjct: 154 LTDREYEVVEAVAEGLDNAEVAQTLYMSEGTVRNHISTILAKLGLKNRT 202 >gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676] gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676] Length = 592 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|255036046|ref|YP_003086667.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254948802|gb|ACT93502.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 214 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT REV+ LT ++ ++ EIA L +S TV Y SI+RK A K + + +A Sbjct: 152 YNLTKREVDILTEVAREFSTAEIADKLCLSEYTVETYRKSIIRKLAAKNIASLVNFA 208 >gi|163755392|ref|ZP_02162512.1| putative transcriptional regulator [Kordia algicida OT-1] gi|161324812|gb|EDP96141.1| putative transcriptional regulator [Kordia algicida OT-1] Length = 252 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 176 YDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 YD+ G + +LT RE E L + + G T +EIA + +S +TV + + K Sbjct: 177 YDLEGGFWKTQEKIKLTSREKEILQYSTRGYTINEIAKTIFVSPDTVKFHRRKLFDKLEV 236 Query: 231 KTRSGAIAYAVRNNIV 246 S AIAYA N ++ Sbjct: 237 ANISEAIAYATNNKLI 252 >gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385] gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216 Query: 245 I 245 I Sbjct: 217 I 217 >gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 153 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ++ +T RE+E LT ++ G ++ EIA L +S NTV + A K R+ A+ Sbjct: 88 QELGITAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAV 143 >gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579] gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264] gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579] gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264] Length = 595 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591 Query: 244 NIV 246 I+ Sbjct: 592 GII 594 >gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 595 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591 Query: 244 NIV 246 I+ Sbjct: 592 GII 594 >gi|315647520|ref|ZP_07900622.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276959|gb|EFU40300.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 216 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--- 237 + + LT RE++ ++E K + EIA +L I+ TV NYI+ I K R+ AI Sbjct: 149 AQHYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAIPLL 208 Query: 238 AYAVRN 243 +A+R+ Sbjct: 209 KHALRD 214 >gi|307329449|ref|ZP_07608610.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884858|gb|EFN15883.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 191 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 126 LTEQERRILLLIGEGLTNRAIGERLHLAEKTIKNYVSSLLAKLGMERRSQAAAYVAR 182 >gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 248 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G LT RE E L ++ G ++ +IA L IS +TV N++A++ K ++ ++ Sbjct: 179 GGGGAVLTEREREILDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSKLEVLSI 238 Query: 240 AVRNNIV 246 AVR+ +V Sbjct: 239 AVRDGLV 245 >gi|239918649|ref|YP_002958207.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415136|ref|ZP_06246878.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839856|gb|ACS31653.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 222 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E +T +++G ++ EIA L ++ TV +++ IM K + R + A R Sbjct: 157 ELTPRELEVVTELAKGSSNAEIAQALFLAEATVKSHLGKIMDKWQARDRVQVLIRASRAG 216 Query: 245 IV 246 +V Sbjct: 217 LV 218 >gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 209 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE+E L I +GK++ EIA L I TV ++++I+ K + R+ A Y Sbjct: 148 QLTPRELEVLKLIGQGKSNQEIADELIIGIKTVKTHVSNILAKLNVEDRTQAAIY 202 >gi|153007612|ref|YP_001368827.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559500|gb|ABS12998.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 241 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE+E + I GK++ IA LG+S TV ++ +IM+K R+ Sbjct: 176 LTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRT 224 >gi|91783961|ref|YP_559167.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687915|gb|ABE31115.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 216 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|154243760|ref|YP_001409333.1| autoinducer-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162882|gb|ABS70097.1| Autoinducer-binding domain protein [Xanthobacter autotrophicus Py2] Length = 233 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +L ++ CL W +EGKT +IA I G+S TVN ++ + + + + A A A + Sbjct: 170 EIDLKAKQALCLKWSAEGKTMKDIASIEGMSFATVNFHLNNARKALDAGSLAQATALATK 229 Query: 243 NNIV 246 ++ Sbjct: 230 LKLI 233 >gi|323176891|gb|EFZ62481.1| response regulator [Escherichia coli 1180] Length = 204 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 143 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 193 >gi|300788286|ref|YP_003768577.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797800|gb|ADJ48175.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 195 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 KD T RE E + ++EG ++ EIA + +++ TV +++ ++ K + R+ A+A A Sbjct: 121 KDDPFTPREREVVECLAEGMSNTEIAARMSMAQRTVKYHVSHVLAKLGARDRAHAVALA 179 >gi|282864856|ref|ZP_06273910.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560281|gb|EFB65829.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 282 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 155 LRDRLWEI-GLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGI 212 LRD L + G LA+ + + G F L REV+ L ++ G T+ A LG+ Sbjct: 193 LRDELLSVCGRLASAAGSERPA-----GAGFVRLAPREVDVLACVASGATNAVAAERLGL 247 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV Y+ S MRK TR A+ A R ++ Sbjct: 248 RPETVKAYLRSSMRKLGAHTRLEAVVAARRAGLL 281 >gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] Length = 198 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+GRE+E L + G ++ EIA L IS+ TV ++ I K R+ A+ A Sbjct: 135 DEALSGREIELLKALQTGMSNREIAEALFISQATVKTHLIHIYAKLGVDNRTAAVDKARE 194 Query: 243 NNIV 246 I+ Sbjct: 195 RRII 198 >gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15] gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15] Length = 592 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 550 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 10/89 (11%) Query: 165 LAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRN 215 LAA A M S H G D +LT RE++ L + +G ++ EI+ L IS + Sbjct: 457 LAAIGAMMI-SGKSHGGNDGTVNIDMLSEQLTAREMDVLELLIQGCSNREISERLFISVH 515 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244 TV N+I +I +K RS IA + N Sbjct: 516 TVKNHITNIFQKIGVNDRSQLIALVYQLN 544 >gi|120609353|ref|YP_969031.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587817|gb|ABM31257.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 256 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+ RE + L I+ G ++ EIA L I+ TV ++ I+RK +R A YA Sbjct: 191 GSASPLSAREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAVYA 250 >gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 265 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + L+ R+ E + W SEG T+DEIA L +S +T + ++ ++ + A+A A+ Sbjct: 200 SNVHLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEAL 259 Query: 242 RNNIV 246 R ++ Sbjct: 260 RLGLI 264 >gi|49481089|ref|YP_035969.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228914414|ref|ZP_04078027.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|49332645|gb|AAT63291.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228845231|gb|EEM90269.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 212 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDSSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 595 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591 Query: 244 NIV 246 I+ Sbjct: 592 GII 594 >gi|325677216|ref|ZP_08156882.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325551913|gb|EGD21609.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 283 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212 DRL + L A +A K + G + L+ RE E L ++ G + EIA LG+ Sbjct: 189 DRLDDASLTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERLGL 248 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +T+ +Y+ +IM K +R A+ A R ++ Sbjct: 249 RLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282 >gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 208 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E LT I+ G T+ EIA L +S +TV + +++ RK + R+ A+ A R Sbjct: 147 LSEREQEVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQR 203 >gi|254786770|ref|YP_003074199.1| positive regulator AgmR [Teredinibacter turnerae T7901] gi|237687202|gb|ACR14466.1| positive regulator AgmR [Teredinibacter turnerae T7901] Length = 212 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT ++ L +++EG ++ EIA+ LG+S +T Y++ ++ + R+ A+ A R Sbjct: 142 IDLTTQQRATLRYLAEGLSNKEIAIQLGVSPSTAKEYVSKVIERLDATNRTQAVLAAQRE 201 Query: 244 NIV 246 ++ Sbjct: 202 GLL 204 >gi|332207531|ref|XP_003252850.1| PREDICTED: hypothetical protein LOC100581292 [Nomascus leucogenys] Length = 115 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 +E FCP+ LP+ PP G D CSL F R+ + Sbjct: 55 SEAFCPLAAALPKTTGPPGGRDKPTCSLVFRERRVPV 91 >gi|330809042|ref|YP_004353504.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377150|gb|AEA68500.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 223 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 KG I+L L + LLA ++ + +YD LT RE + L I G ++ +I Sbjct: 122 KGAIVLDSTL--VALLADQDESVSRPAYDPDLPDTGNLTEREGQTLALIGAGMSNKQIGR 179 Query: 209 ILGISRNTVNNYIASIMRKTATKTR 233 LGIS TV Y+ ++++K + +R Sbjct: 180 ELGISDGTVKIYVRNLLQKFSLHSR 204 >gi|326330414|ref|ZP_08196722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951689|gb|EGD43721.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE E L + G + IA L I+ +TV +++ I+RK R+ AIA A Sbjct: 321 ELTARESEVLQLMVAGAPNRVIAERLVIAEDTVKSHVKQILRKLGVANRAQAIARAA 377 >gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 89 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+E L W SEGKT EI+ I S+ TV ++ +I K R A+ AVR + Sbjct: 29 LTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNRVQAMNEAVRQGL 88 >gi|296387778|ref|ZP_06877253.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 229 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 170 ANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A++ + + GK +LT REVE L G EIA+ L S+ T++ +S M Sbjct: 149 AHLLEVGEAEHGKPLASLEQLTPREVEVLRLYGSGLAVGEIAIRLCRSKQTISAQKSSAM 208 Query: 226 RKTATKTRSGAIAYAVRNNI 245 RK + +G Y N + Sbjct: 209 RKLGLDSNAGLFIYIRENGL 228 >gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 210 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A Sbjct: 149 ELTERELDVLQEVARGMSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAA 200 >gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas subvibrioides ATCC 15264] Length = 208 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L ++ G T+ EIA LGI TV ++ ++ K R+ A +A R Sbjct: 149 LTPREREVLESVARGLTNKEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAAVFAAR 205 >gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 207 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++ G T+ +IA GISRNTV ++ ++ K R+ A+A V N Sbjct: 144 LTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVALHVSVN 202 >gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] Length = 214 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 148 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 206 Query: 245 I 245 I Sbjct: 207 I 207 >gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171] gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171] Length = 592 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 205 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE+E L ++ GK++ E+A L IS TV ++ I +K TR+ A+ A Sbjct: 142 EVALSSRELEILEALATGKSNKELAQRLFISEATVKTHLIHIYQKLGVDTRTAAVTVARE 201 Query: 243 NNIV 246 ++ Sbjct: 202 RKLI 205 >gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 210 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 REV L ++ G ++ EIA L ++ TV NY+++I+ K + R+ A+ A+ Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGIRDRTRAVLKAI 205 >gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++EG ++ EIA L +S TV ++ I+ K + R A+ A + Sbjct: 160 LTPREVEVLREVAEGLSNGEIADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|313499425|gb|ADR60791.1| Putative metal dependent phosphohydrolase [Pseudomonas putida BIRD-1] Length = 479 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 30/55 (54%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 K LT RE L IS G ++ E+A L IS +TV ++ SI RK TR+ A Sbjct: 414 KSTLLTTRECSILMEISRGASNKEVARRLEISPSTVRTHMESIFRKLGCSTRAAA 468 >gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis] Length = 217 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYA 240 +L+ RE L I +G T+ EIA L IS +TV Y++ I+RK A + ++ +AYA Sbjct: 151 QLSDREQAVLGLIGQGLTNAEIAGRLFISDSTVKEYVSVILRKLGVANRVQAAVLAYA 208 >gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] Length = 202 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----NMFKSYDVHW 180 G+D R LT AR + ++ +L+D E L +QA N+F +++ Sbjct: 69 GVDARIIILTVSDARSDVYALVDAGADGYLLKDSEPETLLAQIHQAAEGHNVFSEAVLNY 128 Query: 181 -GKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 G E LT RE++ L ++ G ++ +IA L IS TV +I +++RK ++ Sbjct: 129 LGTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRS 188 Query: 233 RSGA 236 R A Sbjct: 189 RVAA 192 >gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 215 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LTGRE E + + G ++DEIA L IS T +++ +M K A + R+ Sbjct: 154 LTGREREVMGLVGMGLSNDEIAAHLVISPATARTHVSRVMIKLAARDRA 202 >gi|271966006|ref|YP_003340202.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509181|gb|ACZ87459.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 201 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G EIA +G+S TV NY+AS + K + R AI A Sbjct: 141 LTERESEVLRLTASGAEPPEIAARIGLSYGTVRNYLASSVTKLNARNRVDAIRIA 195 >gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586] gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA ++S + V +LT RE + + + G ++ EIA L Sbjct: 125 ILQDEMWLARKLAQEYILHYRSGNSVVTSQMYAKLTKREQQIIKLLGSGSSNIEIADKLF 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|257792657|ref|YP_003183263.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257476554|gb|ACV56874.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 462 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE E L + GK++ +A L +S+NTV ++IA + +K TR Sbjct: 403 YGLTAREEEVLGQLLHGKSASAVAADLFLSKNTVRSHIAHLYQKMDVHTR 452 >gi|257792428|ref|YP_003183034.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257476325|gb|ACV56645.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 535 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + LT RE E L ++EG++S IA L +S NTV +Y+ +I +K ++ I + Sbjct: 476 YGLTNREAEVLMLLAEGRSSSYIAGELVLSDNTVRSYVKNIYQKLDVHSKQDVIDF 531 >gi|239813946|ref|YP_002942856.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239800523|gb|ACS17590.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 247 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E LT I+ G + EIA + G+S +TV +I ++ K A ++S A+ A R Sbjct: 183 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATR 239 >gi|210050464|dbj|BAG80716.1| transcriptional regulator [Rhodococcus sp. YK2] gi|210050474|dbj|BAG80725.1| transcriptional regulator [Terrabacter sp. YK3] Length = 402 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 37/70 (52%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q + + V + L+ RE E L ++ G+T+ IA L ++ TV +++ I+RK Sbjct: 329 QLDTYPRQAVRFAPASSLSTRESEVLRLMAAGETNSAIAARLFVTDETVKSHVKQILRKL 388 Query: 229 ATKTRSGAIA 238 + R+ A+A Sbjct: 389 HARNRAEAVA 398 >gi|91784434|ref|YP_559640.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688388|gb|ABE31588.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 181 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 27/47 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 122 IELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168 >gi|85859003|ref|YP_461205.1| sensory domain-containing/LuxR family regulatory protein [Syntrophus aciditrophicus SB] gi|85722094|gb|ABC77037.1| sensory domain linked to a LuxR family regulatory protein [Syntrophus aciditrophicus SB] Length = 939 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E++ + + EGKTS EIA +L + ++ + +I +K + G++A +R+ Sbjct: 880 LTKKEIQVASLVREGKTSKEIAELLNSKKRVIDFHRENIRKKLGLNNKKGSLAILLRS 937 >gi|329897100|ref|ZP_08271846.1| regulatory protein, LuxR [gamma proteobacterium IMCC3088] gi|328921442|gb|EGG28830.1| regulatory protein, LuxR [gamma proteobacterium IMCC3088] Length = 341 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F LT +E + ++ G T ++ ++ G+S+NT +++ S RK +S +++ +R Sbjct: 278 FSLTKQEARLVIALANGGTLEDFSLETGVSKNTARSHLYSSFRKVGVTQQSALVSHVIR 336 >gi|302521642|ref|ZP_07273984.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430537|gb|EFL02353.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 249 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 WG L+ RE E + I+ G + +IA I+ TV N+I I K T TRS AIA Sbjct: 178 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 234 >gi|294506039|ref|YP_003570097.1| RNA polymerase sigma factor [Salinibacter ruber M8] gi|294342367|emb|CBH23145.1| RNA polymerase sigma factor [Salinibacter ruber M8] Length = 194 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMR 226 QA+ + D W ELTGR+ E L EG + +E A ++GIS TVNN+I ++ Sbjct: 117 QADADQLEDRLWQWIGELTGRQREALVLTRFEGLSHEEAADVMGISPRTVNNHIVRALK 175 >gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LAA+ F + D +LT RE E L ++ G IA LGIS TV ++ Sbjct: 133 LAAFVLQAFSAPAEEQADDELDQLTPREREVLHHLARGYAYKRIAARLGISPRTVETHVG 192 Query: 223 SIMRKTATKTR 233 S++RK +R Sbjct: 193 SVLRKLQLSSR 203 >gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] Length = 202 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180 G+D R LT AR + ++ +L+D EI L AA N+F + + Sbjct: 69 GIDARIIVLTVSDARSDVYAVIDAGADGYLLKDSEPEILLENIRQAAAGENVFSNEVAQY 128 Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 129 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 188 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 189 RVAATIMYIEN 199 >gi|205353364|ref|YP_002227165.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273145|emb|CAR38106.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628455|gb|EGE34798.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 207 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 146 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 196 >gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 38/62 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT E++ + +++G + EIA L +S+ T+ +++++++ KT R+ +A+ Sbjct: 160 NVELTPTELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIE 219 Query: 243 NN 244 +N Sbjct: 220 SN 221 >gi|154687453|ref|YP_001422614.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353304|gb|ABS75383.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 215 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + + T RE+ ++ I++G ++ EI+ L IS T NYI+SI+ KT + R+ Sbjct: 144 AHQIDESQFTERELSIMSLIAKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIA 203 Query: 238 AYAVRNNI 245 Y + + Sbjct: 204 IYYITGKV 211 >gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216 Query: 245 I 245 I Sbjct: 217 I 217 >gi|114561805|ref|YP_749318.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333098|gb|ABI70480.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 209 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ L ++EGK++ IA L IS TV ++ +++RK K+R+ Sbjct: 152 LTPRELQILQELAEGKSNRMIAEDLHISEGTVKVHVKNLLRKANAKSRT 200 >gi|53804396|ref|YP_113723.1| LuxR family transcriptional regulator [Methylococcus capsulatus str. Bath] gi|53758157|gb|AAU92448.1| transcriptional regulator, LuxR family [Methylococcus capsulatus str. Bath] Length = 255 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT E L+ + G + EIA LG++ NTV+ Y I RK K R+G +A Sbjct: 198 LTPAERRLLSALLGGASEAEIAERLGLTPNTVHTYATRIYRKFGVKGRTGLVA 250 >gi|302339955|ref|YP_003805161.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637140|gb|ADK82567.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 379 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE++ I +G TS EIA I+ +S TV NY SI +K Sbjct: 315 LTSRELQIAGLIRDGYTSKEIASIMHMSSRTVENYRQSIRKK 356 >gi|299536275|ref|ZP_07049588.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728261|gb|EFI68823.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 243 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 E+T RE E L ++ +G + EIA L +S NT+ ++ ++ RK R+ +A ++ Sbjct: 180 LEMTDREREVLKFVFKGLKNIEIAKQLFVSENTIKKHLQNLYRKFQVTNRTQLLAKCLK 238 >gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 592 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 217 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ RE++ L +++G+++ EIA L ++ TV N++ +++ K + R+ A Sbjct: 157 LSDRELDVLRLLADGRSNREIATALFLAEGTVKNHVTNVLGKLGARDRTQA 207 >gi|37223196|gb|AAQ90192.1| LuxR [Vibrio cholerae] Length = 214 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 20/30 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISR 214 +LT RE ECL W EGKTS +I ILG S Sbjct: 184 DLTKREKECLAWPCEGKTSWDIPKILGCSE 213 >gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10] gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216 Query: 245 I 245 I Sbjct: 217 I 217 >gi|315605340|ref|ZP_07880383.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312909|gb|EFU60983.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 232 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L + G T +IA L +S+ TV N+++S M K +TR+ A + A Sbjct: 172 LTARETDVLREVEGGGTIADIAHALTLSQGTVRNHVSSAMLKMDARTRAEAASLA 226 >gi|306820840|ref|ZP_07454463.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551112|gb|EFM39080.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 221 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IS G + I+ L IS TV N+++SI++K + R+ YA++N I+ Sbjct: 166 VMKEISSGLNNKSISKKLNISEKTVKNHVSSILKKLELQDRTQVAIYAIKNKII 219 >gi|296123119|ref|YP_003630897.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296015459|gb|ADG68698.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 284 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGR++E L ++ G + EIA ++ +S+ +V+++ IM K R +A+R + Sbjct: 222 LTGRQLEVLRHLANGASVKEIARLMHLSQKSVDSHKYRIMHKLGIHDRVELARFAIREGL 281 >gi|320009809|gb|ADW04659.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E + L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 163 LTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 219 >gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 220 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +LT RE+E L I +G ++ EIA L IS TV N+++SI+ + R+ Sbjct: 152 DLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSSLNLRDRT 201 >gi|118478620|ref|YP_895771.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043062|ref|ZP_03110301.1| response regulator [Bacillus cereus 03BB108] gi|118417845|gb|ABK86264.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196026546|gb|EDX65214.1| response regulator [Bacillus cereus 03BB108] Length = 597 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K R AI A Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 594 Query: 244 NIV 246 NI+ Sbjct: 595 NIL 597 >gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 254 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 163 GLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 GL A QA ++ + +G+D LT RE + L I G + IA LG+S NTV Sbjct: 160 GLAAQKQASSEDIDLERKIDFGQDL-LTMRETQVLDLICVGMQNKIIADRLGLSENTVKV 218 Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244 ++ +I +K + R+ A A R++ Sbjct: 219 HVRNIYKKMNVRNRTEAAARYFRSD 243 >gi|254694986|ref|ZP_05156814.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 245 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVPNIMKKIGAANRT 228 >gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] Length = 595 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|254392649|ref|ZP_05007824.1| hypothetical protein SSCG_05260 [Streptomyces clavuligerus ATCC 27064] gi|197706311|gb|EDY52123.1| hypothetical protein SSCG_05260 [Streptomyces clavuligerus ATCC 27064] Length = 261 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 25/39 (64%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 RE + L IS+G T +IA LGISR+TV+ Y+ I K Sbjct: 187 RESQVLGQISQGLTHGQIATRLGISRHTVDTYVKRIRTK 225 >gi|223936673|ref|ZP_03628583.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894524|gb|EEF60975.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 198 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ GK EIA L +S T++ Y I+ K K + + YA+++ + Sbjct: 137 LSDREFQVLRLIASGKIVSEIAKELSLSVKTISTYRTRILEKMGMKNNAELMHYAIQHQL 196 Query: 246 V 246 V Sbjct: 197 V 197 >gi|149915179|ref|ZP_01903707.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b] gi|149810900|gb|EDM70739.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D LT RE++ L ++EGK + EIA L I TV ++ ++ RK + R+ A Sbjct: 138 DVALTPRELDVLKGLTEGKANKEIARELDIQEVTVKLHVKTLSRKLQARNRTHA 191 >gi|187920980|ref|YP_001890012.1| two component LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719418|gb|ACD20641.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 216 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|70734192|ref|YP_257832.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68348491|gb|AAY96097.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 256 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243 +L+ R+++ + +G+T+ +IA LGI+ NTV Y++ ++R T R+ A+A + N Sbjct: 187 QLSPRQLDVARLVGKGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALALSPSN 246 Query: 244 N 244 + Sbjct: 247 S 247 >gi|21229549|ref|NP_635466.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766422|ref|YP_241184.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188989475|ref|YP_001901485.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21111017|gb|AAM39390.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571754|gb|AAY47164.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167731235|emb|CAP49409.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 65 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L ++EG EIA LG+S NTV N++A++ K +R AI +A Sbjct: 2 LGLLAEGLADKEIAQQLGVSPNTVRNHVAALYSKIDVHSRGEAIVWA 48 >gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] Length = 202 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 34/70 (48%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + +S D LT RE + L + +GK++ EIA L I TV ++ ++ RK Sbjct: 127 DFLESGDTEAEGKVHLTPRETDVLVGVLDGKSNKEIARDLDIQEVTVKLHLKTLSRKLGA 186 Query: 231 KTRSGAIAYA 240 K R+ A A Sbjct: 187 KNRTQAAMIA 196 >gi|119386879|ref|YP_917934.1| DeoR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377474|gb|ABL72238.1| transcriptional regulator, DeoR family [Paracoccus denitrificans PD1222] Length = 310 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Query: 188 GREVECLT---WIS--EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 GR++E W+S GKT DEIA I+GISR T +A M + K R Sbjct: 5 GRKLEQAAKAAWLSYVAGKTQDEIAGIMGISRQTAQRLVAQAMAEGIVKIR 55 >gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 213 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++GK++ E+ L IS +TV +I +++RK R+ A+ A + + Sbjct: 153 LTDREHEVLKLLADGKSNAEVGRALFISESTVKFHIRNVIRKLGVTKRTDAVYVASKRGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 550 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 10/89 (11%) Query: 165 LAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRN 215 LAA A M S H G D +LT RE++ L + +G ++ EI+ L IS + Sbjct: 457 LAAIGAMMI-SGKSHGGNDGTVNIDMLSEQLTAREMDVLELLIQGCSNREISERLFISVH 515 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244 TV N+I +I +K RS IA + N Sbjct: 516 TVKNHITNIFQKIGVNDRSQLIALVYQLN 544 >gi|256393536|ref|YP_003115100.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359762|gb|ACU73259.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 208 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REV+ + +SEG + EIA L S T+ + +M + + R+ +A+A R Sbjct: 145 LSSREVDVIRLVSEGMETKEIAAKLCYSERTIKGVLHDVMTRLELRNRAHVVAHAAREG 203 >gi|169829784|ref|YP_001699942.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168994272|gb|ACA41812.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 200 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 35/72 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + KD L +E + L I+EG T+ IA+ L I + T Y+ + +R+ Sbjct: 129 KFKLQNAKDIHLNEKEKKILRLIAEGHTNKAIAIELNIPQRTTERYLTQLFSLLNVDSRT 188 Query: 235 GAIAYAVRNNIV 246 A+ A R N++ Sbjct: 189 EAVNLAERMNLL 200 >gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842] gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842] Length = 595 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591 Query: 244 NIV 246 I+ Sbjct: 592 GII 594 >gi|149925364|ref|ZP_01913628.1| two-component response regulator [Limnobacter sp. MED105] gi|149825481|gb|EDM84689.1| two-component response regulator [Limnobacter sp. MED105] Length = 231 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 148 FPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 +P+ L++ L E G+L AN + S G D LT ++VE + +EG Sbjct: 121 YPELLRALQNLLIEAGVLDEVPKGVEKAANEYHSNIYAPGSDKPLTWKQVEIMRKTAEGL 180 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ++ E+A + IS +TV +I I + K + A+ +R Sbjct: 181 SAKEVAREMDISPDTVRGHIKEIFLRLGAKNKGQAVDIFIR 221 >gi|144899494|emb|CAM76358.1| regulatory protein, LuxR [Magnetospirillum gryphiswaldense MSR-1] Length = 253 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F L+ RE E L ++EG +IA +L + TV +I S RK T + A+A A+ Sbjct: 189 FPLSPREQEILLRLTEGLRPQQIAFLLSLHEGTVEKHIESARRKLKAATVTQAVATAL 246 >gi|51209895|ref|YP_063559.1| tctD transcriptional regulator [Gracilaria tenuistipitata var. liui] gi|50657649|gb|AAT79634.1| tctD transcriptional regulator [Gracilaria tenuistipitata var. liui] Length = 214 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE L +S+G T+ EIA L +S + Y++ ++ KT T+ R+ Sbjct: 149 LTSREYSILVLVSKGCTNKEIANTLNLSTRNIEKYVSRLLSKTKTRNRT 197 >gi|222109015|ref|YP_002551281.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] gi|13405830|gb|AAD31606.2| TraR' [Agrobacterium radiobacter K84] gi|221727937|gb|ACM30987.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] Length = 234 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ GKT +EIA + G+ N+V + M++ ++++ A A+R + Sbjct: 174 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 194 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG+S +TV +++A + K R+ A++ A Sbjct: 133 LTPRESEVLPLLARGFSNKEIARDLGVSPDTVKDHLARLYSKLNAGDRTEAVSRA 187 >gi|111024836|ref|YP_707256.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|29647414|dbj|BAC75412.1| response regulator [Rhodococcus sp. RHA1] gi|110823815|gb|ABG99098.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 209 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E + I+ G T+ EIA L +S TV ++ ASI RK +TR+ Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196 >gi|296163133|ref|ZP_06845904.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295886635|gb|EFG66482.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 181 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I +L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168 >gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis XB6B4] Length = 215 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE+E L +S G + EIA L IS TV N++++I +K R+ Sbjct: 151 LTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199 >gi|293397213|ref|ZP_06641487.1| LuxR family two component transcriptional regulator [Serratia odorifera DSM 4582] gi|291420684|gb|EFE93939.1| LuxR family two component transcriptional regulator [Serratia odorifera DSM 4582] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 31/46 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +LT +E++ L +S+G ++ +IA +L IS TV+ + +I+RKT Sbjct: 141 QLTPKELQVLGLLSKGLSNLQIAAMLNISNKTVSTHKKNILRKTGA 186 >gi|298345706|ref|YP_003718393.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390592|ref|ZP_07372545.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657799|ref|ZP_07910679.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235767|gb|ADI66899.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326348|gb|EFL93593.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491596|gb|EFU81207.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D LT RE+E L +G EIA + +S TV NY++S + KT T +GA Sbjct: 138 DNPLTEREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAISKTHADTSAGA 191 >gi|149927806|ref|ZP_01916057.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149823428|gb|EDM82659.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 209 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Query: 171 NMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +S H +D E L+ RE + + I+ GK EIA L +S TV+ Y A I Sbjct: 128 ELAESLASHLTEDSEKPLHATLSDREFQTIRMIAAGKKLSEIADELSLSPKTVSVYRARI 187 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K KT YA+ N ++ Sbjct: 188 LEKMRMKTNGELTRYALENGLI 209 >gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 288 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS------IMRKTATKTRSGAIA 238 LT RE E L W ++GKT+ EI +I GI+ TV ++ + M KT T++ + Sbjct: 227 LTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 285 >gi|33867217|ref|NP_898775.1| putative response regulator (IpbT) [Rhodococcus erythropolis] gi|33669051|gb|AAP74045.1| putative response regulator (IpbT) [Rhodococcus erythropolis] Length = 209 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E + I+ G T+ EIA L +S TV ++ ASI RK +TR+ Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196 >gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of two-component regulatory systems; Method: conceptual translation supplied by author [Staphylococcus carnosus] Length = 185 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM+K K++ + YA++ + Sbjct: 123 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKKKL 182 Query: 246 V 246 + Sbjct: 183 L 183 >gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 209 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G + +IA LG+S +TV +I I+ + R+ A A+R + Sbjct: 149 LTPRELDILRLIADGLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAAVKALRAGL 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 167 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E + +++G ++ EIA L +S TV ++ ++ K + R + A I Sbjct: 99 LTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGI 158 Query: 246 V 246 V Sbjct: 159 V 159 >gi|294677360|ref|YP_003577975.1| LuxR family autoinducer-binding transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294476180|gb|ADE85568.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 250 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 24/36 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ E L W+ +GKTS +IA ILG + TV ++ Sbjct: 184 LTSRQREVLEWVGDGKTSADIAQILGPTTATVEKHL 219 >gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 592 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1] gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 530 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L +++G+++ EIA L I+ T N++ + K R+ A A+ + Sbjct: 460 LTDREVEILRLVAQGRSNREIAADLFIAEKTARNHVERVYAKLGVNNRTQASLAAIDRGL 519 Query: 246 V 246 V Sbjct: 520 V 520 >gi|33865919|ref|NP_897478.1| DNA-binding response regulator [Synechococcus sp. WH 8102] gi|33633089|emb|CAE07900.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102] Length = 235 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE++ ++ G S+ IA +LGIS TV ++ + M K + R+ Sbjct: 170 ELTQRELDVAAAVARGLKSNAIADLLGISLETVKTHVGNAMDKLGARDRT 219 >gi|300174919|dbj|BAJ10692.1| hypothetical bacteriocin immunity protein [Streptococcus thermophilus] Length = 117 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L ++ EG EIA L IS T+ N+I +I+ K + AI A Sbjct: 55 ELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKA 110 >gi|317054459|ref|YP_004118484.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952454|gb|ADU71928.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 243 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + RE E L W S+G T ++A +L I+ +T+ ++ +++K K AI+ + Sbjct: 173 FSARESEILYWCSKGYTYSQVAEMLNITVSTIKFHMGKVVKKMGVKNAKHAISLGIE 229 >gi|239944068|ref|ZP_04696005.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239990520|ref|ZP_04711184.1| transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291447534|ref|ZP_06586924.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291350481|gb|EFE77385.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D L+ RE+ L+ EG IA L ++ TV NY+A+ +RK+ + R AI A Sbjct: 138 DMPLSPRELSVLSMAEEGDNVAGIAGRLHLTPGTVRNYLAAAIRKSGARNRLDAIRRA 195 >gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 191 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ RE+E L I+ G T+ EIA L IS TV ++++I+ K R+ A +A Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISGKTVKGHVSNILSKLHMLDRTKAAVFA 177 >gi|227876197|ref|ZP_03994313.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|227843158|gb|EEJ53351.1| response regulator [Mobiluncus mulieris ATCC 35243] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G + IA + +S TV NY++S + KT T +GA YA Sbjct: 141 LTPREQEVLREVEAGHHTATIAKTIYLSPGTVRNYLSSAISKTHADTSAGAARYA 195 >gi|237732242|ref|ZP_04562723.1| transcriptional regulator NarP [Citrobacter sp. 30_2] gi|226907781|gb|EEH93699.1| transcriptional regulator NarP [Citrobacter sp. 30_2] Length = 225 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L ++ G ++ EIA L ++ +TV +++S+ RK + R + +A RN Sbjct: 155 DLSPRERDVLALLARGFSNAEIARELFVAESTVKTHVSSLTRKVGVRDRLHVVVWAYRNG 214 Query: 245 I 245 I Sbjct: 215 I 215 >gi|170728214|ref|YP_001762240.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813561|gb|ACA88145.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 221 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +S G + EIA L IS +TV +I+SI RKT ++ R Sbjct: 156 LTKRERTIIQLVSSGARNREIADNLCISEHTVKAHISSIFRKTHSRNR 203 >gi|91786783|ref|YP_547735.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696008|gb|ABE42837.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 210 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K + + S YA++N Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKALSLSVKTVSTYRTRVMEKMSLASNSDLTYYALKNK 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|73539297|ref|YP_299664.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] gi|72122634|gb|AAZ64820.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] Length = 911 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + + +E++ L ++ G+++ IA L +S NTV ++ I +K R+GA++ A++ Sbjct: 848 QFSAKEMQVLALLASGQSNKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVSQAMQQG 907 Query: 245 IV 246 ++ Sbjct: 908 LL 909 >gi|27380416|ref|NP_771945.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27353580|dbj|BAC50570.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 121 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVR 242 T RE E + I+ G + IA L IS NTV +I +IMRK + R+ AI YA++ Sbjct: 28 TPRERELMMLIARGMQNKNIAYELKISENTVRAHIGNIMRKYRLQNRTQIAIIYALK 84 >gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 260 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL + +EG ++ EI+ I+ S TV ++ + +K K R+ A+ A Sbjct: 192 LTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLNAAAKKLGAKNRTQAVVRAT 247 >gi|83745563|ref|ZP_00942621.1| Hypothetical Protein RRSL_04622 [Ralstonia solanacearum UW551] gi|83727640|gb|EAP74760.1| Hypothetical Protein RRSL_04622 [Ralstonia solanacearum UW551] Length = 218 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE + ++ G IA LGISR+TV ++ + RKT T ++ Sbjct: 155 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 204 >gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 215 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/62 (24%), Positives = 40/62 (64%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ ELT RE++ + +++G + +IA I+ +S+ T+ +++++++ KT R+ +A+ Sbjct: 151 RNVELTPRELKVVKLVAQGMANRDIAEIMEVSQRTIESHVSNMLGKTGLHNRTELARWAI 210 Query: 242 RN 243 + Sbjct: 211 ES 212 >gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 208 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE E L ++EG ++ EIA L I TV +I S+M KT + R Sbjct: 151 LSAREQEVLRLVAEGLSNAEIAERLHIGVTTVKTHITSLMTKTGSPNR 198 >gi|298504796|gb|ADI83519.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 215 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE E L I+ GK++ EIA G+S T+ SIM+K + + YA+R + Sbjct: 155 REREVLQLIAAGKSTKEIAFAFGVSLKTIETQRHSIMKKLNLYSIAELTKYAIREGL 211 >gi|291557697|emb|CBL34814.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 207 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ + I++G ++ EIA L +S TV NYI+ I+ KT + R+ Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRT 196 >gi|307729408|ref|YP_003906632.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583943|gb|ADN57341.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 216 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVLKRIAAGQTITEIATELCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 230 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++D+IA L +S TV ++ M K + R+ + A + + Sbjct: 165 LTGREREVLVLVAGGHSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGL 224 Query: 246 V 246 V Sbjct: 225 V 225 >gi|326388719|ref|ZP_08210310.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206793|gb|EGD57619.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 217 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +++ L + EGK + +IA LG+S TV ++ +IMRK + R+ A A A R+ Sbjct: 154 LTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQA-ALAARS 210 >gi|313111442|ref|ZP_07797244.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310883746|gb|EFQ42340.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 204 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L +++ G T+ IA L +S TV+ Y + IM K + +G I +A R+ + Sbjct: 144 LSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHEL 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|300788715|ref|YP_003769006.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798229|gb|ADJ48604.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE++ L +++G + E+A L +S TV NY+ +++ K + R AI A Sbjct: 138 DCPLTARELDVLRMVAQGYGTVEVAARLYLSAGTVRNYLTTVVAKLNARNRVDAIRIA 195 >gi|283786004|ref|YP_003365869.1| nitrate/nitrite response regulator protein [Citrobacter rodentium ICC168] gi|282949458|emb|CBG89071.1| nitrate/nitrite response regulator protein [Citrobacter rodentium ICC168] Length = 215 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|271962179|ref|YP_003336375.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505354|gb|ACZ83632.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L ++ G+T+ EIA IS +TV ++IAS+M K + R Sbjct: 156 LTDREEQILATVARGRTNSEIADEFYISLSTVKSHIASLMAKLGARNR 203 >gi|269976896|ref|ZP_06183870.1| two-component system response regulator [Mobiluncus mulieris 28-1] gi|306819473|ref|ZP_07453180.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|307701243|ref|ZP_07638265.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|269934727|gb|EEZ91287.1| two-component system response regulator [Mobiluncus mulieris 28-1] gi|304647765|gb|EFM45083.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|307613637|gb|EFN92884.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G + IA + +S TV NY++S + KT T +GA YA Sbjct: 141 LTPREQEVLREVEAGHHTATIAKTIYLSPGTVRNYLSSAISKTHADTSAGAARYA 195 >gi|261215329|ref|ZP_05929610.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260916936|gb|EEX83797.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 254 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVPNIMKKIGAANRT 237 >gi|225865300|ref|YP_002750678.1| response regulator [Bacillus cereus 03BB102] gi|225788745|gb|ACO28962.1| response regulator [Bacillus cereus 03BB102] Length = 597 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K R AI A Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 594 Query: 244 NIV 246 NI+ Sbjct: 595 NIL 597 >gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 231 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+ + Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227 Query: 244 NIV 246 + Sbjct: 228 GLA 230 >gi|207738906|ref|YP_002257299.1| hypothetical protein RSIPO_03601 [Ralstonia solanacearum IPO1609] gi|206592277|emb|CAQ59183.1| hypothetical protein RSIPO_03601 [Ralstonia solanacearum IPO1609] Length = 189 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE + ++ G IA LGISR+TV ++ + RKT T ++ Sbjct: 126 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 175 >gi|39995788|ref|NP_951739.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982552|gb|AAR34012.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] Length = 215 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE E L I+ GK++ EIA G+S T+ SIM+K + + YA+R + Sbjct: 155 REREVLQLIAAGKSTKEIAFAFGVSLKTIETQRHSIMKKLNLYSVAELTKYAIREGL 211 >gi|56965096|ref|YP_176828.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911340|dbj|BAD65867.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 201 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L RE E L + G++++ IA + +S TV NY++S M+K T R A+ A Sbjct: 141 LNDREQEMLRRVRNGESTETIASAMHLSLGTVRNYLSSAMQKLETTNRHDALRIA 195 >gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 237 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+++ +V Sbjct: 177 TPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236 >gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I++G T+ EIA L IS TV + ++IM K YA+R+ + Sbjct: 208 LTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGL 267 Query: 246 V 246 + Sbjct: 268 I 268 >gi|301057051|gb|ADK54873.1| LuxR transcriptional regulator [uncultured soil bacterium] Length = 157 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE + L +++ +DEIA LGI+ TVN ++ +I K T+ RS Sbjct: 97 LTAREQDVLRCLAKAYDNDEIADELGIAVRTVNRHLEAIRGKLGTRRRS 145 >gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14] gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14] Length = 228 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L +S G T+ +IA L +S TV ++ I K TR+GA+A A Sbjct: 167 LTDRERDILGQLSRGLTNRDIAKALFLSEATVKTHLGRIYDKLGVDTRAGAVAVA 221 >gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 225 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGREVE L ++ G T+ E A L IS TV ++ M K +R+ A+ A + + Sbjct: 159 LTGREVEVLRLVARGLTNAEAADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAYESGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|291518206|emb|CBK73427.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 210 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +++ +E E + ++EG ++ EIA L +S TV NY+++I+ K + R+ + ++N Sbjct: 152 DISEKEYEVIQLVAEGFSNKEIAQKLFLSEGTVRNYLSTILEKLELRDRTQLAIFYLKN 210 >gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271] gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271] Length = 592 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|52142219|ref|YP_084610.1| response regulator [Bacillus cereus E33L] gi|51975688|gb|AAU17238.1| response regulator [Bacillus cereus E33L] Length = 597 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K R AI A Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 594 Query: 244 NIV 246 NI+ Sbjct: 595 NIL 597 >gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241] gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241] Length = 592 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|30261839|ref|NP_844216.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527080|ref|YP_018429.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184673|ref|YP_027925.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319116|ref|ZP_00392075.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|165869394|ref|ZP_02214053.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|170686283|ref|ZP_02877505.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|170707310|ref|ZP_02897765.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|177650481|ref|ZP_02933448.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190566515|ref|ZP_03019433.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|227815387|ref|YP_002815396.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228933122|ref|ZP_04095982.1| Response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229600997|ref|YP_002866221.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] gi|254683338|ref|ZP_05147199.1| DNA-binding response regulator, LuxR family protein [Bacillus anthracis str. CNEVA-9066] gi|254734693|ref|ZP_05192405.1| DNA-binding response regulator, LuxR family protein [Bacillus anthracis str. Western North America USA6153] gi|254755345|ref|ZP_05207379.1| DNA-binding response regulator, LuxR family protein [Bacillus anthracis str. Vollum] gi|254759882|ref|ZP_05211906.1| DNA-binding response regulator, LuxR family protein [Bacillus anthracis str. Australia 94] gi|30256067|gb|AAP25702.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Ames] gi|47502228|gb|AAT30904.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49178600|gb|AAT53976.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Sterne] gi|164714834|gb|EDR20352.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|170127809|gb|EDS96681.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|170669980|gb|EDT20721.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|172083625|gb|EDT68685.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190562650|gb|EDV16617.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|227003074|gb|ACP12817.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228826536|gb|EEM72310.1| Response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229265405|gb|ACQ47042.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] Length = 212 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L I+ G T+ EIA LGI+ TV +++ +++RK + R Sbjct: 158 LTAREHDVLRLIASGLTNAEIAGHLGIAVGTVKSHVNAVLRKLELRDR 205 >gi|304383484|ref|ZP_07365946.1| transcriptional regulator [Prevotella marshii DSM 16973] gi|304335403|gb|EFM01671.1| transcriptional regulator [Prevotella marshii DSM 16973] Length = 212 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKD LT E E L I+ G T+ EIA S +TVN + +I RK A T A YA Sbjct: 141 GKDL-LTKTETEILKDIALGMTTREIADKRYSSFHTVNTHRKNIFRKIAVNTAYEATKYA 199 Query: 241 VRNNIV 246 +R ++ Sbjct: 200 LRAGLI 205 >gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp Length = 225 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 159 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 217 Query: 245 I 245 I Sbjct: 218 I 218 >gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] Length = 224 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216 Query: 245 I 245 I Sbjct: 217 I 217 >gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE++ + +G + EIA L + +T+ +++ + RK + R+ + +A N + Sbjct: 159 LTGREIDVFRLLVQGYGNAEIARKLVLGESTIKSHVQHLYRKLGVRDRAQVVIFAYENGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|257790383|ref|YP_003180989.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257474280|gb|ACV54600.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 462 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L +++EG + I+ +L IS NTV +I +I RK +R Sbjct: 406 LTAREQEILAYLAEGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453 >gi|226349997|ref|YP_002777110.1| two-component response regulator [Rhodococcus opacus B4] gi|226245909|dbj|BAH47173.1| two-component response regulator [Rhodococcus opacus B4] Length = 209 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E + I+ G T+ EIA L +S TV ++ ASI RK +TR+ Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196 >gi|255606123|ref|XP_002538507.1| Response regulator gacA, putative [Ricinus communis] gi|223511807|gb|EEF23876.1| Response regulator gacA, putative [Ricinus communis] Length = 268 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E ++EGK +++IA L +S TV NY +I +K + + A+R+ Sbjct: 205 QLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQKLGITSPVEMVRLAIRHG 264 Query: 245 IV 246 ++ Sbjct: 265 VI 266 >gi|186470626|ref|YP_001861944.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196935|gb|ACC74898.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 489 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE++ L IS+G ++ E+A L +S +TV ++ S+ RK TR Sbjct: 429 LSAREIDVLRGISQGASNKEVARDLSLSPSTVRTHVESVFRKLDCSTR 476 >gi|323357168|ref|YP_004223564.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273539|dbj|BAJ73684.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 200 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L + G+T EIA L +S TV N+++S++ K +R A +A Sbjct: 140 LTDRELDVLRAGARGETVAEIAASLHLSAGTVRNHVSSVLGKLGLASRQQATIHA 194 >gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] Length = 592 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W] gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W] Length = 592 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQRALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE E L I G ++ EIA L +S TV N++ S++ + + R+ A Sbjct: 177 LTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVTSVLSRLGLRDRTQA 227 >gi|149375232|ref|ZP_01893004.1| ATP-dependent transcriptional regulator [Marinobacter algicola DG893] gi|149360596|gb|EDM49048.1| ATP-dependent transcriptional regulator [Marinobacter algicola DG893] Length = 907 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L I++G + +IA +G++ TV +I ++ K A +R+ A+A A Sbjct: 846 LSQRELEVLDLINQGLANKDIANTMGVAPTTVKAHIRNLYGKLAVGSRTEALAKA 900 >gi|126726482|ref|ZP_01742323.1| autoinducer-binding transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126704345|gb|EBA03437.1| autoinducer-binding transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 273 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 26/36 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R++E L W+++GKT+ + A I+G++ T+ ++ Sbjct: 204 LTKRQIEVLEWVADGKTTADAATIMGLTNATIEKHL 239 >gi|330809600|ref|YP_004354062.1| two-component Response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377708|gb|AEA69058.1| Putative two-component Response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 210 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Y A + + + D ELT RE + L + +G + E+A L IS TV + SI RK Sbjct: 130 YSAEIAQRLATNPNTDSELTPRESQVLAKMVQGLNNKEMARELDISVRTVETHRLSIRRK 189 Query: 228 TATKTRSGAIAYAVRNNIV 246 + + YA+ + I+ Sbjct: 190 LNIDKPAALVKYAIDHGII 208 >gi|317124121|ref|YP_004098233.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588209|gb|ADU47506.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 976 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L + G+T EIA L IS TV+ ++++++RKT T +R Sbjct: 916 LTRREREVLGHLVVGRTYAEIARDLFISDKTVSVHVSNLLRKTGTSSR 963 >gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L ++EG ++ +IA L ++ TV N++++I+ K T R+ A A Sbjct: 163 LSPREIEILKLLAEGASNRKIAEQLVLAEGTVKNHVSNILSKLHTGNRTQAAHLA 217 >gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I+EG T+ +IA + ++ TV NY++S++ K ++R+ A +A + Sbjct: 162 LTDQERRILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLESRTQAAVFATK 218 >gi|228945442|ref|ZP_04107796.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814245|gb|EEM60512.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 212 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803] gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803] Length = 557 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 494 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 553 Query: 244 NIV 246 I+ Sbjct: 554 GII 556 >gi|294815293|ref|ZP_06773936.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|326443648|ref|ZP_08218382.1| transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|294327892|gb|EFG09535.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] Length = 251 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 25/39 (64%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 RE + L IS+G T +IA LGISR+TV+ Y+ I K Sbjct: 177 RESQVLGQISQGLTHGQIATRLGISRHTVDTYVKRIRTK 215 >gi|224583267|ref|YP_002637065.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467794|gb|ACN45624.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 238 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 177 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRIAA 227 >gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] Length = 233 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L W + GK+ +I IL IS TV ++ S K T A+ A+ Sbjct: 170 LSSRELEILQWAAAGKSQQDIGDILSISHRTVEVHLRSSREKLNALTTPQAVGRAI 225 >gi|86140863|ref|ZP_01059422.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] gi|85832805|gb|EAQ51254.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] Length = 208 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT R++E L I++GKTS EIA L I +TV+ + ++MR K + + YA+ Sbjct: 147 LTKRQLEILRLIAQGKTSREIADELFIGVHTVDTHRKNMMRILELKGKGELLRYAL 202 >gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] Length = 215 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I +G ++ EIA L +S +TV +++ ++ KT ++R+ A A RN Sbjct: 155 DLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSRVLTKTGCQSRAQAAVLA-RNT 213 Query: 245 I 245 + Sbjct: 214 L 214 >gi|318060430|ref|ZP_07979153.1| transcriptional regulator [Streptomyces sp. SA3_actG] gi|318081237|ref|ZP_07988569.1| transcriptional regulator [Streptomyces sp. SA3_actF] Length = 197 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+ L +EG++ IA L ++ TV NY+A+ +RKT + R AI A Sbjct: 137 LSDRELSVLGLAAEGESVAGIAGGLHLAAGTVRNYLAAAIRKTGARNRLDAIRLA 191 >gi|307726840|ref|YP_003910053.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587365|gb|ADN60762.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 223 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +L+ RE E L I++G+T+ EIA L I+ TV ++ I+RK +R Sbjct: 163 DLSVREAEILEHIAQGRTNKEIARALNIAEATVKIHVQHILRKLKLSSR 211 >gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I +G ++ EIA L +S +TV +++ ++ KT ++R+ A A RN Sbjct: 171 DLTEREVDVLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA-RNT 229 Query: 245 I 245 + Sbjct: 230 L 230 >gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 219 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L I++ T+ EIA L IS TV+ + ++++K K+ G +A+R+ Sbjct: 158 QLTPRELEILKLIAQEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSIVGLANFAIRHG 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|213850302|ref|ZP_03381200.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 217 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|170726344|ref|YP_001760370.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169811691|gb|ACA86275.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 205 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 ++P + ++ + L + LL ++ +S + ELT R+ E L W+ GK++ EI Sbjct: 91 MYPAIQYVVINELLKEVLLNKTTSDEPQSNEGECISTIELTQRQHEILHWVKLGKSNWEI 150 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + IL IS +TV ++ I ++ R A+ Sbjct: 151 STILSISIDTVKFHLRGIYKRLGVSNRVQAV 181 >gi|332829196|gb|EGK01860.1| hypothetical protein HMPREF9455_02008 [Dysgonomonas gadei ATCC BAA-286] Length = 292 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S+ + K L+ RE++ L ++ G + E+A L IS NTV ++ +I K KT S Sbjct: 214 SHAIKATKAQALSQRELDVLRLVALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVS 273 Query: 235 GAIAYAVRNNIV 246 G I Y + N + Sbjct: 274 GLIFYCMTNGYI 285 >gi|317488814|ref|ZP_07947347.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316912119|gb|EFV33695.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 462 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L +++EG + I+ +L IS NTV +I +I RK +R Sbjct: 406 LTAREQEILAYLAEGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453 >gi|317505003|ref|ZP_07962951.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315663885|gb|EFV03604.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 318 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +L+ RE + + + +G ++ EIA L IS NTV + +I RK + +G YA+ Sbjct: 248 DDQLSQREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIV 307 Query: 243 NNIV 246 N++V Sbjct: 308 NHLV 311 >gi|163732991|ref|ZP_02140435.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] gi|161393526|gb|EDQ17851.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] Length = 159 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%) Query: 168 YQANMFKSYDVHWG------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + ++ KSYD+H G K FE G+ E L I + + + LGIS VN+Y Sbjct: 42 HNESLLKSYDIHLGFAPVGHKQFEGDGKTPEGLYRIDRRNPNSDFHLSLGISYPNVNDYA 101 Query: 222 ASIMRKTATKTRSGAI 237 A+ K K+ G I Sbjct: 102 AA---KAVGKSAGGDI 114 >gi|153808058|ref|ZP_01960726.1| hypothetical protein BACCAC_02344 [Bacteroides caccae ATCC 43185] gi|149129667|gb|EDM20881.1| hypothetical protein BACCAC_02344 [Bacteroides caccae ATCC 43185] Length = 184 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ E+ + + +G ++EIA L +S +TV N+I S+ K +S I YA +NN+ Sbjct: 122 ISDAEMRVMQMVYQGANNEEIADKLYLSPHTVKNHIKSVYIKLGIHEKSEFIQYAHKNNL 181 >gi|145588866|ref|YP_001155463.1| response regulator receiver protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047272|gb|ABP33899.1| response regulator receiver protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 187 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 S DV +D+E LT RE E W+ +G + +IAV LG + T+ + A +M K Sbjct: 109 SLDVETKRDYENLTPREREVCAWLVKGLLNKDIAVKLGTTDATIKVHKARVMDK 162 >gi|54023132|ref|YP_117374.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54014640|dbj|BAD56010.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 863 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+ L + G+T +IA LG+S NTV ++ I K +R GA+ A R+ + Sbjct: 803 LTDTELLVLKQLPTGRTVGQIAADLGVSINTVKTHLRGIYGKLGANSRVGALDTARRSGL 862 Query: 246 V 246 + Sbjct: 863 L 863 >gi|310643281|ref|YP_003948039.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309248231|gb|ADO57798.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 216 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G + E+A L IS TV A IM K K+R + YA++ + Sbjct: 154 LSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLKSRPELVQYALKKKM 213 Query: 246 V 246 + Sbjct: 214 L 214 >gi|298245139|ref|ZP_06968945.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552620|gb|EFH86485.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 337 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LTGRE E L + G+ + EIA L I+ +TV+ ++ +I K + R+ AI + Sbjct: 221 LTGREREILDLMRLGRKNREIAKELCIAESTVHKHVQNIFEKLRARNRTEAIYF 274 >gi|291301776|ref|YP_003513054.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570996|gb|ADD43961.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 132 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ + +S GK++ I L IS +TV Y + RK R+ A+A A+R + Sbjct: 71 LTERELTVVIGMSNGKSNARIGRELHISEDTVKTYARRLFRKLGVGDRTQAVAVALRTGL 130 Query: 246 V 246 + Sbjct: 131 I 131 >gi|288926112|ref|ZP_06420040.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] gi|288337152|gb|EFC75510.1| transcriptional regulator, LuxR family domain protein [Prevotella buccae D17] Length = 313 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + + +G T+ EIA L IS NTV + +I +K + +G YA+ NN+ Sbjct: 246 LSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIVNNL 305 Query: 246 V 246 V Sbjct: 306 V 306 >gi|226315402|ref|YP_002775298.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226098352|dbj|BAH46794.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 596 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 31/63 (49%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE E L +S+G IA L +S TV NY +++ K R AI A Sbjct: 534 YGLTKREREILQLLSDGLRYKSIATKLYLSEGTVRNYCSTLYSKLGVSNREEAIELARTE 593 Query: 244 NIV 246 NI+ Sbjct: 594 NIL 596 >gi|167839763|ref|ZP_02466447.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 257 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + KD ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 149 SYRIDSPKDARELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 208 Query: 234 SGAIAYAV 241 + I A Sbjct: 209 NELIDLAA 216 >gi|17988034|ref|NP_540668.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62289171|ref|YP_220964.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|17983780|gb|AAL52932.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62195303|gb|AAX73603.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] Length = 230 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 165 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 213 >gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] Length = 206 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L +S+G T+ +IA GIS NTV ++ ++ K + R+ A+A R Sbjct: 139 QLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYAR 196 >gi|87309029|ref|ZP_01091167.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] gi|87288372|gb|EAQ80268.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] Length = 220 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E T I G+TS EIA L +S +TV+ + + RK + K+ + I A++ Sbjct: 158 LTNREREIFTMIGHGQTSAEIASQLNLSVHTVDTHRERLCRKISAKSSAELIRRAMQ 214 >gi|330468719|ref|YP_004406462.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] gi|328811690|gb|AEB45862.1| regulatory protein, LuxR [Verrucosispora maris AB-18-032] Length = 956 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++EG T+ EI L IS T+ +++ I K +TR A A +R+ Sbjct: 897 LTAREREVLAAVAEGLTNREIGQRLYISERTIGVHVSHIFDKLQVRTRVQASAIFLRS 954 >gi|302535729|ref|ZP_07288071.1| luxR family two component system response regulator [Streptomyces sp. C] gi|302444624|gb|EFL16440.1| luxR family two component system response regulator [Streptomyces sp. C] Length = 203 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G EIA +S+ TV NY++S K + R Sbjct: 132 AADAISAGDSPLTAREAEVLELAADGAPIAEIAERASLSQGTVRNYLSSAATKLGAENRH 191 Query: 235 GAI 237 A+ Sbjct: 192 TAV 194 >gi|254713235|ref|ZP_05175046.1| Monoamine regulon transcriptional regulator [Brucella ceti M644/93/1] gi|254716411|ref|ZP_05178222.1| Monoamine regulon transcriptional regulator [Brucella ceti M13/05/1] Length = 245 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228 >gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G T+ EIA L IS TV ++ + K K R+ A+A I Sbjct: 156 LSAREREVLVLVARGTTNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGI 215 Query: 246 V 246 + Sbjct: 216 L 216 >gi|254461185|ref|ZP_05074601.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacterales bacterium HTCC2083] gi|206677774|gb|EDZ42261.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium HTCC2083] Length = 251 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 26/36 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ E L W+ +GKT+ +IA+++G++ TV ++ Sbjct: 185 LTDRQREALEWVGDGKTTQDIALLMGLTAATVEKHL 220 >gi|170728910|ref|YP_001762936.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814257|gb|ACA88841.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 198 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 G++ L+ +E + L SEGKT+ EIA +L I+ TV NY++ K R Sbjct: 133 GENDPLSDKERKALRLASEGKTTSEIAALLFIAEGTVRNYLSEATSKLHGSNR 185 >gi|312960770|ref|ZP_07775275.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284428|gb|EFQ63004.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 218 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R+ + L I+ GKT+ EIA L IS TV +++++++ TR+ A A Sbjct: 149 LTARQKQVLGLIAAGKTNKEIAKQLDISPFTVRIHVSTLLKSLGVPTRAAAAA 201 >gi|308454233|ref|XP_003089765.1| hypothetical protein CRE_07125 [Caenorhabditis remanei] gi|308269000|gb|EFP12953.1| hypothetical protein CRE_07125 [Caenorhabditis remanei] Length = 831 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E + ++ ++ EIA+ LG+SR TV N++A+ +RKT+ + R + +N Sbjct: 775 LSKREAE-VARLAVTMSNPEIAMRLGLSRRTVENHVANALRKTSLRNRRELAEFVEQN 831 >gi|302538423|ref|ZP_07290765.1| response regulator [Streptomyces sp. C] gi|302447318|gb|EFL19134.1| response regulator [Streptomyces sp. C] Length = 223 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REVE L I+ G + IA L +S TV N+I + K +R+ A+A A Sbjct: 159 LTSREVEVLELIARGHDNRRIARELVLSEKTVRNHITHVFEKLQVTSRAEAVARA 213 >gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG] gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF] Length = 223 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I +G ++ EIA L +S +TV +++ ++ KT ++R+ A A RN Sbjct: 163 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA-RNT 221 Query: 245 I 245 + Sbjct: 222 L 222 >gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341] gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341] Length = 224 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216 Query: 245 I 245 I Sbjct: 217 I 217 >gi|291302684|ref|YP_003513962.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571904|gb|ADD44869.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ GK++ EI L I+ +TV + + RK + R+ A+A A R I Sbjct: 73 LSARESQVLLAIASGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRVGI 132 Query: 246 V 246 + Sbjct: 133 L 133 >gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L +S G ++ E+A L IS TV ++ I +K +TR+ A+ A Sbjct: 145 LSTRELEILRALSTGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVA 199 >gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ST398] gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11] gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46] Length = 200 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM K K++ + YA++ + Sbjct: 138 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 197 Query: 246 V 246 + Sbjct: 198 L 198 >gi|194467990|ref|ZP_03073976.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] gi|194452843|gb|EDX41741.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] Length = 217 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 172 MFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + K +H+ G L+ RE E L I G T+ EIA + IS TV + IM+K Sbjct: 139 VIKGGSMHFDLGNYIALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLN 198 Query: 230 TKTRSGAIAYAVRNNIV 246 + + + YAV++ +V Sbjct: 199 LASHAELLHYAVKHQLV 215 >gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus cereus ATCC 10987] gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC 10987] Length = 592 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 I+ Sbjct: 589 GII 591 >gi|291530798|emb|CBK96383.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium siraeum 70/3] Length = 207 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ + I++G ++ EIA L +S TV NYI+ I+ KT + R+ Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRT 196 >gi|291614955|ref|YP_003525112.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585067|gb|ADE12725.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 216 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 167 AYQANMFKSY-DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A A+M + + H F ELT RE L +S+G T+ EI ++ TV +Y+ SI Sbjct: 131 ALAADMLTEFSNPHPIDSFSELTARETTILELLSQGLTNREIGERTYLAEKTVKHYMTSI 190 Query: 225 MRKTATKTRSGAIAYAVRNN 244 ++K ++R+ A A++ + Sbjct: 191 LQKLHVRSRTEAALIAMQRH 210 >gi|167749619|ref|ZP_02421746.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702] gi|167657372|gb|EDS01502.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702] Length = 207 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ + I++G ++ EIA L +S TV NYI+ I+ KT + R+ Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRT 196 >gi|83815376|ref|YP_444329.1| ECF subfamily RNA polymerase sigma-70 factor [Salinibacter ruber DSM 13855] gi|83756770|gb|ABC44883.1| possible sigma-70 factor, ECF subfamily, putative [Salinibacter ruber DSM 13855] Length = 194 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMR 226 QA+ + D W ELTGR+ E L EG + +E A ++GIS TVNN+I ++ Sbjct: 117 QADADQLEDRLWQWIGELTGRQREALVLTRFEGLSHEEAADVMGISPRTVNNHIVRALK 175 >gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+ + Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227 Query: 244 NIV 246 + Sbjct: 228 GLA 230 >gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8] gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8] Length = 236 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE + L +SEG + EIA L +SR TV ++ I RK A +R+ AI +A R Sbjct: 175 LSPRESQILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLAVSSRTRAI-HAART 231 >gi|303237715|ref|ZP_07324275.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] gi|302482167|gb|EFL45202.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] Length = 203 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ + +G + EIA L IS TV + +IM K K+ S YAV + Sbjct: 138 LSNREIEVLSLVVQGYINKEIASKLCISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 197 Query: 246 V 246 V Sbjct: 198 V 198 >gi|302036302|ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604366|emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 216 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 35/70 (50%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + G LTGR+ E L I+EG ++ +IA L +S TV + A +M + G Sbjct: 144 EAQTGPLARLTGRQREILQLIAEGCSTKQIAQRLDLSVKTVETHRAQLMERLDIHDVPGL 203 Query: 237 IAYAVRNNIV 246 + A+R +V Sbjct: 204 VRLAIRTGLV 213 >gi|300694488|ref|YP_003750461.1| transcription regulator protein luxr [Ralstonia solanacearum PSI07] gi|299076525|emb|CBJ35850.1| putative transcription regulator protein LuxR [Ralstonia solanacearum PSI07] Length = 216 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F LT REV+ ++ G IA LGISR+TV ++ + RKT T Sbjct: 153 FHLTRREVDVADLLARGAGPALIARTLGISRDTVRTHLKHVYRKTNTH 200 >gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 13/122 (10%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 D R L + + G LL P R+I R +L+A Q + + G D Sbjct: 112 DTRPADLLAAIRTVAAGESLLSPGPTSRLIAR-------VLSAPQ---VPAANGAGGPDV 161 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + LT ++ G + EIA LG+S T +++ IM K + R+ + A + Sbjct: 162 -LTDRERQVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCARDRAQLVIVAYESG 220 Query: 245 IV 246 +V Sbjct: 221 LV 222 >gi|160890178|ref|ZP_02071181.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492] gi|156860566|gb|EDO53997.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492] Length = 254 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 28/45 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 D +L+ RE E L I +G S EIA LG+S TVNN+ +I+ K Sbjct: 190 DKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSK 234 >gi|116694576|ref|YP_728787.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529075|emb|CAJ95422.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 379 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K F LT E+E + +G T DE A+ LGI +NT ++ I KT TR + + Sbjct: 313 KLFHLTPTEIELALLMVDGLTLDEAAMRLGIKKNTARAHLRGIFAKTGA-TRQALLVKML 371 Query: 242 RNNIV 246 +++V Sbjct: 372 LSSVV 376 >gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24] gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24] gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24] Length = 221 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + S +G +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + Sbjct: 147 LMPSAQAAYG---DLTDRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKLGLR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 204 DRTQAAVFAYEARLV 218 >gi|15595232|ref|NP_248724.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107099028|ref|ZP_01362946.1| hypothetical protein PaerPA_01000036 [Pseudomonas aeruginosa PACS2] gi|116053755|ref|YP_788190.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|152985987|ref|YP_001345432.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|218888780|ref|YP_002437644.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254237723|ref|ZP_04931046.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719] gi|254243146|ref|ZP_04936468.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192] gi|296386510|ref|ZP_06876009.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|13959718|sp|P24908|TRPO_PSEAE RecName: Full=Putative transcriptional regulator gi|9945855|gb|AAG03424.1|AE004443_2 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115588976|gb|ABJ14991.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169654|gb|EAZ55165.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719] gi|126196524|gb|EAZ60587.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192] gi|150961145|gb|ABR83170.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] gi|218769003|emb|CAW24761.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 207 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L +++ G T+ IA L +S TV+ Y + IM K + +G I +A R+ + Sbjct: 147 LSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHEL 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G T+DEIA L +S T +++ IM K + RS + A + + Sbjct: 155 LTDREREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYESGM 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|296130130|ref|YP_003637380.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296021945|gb|ADG75181.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 208 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY-AVRNN 244 LT E+ L I EG ++ EIA LG++ TV N+I S++ K + R+ A+ A R N Sbjct: 140 LTPSELRVLDLIGEGMSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAAWVASRKN 199 >gi|258593101|emb|CBE69412.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 227 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L +I+ G+T+ IA L IS T N+ I+ K T+ A+A A R Sbjct: 167 LTPREQEVLRFIARGETAKGIAKALQISTTTARNHTQKILVKLGLHTKLEAVAVAYR 223 >gi|291085111|ref|ZP_06352103.2| nitrate/nitrite response regulator protein NarL [Citrobacter youngae ATCC 29220] gi|291072010|gb|EFE10119.1| nitrate/nitrite response regulator protein NarL [Citrobacter youngae ATCC 29220] Length = 225 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 210 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + EG ++ +I+ L +S+ TV +++ I K +R+ A+A A + Sbjct: 148 LTKRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 188 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E + +++G T+ EIA L IS T N++A++ K R G A+A Sbjct: 124 LSERELEVVALVAQGLTNAEIAEKLFISAGTAKNHLANVQAKLGVGNRVGIAAWA 178 >gi|207722432|ref|YP_002252868.1| hypothetical protein RSMK05040 [Ralstonia solanacearum MolK2] gi|206587611|emb|CAQ18193.1| hypothetical protein RSMK05040 [Ralstonia solanacearum MolK2] Length = 218 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE + ++ G IA LGISR+TV ++ + RKT T ++ Sbjct: 155 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 204 >gi|297193217|ref|ZP_06910615.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720487|gb|EDY64395.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 221 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + R+ A AY R Sbjct: 157 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRAQAAAYVAR 213 >gi|190894996|ref|YP_001985289.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|190700657|gb|ACE94739.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|327193288|gb|EGE60194.1| transcriptional activator protein [Rhizobium etli CNPAF512] Length = 241 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++CL + G + +I L IS + V Y+AS RK T S A+A A Sbjct: 181 LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 235 >gi|170741132|ref|YP_001769787.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168195406|gb|ACA17353.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 251 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT ++V L I +GK + +IA LG+ +TV +++ I+RK +R+ Sbjct: 181 ELTPQQVRVLLMIRQGKLNKQIAHELGVGDSTVKAHVSEILRKLGVISRT 230 >gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 237 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+++ +V Sbjct: 177 TPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236 >gi|85858970|ref|YP_461172.1| LuxR family regulatory protein [Syntrophus aciditrophicus SB] gi|85722061|gb|ABC77004.1| bacterial regulatory protein, LuxR family [Syntrophus aciditrophicus SB] Length = 310 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGIS-------RNTVNNYIASIMRKT 228 T +E++ + I EGK + EIA ILGIS RN++ N + I +KT Sbjct: 251 FTPKEIQVASLIKEGKRTKEIAQILGISKSAIDLHRNSIRNKLGLINKKT 300 >gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 231 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+ + Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227 Query: 244 NIV 246 + Sbjct: 228 GLA 230 >gi|42523606|ref|NP_968986.1| two-component response regulator [Bdellovibrio bacteriovorus HD100] gi|39575812|emb|CAE79979.1| two-component response regulator [Bdellovibrio bacteriovorus HD100] Length = 204 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 163 GLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 LLA + F S ++ D LT RE+E I+ G+++ EIA +LG S T+ Sbjct: 117 ALLALKRGERFLSANIREAIDKAGVEVLTKREIEVARMIATGRSNKEIAEVLGCSDQTIK 176 Query: 219 NYIASIMRKTATKT 232 + +IM K T Sbjct: 177 THKTNIMTKLGVNT 190 >gi|326624070|gb|EGE30415.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 198 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 137 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 187 >gi|313673833|ref|YP_004051944.1| two component transcriptional regulator, luxr family [Calditerrivibrio nitroreducens DSM 19672] gi|312940589|gb|ADR19781.1| two component transcriptional regulator, LuxR family [Calditerrivibrio nitroreducens DSM 19672] Length = 209 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E ++EGKT EIA G S TV N +IM+K KT I A++ Sbjct: 145 FGLTNAEKIVFKMLAEGKTPKEIAYETGKSIKTVENQRGAIMKKLNFKTEVELIKLALKL 204 Query: 244 NIV 246 NI+ Sbjct: 205 NII 207 >gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 37/70 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D H + LT RE + L ++EG ++ EI ++ +S TV +++++I+ K R A Sbjct: 141 DEHVARFGLLTERERQVLVLVAEGLSNAEIGTVVHLSEGTVKDHVSAILGKLGVAGRVRA 200 Query: 237 IAYAVRNNIV 246 A R ++ Sbjct: 201 ALLAQRAGLL 210 >gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 206 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 36/75 (48%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Y F S + +T RE E L I+EG T+ EIA L IS TVN + S++ K Sbjct: 128 YSQEAFSSLRIPAPDQLLITRREKEVLLLIAEGLTNAEIAEKLFISIPTVNTHRKSLIEK 187 Query: 228 TATKTRSGAIAYAVR 242 K + I A++ Sbjct: 188 FNVKNTAMLIGKAIK 202 >gi|255533128|ref|YP_003093500.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255346112|gb|ACU05438.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 263 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W++EG +S IA + +S +T+ ++ ++ KT T + I++A++ +I Sbjct: 203 FSKREKEVLLWMAEGLSSKMIAEKMFVSEHTIISHRRNMQDKTNTPNATALISFALKKSI 262 Query: 246 V 246 + Sbjct: 263 I 263 >gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus TW20] gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus T0131] Length = 200 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM K K++ + YA++ + Sbjct: 138 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 197 Query: 246 V 246 + Sbjct: 198 L 198 >gi|82699111|ref|YP_413685.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|163842464|ref|YP_001626868.1| monoamine regulon transcriptional regulator [Brucella suis ATCC 23445] gi|189023446|ref|YP_001934214.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225851728|ref|YP_002731961.1| monoamine regulon transcriptional regulator [Brucella melitensis ATCC 23457] gi|254690497|ref|ZP_05153751.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|254696618|ref|ZP_05158446.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254701000|ref|ZP_05162828.1| Monoamine regulon transcriptional regulator [Brucella suis bv. 5 str. 513] gi|254709343|ref|ZP_05171154.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis B2/94] gi|254731531|ref|ZP_05190109.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|256030866|ref|ZP_05444480.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|256045986|ref|ZP_05448858.1| Monoamine regulon transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256112698|ref|ZP_05453619.1| Monoamine regulon transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|256264760|ref|ZP_05467292.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260169768|ref|ZP_05756579.1| Monoamine regulon transcriptional regulator [Brucella sp. F5/99] gi|260546468|ref|ZP_05822208.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260563267|ref|ZP_05833753.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|261759311|ref|ZP_06003020.1| bacterial regulatory protein [Brucella sp. F5/99] gi|294851595|ref|ZP_06792268.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL 07-0026] gi|82615212|emb|CAJ10153.1| Bacterial regulatory protein, LuxR family [Brucella melitensis biovar Abortus 2308] gi|163673187|gb|ABY37298.1| Monoamine regulon transcriptional regulator [Brucella suis ATCC 23445] gi|189019018|gb|ACD71740.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225640093|gb|ACO00007.1| Monoamine regulon transcriptional regulator [Brucella melitensis ATCC 23457] gi|260096575|gb|EEW80451.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260153283|gb|EEW88375.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|261739295|gb|EEY27291.1| bacterial regulatory protein [Brucella sp. F5/99] gi|263095169|gb|EEZ18838.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|294820184|gb|EFG37183.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL 07-0026] gi|326408219|gb|ADZ65284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326537934|gb|ADZ86149.1| monoamine regulon transcriptional regulator [Brucella melitensis M5-90] Length = 245 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228 >gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166] Length = 194 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+ +G ++ EIA L +S +T+ ++I +++RK R+ A AY +R+++ Sbjct: 128 LTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 186 >gi|315608389|ref|ZP_07883377.1| transcriptional regulator [Prevotella buccae ATCC 33574] gi|315249849|gb|EFU29850.1| transcriptional regulator [Prevotella buccae ATCC 33574] Length = 318 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + + +G T+ EIA L IS NTV + +I +K + +G YA+ NN+ Sbjct: 251 LSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 207 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G+++ EIA L I+ TV +++ I K +R+ A++ A I Sbjct: 145 LSPREIEVLERVAAGRSNGEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGI 204 Query: 246 V 246 + Sbjct: 205 L 205 >gi|254488074|ref|ZP_05101279.1| two component response regulator [Roseobacter sp. GAI101] gi|214044943|gb|EEB85581.1| two component response regulator [Roseobacter sp. GAI101] Length = 218 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Query: 182 KDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 KD E LT RE L +++G+++ E+A+ L IS TV + +I RK + +G Sbjct: 144 KDDERESLTEREQTILLQLAQGQSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTR 203 Query: 239 YAVRNNIV 246 YA+ + ++ Sbjct: 204 YAMEHGVL 211 >gi|254390344|ref|ZP_05005561.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704048|gb|EDY49860.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A A+ R Sbjct: 157 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVAR 213 >gi|254418089|ref|ZP_05031813.1| HTH DNA binding domain family [Brevundimonas sp. BAL3] gi|196184266|gb|EDX79242.1| HTH DNA binding domain family [Brevundimonas sp. BAL3] Length = 147 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE+EC+ ++ EIA +LGI+ +TV NY+ S K T R A Sbjct: 4 LTRREIECVQLAGLRLSNQEIADVLGITPSTVANYLQSANAKLGTSHRRAA 54 >gi|171910618|ref|ZP_02926088.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 213 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E LT +++G EIA LGIS +TV ++ I K +TR+ A+ Sbjct: 155 LTPREFEILTQLAKGLQYKEIADQLGISTSTVRGHLHVIYGKLHVQTRTEAV 206 >gi|320537074|ref|ZP_08037052.1| transcriptional regulator, LuxR family [Treponema phagedenis F0421] gi|320146077|gb|EFW37715.1| transcriptional regulator, LuxR family [Treponema phagedenis F0421] Length = 386 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 K+F L+ RE L I +G T EIA L + T+ NY + + +K R A Sbjct: 315 KNFNLSKREYIILELICQGSTGKEIAYKLNLKEQTIKNYTSRLYKKLGVTGRVEA 369 >gi|320538833|ref|ZP_08038509.1| putative AHL-dependent transcriptional regulator [Serratia symbiotica str. Tucson] gi|320030993|gb|EFW12996.1| putative AHL-dependent transcriptional regulator [Serratia symbiotica str. Tucson] Length = 82 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 25/39 (64%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 RE E L W S GKT EIA I GIS +TV ++ +I+ K Sbjct: 41 RENEVLYWSSMGKTYGEIAAIAGISVSTVKFHMGNIVSK 79 >gi|302327479|gb|ADL26680.1| transcriptional regulator, LuxR family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 450 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT R+ E L+ + +G T+ EI LGIS NTV ++A+I + R A++ N Sbjct: 9 ELTPRQKEILSLLRKGLTNAEICRTLGISANTVKVHLANIYKILEVTNRIEAVSTQEEPN 68 Query: 245 I 245 + Sbjct: 69 V 69 >gi|288962972|ref|YP_003453266.1| two-component response regulator [Azospirillum sp. B510] gi|288915238|dbj|BAI76722.1| two-component response regulator [Azospirillum sp. B510] Length = 216 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +++ L I+EGK + +IA + ++ TV ++ +I+RK TR+ A A Sbjct: 148 LTPQQLRVLAGIAEGKLNKQIAYEMNVAETTVKAHVTTILRKLGVLTRTQAAVLA 202 >gi|284041993|ref|YP_003392333.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946214|gb|ADB48958.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 122 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT RE E L WI+ G+ + A ++GIS TV ++ ++ K +T Sbjct: 41 EGLGLTPREAEALRWIALGRRGPDAARLMGISPRTVEKHLQNVYAKLGVRT 91 >gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223] gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223] Length = 224 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216 Query: 245 I 245 I Sbjct: 217 I 217 >gi|254718410|ref|ZP_05180221.1| Monoamine regulon transcriptional regulator [Brucella sp. 83/13] gi|306840178|ref|ZP_07472961.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653] gi|306404743|gb|EFM61039.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653] Length = 245 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 180 LTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228 >gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L I++G+T+ EIA L +S TV ++ I+ K + R A+ +A Sbjct: 153 LTDREREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRILAKLQLRDRVQAVIWA 207 >gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli GR56] Length = 265 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL +EG ++ EI+ I+G S TV ++ + +K + R+ A+ A Sbjct: 198 HLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRAT 254 >gi|163737655|ref|ZP_02145072.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis BS107] gi|163740771|ref|ZP_02148164.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis 2.10] gi|161385762|gb|EDQ10138.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis 2.10] gi|161389181|gb|EDQ13533.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis BS107] Length = 210 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE E + + EGKTS EIA LG+S TV + A +++K Sbjct: 142 LTRREREVYSLLCEGKTSKEIARSLGLSYRTVEVHRARLLKK 183 >gi|221069285|ref|ZP_03545390.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220714308|gb|EED69676.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 212 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ G+ EIA L +S TV+ Y A ++ K + + AYA++N + Sbjct: 149 LSEREMQTLLKIASGQRQTEIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|27382418|ref|NP_773947.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355589|dbj|BAC52572.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + ++EG ++ I+ IL +S T + A+ MRK + +G + YAVR + Sbjct: 163 LTPREQLVVKLVAEGYSNKGISAILNLSVKTTEAHRAAAMRKLDVNSTAGLVRYAVRAQL 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|89070144|ref|ZP_01157473.1| DNA-binding response regulator, LuxR family protein [Oceanicola granulosus HTCC2516] gi|89044261|gb|EAR50407.1| DNA-binding response regulator, LuxR family protein [Oceanicola granulosus HTCC2516] Length = 211 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L +++G+++ E+A++L IS TV + +I RK + +G YA+ + + Sbjct: 146 LTTREQTILLRLAQGRSNKEVALLLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 205 Query: 246 V 246 + Sbjct: 206 L 206 >gi|325000569|ref|ZP_08121681.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Pseudonocardia sp. P1] Length = 101 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + EG T+ +IA L +S TV N++ ++RK R + A+ + + Sbjct: 41 LSPRESEVLRLVVEGLTAKQIAGRLVLSPRTVENHVQRLLRKFGVPGRGALVRRAIEHGL 100 >gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 158 DLTERETEVLVLIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|256158896|ref|ZP_05456746.1| Monoamine regulon transcriptional regulator [Brucella ceti M490/95/1] gi|256254270|ref|ZP_05459806.1| Monoamine regulon transcriptional regulator [Brucella ceti B1/94] Length = 245 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228 >gi|254485770|ref|ZP_05098975.1| two component transcriptional regulator, LuxR family [Roseobacter sp. GAI101] gi|214042639|gb|EEB83277.1| two component transcriptional regulator, LuxR family [Roseobacter sp. GAI101] Length = 204 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +L+ RE++ L ++EGK + EIA L IS TV ++ ++ RK R+ A Sbjct: 143 KLSSRELQVLKGLTEGKANKEIARDLDISEPTVKLHMKTLYRKVGAANRTQA 194 >gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 36/58 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + + RE+E L + ++G S EIA + ++++TV+ ++ +I++K + + AIA A Sbjct: 179 EISFSHRELEVLRYTADGMISSEIASTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKA 236 >gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L W+S G ++ EIA L ++ TV N++++++ K R+ A A Sbjct: 160 LSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVLDRTQAALMA 214 >gi|159037162|ref|YP_001536415.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915997|gb|ABV97424.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 212 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L +++EG T+ EIA + ++ TV NY++S++ K + R+ A A R Sbjct: 150 LTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATR 206 >gi|325833702|ref|ZP_08166117.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|325485242|gb|EGC87712.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 462 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L +++EG + I+ +L IS NTV +I +I RK +R Sbjct: 406 LTAREQEILAYLAEGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453 >gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L RE+E L ++EG+++ EIA L ++++T+ Y+ I K +R+ AI A Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWYLKQIYSKLNAHSRTQAIVCA 195 >gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1065 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA L IS +TV ++ ++ K R+ AIA A Sbjct: 1005 LTRREQEVLCLLAAGASNQEIAQTLVISLDTVKKHVGRLLDKLGATNRTQAIAQA 1059 >gi|296104780|ref|YP_003614926.1| two-component system, NarL family, response regulator EvgA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059239|gb|ADF63977.1| two-component system, NarL family, response regulator EvgA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 209 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + RE+ L ++ +GK++ EIA L +S T++ Y A +M+K+ Sbjct: 149 SDREIAVLNYLKQGKSNKEIADRLALSNKTISTYKARMMKKSG 191 >gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 221 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D H K LT RE E ++ GK++ EIA L ++ TV +++ I+ K + R A Sbjct: 152 DEHAQKLERLTAREREVFELVARGKSNAEIAGELFMAGPTVKTHVSHILTKLEVRDRIHA 211 Query: 237 IAYAVRNNIV 246 + +A +V Sbjct: 212 VIFAYEAGVV 221 >gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] Length = 242 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LTW + GK+S + A I+ I+ T + + K R+ A+ A+++ Sbjct: 180 LTQREQEVLTWAALGKSSRDTAEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKF 239 Query: 246 V 246 + Sbjct: 240 I 240 >gi|218258057|ref|ZP_03474484.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii DSM 18315] gi|218225776|gb|EEC98426.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii DSM 18315] Length = 202 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 135 LSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKL 194 Query: 246 V 246 V Sbjct: 195 V 195 >gi|254472864|ref|ZP_05086263.1| hypothetical protein PJE062_3930 [Pseudovibrio sp. JE062] gi|211958328|gb|EEA93529.1| hypothetical protein PJE062_3930 [Pseudovibrio sp. JE062] Length = 381 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 28/42 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT +E E + ++ G ++ + A +LGIS NT N+IA++ R+ Sbjct: 316 LTPKETEVVKALTNGASTRDAADLLGISYNTARNHIANVSRR 357 >gi|85858634|ref|YP_460836.1| response regulator [Syntrophus aciditrophicus SB] gi|85721725|gb|ABC76668.1| response regulator with a HTH DNA-binding domain [Syntrophus aciditrophicus SB] Length = 210 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + ++ GKT EIA L +S T++ Y + I+ K K + YAV+N++ Sbjct: 149 LSDREYQVMLMLASGKTVTEIAEELCLSVKTISTYRSRILEKMNMKKNAELTLYAVQNHL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|78062243|ref|YP_372151.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77970128|gb|ABB11507.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 913 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%) Query: 156 RDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 RDRL I G A YQ + + +D L+ RE + + I+ G+++ EIA L Sbjct: 814 RDRLAYIERLLDGCRAQYQQDAQPARAAQ--RDM-LSVRERDIVELIAHGQSNKEIARTL 870 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GI+ TV ++I S+ K R+ A+A A Sbjct: 871 GIAPETVKSHIKSLFMKLEVDKRARAVAVA 900 >gi|312889298|ref|ZP_07748852.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311298175|gb|EFQ75290.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 186 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F+ T RE++ +++G T EIA L IS +TV+++ I +K+ +R Sbjct: 124 FQFTAREIDVCLLLAKGMTYTEIAETLHISNSTVDSHTQKIYKKSGVNSR 173 >gi|261218196|ref|ZP_05932477.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261320956|ref|ZP_05960153.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|260923285|gb|EEX89853.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293646|gb|EEX97142.1| two component transcriptional regulator [Brucella ceti M644/93/1] Length = 254 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237 >gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G +DEIA L +S TV ++ M K + R+ + A + Sbjct: 161 LTGREREVLVQVAGGHPNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010] gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010] Length = 212 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT RE E L ++EG + IA LGIS TV +I +I+RK +R Sbjct: 151 DAGLTDRENEILDCLAEGMNNKNIARKLGISDTTVKVHIKNILRKLNLTSR 201 >gi|170695914|ref|ZP_02887054.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170139212|gb|EDT07400.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 181 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 26/46 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRALAISPRTVDVYRARLMRKYDT 168 >gi|225155470|ref|ZP_03723961.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224803771|gb|EEG22003.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 225 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG + ++A LGIS TV + +M K +G +A+ + Sbjct: 156 LTTREAEVLQLVAEGAANKQVAAELGISIKTVEKHRQQLMNKLDIHDTAGLTRHAIATGV 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 218 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GREV+ L ++ G ++ +A L IS TV ++ I K R+ AIA A + I Sbjct: 155 LSGREVQLLELLATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQRRI 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|108801402|ref|YP_641599.1| ATP-dependent transcription regulator LuxR [Mycobacterium sp. MCS] gi|119870555|ref|YP_940507.1| putative GAF sensor protein [Mycobacterium sp. KMS] gi|108771821|gb|ABG10543.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Mycobacterium sp. MCS] gi|119696644|gb|ABL93717.1| putative GAF sensor protein [Mycobacterium sp. KMS] Length = 285 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+GRE++ LT ++ G T+ E A L + TV +Y+ S K T+TR +++ A Sbjct: 224 LSGRELDVLTQVAMGCTNAEAAQRLSLRPETVKSYLRSASAKLGTRTRHESVSRA 278 >gi|108760284|ref|YP_633423.1| LuxR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108464164|gb|ABF89349.1| transcriptional regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 292 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L RE + L + +G +IA LGISR TVN Y ++ R+ ++R+ IA Sbjct: 200 LAPRERQTLELLLQGLGDKQIAARLGISRFTVNQYTKTLYRRFGVQSRAALIA 252 >gi|300698182|ref|YP_003748843.1| LuxR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074906|emb|CBJ54475.1| putative transcription regulator protein LuxR [Ralstonia solanacearum CFBP2957] Length = 218 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE + ++ G IA LGISR+TV ++ + RKT T ++ Sbjct: 155 FHLTRREADVADLLARGADPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 204 >gi|212636693|ref|YP_002313218.1| regulatory protein LuxR:response regulator receiver [Shewanella piezotolerans WP3] gi|212558177|gb|ACJ30631.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella piezotolerans WP3] Length = 209 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE+E L ++EG+++ +A L IS TV ++ +++RK K+R+ Sbjct: 152 LTPRELEILQHLAEGQSNRVVAEQLHISEGTVKVHVKNLLRKANAKSRT 200 >gi|167622780|ref|YP_001673074.1| LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352802|gb|ABZ75415.1| transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 317 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE + + I +G T +IA L +S +TV+N++ I K TRS ++ A Sbjct: 257 ELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKLGINTRSELVSIA 312 >gi|159044888|ref|YP_001533682.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912648|gb|ABV94081.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 220 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++ GK++ E+A L IS TV + +I RK + +G YA+ + + Sbjct: 153 LTSREQTILLQLASGKSNKEVAATLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|114706302|ref|ZP_01439204.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506] gi|114538163|gb|EAU41285.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506] Length = 205 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE E L+ ++ G T+ +IA GIS+NTV Y+ ++ K + R+ A+A Sbjct: 145 KLTVRERELLSMLALGWTNVQIAARTGISQNTVKYYLKNLYEKLDVQNRAMAVA 198 >gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 237 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE E L ++ G T EIA L IS NTV +I +I K A +RS A+ Sbjct: 174 LSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVNSRSEAV 225 >gi|330959979|gb|EGH60239.1| LuxR response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 264 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+V+ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 193 KLSPRQVDVAKLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 249 >gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 38/67 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ ELT RE E L +++G ++ EIA L ++ +TV +++ I+ K + R+ A + Sbjct: 161 QGRLAELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLRDRTQAAVF 220 Query: 240 AVRNNIV 246 A +V Sbjct: 221 AYEARLV 227 >gi|258622087|ref|ZP_05717113.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573] gi|258585411|gb|EEW10134.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573] Length = 282 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D +LT RE E L + GK IA ++GIS TV Y A + K ++ I A Sbjct: 196 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 255 Query: 241 V 241 + Sbjct: 256 L 256 >gi|284032031|ref|YP_003381962.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811324|gb|ADB33163.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 225 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LTGRE E L + G+T+ IA +L IS TV ++ I K ++R+ A+ Sbjct: 162 LTGREQEVLKLLGAGRTNAGIAGVLVISEATVRTHVYRIQTKLGLQSRTEAV 213 >gi|259907792|ref|YP_002648148.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae Ep1/96] gi|224963414|emb|CAX54902.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae Ep1/96] gi|283477661|emb|CAY73577.1| Nitrate/nitrite response regulator protein homolog [Erwinia pyrifoliae DSM 12163] gi|310768295|gb|ADP13245.1| Nitrate/nitrite response regulator protein NarP [Erwinia sp. Ejp617] Length = 209 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE E L ++ G T+ ++A L IS TV +I +++RK +TR A Sbjct: 150 LTVREQEVLKEVASGLTNKQVAENLAISEQTVKVHIRNVLRKLNVRTRVAA 200 >gi|224539069|ref|ZP_03679608.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus DSM 14838] gi|224519314|gb|EEF88419.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus DSM 14838] Length = 250 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L I++GK S +IA L IS NTVN + +I+ K Sbjct: 190 LSDREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEK 231 >gi|157144856|ref|YP_001452175.1| transcriptional regulator NarP [Citrobacter koseri ATCC BAA-895] gi|157082061|gb|ABV11739.1| hypothetical protein CKO_00584 [Citrobacter koseri ATCC BAA-895] Length = 215 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|126437385|ref|YP_001073076.1| putative GAF sensor protein [Mycobacterium sp. JLS] gi|126237185|gb|ABO00586.1| putative GAF sensor protein [Mycobacterium sp. JLS] Length = 285 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+GRE++ LT ++ G T+ E A L + TV +Y+ S K T+TR +++ A Sbjct: 224 LSGRELDVLTQVAMGCTNAEAAQRLSLRPETVKSYLRSASAKLGTRTRHESVSRA 278 >gi|104782132|ref|YP_608630.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95111119|emb|CAK15839.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 204 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%) Query: 161 EIG--LLAAYQANMFKSYD----VHW-GKDFEL---TGREVECLTWISEGKTSDEIAVIL 210 EIG LLA + + Y +H G D EL T R+ + L I++GKT+ EIA L Sbjct: 112 EIGAALLAVREGEVVVRYAPSGLLHQEGADSELEQLTHRQHDVLRLIAQGKTNKEIAREL 171 Query: 211 GISRNTVNNYIASIMRKTATKTRSGA 236 IS TV +++S+++ TR+ A Sbjct: 172 DISPFTVRIHVSSLLKTLNVPTRTAA 197 >gi|222109041|ref|YP_002551307.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] gi|4883686|gb|AAD31600.1| TraR [Agrobacterium radiobacter K84] gi|221727963|gb|ACM31013.1| conjugal transfer regulatory protein [Agrobacterium radiobacter K84] Length = 234 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ GKT +EIA + G+ N+V + M++ ++++ A A+R + Sbjct: 174 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDIRSKAHLTALAIRRKL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|317126429|ref|YP_004100541.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590517|gb|ADU49814.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 225 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 E L I+EG T+ ++ L ++ TV NY++S++ K +TR+ A YA Sbjct: 163 ERRILDLIAEGLTNRQVGDRLHLAEKTVKNYVSSVLSKMGMETRTQAAVYAA 214 >gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 230 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++++G ++ E+A +S TV ++A I+ K + R+ A+ A + Sbjct: 161 LTPRELEVLEFLAQGLSNAELAARFQLSEATVKTHVARILAKLQVRDRAQAVIVAYETGL 220 Query: 246 V 246 + Sbjct: 221 I 221 >gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E + +EGK++ EIA IL +S TV +I M K + R+ + A + Sbjct: 158 ELTDREREVMGLAAEGKSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTG 217 Query: 245 IV 246 + Sbjct: 218 LA 219 >gi|302529224|ref|ZP_07281566.1| two component system response regulator [Streptomyces sp. AA4] gi|302438119|gb|EFL09935.1| two component system response regulator [Streptomyces sp. AA4] Length = 213 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E + +G ++ EIA LG+S TV ++ IM KT R+ Sbjct: 153 LTPREREVAVAVGQGSSNAEIARALGLSEATVKVHLGRIMAKTEAANRT 201 >gi|229178244|ref|ZP_04305615.1| Response regulator [Bacillus cereus 172560W] gi|228605374|gb|EEK62824.1| Response regulator [Bacillus cereus 172560W] Length = 212 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L ++N+ ++ + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMENKEEECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|332526411|ref|ZP_08402533.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332110543|gb|EGJ10866.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 211 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE++ L I+ GK +IA L +S TV+ Y A ++ K S YA+RN Sbjct: 148 KLSDRELQTLVMIASGKRLADIAEELMLSPKTVSVYRARVLEKLQLANNSELTVYAIRNG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|301065076|ref|ZP_07205418.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] gi|300440797|gb|EFK05220.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] Length = 315 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F LT RE+E + + EGK++ EIA +L +S T++ + +I K K++ Sbjct: 254 FNLTPREIEIASLVKEGKSTKEIAQLLALSPRTIDLHRLNIREKLGLKSKK 304 >gi|293374136|ref|ZP_06620470.1| transcriptional regulator, LuxR family [Turicibacter sanguinis PC909] gi|325837421|ref|ZP_08166403.1| spore germination protein GerE [Turicibacter sp. HGF1] gi|292647239|gb|EFF65215.1| transcriptional regulator, LuxR family [Turicibacter sanguinis PC909] gi|325490953|gb|EGC93251.1| spore germination protein GerE [Turicibacter sp. HGF1] Length = 70 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E + T+ EIA L IS TV N+I++++ K K RS AI Sbjct: 8 LTKREQEIFNLLVRNMTTSEIAEELKISEKTVRNHISNVILKLNVKGRSQAI 59 >gi|260756053|ref|ZP_05868401.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759277|ref|ZP_05871625.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760999|ref|ZP_05873342.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|261316853|ref|ZP_05956050.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261751522|ref|ZP_05995231.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|265987924|ref|ZP_06100481.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992398|ref|ZP_06104955.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994141|ref|ZP_06106698.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|260669595|gb|EEX56535.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671431|gb|EEX58252.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676161|gb|EEX62982.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|261296076|gb|EEX99572.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261741275|gb|EEY29201.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262765122|gb|EEZ11043.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003464|gb|EEZ15757.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264660121|gb|EEZ30382.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 254 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237 >gi|225626731|ref|ZP_03784770.1| Monoamine regulon transcriptional regulator [Brucella ceti str. Cudo] gi|237814663|ref|ZP_04593661.1| Monoamine regulon transcriptional regulator [Brucella abortus str. 2308 A] gi|225618388|gb|EEH15431.1| Monoamine regulon transcriptional regulator [Brucella ceti str. Cudo] gi|237789500|gb|EEP63710.1| Monoamine regulon transcriptional regulator [Brucella abortus str. 2308 A] Length = 257 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 192 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 240 >gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 265 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL +EG ++ EI+ I+G S TV ++ + +K + R+ A+ A Sbjct: 192 LTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRAT 247 >gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 226 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + Sbjct: 161 LTGREREVLVQVAAGLSNDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|237507456|ref|ZP_04520171.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|254190212|ref|ZP_04896721.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254193496|ref|ZP_04899930.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254265145|ref|ZP_04956010.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300471|ref|ZP_04967917.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157810179|gb|EDO87349.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937889|gb|EDO93559.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169650249|gb|EDS82942.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|234999661|gb|EEP49085.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|254216147|gb|EET05532.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 261 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 149 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 208 Query: 234 SGAIAYAV 241 + I A Sbjct: 209 NELIDLAA 216 >gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125] gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125] Length = 217 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L +++G+++ EIA L IS TV ++++I K R+ A +A++ Sbjct: 151 DLTNREKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKYG 210 Query: 245 I 245 I Sbjct: 211 I 211 >gi|323137329|ref|ZP_08072407.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322397316|gb|EFX99839.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 220 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE L ++ GK + EIA +G++ TV N++++I+ K ++R+ Sbjct: 162 LTDREKAVLAHVAAGKGNREIAREMGLAEGTVKNHVSTILAKLHLRSRT 210 >gi|284043113|ref|YP_003393453.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947334|gb|ADB50078.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 227 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE E L I+ G E+A+ LGIS TV ++++++RK R Sbjct: 160 QLTQREREVLRHIARGYLYKEVALRLGISAKTVEAHVSAVLRKLQLSNR 208 >gi|259418337|ref|ZP_05742255.1| nitrate/nitrite regulatory protein NarP [Silicibacter sp. TrichCH4B] gi|259345732|gb|EEW57576.1| nitrate/nitrite regulatory protein NarP [Silicibacter sp. TrichCH4B] Length = 224 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + G + EIA +L + TV + + SIM+KT R+ AV+ + Sbjct: 154 LTQRETQVLGQLLRGAPNKEIARVLSVPLTTVKSDVKSIMQKTGAANRTALAVSAVQAGL 213 Query: 246 V 246 + Sbjct: 214 M 214 >gi|317054006|ref|YP_004118031.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952001|gb|ADU71475.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 239 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 23/219 (10%) Query: 31 DLLARMIPL--DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 D L MIP+ C W ++ + + +V + L +L K+ ++ + P Sbjct: 19 DFLKIMIPIWNRCDEPWGVKDES-SRFVYVNDSFLKLLNLPLNYKIAGMLHENMP----- 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 SE K+ Q +L + T P G + S FD + LF Sbjct: 73 ----SETAKFARQFQENDKLVASTLKRVTSIETHPFGESQKISSYLFDK-------IPLF 121 Query: 149 PKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 K + R +EI + + N + LT RE + + G+ + Sbjct: 122 NKDNEYIGNMFHGRKFEILDINLFYTNKLSGAVTFYSPSALLTDREWDVVFLKLRGENNK 181 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EI+ IL ISR TV I+SI K + S + +RN Sbjct: 182 EISRILKISRRTVEKIISSIYDKCEVSSWSALRGFLIRN 220 >gi|254705374|ref|ZP_05167202.1| LuxR family transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 135 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 70 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 118 >gi|241766322|ref|ZP_04764211.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241363555|gb|EER58994.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 210 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K + + S YA++N Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKALSLSVKTVSTYRTRLMEKMSLSSNSDLTYYALKNR 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 201 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++G S+EIA L +S TV N+++ IM KT + R A+ A Sbjct: 141 LTRRELDVLRLAAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIA 195 >gi|229174002|ref|ZP_04301538.1| Response regulator [Bacillus cereus MM3] gi|228609334|gb|EEK66620.1| Response regulator [Bacillus cereus MM3] Length = 566 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L +S G IA L +S T+ NY +++ K R AI A Sbjct: 504 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKKARTE 563 Query: 244 NIV 246 NI+ Sbjct: 564 NIL 566 >gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus] gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] Length = 217 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM+K K++ + YA++ + Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKKKL 214 Query: 246 V 246 + Sbjct: 215 L 215 >gi|317489390|ref|ZP_07947902.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325832371|ref|ZP_08165345.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|316911497|gb|EFV33094.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325486007|gb|EGC88462.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 488 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A Q + ++ H + LT RE E L + +G+T+ I+ L +S NTV +I SI Sbjct: 406 AEQQGDALEARCAHVAEAHGLTPRESEILVHLGQGRTARAISEKLVVSENTVKYHIKSIY 465 Query: 226 RKTATKTR 233 +K +R Sbjct: 466 QKLDVHSR 473 >gi|256379381|ref|YP_003103041.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923684|gb|ACU39195.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 213 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ RE E L I++G + EIA L S+ TV + + I + + R+ A+AYA+R + Sbjct: 153 MSNRETEVLRLIADGYETREIAERLCYSQRTVKSILHDITNRFGLRNRAHAVAYALREGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|146308469|ref|YP_001188934.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp] gi|145576670|gb|ABP86202.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp] Length = 221 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ELT RE + L I G ++ +IA LGIS TV Y+ S++RK +R Sbjct: 19 ELTEREGQTLALIGAGLSNKQIARELGISDGTVKIYVRSLLRKFRLSSR 67 >gi|53722159|ref|YP_111144.1| LuxR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76818644|ref|YP_335251.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|52212573|emb|CAH38599.1| putative LuxR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76583117|gb|ABA52591.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] Length = 267 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 155 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 214 Query: 234 SGAIAYAV 241 + I A Sbjct: 215 NELIDLAA 222 >gi|220924070|ref|YP_002499372.1| two component LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219948677|gb|ACL59069.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 251 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT ++V L I +GK + +IA LG+ +TV +++ I+RK +R+ Sbjct: 181 ELTPQQVRVLLMIRQGKLNKQIAHELGVGDSTVKAHVSEILRKLGVISRT 230 >gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 218 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G ++ +IA L +S TV N++ + RK R YA+ + + Sbjct: 157 LTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQLANRVELTRYAIEHGL 216 >gi|121595802|ref|YP_987698.1| two component LuxR family transcriptional regulator [Acidovorax sp. JS42] gi|120607882|gb|ABM43622.1| two component transcriptional regulator, LuxR family [Acidovorax sp. JS42] Length = 239 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 177 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNK 236 Query: 245 IV 246 ++ Sbjct: 237 LI 238 >gi|119946176|ref|YP_943856.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] gi|119864780|gb|ABM04257.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] Length = 216 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+ L +S+G+ + +IAV L IS TV ++++SI++K R Sbjct: 153 LTRRELMVLKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNR 200 >gi|10955045|ref|NP_059701.1| hypothetical protein pTi_029 [Agrobacterium tumefaciens] gi|6094514|sp|P33905|TRAR_AGRTU RecName: Full=Transcriptional activator protein traR gi|3377775|gb|AAC28121.1| traR [Agrobacterium tumefaciens] gi|81176493|gb|ABB59515.1| TraR [Agrobacterium tumefaciens] Length = 234 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ GKT +EIA + G+ N+V + M++ ++++ A A+R + Sbjct: 174 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 197 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE + L +EG T EIA + +S TV NY+++ + K R AI A Sbjct: 134 DCPLTQRERDALKLAAEGATVAEIAAAIHLSEGTVRNYLSNAITKLGAGNRITAIRVA 191 >gi|269961289|ref|ZP_06175655.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833955|gb|EEZ88048.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 214 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G +++++A L +S T+ +++ I +K + K R AIA+A +N Sbjct: 153 DLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211 >gi|265983374|ref|ZP_06096109.1| two component transcriptional regulator [Brucella sp. 83/13] gi|264661966|gb|EEZ32227.1| two component transcriptional regulator [Brucella sp. 83/13] Length = 254 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 189 LTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237 >gi|256826810|ref|YP_003150769.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582953|gb|ACU94087.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 470 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G++ LT REVE L + G++ + IA L IS NTV ++ I RK +R A+ Sbjct: 409 GRERGLTEREVEVLELLCRGRSKNYIADTLFISENTVRSHARHIYRKLDVHSRQEAM 465 >gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 227 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G T+ EIA L + TV +++ ++ K + R A+ +A Sbjct: 158 ELTDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLKLGLRDRVQAVVFAYECG 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|148556258|ref|YP_001263840.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148501448|gb|ABQ69702.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 373 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 26/49 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT E ++EG E+A LGIS NTV ++ SI KT K +S Sbjct: 307 LTQGEAAVAAHLAEGLAPAEVAARLGISANTVRAHLRSIFGKTGVKRQS 355 >gi|126444037|ref|YP_001062591.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126223528|gb|ABN87033.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] Length = 254 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201 Query: 234 SGAIAYAV 241 + I A Sbjct: 202 NELIDLAA 209 >gi|299066579|emb|CBJ37769.1| putative transcriptional regulator; LuxR family [Ralstonia solanacearum CMR15] Length = 181 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H LT RE + + EGKTS +I L IS TV Y A +M+K A T Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAAST 170 >gi|296446535|ref|ZP_06888477.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296255889|gb|EFH02974.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 209 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++ L +++GK E+A + +S T+ N A + RK ++RS I AV N + Sbjct: 145 LNERELDILRHLADGKDMTEMAFAMKVSYKTIANSCALLKRKLGARSRSDLIRIAVENRL 204 >gi|296270643|ref|YP_003653275.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093430|gb|ADG89382.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 74 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE E + I+ G ++ EIA L +S TV N++ I K ++R+ AI Sbjct: 11 LSKRETEVMELIASGHSNGEIARRLFLSEKTVKNHVNRIYAKLGVRSRTSAIG 63 >gi|307727191|ref|YP_003910404.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587716|gb|ADN61113.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 210 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +F++Y L+ RE + L ++ GK+ +EIA +S T++ + +M+K Sbjct: 134 VFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIAEAFALSAKTISTHKMRLMQKLGLA 193 Query: 232 TRSGAIAYAVRNNIV 246 + I YA+R+ +V Sbjct: 194 NNADLIRYAIRHGLV 208 >gi|320009389|gb|ADW04239.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L +S+G + +IA L IS TV ++ I K TR+GA++ A Sbjct: 149 LTERELDILGQLSQGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVSVA 203 >gi|255019078|ref|ZP_05291204.1| two-component response regulator [Listeria monocytogenes FSL F2-515] Length = 64 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 2 LLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 54 >gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 204 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE + L +EG + EIA L +S TV N++ +I+ K ++R+ A+ A Sbjct: 141 DNPLTPRESDVLRLTAEGAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIA 198 >gi|254443862|ref|ZP_05057338.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258170|gb|EDY82478.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + +++ G T+ EIA LG+S TV ++ ++I +K +G +AVR + Sbjct: 158 LSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKLKIFDIAGVTLFAVRTGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|127511776|ref|YP_001092973.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126637071|gb|ABO22714.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 209 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%) Query: 176 YDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 Y++ G D + LT RE++ L ++EGK++ I+ L IS TV ++ +++RK Sbjct: 137 YELKDGADEQAWIDNLTPRELQILEQLAEGKSNRVISEQLHISEGTVKVHVKNLLRKANA 196 Query: 231 KTRS 234 K+R+ Sbjct: 197 KSRT 200 >gi|111026189|ref|YP_708472.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|40787202|gb|AAR90120.1| response regulator [Rhodococcus sp. DK17] gi|110825032|gb|ABH00314.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 209 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE++ L I+ G T+ EIA L +S TV ++ ASI RK +TR+ Sbjct: 148 LSSRELDVLKMIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196 >gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122] gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122] gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp. aureus CGS00] Length = 217 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM K K++ + YA++ + Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 214 Query: 246 V 246 + Sbjct: 215 L 215 >gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. ND132] gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans ND132] Length = 226 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++EG T+ +A L IS TV N+ ++M+K K+ + YA R + Sbjct: 159 LTPREQEVMRMLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVELVRYAARLGL 218 Query: 246 V 246 + Sbjct: 219 I 219 >gi|317481525|ref|ZP_07940584.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|316902311|gb|EFV24206.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 99 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 28/45 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 D +L+ RE E L I +G S EIA LG+S TVNN+ +I+ K Sbjct: 37 DKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSK 81 >gi|302039113|ref|YP_003799435.1| putative sensory transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] gi|300607177|emb|CBK43510.1| putative Sensory transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 235 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L RE E L ++ GK+ +IA +L IS TV N+I I+ K +R A+A A Sbjct: 169 LPLGEREREILRGLAAGKSGKDIADLLCISPVTVRNHIQHILEKLGAHSRLQALAIA 225 >gi|282877369|ref|ZP_06286192.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC 35310] gi|281300421|gb|EFA92767.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC 35310] Length = 203 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I +G + EIA L I TV + +IM K K+ S YAV + Sbjct: 138 LSDREIEVLSLIVQGYINKEIADQLNIGMTTVITHRKNIMDKLGVKSVSALTIYAVMHGY 197 Query: 246 V 246 V Sbjct: 198 V 198 >gi|302528623|ref|ZP_07280965.1| predicted protein [Streptomyces sp. AA4] gi|302437518|gb|EFL09334.1| predicted protein [Streptomyces sp. AA4] Length = 324 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE + + + +G + +IA L +S +TVN ++ ++ RKTA R +A Sbjct: 266 YRLTPRERQVVQHLCDGAAAKQIARRLDLSVHTVNEHLKAVFRKTAASGRDELVA 320 >gi|167621873|ref|YP_001676658.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167351614|gb|ABZ74344.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 74 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R E L S+G T+ +I LG+S TVN Y++ ++ + R+ A+ AV+ Sbjct: 6 LTPRLREVLILASDGLTAIQIGDALGLSYRTVNQYLSDAYKRLGARNRTQAVTIAVQ 62 >gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 215 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG T+ EIA L +S TV + +I +K + I YA+R + Sbjct: 153 LTAREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLNINRAAELIKYAIREGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|15889313|ref|NP_354994.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157150|gb|AAK87779.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 231 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 KD LT E +CL ++EG +A LG+S + +N A I+ K + R A+A A Sbjct: 164 AKDIALTDTERKCLELMAEGYAPVRLARALGLSGSDLNTLEAKIIGKFSASNRFQAVAKA 223 Query: 241 V 241 V Sbjct: 224 V 224 >gi|17546288|ref|NP_519690.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428585|emb|CAD15271.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 181 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H LT RE + + EGKTS +I L IS TV Y A +M+K A T Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAAST 170 >gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614] gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614] Length = 215 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L +++G ++ EIA L + TV ++A ++ K + R A+ A Sbjct: 154 DLTSRERDVLVLLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRDRLQAVVSAFNAG 213 Query: 245 IV 246 +V Sbjct: 214 VV 215 >gi|306844463|ref|ZP_07477053.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1] gi|306275276|gb|EFM57026.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1] Length = 245 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228 >gi|298249276|ref|ZP_06973080.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547280|gb|EFH81147.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1035 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ +E + L + G+T E+A L +S NT+ + ++SI RK R+ A+A R N+ Sbjct: 975 LSRQEQQVLRLLMVGQTYAEMAQTLVVSLNTIKSQVSSIYRKLGVSRRTEAMAVTTRLNL 1034 Query: 246 V 246 + Sbjct: 1035 L 1035 >gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] Length = 240 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180 G D R LT AR + M+ +L+D EI L AA N+F + + Sbjct: 76 GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135 Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 196 RVAATIMYLEN 206 >gi|261221423|ref|ZP_05935704.1| two component transcriptional regulator [Brucella ceti B1/94] gi|265997385|ref|ZP_06109942.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|260920007|gb|EEX86660.1| two component transcriptional regulator [Brucella ceti B1/94] gi|262551853|gb|EEZ07843.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 254 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237 >gi|226312417|ref|YP_002772311.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095365|dbj|BAH43807.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 214 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E + I G ++ E+A L IS TV N+ +IM+K ++ I YA++N Sbjct: 150 LTLREKELVRLIVLGYSNKEMADKLLISVKTVENHKTNIMQKLGLDSKHQLIQYAIKN 207 >gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] Length = 209 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L +++EG + IA LG+S TV +I +I R R+ A A + + Sbjct: 149 LTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|83748291|ref|ZP_00945316.1| Hypothetical Protein RRSL_02593 [Ralstonia solanacearum UW551] gi|207724045|ref|YP_002254443.1| hypothetical protein RSMK01503 [Ralstonia solanacearum MolK2] gi|207742938|ref|YP_002259330.1| hypothetical protein RSIPO_01113 [Ralstonia solanacearum IPO1609] gi|83725023|gb|EAP72176.1| Hypothetical Protein RRSL_02593 [Ralstonia solanacearum UW551] gi|206589253|emb|CAQ36215.1| hypothetical protein RSMK01503 [Ralstonia solanacearum MolK2] gi|206594333|emb|CAQ61260.1| hypothetical protein RSIPO_01113 [Ralstonia solanacearum IPO1609] Length = 181 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H LT RE + + EGKTS +I L IS TV Y A +M+K A T Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAANT 170 >gi|315654297|ref|ZP_07907205.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491332|gb|EFU80949.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] Length = 201 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D LT RE+E L +G EIA + +S TV NY++S + KT T +GA Sbjct: 138 DNPLTEREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAIGKTHADTSAGA 191 >gi|306842522|ref|ZP_07475173.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2] gi|306287378|gb|EFM58858.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2] Length = 245 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228 >gi|291008910|ref|ZP_06566883.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 199 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE++ L +SEG +IA L S TV N + + R+ A++YA+R+ + Sbjct: 139 VTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQFTSRFNLHNRAHAVSYAIRSGL 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 229 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I+ G ++ EIA L +++ TV ++A ++ K + R A+ A Sbjct: 159 ELTERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVVLAYEAG 218 Query: 245 IV 246 +V Sbjct: 219 VV 220 >gi|260567168|ref|ZP_05837638.1| LOW QUALITY PROTEIN: bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|261756088|ref|ZP_05999797.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|260156686|gb|EEW91766.1| LOW QUALITY PROTEIN: bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|261745841|gb|EEY33767.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 222 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 157 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 205 >gi|256392339|ref|YP_003113903.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358565|gb|ACU72062.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G EL+G+E + L ++ G+ +IA+ +GIS TV +Y+ I K + R+ Sbjct: 151 QAGPRLELSGQEKQVLRLVAAGERDRDIAMAMGISVRTVRSYLDRIRDKIGARRRA 206 >gi|255692220|ref|ZP_05415895.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] gi|260622084|gb|EEX44955.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] Length = 219 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E L I+ GKT+ EIA +S +T+N++ +I RK A YA+R I Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211 Query: 246 V 246 V Sbjct: 212 V 212 >gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 158 DLTERETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 235 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA + I TV +++ I+ K + R A+ YA + + Sbjct: 169 LTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAKLDLRDRVQAVVYAYESGL 228 Query: 246 V 246 V Sbjct: 229 V 229 >gi|156975940|ref|YP_001446847.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116] gi|156527534|gb|ABU72620.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116] Length = 214 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G +++++A L +S T+ +++ I +K + K R AIA+A +N Sbjct: 153 DLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211 >gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 210 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A Sbjct: 149 ELTERELDVLQEVARGLSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAA 200 >gi|330958946|gb|EGH59206.1| LuxR response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 208 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K TKT I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTKTLVELIEMAKRNALV 208 >gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 238 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G ++ EIA L + TV ++++ ++ K + R A+ +A Sbjct: 173 DLTPREREVLVLVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAVVFAYEQG 232 Query: 245 IV 246 +V Sbjct: 233 VV 234 >gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 233 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L +++G ++ EIA LG+S +TV +++A + K R+ A++ A Sbjct: 172 LTPRESEVLPLLAQGLSNKEIARELGVSPDTVKDHLARMYGKLDACDRTEAVSRA 226 >gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L ++EG ++ EIA +S TV ++ ++ K + R A+ A Sbjct: 158 ELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGLRDRVQAVVLAYETG 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L I+ G T+ IA L +S TV N++++I+ K R+ A AV + + Sbjct: 153 LTERELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDVADRTQAALLAVEHGL 212 >gi|56459266|ref|YP_154547.1| response regulator [Idiomarina loihiensis L2TR] gi|56178276|gb|AAV80998.1| Response regulator, LuxR family (CheY-HTH) [Idiomarina loihiensis L2TR] Length = 214 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT +E++ + ++ G + EIA L IS +TV +++SI RKT + R Sbjct: 154 LTPQELKVIELVATGARNKEIAEHLNISAHTVKTHLSSIFRKTGARNR 201 >gi|312141833|ref|YP_004009169.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311891172|emb|CBH50491.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 866 Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE L ++ G ++ EIA L +S NTV + + ++ RK +R A+ A R Sbjct: 804 ELTERERAVLAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTG 863 Query: 245 IV 246 ++ Sbjct: 864 LI 865 >gi|300703871|ref|YP_003745473.1| transcriptional regulator; luxr family [Ralstonia solanacearum CFBP2957] gi|299071534|emb|CBJ42858.1| putative transcriptional regulator; LuxR family [Ralstonia solanacearum CFBP2957] Length = 181 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H LT RE + + EGKTS +I L IS TV Y A +M+K A T Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAANT 170 >gi|319762911|ref|YP_004126848.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330824990|ref|YP_004388293.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117472|gb|ADU99960.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329310362|gb|AEB84777.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 208 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +LTGRE + L I G+ + +IA LGIS TV + A+IM K T Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANT 192 >gi|297161006|gb|ADI10718.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 54 Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ +EG + EIA L +S T+ NY+A+I RKT + R AI Sbjct: 2 LSLAAEGASIAEIARSLHLSNGTIRNYMAAITRKTGARNRVDAI 45 >gi|325672904|ref|ZP_08152598.1| exopolyphosphatase [Rhodococcus equi ATCC 33707] gi|325556157|gb|EGD25825.1| exopolyphosphatase [Rhodococcus equi ATCC 33707] Length = 854 Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE L ++ G ++ EIA L +S NTV + + ++ RK +R A+ A R Sbjct: 792 ELTERERAVLAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTG 851 Query: 245 IV 246 ++ Sbjct: 852 LI 853 >gi|282863886|ref|ZP_06272944.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561587|gb|EFB67131.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E + L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 156 LTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLAKLGMERRSQAAAYVAR 212 >gi|284033583|ref|YP_003383514.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812876|gb|ADB34715.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 225 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G ++ EIA + +S TV +I I+ KT + R + Sbjct: 160 DLTAREREVLVEVARGLSNTEIARLFTLSEATVKTHIGRILAKTGLRDRVALVVLGYETG 219 Query: 245 IV 246 +V Sbjct: 220 LV 221 >gi|218458210|ref|ZP_03498301.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5] Length = 93 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++CL + G + +I+ L IS + V Y+AS RK T S A+A A Sbjct: 32 HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 87 >gi|163757014|ref|ZP_02164120.1| transcriptional regulator, LuxR family protein [Kordia algicida OT-1] gi|161323018|gb|EDP94361.1| transcriptional regulator, LuxR family protein [Kordia algicida OT-1] Length = 204 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L I++ KTS EIA +L IS++T++ + ++++K + + + YA+ Sbjct: 143 LSRREKEILALIAQRKTSKEIAELLFISKSTIDTHRKNMIQKLQLQGANELLGYAIEQK 201 >gi|219669440|ref|YP_002459875.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539700|gb|ACL21439.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 204 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE + +G T+ EIA L IS NT N+++SIM K +R Sbjct: 147 DLTAREKIIYQMMRKGYTNKEIAKQLSISTNTARNHVSSIMHKLNISSR 195 >gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 231 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+ + Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227 Query: 244 NIV 246 + Sbjct: 228 GLA 230 >gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus N315] gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus Mu3] gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719] gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300] gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948] gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754] gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315] gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719] gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300] gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948] gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754] gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 217 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L I++G + EIA L +S TV + IM K K++ + YA++ + Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 214 Query: 246 V 246 + Sbjct: 215 L 215 >gi|332283747|ref|YP_004415658.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330427700|gb|AEC19034.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 203 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E +I G T E A+ LGIS TV + A +M+K K + ++ V Sbjct: 137 KTTDLTPREQEVSGFIVNGLTCKETAIALGISHRTVEVHRARVMKKLGAKNTAELVSKIV 196 >gi|281425332|ref|ZP_06256245.1| hypothetical protein HMPREF0971_02305 [Prevotella oris F0302] gi|281400625|gb|EFB31456.1| transcriptional regulator, LuxR family domain protein [Prevotella oris F0302] Length = 318 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +L+ RE + + + +G ++ EIA L IS NTV + +I RK + +G YA+ Sbjct: 248 DDQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIV 307 Query: 243 NNIV 246 N++V Sbjct: 308 NHLV 311 >gi|302867778|ref|YP_003836415.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315505818|ref|YP_004084705.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570637|gb|ADL46839.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412437|gb|ADU10554.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 208 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE + L +++G ++ EIA L I TV +I S+M KT + R Sbjct: 150 DLTAREQDVLDLVADGLSNTEIADRLHIGVTTVKTHITSLMTKTGSANR 198 >gi|167638833|ref|ZP_02397108.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|167513297|gb|EDR88668.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] Length = 233 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 128 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 181 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 182 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226 >gi|146318597|ref|YP_001198309.1| DNA-binding response regulator, [Streptococcus suis 05ZYH33] gi|146320797|ref|YP_001200508.1| DNA-binding response regulator [Streptococcus suis 98HAH33] gi|253751721|ref|YP_003024862.1| response regulator protein [Streptococcus suis SC84] gi|145689403|gb|ABP89909.1| DNA-binding response regulator, putative [Streptococcus suis 05ZYH33] gi|145691603|gb|ABP92108.1| DNA-binding response regulator, putative [Streptococcus suis 98HAH33] gi|251816010|emb|CAZ51628.1| response regulator protein [Streptococcus suis SC84] Length = 199 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%) Query: 177 DVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 D+ +GK++ ELT RE E L + G+ +IA L IS T+ N+I +I+ K Sbjct: 120 DISYGKNYFPNQNYFIDELTEREKEILIHLGNGEKRKDIAKSLYISDRTLTNHIQNILEK 179 Query: 228 TATKTRSGAIAYAVR 242 + A+ A + Sbjct: 180 LEVDSTLKAVIKAQK 194 >gi|134097389|ref|YP_001103050.1| regulatory protein [Saccharopolyspora erythraea NRRL 2338] gi|291004621|ref|ZP_06562594.1| regulatory protein [Saccharopolyspora erythraea NRRL 2338] gi|133910012|emb|CAM00124.1| hypothetical regulator protein [Saccharopolyspora erythraea NRRL 2338] Length = 231 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 25/115 (21%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185 D+R+ L FD+ + G L +E A +++ +D+HW E Sbjct: 98 DDRFALLPFDLTHLGRGAYL-------------FENAPAAPHRS----LFDLHWDNAREP 140 Query: 186 -------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+GRE+E + +G T E+A L +S TV +A + ++ T +R Sbjct: 141 ETPAQPGLSGRELEVARLLIDGATDAEVADRLHVSARTVRTAVARLQQRYGTSSR 195 >gi|94971090|ref|YP_593138.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553140|gb|ABF43064.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 213 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT R+ E L ++EG++ E+ IL ++ TV + IM+ + + + YA++ Sbjct: 148 DVPLTERQREVLQLLAEGRSMKEVGAILKLTTRTVAFHKYRIMKAVHARNNAELVRYAIK 207 Query: 243 NNIV 246 +I+ Sbjct: 208 KHIL 211 >gi|317407768|gb|EFV87695.1| hypothetical protein HMPREF0005_03216 [Achromobacter xylosoxidans C54] Length = 223 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+ G T E+A L IS TV + ++MRK + +AYAVR I Sbjct: 163 LTRREQQILALIATGATGTEVARRLYISPLTVRKHRENLMRKLEVHNTAELVAYAVRLGI 222 >gi|300691308|ref|YP_003752303.1| transcriptional regulator; LuxR family [Ralstonia solanacearum PSI07] gi|299078368|emb|CBJ51018.1| putative transcriptional regulator; LuxR family [Ralstonia solanacearum PSI07] Length = 181 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H LT RE + + EGKTS +I L IS TV Y A +M+K A T Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAANT 170 >gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] Length = 592 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY +S K + + A+ A+ Sbjct: 529 YELTTREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASSAYTKLGVRNKEEAVQKALEI 588 Query: 244 NIV 246 ++ Sbjct: 589 GVI 591 >gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM 20213] gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM 20213] Length = 227 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+AV L IS TV +++S++RK R+ +A I Sbjct: 167 LSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 226 Query: 246 V 246 V Sbjct: 227 V 227 >gi|254384074|ref|ZP_04999419.1| luxR family two component system response regulator [Streptomyces sp. Mg1] gi|194342964|gb|EDX23930.1| luxR family two component system response regulator [Streptomyces sp. Mg1] Length = 203 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 29/63 (46%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L +G EIA +S+ TV NY++S K + R Sbjct: 132 AADAISAGDSPLTAREAEVLELAGDGAPIAEIAERASLSQGTVRNYLSSAASKLGAENRH 191 Query: 235 GAI 237 A+ Sbjct: 192 TAV 194 >gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 223 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++ G ++ EIA L I+ TV +I++I+ K + R+ A+ A Sbjct: 159 LTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKA 213 >gi|84501129|ref|ZP_00999364.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84391196|gb|EAQ03614.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 269 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 26/36 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ E L W+ +GKT+ +IA+++G++ TV ++ Sbjct: 204 LTKRQREALQWVGDGKTTADIALLMGLTSATVEKHL 239 >gi|83955493|ref|ZP_00964124.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83840137|gb|EAP79312.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 220 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L +++GK++ E+A L IS TV + +I RK + +G YA+ + + Sbjct: 153 LTEREQTILLQLAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|325279884|ref|YP_004252426.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] gi|324311693|gb|ADY32246.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] Length = 206 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E +T + +G T+ EIA L +S +TV + +I RK + +G YA+ N + Sbjct: 137 LSSREKEIITCVVKGMTNKEIADALYLSAHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 196 Query: 246 V 246 V Sbjct: 197 V 197 >gi|322506326|gb|ADX01780.1| ER transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 58 Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +EGKTS EIA ILG++ TVN ++++ M+K + A AV Sbjct: 10 AEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAV 53 >gi|298247364|ref|ZP_06971169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550023|gb|EFH83889.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1035 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ +E + L + G+T E+A L +S NT+ + ++SI RK R+ A+A R N+ Sbjct: 975 LSRQEQQVLRLLMVGQTYAEMAQTLVVSLNTIKSQVSSIYRKLGVSRRTEAMAVTTRLNL 1034 Query: 246 V 246 + Sbjct: 1035 L 1035 >gi|285016912|ref|YP_003374623.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472130|emb|CBA14637.1| putative two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 221 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT +++ L + G+ + +IA L +S T+ ++ +I+RK R+ A+ A + + Sbjct: 149 ELTPQQIRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLLAGKLS 208 Query: 245 I 245 I Sbjct: 209 I 209 >gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 211 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 44/92 (47%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 RI+ + W +A +F+ +LT RE E L ++ G ++ EIA L Sbjct: 116 RIVHQGGSWMSAGVARRALELFRHQLAPAAALQQLTPREQEVLHLLARGLSNAEIAERLY 175 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +S TV +I I RK + R+ A++ ++N Sbjct: 176 LSIETVRTHIRHIYRKLQARNRAEAVSRLLQN 207 >gi|261324311|ref|ZP_05963508.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261300291|gb|EEY03788.1| two component transcriptional regulator [Brucella neotomae 5K33] Length = 161 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REVE + I G+++ IA LG+S TV ++ +IM+K R+ Sbjct: 96 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 144 >gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + EG ++ +I+ L +S+ TV +++ I K +R+ A+A A + Sbjct: 148 LTRRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 224 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + ++EG +S IA L +S TV N+ ++M+K +R + YA R + Sbjct: 158 LSPREQQVMRLVAEGGSSRSIAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGL 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 222 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G ++ +IA L +S TV N++ S +RK R YA+ + + Sbjct: 161 LSDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQSTLRKLQLGNRVELTRYAIEHGL 220 >gi|163786051|ref|ZP_02180499.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877911|gb|EDP71967.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 206 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT R+VE L IS+GKTS EIA L I +TV+ + +++R + + + YA+ Sbjct: 145 LTKRQVEILGLISQGKTSREIADELFIGVHTVDTHRKNMIRILGLQGKGELMRYAL 200 >gi|116695906|ref|YP_841482.1| response regulator [Ralstonia eutropha H16] gi|113530405|emb|CAJ96752.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 215 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E + +G +IA LG S +T+++ MRK +T +G I YA N Sbjct: 154 ELTQRELEVIRLYVQGLQLTDIAGKLGRSVSTISSQKTVAMRKLGVQTNTGLIRYAYENR 213 Query: 245 IV 246 ++ Sbjct: 214 LI 215 >gi|15896192|ref|NP_349541.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025991|gb|AAK80881.1|AE007791_1 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510347|gb|ADZ21983.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 215 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++LT R++E + I G ++ EIA ++ TV N+I I+ K + R+ +A++N Sbjct: 153 YKLTDRQIEIIIAIGSGLSNKEIAEKQYVTEGTVKNHITEILSKLEMRDRTQIAIFALKN 212 Query: 244 NIV 246 +V Sbjct: 213 ELV 215 >gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 242 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE E L W EGK++ I IL +S +TV ++ + M K ++ A+ A+ Sbjct: 181 KLTPREREVLQWTREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAM 237 >gi|326331785|ref|ZP_08198073.1| putative large transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325950584|gb|EGD42636.1| putative large transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 960 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 32/50 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ REVE + ++ G T+ ++A L IS TV+ ++++ MRK +R+ Sbjct: 893 QLSPREVEVIQLVARGMTNKQVADTLFISPRTVHRHVSTAMRKLDVSSRT 942 >gi|288922580|ref|ZP_06416759.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346054|gb|EFC80404.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 209 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +++G+ + + A LGIS T ++I ++M K +++ A+ A + Sbjct: 143 LTPRELDVLRQLAQGRDAQQTAATLGISLYTARDHIKALMAKLGARSQLEAVVSATSLGL 202 Query: 246 V 246 V Sbjct: 203 V 203 >gi|229588188|ref|YP_002870307.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229360054|emb|CAY46908.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 262 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ R+++ + +G+T+ +IA LGI+ NTV Y++ ++R T R+ +A A+ N Sbjct: 193 QLSPRQLDVARLVGKGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRT-QLALALSPN 251 >gi|294813824|ref|ZP_06772467.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442243|ref|ZP_08216977.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326423|gb|EFG08066.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 205 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A A+ R Sbjct: 141 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVAR 197 >gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] Length = 196 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 4/72 (5%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A Y A+ S DV ELT RE++ L +++G + +IA L IS +TV ++ S+ Sbjct: 117 VAKYLADRENSTDVFD----ELTDREMQILKEVAKGYRNKQIADTLFISESTVKVHMKSL 172 Query: 225 MRKTATKTRSGA 236 ++K + +R+ A Sbjct: 173 LKKLSVPSRTAA 184 >gi|167723585|ref|ZP_02406821.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167819715|ref|ZP_02451395.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167828097|ref|ZP_02459568.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167849564|ref|ZP_02475072.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167898163|ref|ZP_02485565.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167914883|ref|ZP_02501974.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922725|ref|ZP_02509816.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217418612|ref|ZP_03450119.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200238|ref|ZP_03795783.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|217397916|gb|EEC37931.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225927746|gb|EEH23788.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 254 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201 Query: 234 SGAIAYAV 241 + I A Sbjct: 202 NELIDLAA 209 >gi|309812776|ref|ZP_07706515.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] gi|308433293|gb|EFP57186.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] Length = 231 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE + +T I G + IA L +S NT+ +YI S R +RS A+ + Sbjct: 161 GRAEGLTEREAQAVTLICRGLPNGAIAHELNVSLNTLKSYIRSAYRTMGVASRSEAVLWG 220 Query: 241 VRNNI 245 V + Sbjct: 221 VARGL 225 >gi|302334993|ref|YP_003800200.1| transcriptional regulator, MarR family [Olsenella uli DSM 7084] gi|301318833|gb|ADK67320.1| transcriptional regulator, MarR family [Olsenella uli DSM 7084] Length = 366 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 186 LTGREVECLTWISEGK--TSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L+WI E T E+A GISR++V +++S+MRK A R Sbjct: 4 LTERERQILSWIEENPAVTQSELAGRAGISRSSVAVHVSSLMRKGAILGR 53 >gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 247 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L ++ G ++ EI+ +S TV ++ I+ KT ++ R A+ YA+ + Sbjct: 177 DLTPRELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGSRDRVHAVLYALTHG 236 Query: 245 IV 246 +V Sbjct: 237 VV 238 >gi|91776339|ref|YP_546095.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710326|gb|ABE50254.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 215 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + LT I+ G + EIA L +S TV+ Y A ++ K + + YA++NN+ Sbjct: 154 LSNREFQTLTMIASGLSVSEIAENLSLSVKTVSMYRARLLEKLNLRHNAELTHYAIKNNL 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis KIM 10] gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10] gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 220 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A + N Sbjct: 159 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 217 >gi|148821388|ref|YP_001286142.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970318|ref|ZP_02552595.1| transcriptional regulator, LuxR family protein [Mycobacterium tuberculosis H37Ra] gi|215406188|ref|ZP_03418369.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215414060|ref|ZP_03422719.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215425401|ref|ZP_03423320.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis T92] gi|215433115|ref|ZP_03431034.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215448474|ref|ZP_03435226.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis T85] gi|218755931|ref|ZP_03534727.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219555992|ref|ZP_03535068.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis T17] gi|253797117|ref|YP_003030118.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|254233582|ref|ZP_04926908.1| hypothetical protein TBCG_00193 [Mycobacterium tuberculosis C] gi|254366646|ref|ZP_04982690.1| hypothetical two component transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis str. Haarlem] gi|254549134|ref|ZP_05139581.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289552447|ref|ZP_06441657.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|289747962|ref|ZP_06507340.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|308394867|ref|ZP_07491786.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|124603375|gb|EAY61650.1| hypothetical protein TBCG_00193 [Mycobacterium tuberculosis C] gi|134152158|gb|EBA44203.1| hypothetical two component transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis str. Haarlem] gi|148719915|gb|ABR04540.1| two component transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis F11] gi|253318620|gb|ACT23223.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289437079|gb|EFD19572.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|289688490|gb|EFD55978.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|308367544|gb|EFP56395.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|323717184|gb|EGB26393.1| two component system transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326905951|gb|EGE52884.1| two component system transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328456904|gb|AEB02327.1| two component system transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 232 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REV L +++G ++ ++AV L T+ N + I+ + + R+ A+A+A+R + Sbjct: 172 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 231 Query: 246 V 246 + Sbjct: 232 I 232 >gi|158314150|ref|YP_001506658.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109555|gb|ABW11752.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 151 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE E + ++G+++ ++A LGI T +++ ++ KT +TR+ +A Sbjct: 62 YGLTPREREVVGLAAQGRSTRQMATALGIPPFTAQDHLKAVFTKTGVRTRAELVA 116 >gi|15598241|ref|NP_251735.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107102595|ref|ZP_01366513.1| hypothetical protein PaerPA_01003659 [Pseudomonas aeruginosa PACS2] gi|116051046|ref|YP_790127.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890755|ref|YP_002439619.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236018|ref|ZP_04929341.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719] gi|254241748|ref|ZP_04935070.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192] gi|296388460|ref|ZP_06877935.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313108339|ref|ZP_07794371.1| LOW QUALITY PROTEIN: putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9949150|gb|AAG06433.1|AE004729_7 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115586267|gb|ABJ12282.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167949|gb|EAZ53460.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719] gi|126195126|gb|EAZ59189.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192] gi|218770978|emb|CAW26743.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310880873|gb|EFQ39467.1| LOW QUALITY PROTEIN: putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 207 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 180 WGKDFELTGR----EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + D EL GR EV L ++S+G ++ +I+ + IS TV+ Y A ++ K + Sbjct: 137 YSDDVELLGRLSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVD 196 Query: 236 AIAYAVRNNIV 246 I +A RN ++ Sbjct: 197 LIEFAKRNTLI 207 >gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D + LT RE + L +++G T+ +IA L +S TV N++ S +RK R Sbjct: 149 SEDAAGAEPPRLTERETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRV 208 Query: 235 GAIAYAVRNNI 245 YA+ + + Sbjct: 209 ELARYAIEHGL 219 >gi|299141524|ref|ZP_07034660.1| transcriptional regulator, LuxR family domain protein [Prevotella oris C735] gi|298576860|gb|EFI48730.1| transcriptional regulator, LuxR family domain protein [Prevotella oris C735] Length = 318 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +L+ RE + + + +G ++ EIA L IS NTV + +I RK + +G YA+ Sbjct: 248 DDQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIV 307 Query: 243 NNIV 246 N++V Sbjct: 308 NHLV 311 >gi|256424453|ref|YP_003125106.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039361|gb|ACU62905.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 219 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + + +LT RE+E L I T+ EI+ + +S TV ++ KT K G + + Sbjct: 152 FRNEVQLTDRELEVLRLICNEHTTQEISKEIFLSPRTVEGLRQKLLEKTGAKNIVGLVMH 211 Query: 240 AVRNNIV 246 A RN I+ Sbjct: 212 AFRNGII 218 >gi|257791938|ref|YP_003182544.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475835|gb|ACV56155.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 258 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E I+EG ++ +I + L IS NTV ++ I +K R +A R Sbjct: 194 LTAREQEIAALIAEGLSNQQIGLRLFISENTVKKHVKGIFQKMGVSNRHQLMAELYRTAA 253 Query: 246 V 246 + Sbjct: 254 I 254 >gi|189467258|ref|ZP_03016043.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM 17393] gi|189435522|gb|EDV04507.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM 17393] Length = 250 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E L I++GK S +IA L IS NTVN + +I+ K Sbjct: 190 LSEREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEK 231 >gi|182436186|ref|YP_001823905.1| transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776812|ref|ZP_08236077.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|31044104|dbj|BAA33536.2| transcriptional regulator [Streptomyces griseus] gi|178464702|dbj|BAG19222.1| transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657145|gb|EGE41991.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 201 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D L+ RE+ L+ G T IA L ++ TV NY+A+ +RK+ + R AI A Sbjct: 138 DMPLSPRELSVLSMAEGGDTVAGIAGRLHLTPGTVRNYLAAAIRKSGARNRLDAIRRA 195 >gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G + IA L +S+ TV N+++ I RK RS AIA A I Sbjct: 153 LTLREQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVTDRSQAIAKAKEAGI 212 >gi|227549911|ref|ZP_03979960.1| possible nitrate/nitrite response regulator protein NarP [Corynebacterium lipophiloflavum DSM 44291] gi|227078007|gb|EEI15970.1| possible nitrate/nitrite response regulator protein NarP [Corynebacterium lipophiloflavum DSM 44291] Length = 215 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+E L ++ G T EI L IS TV + ++I+RKT T R Sbjct: 155 LTRRELEVLRLLARGYTYKEIGAQLFISVKTVETHASNILRKTQTSNR 202 >gi|153834026|ref|ZP_01986693.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] gi|148869670|gb|EDL68656.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] Length = 214 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G +++++A L +S T+ +++ I +K + K R AIA+A +N Sbjct: 153 DLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211 >gi|77459476|ref|YP_348983.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383479|gb|ABA74992.1| putative luxR family response regulator [Pseudomonas fluorescens Pf0-1] Length = 201 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT R+ E L I++GKT+ EIA L IS TV +++S++R +R+ A Sbjct: 143 LTPRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLRVLNVPSRAAA 193 >gi|308445190|gb|ADO32764.1| putative two-component response regulator [Streptomyces vietnamensis] Length = 202 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G + LT RE+E L + G + EIA +S TV NY+ S++ K + R A+ A Sbjct: 136 GAESPLTKRELEVLRLTAAGDEAPEIAARPHLSTGTVRNYLTSVVTKLNARNRVDAVRIA 195 >gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] Length = 273 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 209 DLVFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFIKTGTASRTELVRYALE 268 Query: 243 NNIV 246 + +V Sbjct: 269 HGLV 272 >gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++ G ++ EIA L I+ TV +I++I+ K + R+ A+ A Sbjct: 159 LTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKA 213 >gi|73539733|ref|YP_294253.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72117146|gb|AAZ59409.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 381 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F L+ E + +GK DE A G+S NTV + +I KT+T++++ A++ Sbjct: 314 FGLSTAEAAVAEALIDGKAPDEYAATAGVSVNTVRTQLRAIYDKTSTRSKTEAVS 368 >gi|300088662|ref|YP_003759184.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528395|gb|ADJ26863.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 248 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+ L +S+G T+ EIA+ L S + V Y+ IM K R+ A + N Sbjct: 186 QLSPREMSTLRLVSDGMTNKEIAMKLNCSESAVKGYVTRIMNKLNVTNRTQIALKASQLN 245 Query: 245 IV 246 I+ Sbjct: 246 II 247 >gi|182439415|ref|YP_001827134.1| LuxR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467931|dbj|BAG22451.1| putative LuxR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 98 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LTGRE + L ++ G T EIA L + T ++A+++ KT + R+ A+ Sbjct: 23 LTGREADVLRLMAAGLTDAEIAGRLQVGPATAKTHVAAVLAKTGARDRTQAV 74 >gi|149187161|ref|ZP_01865459.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838697|gb|EDL55636.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 227 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + +G ++ EIA L +S NTV ++ + +K K R A+ + V+NN Sbjct: 161 KLTKREQQIIKLLGDGASNTEIADTLFVSENTVKAHLHNAFKKIKVKNRLQALLW-VKNN 219 Query: 245 I 245 I Sbjct: 220 I 220 >gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans] Length = 249 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 28/56 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W S GKT EIA I IS +TV ++ +I+ K AI V Sbjct: 181 FTPRENEVLYWASMGKTYGEIATIASISLSTVKFHMGNIVVKLGVSNARQAIRLGV 236 >gi|326381419|ref|ZP_08203113.1| two component transcriptional regulator, LuxR family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199666|gb|EGD56846.1| two component transcriptional regulator, LuxR family protein [Gordonia neofelifaecis NRRL B-59395] Length = 209 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G D ELT REV+ L + G ++ +IA L I TV +++ ++ K ++R A Sbjct: 141 GPDLSELTDREVQVLGGLGAGLSNAQIAGRLTIGEATVKTHVSRVLMKLGVQSRVQAAVL 200 Query: 240 AVRNNI 245 A R+ + Sbjct: 201 AARSGV 206 >gi|319944660|ref|ZP_08018927.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] gi|319742099|gb|EFV94519.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] Length = 233 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G+++ EIA L ++ +TV ++ +I++K +R YAV N + Sbjct: 169 LTAREREIMQCLARGESNKEIARRLDVAESTVKIHVQNILKKLNLSSRVQIAVYAVENGL 228 >gi|297538155|ref|YP_003673924.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257502|gb|ADI29347.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 215 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%) Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 RI+ + + + E+G + A Q M H L+ RE + +T I+ G T EIA Sbjct: 121 RIVAKGKKYISPEVGEILANQVGMETEKAPHES----LSDREFQTMTLIASGFTVGEIAE 176 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S T++ Y ++ K + + YA++N++V Sbjct: 177 KLALSVKTISMYRTRMLEKLNLRHNAELTHYAIKNHLV 214 >gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 552 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE++ L + +G ++ EI+ L IS +TV N+I +I +K RS IA Sbjct: 482 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 535 >gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 158 DLTERETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|126458443|ref|YP_001075546.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134283506|ref|ZP_01770206.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167742549|ref|ZP_02415323.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|242312929|ref|ZP_04811946.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|126232211|gb|ABN95624.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134245255|gb|EBA45349.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|242136168|gb|EES22571.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] Length = 252 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 140 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 199 Query: 234 SGAIAYAV 241 + I A Sbjct: 200 NELIDLAA 207 >gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 207 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 146 LTERETEILRHVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQIGNRVELARYAIEHGL 205 >gi|86741458|ref|YP_481858.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86568320|gb|ABD12129.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 306 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE L ++ G ++ EIA L ++ TV Y+ MRK R A YA Sbjct: 217 QALGLTSRERAVLGQLARGLSNAEIACELALAEATVKRYLTGAMRKIGQPDRLRAGLYAY 276 Query: 242 RNNIV 246 R+ ++ Sbjct: 277 RHGLL 281 >gi|83716364|ref|YP_439443.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|167577886|ref|ZP_02370760.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616010|ref|ZP_02384645.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142565|ref|ZP_05590827.1| LuxR family DNA-binding response regulator [Burkholderia thailandensis E264] gi|83650189|gb|ABC34253.1| DNA-binding response regulator, LuxR family [Burkholderia thailandensis E264] Length = 215 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y A I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKL 208 >gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 244 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G ++ EIA L ++ +T+ ++ S++ K R+ A+ A++ Sbjct: 181 KLSEREIEVLRLVAKGNSNKEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRG 240 Query: 245 IV 246 ++ Sbjct: 241 LL 242 >gi|291007043|ref|ZP_06565016.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 198 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +++G + EIA L S TV N + + + + R A+AYA+R + Sbjct: 138 LTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGV 197 Query: 246 V 246 + Sbjct: 198 I 198 >gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3] Length = 201 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT R++E L + G EIA L +S TV NY++S+ K +TR A+ A Sbjct: 141 LTERQLEILRLAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKLNARTRMDAVRIA 195 >gi|256841922|ref|ZP_05547427.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736238|gb|EEU49567.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 194 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE L + E D+IA +L IS +TV N+I +I KT+T+T + + Y +N+ Sbjct: 134 LSFRETNVLRLVIERYKVDDIAQLLHISPHTVANHIRNIHEKTSTRTIADLVDYWHTHNL 193 >gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 194 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA LG+S +TV +++A + K R+ A++ A Sbjct: 133 LTPRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHLARLYSKLDAGDRTEAVSRA 187 >gi|188592307|ref|YP_001796905.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] gi|170938681|emb|CAP63668.1| putative transcriptionat regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 379 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K F LT E+E + +G T DE A LG+ +NT ++ I KT TR + + Sbjct: 313 KLFHLTPTEIELALLMVDGLTLDEAATRLGVKKNTARAHLRGIFAKTGA-TRQAVLVKML 371 Query: 242 RNNIV 246 +++V Sbjct: 372 LSSVV 376 >gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae L20] gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 209 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|325269083|ref|ZP_08135704.1| transcriptional regulator [Prevotella multiformis DSM 16608] gi|324988704|gb|EGC20666.1| transcriptional regulator [Prevotella multiformis DSM 16608] Length = 217 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L+ I +G + EIA L IS TV + +IM K ++ S YAV Sbjct: 152 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 207 >gi|308231489|ref|ZP_07412623.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu001] gi|308369330|ref|ZP_07417366.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu002] gi|308370340|ref|ZP_07421139.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu003] gi|308371615|ref|ZP_07425507.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu004] gi|308372832|ref|ZP_07430042.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu005] gi|308373913|ref|ZP_07434085.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu006] gi|308375096|ref|ZP_07442660.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|308376332|ref|ZP_07438447.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|308378574|ref|ZP_07483048.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|308379720|ref|ZP_07487281.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|308380921|ref|ZP_07491499.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu011] gi|308217119|gb|EFO76518.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu001] gi|308328057|gb|EFP16908.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu002] gi|308332337|gb|EFP21188.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu003] gi|308336088|gb|EFP24939.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu004] gi|308339719|gb|EFP28570.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu005] gi|308343725|gb|EFP32576.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu006] gi|308347445|gb|EFP36296.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|308351495|gb|EFP40346.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|308352073|gb|EFP40924.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|308356023|gb|EFP44874.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|308359978|gb|EFP48829.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu011] Length = 213 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REV L +++G ++ ++AV L T+ N + I+ + + R+ A+A+A+R + Sbjct: 153 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|218458076|ref|ZP_03498167.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5] Length = 49 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R Sbjct: 1 DGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 44 >gi|170700161|ref|ZP_02891180.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134936|gb|EDT03245.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 395 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E E + +G T DE A GI++NT ++ I KT TR + + N Sbjct: 331 FRLTPMETEIALLLVDGLTLDEAAAATGITKNTARAHLRGIFAKTGA-TRQAVLVKTLLN 389 Query: 244 NIV 246 ++V Sbjct: 390 SVV 392 >gi|154493931|ref|ZP_02033251.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC 43184] gi|154086191|gb|EDN85236.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC 43184] Length = 202 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 135 LSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKL 194 Query: 246 V 246 V Sbjct: 195 V 195 >gi|149911017|ref|ZP_01899646.1| regulatory protein CsgD [Moritella sp. PE36] gi|149805920|gb|EDM65906.1| regulatory protein CsgD [Moritella sp. PE36] Length = 230 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L + G ++ EIA L +S +T+ +++ ++ +K K R A+++A Sbjct: 170 ELTTREQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVFKKIKVKNRLQAVSWA 225 >gi|116620528|ref|YP_822684.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223690|gb|ABJ82399.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 251 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + ++ +S+G + EIA L IS TV Y++ + +K K R + ++N Sbjct: 139 LTQREGQLVSLLSQGLKNKEIATTLMISEGTVKVYLSRLFQKVGVKDRFELALFGLKN 196 >gi|300786261|ref|YP_003766552.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795775|gb|ADJ46150.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L+ +E L ++EG T+ +IA L ++ TV NY++S++ K + R+ A Y Sbjct: 153 QLSPQERRVLDLVAEGLTNRQIAERLFLAEKTVKNYVSSVLHKLGVERRTSAAVY 207 >gi|157850157|gb|ABV89904.1| acyl-homoserine lactone receptor [Burkholderia pyrrocinia] Length = 137 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 21/33 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 LT RE E L W +EGKT+ EI IL IS TV Sbjct: 102 LTAREREVLCWTAEGKTACEIGQILSISERTVT 134 >gi|182437557|ref|YP_001825276.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466073|dbj|BAG20593.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 219 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 157 LTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213 >gi|330998685|ref|ZP_08322414.1| transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] gi|329576424|gb|EGG57936.1| transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] Length = 226 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +LT RE L I G+ + +IA LGIS TV + ASIM KT + T Sbjct: 156 KLTPREQHVLERIVSGRLNKQIAADLGISIKTVEAHRASIMDKTNSGT 203 >gi|323359244|ref|YP_004225640.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] gi|323275615|dbj|BAJ75760.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] Length = 283 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Query: 155 LRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +R RL E+ LAA + +S + D L+ RE++ L + G T+ EIA L + Sbjct: 193 VRRRLEELEARLAALTGDAPRSGE---DADIHLSRREIDVLACAAVGSTNGEIAASLHLR 249 Query: 214 RNTVNNYIASIMRKTATKT 232 TV +Y+AS M K T Sbjct: 250 ETTVKSYLASAMAKLDAST 268 >gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + S +G +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + Sbjct: 147 LMPSAQAAYG---DLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 204 DRTQAAVFAYEARLV 218 >gi|239929196|ref|ZP_04686149.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 291 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F+L+ RE E + I+ G + +IA IS TV N+I I K + +RS A A Sbjct: 223 FQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAA 277 >gi|291299597|ref|YP_003510875.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568817|gb|ADD41782.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 135 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ GK++ EI L I+ +TV + + RK + R+ A+A A R I Sbjct: 73 LSQRETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRTGI 132 Query: 246 V 246 + Sbjct: 133 L 133 >gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 261 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G +LT RE E L +++ G +++EIA L IS TV ++A IM K R+ + A Sbjct: 192 GGLVDLTDREREILRFVARGMSNEEIADDLVISPATVKTHLARIMGKLDAHDRAQLVVAA 251 Query: 241 VRNNIV 246 + +V Sbjct: 252 YESGLV 257 >gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 229 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+ + Sbjct: 166 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 225 Query: 244 NIV 246 + Sbjct: 226 GLA 228 >gi|83717618|ref|YP_439471.1| transcription regulator LuxR family protein [Burkholderia thailandensis E264] gi|83651443|gb|ABC35507.1| transcription regulator LuxR family VCA1078 [Burkholderia thailandensis E264] Length = 268 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 155 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 214 Query: 234 SGAIAYAV 241 + I A Sbjct: 215 NELIDLAA 222 >gi|89094462|ref|ZP_01167402.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89081354|gb|EAR60586.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT ++ LT ++EG + +IA L +S T+ ++ +I+RK +R+ A+ A R Sbjct: 154 LTPQQFRVLTMLTEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQR 210 >gi|260062316|ref|YP_003195396.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Robiginitalea biformata HTCC2501] gi|88783878|gb|EAR15049.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Robiginitalea biformata HTCC2501] Length = 217 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L I++G+TS +IA L +SR T++ + +I +K ++ G + A Sbjct: 148 LTRRERQVLELIAQGRTSQQIAESLKLSRFTIDTHRKNIHKKMGIRSNIGLLKAA 202 >gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 209 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G + EIA L IS +TV ++ I+ K R+ A A+R + Sbjct: 149 LTPRELDVLRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAAVKALRAGL 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E LT I EG T+ EI L +S TV N+I+ ++ K + R A A Sbjct: 151 LSTREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIA 205 >gi|238899236|ref|YP_002924919.1| hypothetical protein HDEF_2226 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466997|gb|ACQ68771.1| hypothetical protein, HTH domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 88 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +L+ RE+E L+ G T EIA+ L IS +TV+NY + M K Sbjct: 18 KLSKREIEVLSMSRSGLTRSEIALELNISVSTVDNYFNNAMHK 60 >gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020] Length = 201 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G +LT REV+ L + G+ IA L +S TV NY+ +I+ K + R A+ A Sbjct: 136 GPAQQLTPREVDVLRLAAAGEDVRVIAKELHLSIGTVRNYLTTIVHKLGARNRVDAVRIA 195 Query: 241 VRNNIV 246 N ++ Sbjct: 196 RDNGVI 201 >gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 244 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E + G+ + IA LGI+ TV ++ +I+RK K R+ A+A+A+ Sbjct: 161 LSEREIETFRRMCRGEPNKVIAQNLGITEATVKVHVKAILRKLHLKNRTQAVAWAL 216 >gi|86361169|ref|YP_473056.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285271|gb|ABC94329.1| transcriptional regulator (activator) protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++CL + G + +I+ L IS + V Y+AS RK T S A+A A Sbjct: 180 HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 235 >gi|49079490|gb|AAT49898.1| PA3045 [synthetic construct] Length = 208 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 180 WGKDFELTGR----EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + D EL GR EV L ++S+G ++ +I+ + IS TV+ Y A ++ K + Sbjct: 137 YSDDVELLGRLSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVD 196 Query: 236 AIAYAVRNNIV 246 I +A RN ++ Sbjct: 197 LIEFAKRNTLI 207 >gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 219 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E L I+ G + EIA L IS TV N++ +I+ + + R+ A A Sbjct: 153 DLTPREKEVLRLIAAGANNREIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208 >gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I++ T+ EI L +S TV N++++I K TR+ AI A Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRA 213 >gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 246 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 183 IDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 242 Query: 244 NI 245 + Sbjct: 243 GL 244 >gi|260769447|ref|ZP_05878380.1| two component transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] gi|260614785|gb|EEX39971.1| two component transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] Length = 159 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L +S+G T+ EIA + +S T++ Y +M K + + I +A RN + Sbjct: 99 LSDREMMVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGV 158 Query: 246 V 246 V Sbjct: 159 V 159 >gi|254498951|ref|ZP_05111654.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351809|gb|EET10641.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 258 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 26/42 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 +LT ++ CL +++GK + EIA + IS TV +Y+A M Sbjct: 199 QLTHQQAACLKLLAQGKAAKEIARTMNISYRTVEDYLAKTME 240 >gi|253688783|ref|YP_003017973.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755361|gb|ACT13437.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 210 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L ++ G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 150 LTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAA 200 >gi|271963218|ref|YP_003337414.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506393|gb|ACZ84671.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 197 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L S G + EIAV L ++ TV NY++S + K R AI A Sbjct: 137 LTERERDALALASRGASVGEIAVSLHLTEGTVRNYLSSAITKLGASNRITAIHAA 191 >gi|284990646|ref|YP_003409200.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063891|gb|ADB74829.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 220 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L + G + +IA LGI +TV ++ S+ ++ + R+ A +A Sbjct: 145 ELTEREQEVLALVGHGLANKQIARRLGIRESTVKAHLTSVFQRIGVRDRTSATLWA 200 >gi|328886268|emb|CCA59507.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 203 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L +EG EIA L +S TV NY+ S++ K + R AI A+ Sbjct: 142 LTTRETEVLRLAAEGLEPIEIAGRLRLSLGTVRNYLTSVVTKLNARNRVDAIKIAM 197 >gi|320094467|ref|ZP_08026245.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978600|gb|EFW10165.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 243 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTG+EVE L I+ G T+ EI +S TV ++ ++ KT + R + A+R + Sbjct: 170 LTGKEVEILRLIARGLTNQEICDAQWVSMATVKTHVGHLLAKTGARDRVQLVLLALRAGL 229 Query: 246 V 246 + Sbjct: 230 M 230 >gi|302340328|ref|YP_003805534.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637513|gb|ADK82940.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 217 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +L+ RE E + +G ++DEIA +L I+ TV N+I SI K+ RS I Sbjct: 160 QLSRREREVYGLMLQGYSNDEIAEMLFIATQTVKNHIRSIYSKSGFHNRSDII 212 >gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + EGK + EIA L IS TV ++I I RK R A+ A I Sbjct: 152 LTTREKDVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKKI 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|291452585|ref|ZP_06591975.1| two-component system response regulator [Streptomyces albus J1074] gi|291355534|gb|EFE82436.1| two-component system response regulator [Streptomyces albus J1074] Length = 220 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G D L+G +E L I EG T+ I L ++ T+ NY+++++ K + RS A Sbjct: 149 GDDDRLSGLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMERRSQAA 208 Query: 238 AYAVR 242 AY R Sbjct: 209 AYVAR 213 >gi|222112002|ref|YP_002554266.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221731446|gb|ACM34266.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 210 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNK 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|182677301|ref|YP_001831447.1| two component LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633184|gb|ACB93958.1| two component transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 229 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE E L ++ EGK+ EIA L + TV N ++ + +K T I +AV Sbjct: 155 DLSEREREVLHFMGEGKSLGEIARALSLGYKTVANIVSMLKQKLGVTTSPALIKFAV 211 >gi|241663249|ref|YP_002981609.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|309782519|ref|ZP_07677243.1| transcriptional regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gi|240865276|gb|ACS62937.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12D] gi|308918856|gb|EFP64529.1| transcriptional regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 181 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H LT RE + + EGKTS +I L IS TV Y A +M+K A T Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLEISPRTVEIYRARLMKKYAANT 170 >gi|94968001|ref|YP_590049.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550051|gb|ABF39975.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 227 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K+F LT RE+E L I G T+ EIA +S +TV +++ +I K +R Sbjct: 159 KNFGLTKREMEILGTIVAGFTNKEIAKKFNLSEDTVKHHLTNIFDKVGVSSR 210 >gi|91975755|ref|YP_568414.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91682211|gb|ABE38513.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 318 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+ L+W+ G +IA + IS TV++++ +++RK K RS A A N Sbjct: 241 LSYREMVVLSWLMIGMADRDIAAEMFISERTVHSHVTALLRKLKVKRRSQAAIIAALNR 299 >gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 249 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE+E L ++ G ++ EIA +S TV ++ ++ KT ++ R A+ Sbjct: 173 QGVPADLTPRELEVLECMAHGLSNGEIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVL 232 Query: 240 AVRNNIV 246 A +V Sbjct: 233 AYAAGLV 239 >gi|329928715|ref|ZP_08282564.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937496|gb|EGG33914.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 216 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F LT E + + I+EG ++ EIA L +S TV NY+ I+ K + R+ Sbjct: 154 FGLTPAEKKVVALIAEGLSNKEIAAQLYLSEGTVKNYVTDILGKLNLRDRT 204 >gi|317501835|ref|ZP_07960020.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896725|gb|EFV18811.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium 8_1_57FAA] Length = 199 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 28/56 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E + I GKT EIA L IS T+ N+I SI K K A A+ Sbjct: 135 LTDREAEIIKAIGTGKTKHEIAQELYISERTLYNHIQSIYDKLGAKNAIEAYNKAI 190 >gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 237 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I++G ++ +IA + +S NT+ + SI RK A K+R+ A+ A+++ + Sbjct: 176 LSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLAVKSRTQAVHEAMQHGL 235 Query: 246 V 246 + Sbjct: 236 L 236 >gi|221067196|ref|ZP_03543301.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|264678380|ref|YP_003278287.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|299532225|ref|ZP_07045619.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|220712219|gb|EED67587.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|262208893|gb|ACY32991.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|298719887|gb|EFI60850.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 217 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +LTGRE + L I G+ + +IA LGIS TV + A+IM K T Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANT 192 >gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] Length = 531 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE++ L + +G ++ EI+ L IS +TV N+I +I +K RS IA Sbjct: 461 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 514 >gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 224 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A +A + +H LT RE E L+ IS+ T+ EIA L IS TV+++ A +M+ Sbjct: 145 AEEAGKYSKLAIH------LTEREREILSLISQEFTNIEIAERLFISPRTVDSHRARLMQ 198 Query: 227 KTATKTRSGAIAYAV 241 K T+ +G + A+ Sbjct: 199 KLGTRNTAGLVRIAM 213 >gi|303258101|ref|ZP_07344109.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|302859120|gb|EFL82203.1| DNA-binding response regulator, LuxR family [Burkholderiales bacterium 1_1_47] Length = 222 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +LT RE L I G+ + +IA LGIS TV + ASIM KT + T Sbjct: 152 KLTPREQHVLERIVSGRLNKQIAADLGISIKTVEAHRASIMDKTNSGT 199 >gi|298252261|ref|ZP_06976064.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546853|gb|EFH80721.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1056 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ +E L ++ G+++ EIA L IS NTV ++ SI RK +R A A A R + Sbjct: 996 LSTQEQRVLALLAAGRSNPEIAETLIISVNTVKGHVKSIYRKLDVNSRIEASAAASRLKL 1055 Query: 246 V 246 + Sbjct: 1056 I 1056 >gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L I +G ++ EIA L +S +TV+ +++ ++ KT ++R+ A A RN Sbjct: 144 DLTEREIDVLRLIRDGLSNAEIAERLVVSLHTVSTHVSRVLTKTGCQSRAQAAVLA-RNT 202 Query: 245 I 245 + Sbjct: 203 L 203 >gi|254703683|ref|ZP_05165511.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 3 str. 686] gi|261754322|ref|ZP_05998031.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261744075|gb|EEY32001.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 213 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ LT ++EG + +IA LG+S TV +++++++K +R+ A+ Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200 >gi|256423489|ref|YP_003124142.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Chitinophaga pinensis DSM 2588] gi|256038397|gb|ACU61941.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Chitinophaga pinensis DSM 2588] Length = 196 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/28 (53%), Positives = 22/28 (78%) Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMR 226 EGK+ DE++++LGIS +TVNN+I R Sbjct: 146 EGKSHDEVSLLLGISPSTVNNHIVKATR 173 >gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 226 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 41/62 (66%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT E + ++++++G ++ EIA L +S+ T+ +++++++ KT+ R+ +A+ + Sbjct: 165 ELTPTETKVVSFVAQGLSNREIAEKLNVSQRTIESHVSNMLNKTSLNNRTELARWAMDSR 224 Query: 245 IV 246 +V Sbjct: 225 LV 226 >gi|134099110|ref|YP_001104771.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911733|emb|CAM01846.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 209 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE++ L +SEG +IA L S TV N + + R+ A++YA+R+ + Sbjct: 149 VTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQFTSRFNLHNRAHAVSYAIRSGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|56476467|ref|YP_158056.1| two-component response regulator [Aromatoleum aromaticum EbN1] gi|56312510|emb|CAI07155.1| Two-component response regulator [Aromatoleum aromaticum EbN1] Length = 218 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E L + G +S E+A ILGIS TV + +M K K+ I A+ Sbjct: 146 LSQREKEILDLVVGGNSSKEVARILGISHKTVEAHRGRLMSKLGVKSLGELIQLAM 201 >gi|119775211|ref|YP_927951.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767711|gb|ABM00282.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 238 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 GK +LT ++ L +EG + +IA LG+S T+ + +I RK + R+ A+ Sbjct: 165 GKLADLTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 221 >gi|294788302|ref|ZP_06753545.1| nitrate/nitrite response regulator protein NarL [Simonsiella muelleri ATCC 29453] gi|294483733|gb|EFG31417.1| nitrate/nitrite response regulator protein NarL [Simonsiella muelleri ATCC 29453] Length = 220 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVIL 210 R + D ++ + A ++ + ++ G + LT RE+E L ++ G ++ IA L Sbjct: 120 RAVDGDNVFSPEMTARLVQSLIRPHNAGTGSALDTLTPRELEILGHLAAGHSNKIIARQL 179 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ T+ ++ +I+RK +R A YAV++ + Sbjct: 180 DLAEFTIKVHVQNILRKLELSSRVQAAVYAVQHKV 214 >gi|312194794|ref|YP_004014855.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226130|gb|ADP78985.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L RE E + EG ++ +IA LG+S TV NY++S++ K +R+ A A + + Sbjct: 147 LGDREREVFHLLGEGLSNRQIAGRLGLSDKTVKNYVSSMLSKLRLTSRTQAAILATKTD 205 >gi|290962909|ref|YP_003494091.1| response regulator [Streptomyces scabiei 87.22] gi|260652435|emb|CBG75568.1| putative response regulator [Streptomyces scabiei 87.22] Length = 288 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L ++ G T+ +I+ L I TV Y+ S MRK T TR A+ A R + Sbjct: 227 LSPRELDVLAAVAAGCTNLDISGRLDIGLETVKGYLRSAMRKLGTTTRFEAVTAARRAGL 286 Query: 246 V 246 + Sbjct: 287 L 287 >gi|167622824|ref|YP_001673118.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352846|gb|ABZ75459.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 211 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE+E L ++EG+++ +A L IS TV ++ +++RK K+R+ Sbjct: 152 LTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRT 200 >gi|218780409|ref|YP_002431727.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761793|gb|ACL04259.1| two component transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 212 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L ++ G T+ EIA IS TV+ Y A +++K + + +A++NN+ Sbjct: 150 LSKRELQVLRHLASGHTNREIADSYHISVKTVDTYRARLLKKLNLRNNADISRFAIQNNL 209 Query: 246 V 246 + Sbjct: 210 I 210 >gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] Length = 218 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+ +G ++ EIA L +S +T+ ++I +++RK R+ A AY +R+++ Sbjct: 152 LTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 210 >gi|157960657|ref|YP_001500691.1| two component LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845657|gb|ABV86156.1| two component transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 209 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE+E L ++EG+++ +A L IS TV ++ +++RK K+R+ Sbjct: 152 LTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRT 200 >gi|11465487|ref|NP_045122.1| regulatory component of sensory transduction system [Cyanidium caldarium] gi|6466390|gb|AAF12972.1|AF022186_95 unknown [Cyanidium caldarium] Length = 209 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT +E L I++G + +I + I V NY++ +++K+ + RS + ++ Sbjct: 144 KPIKLTEKEQCILNLIAQGVVNKKIKKLTFIGARYVENYVSKMLKKSQSNNRSELVIKSI 203 Query: 242 RNNIV 246 +N IV Sbjct: 204 KNKIV 208 >gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 219 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + G ++ EIA LGIS TV ++ ++ K +R+ A+ +R Sbjct: 153 DLSPRELEVLRAAARGGSNKEIARALGISPRTVQVHLGNVFSKLNVGSRTEAVLAGIRRG 212 >gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 199 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE L I++GK + EIA L ++ TV NYI+ I+ K R AI Sbjct: 138 LTEREKTVLALIADGKNTKEIAGELFLTTGTVRNYISVILDKLGVSNRIEAI 189 >gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 199 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE L I++GK + EIA L ++ TV NYI+ I+ K R AI Sbjct: 138 LTEREKTVLALIADGKNTKEIAGELYLTTGTVRNYISVILDKLGVSNRIEAI 189 >gi|302391963|ref|YP_003827783.1| LuxR family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302204040|gb|ADL12718.1| transcriptional regulator, LuxR family [Acetohalobium arabaticum DSM 5501] Length = 259 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++ + RE+E + G ++EIA L IS NTV ++ SI RK +R+ Sbjct: 196 YKFSNREIEVAKLVVSGLNNEEIAGELFISINTVKKHLYSIFRKIGVNSRA 246 >gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 162 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +T RE+E LT I+ G ++ EIA L +S NTV + A K R+ A+ Sbjct: 101 ITARELETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAV 152 >gi|227327331|ref|ZP_03831355.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 224 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + RE E L W S GKT EIA+IL I +TV +I ++++ +A Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKNSA 223 >gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 217 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L+ ++ G T+ EIA L ++ TV +++ +I RK K R A++ A Sbjct: 156 LSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALSRA 210 >gi|297193917|ref|ZP_06911315.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720280|gb|EDY64188.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 231 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IAV +GI+ +T ++ ++ K +R Sbjct: 156 LTPREVEVLVRVAEGEDTRLIAVGMGIAPSTARTHVQRVLMKLGVGSR 203 >gi|220921119|ref|YP_002496420.1| two component LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945725|gb|ACL56117.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A A+ + G+ ELT R+ + L + EGK++ EIA L + TV ++A+++R Sbjct: 166 ARPASEAAEGGLRGGRSVELTPRQRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLR 225 Query: 227 KTATK 231 + Sbjct: 226 SLGVQ 230 >gi|84622783|ref|YP_450155.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366723|dbj|BAE67881.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 552 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A A Sbjct: 479 RELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQA 530 >gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli] Length = 217 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L +S G ++ IA L IS TV ++ I K TR+GA+A A Sbjct: 156 LTPREQDILAHLSRGLSNHAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVA 210 >gi|17987890|ref|NP_540524.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M] gi|23501222|ref|NP_697349.1| LuxR family DNA-binding response regulator [Brucella suis 1330] gi|62289309|ref|YP_221102.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699239|ref|YP_413813.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161618298|ref|YP_001592185.1| two component LuxR family transcriptional regulator [Brucella canis ATCC 23365] gi|163842602|ref|YP_001627006.1| two component LuxR family transcriptional regulator [Brucella suis ATCC 23445] gi|189023562|ref|YP_001934330.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626842|ref|ZP_03784881.1| glycerol metabolism activator [Brucella ceti str. Cudo] gi|225851861|ref|YP_002732094.1| LuxR family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|237814800|ref|ZP_04593798.1| glycerol metabolism activator [Brucella abortus str. 2308 A] gi|254688629|ref|ZP_05151883.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 6 str. 870] gi|254696752|ref|ZP_05158580.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701135|ref|ZP_05162963.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 5 str. 513] gi|254707944|ref|ZP_05169772.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M163/99/10] gi|254709478|ref|ZP_05171289.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis B2/94] gi|254718509|ref|ZP_05180320.1| two component transcriptional regulator, LuxR family protein [Brucella sp. 83/13] gi|254729661|ref|ZP_05188239.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 4 str. 292] gi|256030972|ref|ZP_05444586.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M292/94/1] gi|256044043|ref|ZP_05446954.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060463|ref|ZP_05450634.1| two component transcriptional regulator, LuxR family protein [Brucella neotomae 5K33] gi|256112839|ref|ZP_05453760.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 3 str. Ether] gi|256159018|ref|ZP_05456855.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M490/95/1] gi|256254376|ref|ZP_05459912.1| two component transcriptional regulator, LuxR family protein [Brucella ceti B1/94] gi|256256876|ref|ZP_05462412.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 9 str. C68] gi|256264624|ref|ZP_05467156.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256368775|ref|YP_003106281.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260168107|ref|ZP_05754918.1| DNA-binding response regulator, LuxR family protein [Brucella sp. F5/99] gi|260545936|ref|ZP_05821677.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260563402|ref|ZP_05833888.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567065|ref|ZP_05837535.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260754100|ref|ZP_05866448.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757320|ref|ZP_05869668.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761144|ref|ZP_05873487.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883126|ref|ZP_05894740.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261221537|ref|ZP_05935818.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261315435|ref|ZP_05954632.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317000|ref|ZP_05956197.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261324454|ref|ZP_05963651.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751668|ref|ZP_05995377.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757557|ref|ZP_06001266.1| bacterial regulatory protein [Brucella sp. F5/99] gi|265983478|ref|ZP_06096213.1| two component transcriptional regulator [Brucella sp. 83/13] gi|265988037|ref|ZP_06100594.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990454|ref|ZP_06103011.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994282|ref|ZP_06106839.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997500|ref|ZP_06110057.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|294851704|ref|ZP_06792377.1| two component LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297247726|ref|ZP_06931444.1| two component LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306838316|ref|ZP_07471162.1| two component LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306842417|ref|ZP_07475069.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306844955|ref|ZP_07477536.1| two component LuxR family transcriptional regulator [Brucella sp. BO1] gi|17983624|gb|AAL52788.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M] gi|23347103|gb|AAN29264.1| DNA-binding response regulator, LuxR family [Brucella suis 1330] gi|62195441|gb|AAX73741.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82615340|emb|CAJ10301.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161335109|gb|ABX61414.1| two component transcriptional regulator, LuxR family [Brucella canis ATCC 23365] gi|163673325|gb|ABY37436.1| two component transcriptional regulator, LuxR family [Brucella suis ATCC 23445] gi|189019134|gb|ACD71856.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225618499|gb|EEH15542.1| glycerol metabolism activator [Brucella ceti str. Cudo] gi|225640226|gb|ACO00140.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis ATCC 23457] gi|237789637|gb|EEP63847.1| glycerol metabolism activator [Brucella abortus str. 2308 A] gi|255998933|gb|ACU47332.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260097343|gb|EEW81218.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260153418|gb|EEW88510.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156583|gb|EEW91663.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260667638|gb|EEX54578.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671576|gb|EEX58397.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674208|gb|EEX61029.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872654|gb|EEX79723.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260920121|gb|EEX86774.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261296223|gb|EEX99719.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300434|gb|EEY03931.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261304461|gb|EEY07958.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737541|gb|EEY25537.1| bacterial regulatory protein [Brucella sp. F5/99] gi|261741421|gb|EEY29347.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262551968|gb|EEZ07958.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|262765395|gb|EEZ11184.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001238|gb|EEZ13813.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094991|gb|EEZ18699.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264660234|gb|EEZ30495.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264662070|gb|EEZ32331.1| two component transcriptional regulator [Brucella sp. 83/13] gi|294820293|gb|EFG37292.1| two component LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297174895|gb|EFH34242.1| two component LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306274587|gb|EFM56376.1| two component LuxR family transcriptional regulator [Brucella sp. BO1] gi|306287439|gb|EFM58916.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306406607|gb|EFM62840.1| two component LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|326408357|gb|ADZ65422.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326538072|gb|ADZ86287.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis M5-90] Length = 213 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ LT ++EG + +IA LG+S TV +++++++K +R+ A+ Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200 >gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM 15272] gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM 15272] Length = 218 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L ++ G+T+ EIA L I+ +TV ++A++M K + R Sbjct: 156 LTEREEEVLLTVARGRTNAEIADELHITLSTVKTHVAALMNKLGARNR 203 >gi|257142596|ref|ZP_05590858.1| transcription regulator LuxR family protein [Burkholderia thailandensis E264] Length = 255 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201 Query: 234 SGAIAYAV 241 + I A Sbjct: 202 NELIDLAA 209 >gi|209518473|ref|ZP_03267295.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209501106|gb|EEA01140.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 262 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 LT RE L I+EG+T+ ++ L +S T+ Y AS+M K A Sbjct: 156 LTARERSVLKLIAEGRTNRQVGEYLNLSPKTIEKYRASVMHKLA 199 >gi|154486396|ref|ZP_02027803.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis L2-32] gi|154084259|gb|EDN83304.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis L2-32] Length = 221 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + ++ ++G EIA L IS NTV ++ I++K KT A+A VR++ Sbjct: 161 LTVREEQIISLCADGMLDREIAERLDISENTVRKHMQGILKKLNCKTARQAVALWVRSH 219 >gi|38637927|ref|NP_942901.1| nitrate/nitrite response regulator [Ralstonia eutropha H16] gi|32527265|gb|AAP86015.1| nitrate/nitrite response regulator [Ralstonia eutropha H16] Length = 220 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G+++ EIA LG++ +TV ++ +I++K +R YAV + + Sbjct: 157 LTVREREIVQELARGESNKEIARTLGVAASTVKIHVQNILKKLNLASRVQVAVYAVEHRL 216 >gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas haloplanktis TAC125] Length = 218 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVH--WGKDFE---LTGREVECLTWISEGKTS 203 R++L D+LW +I A + F +H D E LT RE ++ +S G + Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGSKN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EIA L IS +TV ++ S RKT + R +++A Sbjct: 173 KEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWA 209 >gi|327439322|dbj|BAK15687.1| DNA-binding HTH domain-containing protein [Solibacillus silvestris StLB046] Length = 73 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + + ++ EI+ LGIS TV N+I++ ++K +R+ AI +R Sbjct: 10 LTKREREIFELLIKDYSTREISTKLGISEKTVRNHISNTIQKLGVSSRTQAILELLR 66 >gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 210 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT E++ + +++ G + EIA L +S+ TV +++++++ KT R+ +A+ Sbjct: 147 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 206 Query: 243 NNI 245 N + Sbjct: 207 NQM 209 >gi|270294227|ref|ZP_06200429.1| transcriptional regulator [Bacteroides sp. D20] gi|270275694|gb|EFA21554.1| transcriptional regulator [Bacteroides sp. D20] Length = 254 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 28/45 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 D +L+ RE E L I +G S EIA LG+S TVNN+ +I+ K Sbjct: 190 DKQLSNREKEILRLIRQGFLSKEIAHQLGVSIYTVNNHRKNILSK 234 >gi|262173251|ref|ZP_06040928.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|261890609|gb|EEY36596.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 237 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D +LT RE E L + GK IA ++GIS TV Y A + K ++ I A Sbjct: 151 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 210 Query: 241 V 241 + Sbjct: 211 L 211 >gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 246 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 183 IDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 242 Query: 244 NI 245 + Sbjct: 243 GL 244 >gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G ++ EIA L + TV +++ ++ K + R A+ +A + Sbjct: 165 DLTPREHEVLVLVASGASNAEIAANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHG 224 Query: 245 IV 246 +V Sbjct: 225 VV 226 >gi|120401374|ref|YP_951203.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119954192|gb|ABM11197.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length = 392 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 157 DRLWEIGLLA--AYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGIS 213 D L E GL +A+ D G+ LT RE + + G ++ EIA L I+ Sbjct: 302 DELCESGLDTPRGAEADRCGDTDGQTGRPPVTLTEREADVFDLMVTGASNQEIADRLVIT 361 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 TV +++ I+RK R+ AIA+A+ Sbjct: 362 EGTVKSHVKHILRKYGAVNRAQAIAWALNGG 392 >gi|330811339|ref|YP_004355801.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379447|gb|AEA70797.1| Putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 208 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K ++ I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|299069878|emb|CBJ41160.1| putative transcription regulator protein LuxR [Ralstonia solanacearum CMR15] Length = 232 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F LT RE + ++ G IA LGISR+TV ++ + RKT T Sbjct: 169 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTH 216 >gi|229492601|ref|ZP_04386404.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229320587|gb|EEN86405.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 358 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E LT+++ G ++ EI L S TV ++ I+ K +R A A I Sbjct: 294 LTARELEVLTYLARGLSNAEIGRELHASHRTVATHVERILDKLDCHSRVAAAGIATAEGI 353 Query: 246 V 246 V Sbjct: 354 V 354 >gi|229821513|ref|YP_002883039.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567426|gb|ACQ81277.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 232 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 165 LAAYQANMFKSY--DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA + + F + DV G + + LT RE E + I+ G T E+A L IS TV ++ Sbjct: 148 LAGFVLDAFGAIGGDVATGDELDKLTAREREVMRLIARGYTYREVASELFISIKTVETHV 207 Query: 222 ASIMRKTATKTR 233 ++++RK +R Sbjct: 208 SAVLRKLQLSSR 219 >gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] Length = 209 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180 G D R LT AR + M+ +L+D EI L AA N+F + + Sbjct: 76 GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135 Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 196 RVAATIMYLEN 206 >gi|126650765|ref|ZP_01722981.1| two-component response regulator [Bacillus sp. B14905] gi|126592430|gb|EAZ86448.1| two-component response regulator [Bacillus sp. B14905] Length = 201 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L RE+ L + EG T+ EI+ L +++ T+ NY+++ ++K ++R A A Sbjct: 141 LNEREIAVLQLVKEGLTTHEISKQLFLTKGTIRNYLSTTIQKLQVESRQQAAQIA 195 >gi|3184128|emb|CAA05049.1| TDIR protein [Thauera aromatica] Length = 227 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L + G +S EIA +LGIS TV + I+ K K+ + + +R + Sbjct: 148 LSQREMEILDKVVAGSSSKEIAKLLGISYKTVEAHRGRIISKLGLKSTGDLMHFVMRGS 206 >gi|282878907|ref|ZP_06287671.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis ATCC 35310] gi|281298906|gb|EFA91311.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis ATCC 35310] Length = 313 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L IS NTV + +I RK + +G YA+ N+ Sbjct: 246 LSDREKEVVISLVQGMTNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVTNL 305 Query: 246 V 246 V Sbjct: 306 V 306 >gi|282898699|ref|ZP_06306687.1| Transcriptional Regulator with GAF sensor, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281196567|gb|EFA71476.1| Transcriptional Regulator with GAF sensor, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 216 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE+E +++G T+ EIA L IS+NTV + + +K R+ +A Sbjct: 161 LTARELEIAKLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVA 213 >gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 220 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE+E L ++ G T EIA L IS TV + ++++RKT T R Sbjct: 159 KLTRRELEVLRLLARGYTYKEIASELFISVKTVETHASNVLRKTQTSNR 207 >gi|256422989|ref|YP_003123642.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037897|gb|ACU61441.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 220 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ E + I+EG ++ EIA L IS TV N+ +I +K + I YA++N Sbjct: 153 KLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKLNLTGHNSLIKYAIKN 211 >gi|253699733|ref|YP_003020922.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251774583|gb|ACT17164.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L I+EG + A L I+ TV+ + IM+K ++ + YA+R Sbjct: 149 EVPLTPREREVLQLIAEGNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELTKYAIR 208 Query: 243 NNIV 246 ++ Sbjct: 209 EGLI 212 >gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 209 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|188995237|ref|YP_001929489.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC 33277] gi|188594917|dbj|BAG33892.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC 33277] Length = 199 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + + +G T+ EIA L +S +TV + +I +K + SG YA+ N + Sbjct: 132 LTNREKEIVVGVVKGMTNKEIAEELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKL 191 Query: 246 V 246 V Sbjct: 192 V 192 >gi|153870575|ref|ZP_01999948.1| regulatory protein, LuxR [Beggiatoa sp. PS] gi|152072960|gb|EDN70053.1| regulatory protein, LuxR [Beggiatoa sp. PS] Length = 210 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E ++EGK+ +EIA IL +S TV ++ I +K + S A+R Sbjct: 147 QLSPREFEVFLLLAEGKSVNEIAEILTLSSKTVGHHYTHIKKKLKISSISELTRLAIRGG 206 Query: 245 IV 246 ++ Sbjct: 207 VL 208 >gi|320532007|ref|ZP_08032900.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135771|gb|EFW27826.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 203 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + G + EIA L + TV NY++S + KT + R+ A A N Sbjct: 143 LTDREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201 >gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 209 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|53712701|ref|YP_098693.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60680860|ref|YP_211004.1| putative transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|253563324|ref|ZP_04840781.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|265762790|ref|ZP_06091358.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|52215566|dbj|BAD48159.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60492294|emb|CAH07059.1| putative transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|251947100|gb|EES87382.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263255398|gb|EEZ26744.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301162406|emb|CBW21951.1| putative transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 225 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 LL + N+ + VH +D LT E L I+ GKT+ EIA +S +T+N++ Sbjct: 133 LLLSGSGNVNTASAVHTFVPQEDRLLTPTEKIILKEIASGKTTKEIAAEKHLSFHTINSH 192 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +I RK A YA+R IV Sbjct: 193 RKNIFRKLGVNNVHEATKYAMRAGIV 218 >gi|15607336|ref|NP_214709.1| two component transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|31791373|ref|NP_853866.1| LuxR family two component transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121636107|ref|YP_976330.1| LuxR family two component transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148659959|ref|YP_001281482.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|224988580|ref|YP_002643267.1| putative two component transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260185058|ref|ZP_05762532.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis CPHL_A] gi|260203340|ref|ZP_05770831.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis K85] gi|289445726|ref|ZP_06435470.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis CPHL_A] gi|289568096|ref|ZP_06448323.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis T17] gi|289572775|ref|ZP_06453002.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289748671|ref|ZP_06508049.1| two component system transcriptional regulator [Mycobacterium tuberculosis T92] gi|289756260|ref|ZP_06515638.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289760298|ref|ZP_06519676.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289764311|ref|ZP_06523689.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|294994668|ref|ZP_06800359.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis 210] gi|297632675|ref|ZP_06950455.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN 4207] gi|297729649|ref|ZP_06958767.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN R506] gi|298527587|ref|ZP_07014996.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313656975|ref|ZP_07813855.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN V2475] gi|2909593|emb|CAA17317.1| POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|31616958|emb|CAD93065.1| PUTATIVE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|121491754|emb|CAL70216.1| Putative two component transcriptional regulatory protein (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148504111|gb|ABQ71920.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|224771693|dbj|BAH24499.1| putative two component transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289418684|gb|EFD15885.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis CPHL_A] gi|289537206|gb|EFD41784.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289541849|gb|EFD45498.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis T17] gi|289689258|gb|EFD56687.1| two component system transcriptional regulator [Mycobacterium tuberculosis T92] gi|289696847|gb|EFD64276.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289711817|gb|EFD75833.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|289715862|gb|EFD79874.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298497381|gb|EFI32675.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 211 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REV L +++G ++ ++AV L T+ N + I+ + + R+ A+A+A+R + Sbjct: 151 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|146279618|ref|YP_001169776.1| hypothetical protein Rsph17025_3602 [Rhodobacter sphaeroides ATCC 17025] gi|145557859|gb|ABP72471.1| hypothetical protein Rsph17025_3602 [Rhodobacter sphaeroides ATCC 17025] Length = 374 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + ++D+ W + F L+ RE E + G+T + A +S+ T+ N + S++RKT T Sbjct: 298 LLLTHDILW-RTFGLSARESELAMSLITGETIPDQAQRRKMSKQTLRNQMVSVLRKTETS 356 Query: 232 TRSGAIAYAVR 242 +S +A R Sbjct: 357 RQSQLVALLTR 367 >gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 280 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I++G T+ EIA L IS TV + ++IM K YA+R+ + Sbjct: 216 LTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGL 275 Query: 246 V 246 + Sbjct: 276 I 276 >gi|282859563|ref|ZP_06268668.1| hemerythrin HHE cation binding domain protein [Prevotella bivia JCVIHMP010] gi|282587791|gb|EFB92991.1| hemerythrin HHE cation binding domain protein [Prevotella bivia JCVIHMP010] Length = 318 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + + +G ++ EIA L IS NTV + +I +K + +G YA+ NN+ Sbjct: 251 LSDREKDVIVALVQGMSNKEIAEHLCISTNTVITHRRNIAKKLKIHSPAGLTIYAIVNNL 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT + G + EIA LG+S T +++ IM K A + R+ + A + + Sbjct: 155 LSDREREVLTLVGRGLNNTEIAESLGLSPLTAKTHVSRIMGKLAARDRAQLVIVAYESGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|91789884|ref|YP_550836.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91699109|gb|ABE45938.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 208 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+ECL+ +G+T+ E IL S TVN ++++ M K + AI A Sbjct: 148 LSPRELECLSLAFQGRTARESGDILVCSERTVNFHLSNAMAKLKVDNKLAAIQRA 202 >gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 225 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L + G T+ EIA L IS T ++ ++ K + R + A + Sbjct: 161 LTGREREVLALVGRGHTNGEIAAQLVISPATARTHVGRLLTKLGARDRVQLVVIAHETGL 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|297156374|gb|ADI06086.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 16/106 (15%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF------ELTGREVECLT 195 IGL+ + +G +L AA + + S D H +D LT RE E L Sbjct: 115 IGLVRVAAEGHTVLSP--------AAARRLVAASSDGHSARDRARRLVESLTEREAEVLA 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTA--TKTRSGAIAY 239 + EG ++ +I L +S T+ Y++ ++ K +T++G IA+ Sbjct: 167 GLGEGLSNAQIGARLYLSEATIKGYVSRLLDKLGCVNRTQAGLIAH 212 >gi|258592283|emb|CBE68592.1| Two component transcriptional regulator, LuxR family [NC10 bacterium 'Dutch sediment'] Length = 222 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L + EG T+ E A LG++ V + + +KT +TRS + A+ + Sbjct: 157 LTEREEQVLQAVFEGLTNKETAARLGVTEGAVKATLQHLFQKTGVRTRSQLVRVAIEGS 215 >gi|323528532|ref|YP_004230684.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385534|gb|ADX57624.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 210 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 39/75 (52%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +F++Y L+ RE + L ++ GK+ +EIA +S T++ + +M+K Sbjct: 134 VFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIADAFALSAKTISTHKMRLMQKLGLA 193 Query: 232 TRSGAIAYAVRNNIV 246 + I YA+R+ +V Sbjct: 194 NNADLIRYAIRHGLV 208 >gi|237801066|ref|ZP_04589527.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023923|gb|EGI03980.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] Length = 208 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN++V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNSLV 208 >gi|226364089|ref|YP_002781871.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242578|dbj|BAH52926.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 394 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT RE E ++ GK++ EIA L IS TV +++ I+RK RS AI Sbjct: 325 ELTMREREVFQLLAAGKSNTEIADELVISVFTVKSHVKKILRKLGAMNRSEAI 377 >gi|223936168|ref|ZP_03628081.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895030|gb|EEF61478.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+ + ++A LGIS T+ + +M K +G YA+ I Sbjct: 156 LTPREAEVLVLIAKGQPNKQMASELGISIKTIEKHRQQVMNKLNIHDIAGLTRYAISKGI 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|134099153|ref|YP_001104814.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911776|emb|CAM01889.1| transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 209 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE++ L +SEG IA L S TV N + + + R+ A++YA+R+ + Sbjct: 149 ITNREIDVLRMVSEGFDLKHIAQELHFSERTVKNVLYNFTNRFNLHNRAHAVSYAIRSGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|227818570|ref|YP_002822541.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36958825|gb|AAQ87250.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227337569|gb|ACP21788.1| transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 240 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT ++ + L + G + +IA L I+ TV ++ +IMRK +TR A+ +A Sbjct: 174 LTRQQAKILQLVCAGLMNKQIAYELSIAETTVKAHVTAIMRKLGVQTRMQAVLFA 228 >gi|91787783|ref|YP_548735.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91697008|gb|ABE43837.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 184 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 25/48 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + +G TS EI L IS TV Y A +MRK T Sbjct: 126 ELTAREREVAAHLMDGMTSKEIGRALVISHRTVEIYRARLMRKYKAST 173 >gi|78066966|ref|YP_369735.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77967711|gb|ABB09091.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 395 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E E + +G T DE A GI++NT ++ I KT TR + + N Sbjct: 331 FRLTPMETEIALLLVDGLTLDEAAAATGITKNTARAHLRGIFAKTGA-TRQAVLVKTLLN 389 Query: 244 NIV 246 ++V Sbjct: 390 SVV 392 >gi|34540945|ref|NP_905424.1| LuxR family transcriptional regulator [Porphyromonas gingivalis W83] gi|34397260|gb|AAQ66323.1| transcriptional regulator, LuxR family [Porphyromonas gingivalis W83] Length = 199 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + + +G T+ EIA L +S +TV + +I +K + SG YA+ N + Sbjct: 132 LTNREKEIVVGVVKGMTNKEIAEELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKL 191 Query: 246 V 246 V Sbjct: 192 V 192 >gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis FV-1] gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D106004] gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D182038] gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 209 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180 G D R LT AR + M+ +L+D EI L AA N+F + + Sbjct: 76 GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135 Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195 Query: 233 RSGA 236 R A Sbjct: 196 RVAA 199 >gi|326778212|ref|ZP_08237477.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326658545|gb|EGE43391.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A AY R Sbjct: 163 LTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 219 >gi|222081960|ref|YP_002541325.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726639|gb|ACM29728.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 244 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 26/35 (74%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+ RE++ L W++ GKT+ EIA IL IS+ +V+ Y Sbjct: 202 LSPREIDVLHWMARGKTAWEIAEILSISQKSVDFY 236 >gi|196033655|ref|ZP_03101067.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196044984|ref|ZP_03112217.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218902956|ref|YP_002450790.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225863697|ref|YP_002749075.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|228931489|ref|ZP_04094404.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229090808|ref|ZP_04222037.1| Response regulator [Bacillus cereus Rock3-42] gi|229121388|ref|ZP_04250618.1| Response regulator [Bacillus cereus 95/8201] gi|229184030|ref|ZP_04311244.1| Response regulator [Bacillus cereus BGSC 6E1] gi|300117584|ref|ZP_07055367.1| response regulator [Bacillus cereus SJ1] gi|195994089|gb|EDX58045.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196023986|gb|EDX62660.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218536231|gb|ACK88629.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225789961|gb|ACO30178.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|228599469|gb|EEK57075.1| Response regulator [Bacillus cereus BGSC 6E1] gi|228662077|gb|EEL17687.1| Response regulator [Bacillus cereus 95/8201] gi|228692511|gb|EEL46241.1| Response regulator [Bacillus cereus Rock3-42] gi|228828170|gb|EEM73890.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|298725019|gb|EFI65678.1| response regulator [Bacillus cereus SJ1] Length = 212 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMGSKEDECKIDTSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|149914980|ref|ZP_01903509.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp. AzwK-3b] gi|149811168|gb|EDM71005.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp. AzwK-3b] Length = 219 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE L +++GK++ ++A L IS TV + +I RK + +G YA+ + Sbjct: 150 QLTNREQTILLQLAQGKSNKDVAHTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHG 209 Query: 245 IV 246 ++ Sbjct: 210 VL 211 >gi|134101945|ref|YP_001107606.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|134101947|ref|YP_001107608.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914568|emb|CAM04681.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] gi|133914570|emb|CAM04683.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 150 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L +++G + EIA L S TV N + + + + R A+AYA+R + Sbjct: 90 LTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGV 149 Query: 246 V 246 + Sbjct: 150 I 150 >gi|118590980|ref|ZP_01548380.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118436502|gb|EAV43143.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 217 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I G+++ EIA LGIS TV+ + S+M+K + +A A++ + Sbjct: 151 LTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVPQLMAKALKEGM 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|116071221|ref|ZP_01468490.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116066626|gb|EAU72383.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 239 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 27/114 (23%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG-----------------------REVE 192 R+RL + G+L+ QA S +H D +TG RE + Sbjct: 115 RERLGDGGVLSVLQA--MDSDGIHM--DPTITGVCQQSRRRPSHGIAPPLSDVLTLREED 170 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G ++ EIA L ++ +T+ + + S++RK + R+ A+ A ++N+V Sbjct: 171 VLRGLCRGLSNQEIADQLHLAVDTIKHAVTSLLRKLEARDRTQAVLVAFQHNLV 224 >gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 215 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 35/54 (64%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++++G ++ EIA +L +S TV+ +++ I+ K +R+ A+ YA++ IV Sbjct: 159 VLQFMAQGYSNAEIARLLVVSNATVHTHVSRILSKLNVSSRTQAVLYALKRGIV 212 >gi|312959247|ref|ZP_07773765.1| two component transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311286507|gb|EFQ65070.1| two component transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 210 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K ++ I A RN + Sbjct: 150 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|291009365|ref|ZP_06567338.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 214 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE++ L +SEG IA L S TV N + + + R+ A++YA+R+ + Sbjct: 154 ITNREIDVLRMVSEGFDLKHIAQELHFSERTVKNVLYNFTNRFNLHNRAHAVSYAIRSGL 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|282860465|ref|ZP_06269531.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564201|gb|EFB69737.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 251 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G LT RE E L ++ + IA+ LG+S TV ++I +MRK A +R+ Sbjct: 140 GSLSPLTQREREVLALVATQPDNTAIALALGVSPLTVKSHINRVMRKLAVSSRA 193 >gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 216 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +++G +S +IA L IS TV N++ + +RK R YA+ + + Sbjct: 154 LTERETQVLREVAKGLSSRQIANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213 >gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] Length = 209 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A + N Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATILYLEN 206 >gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159] gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159] Length = 213 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D L+ ++ L I++G ++ EIA L +S NTV Y+ ++R+ + R A+ A Sbjct: 149 DIPLSPHQLSVLRLIAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNRLEAVMIA 206 >gi|218506954|ref|ZP_03504832.1| transcriptional activator protein [Rhizobium etli Brasil 5] Length = 179 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++CL + G + +I L IS + V Y+AS RK T S A+A A Sbjct: 119 LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 173 >gi|206560622|ref|YP_002231387.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198036664|emb|CAR52562.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 395 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E E + +G T DE A GI++NT ++ I KT TR + + N Sbjct: 331 FRLTPMETEIALLLVDGLTLDEAAAATGITKNTARAHLRGIFAKTGA-TRQAVLVKTLLN 389 Query: 244 NIV 246 ++V Sbjct: 390 SVV 392 >gi|302036834|ref|YP_003797156.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|190343248|gb|ACE75636.1| response regulator [Candidatus Nitrospira defluvii] gi|300604898|emb|CBK41231.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + + I+ GK+ +IA L + +T+N Y A I+ K K + YA+ N Sbjct: 148 QLSDREYQVMCLIAVGKSLKDIADDLCVGVSTINTYRARILEKMQLKNNTELTHYAIENR 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 221 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I+ G ++ EIA L IS TV N++ +I+ + R+ A +A Sbjct: 155 ELTPREKEVLRLIATGASNREIAQELYISEGTVKNHVTNILNTLNLRDRTQAAIWA 210 >gi|33594674|ref|NP_882318.1| putative regulatory protein [Bordetella pertussis Tohama I] gi|33598469|ref|NP_886112.1| putative regulatory protein [Bordetella parapertussis 12822] gi|33603411|ref|NP_890971.1| putative regulatory protein [Bordetella bronchiseptica RB50] gi|33564750|emb|CAE44075.1| putative regulatory protein [Bordetella pertussis Tohama I] gi|33574598|emb|CAE39247.1| putative regulatory protein [Bordetella parapertussis] gi|33577535|emb|CAE34800.1| putative regulatory protein [Bordetella bronchiseptica RB50] gi|332384085|gb|AEE68932.1| putative regulatory protein [Bordetella pertussis CS] Length = 115 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE + +++ GK + IA+ LGISR T + A I RK Sbjct: 40 LTARERQVAAYLAAGKANKVIAIDLGISRRTAEAHRARIFRK 81 >gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 216 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E L I+ G ++ +IA G+S TV +++ ++ K ++R+ A YA+R+ I Sbjct: 151 LTPKETIVLQLIARGCSNRDIAQDQGVSEATVKTHVSRLLSKLGLESRTQAALYALRHGI 210 >gi|167577917|ref|ZP_02370791.1| transcription regulator LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616043|ref|ZP_02384678.1| transcription regulator LuxR family protein [Burkholderia thailandensis Bt4] Length = 255 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201 Query: 234 SGAIAYAV 241 + I A Sbjct: 202 NELIDLAA 209 >gi|158334970|ref|YP_001516142.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305211|gb|ABW26828.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 169 QANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 QAN + V D +LT E + + +++G ++ EIA L +S+ TV +++++++ K Sbjct: 137 QANSLEGELSVQVPFDVDLTPTETKVIQLVAKGMSNREIADDLSVSQRTVESHVSNMLGK 196 Query: 228 TATKTRSGAIAYAVRNNIV 246 T R+ +A+ +V Sbjct: 197 TGLNNRTELARWAIEQRMV 215 >gi|77460736|ref|YP_350243.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384739|gb|ABA76252.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 208 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K ++ I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|329935679|ref|ZP_08285485.1| putative two-component system response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329304857|gb|EGG48729.1| putative two-component system response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE L ++ G + EIA LGI+ TV +++ +++RK A + R Sbjct: 158 LTARERSVLGLLASGLDNTEIAADLGITVGTVKSHVNAVLRKLALRDR 205 >gi|315181979|gb|ADT88892.1| two component transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 207 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L +S+G T+ EIA + +S T++ Y +M K + + I +A RN + Sbjct: 147 LSDREMMVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGV 206 Query: 246 V 246 V Sbjct: 207 V 207 >gi|260222417|emb|CBA31960.1| hypothetical protein Csp_D29730 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 230 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ GK +IA L +S TV+ Y A ++ K A + YA+RN + Sbjct: 170 LSERELQTLIKIASGKKLSDIAEELMLSPKTVSVYRARLLEKLALSNNAELTVYAIRNAL 229 Query: 246 V 246 V Sbjct: 230 V 230 >gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++EG+++ EIA L I +TV +++ M K + R + +A +N + Sbjct: 155 LTAREKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNGL 214 >gi|170740380|ref|YP_001769035.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194654|gb|ACA16601.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 244 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S + G+ ELT R+ + L + EGK++ EIA L + TV ++A+++R + Sbjct: 173 SESLRPGRTVELTPRQRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLRSLGVQ 229 >gi|167755832|ref|ZP_02427959.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402] gi|167704771|gb|EDS19350.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402] Length = 67 Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E + + +++ +IA LGIS TV N+I+++++K +R A+ Sbjct: 5 LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 56 >gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1] gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1] Length = 220 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E + I+ G ++ EIA L ++ TV ++ I+ K + R+ A +A + Sbjct: 154 DLTERETEVVALIAHGLSNAEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESG 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|311747217|ref|ZP_07721002.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] gi|126578929|gb|EAZ83093.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] Length = 254 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E++ L ISEG S IA L +S +T+N + ++++KT T S + A Sbjct: 194 LSSKEIKILKMISEGMLSKHIAEKLNLSFHTINTHRRNMLKKTKCNTSSEMVNLA 248 >gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 200 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +T RE + L ++ G T+ EIA L IS +TV ++AS+M K + R Sbjct: 136 VTAREEQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNR 183 >gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + G + EIA L + TV NY++S + KT + R+ A A N Sbjct: 143 LTDREKEVLQAAATGADAREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201 >gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 207 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 142 KLTRREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 200 Query: 245 IV 246 I Sbjct: 201 IA 202 >gi|254693110|ref|ZP_05154938.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 3 str. Tulya] gi|261213346|ref|ZP_05927627.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260914953|gb|EEX81814.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 213 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ LT ++EG + +IA LG+S TV +++++++K +R+ A+ Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200 >gi|239980726|ref|ZP_04703250.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 204 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G D L+G +E L I EG T+ I L ++ T+ NY+++++ K + RS A Sbjct: 133 GDDDRLSGLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMERRSQAA 192 Query: 238 AYAVR 242 AY R Sbjct: 193 AYVAR 197 >gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 214 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REVE L + G ++ EIA L IS TV N+++ + K + R A+ +A+++ Sbjct: 143 LSTREVEILDCMVRGLSNREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQHG 201 >gi|222080193|ref|YP_002540056.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738838|gb|ACM39617.1| transcriptional regulator [Agrobacterium vitis S4] Length = 227 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ GKT +EIA + G+ N+V + M++ ++++ A A+R + Sbjct: 167 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 226 Query: 246 V 246 + Sbjct: 227 I 227 >gi|50120831|ref|YP_049998.1| transcriptional regulator NarP [Pectobacterium atrosepticum SCRI1043] gi|49611357|emb|CAG74804.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum SCRI1043] Length = 210 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L ++ G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 150 LTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAA 200 >gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 213 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E LT ++ G T+ E A L IS TV ++ + K R+ A+A A Sbjct: 148 LSQRELEVLTLVARGSTNREAAAQLFISEATVKTHLLHVYAKLGVNDRAAAVAVA 202 >gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2] gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2] Length = 197 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L GKT+ EI+ L +S TV NYI+ IM+K K R A A Sbjct: 137 LTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIA 191 >gi|316934925|ref|YP_004109907.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602639|gb|ADU45174.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 246 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 37/60 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT ++E L +++ GK++ +IA +S TV + +A I++K R+ A +A+RN+ Sbjct: 178 ELTPSQLELLPYLASGKSNRQIAKERDMSVFTVKSQVAGIIQKLNVANRTQAALFAMRNS 237 >gi|282898145|ref|ZP_06306138.1| Transcriptional Regulator with GAF sensor, LuxR family [Raphidiopsis brookii D9] gi|281196969|gb|EFA71872.1| Transcriptional Regulator with GAF sensor, LuxR family [Raphidiopsis brookii D9] Length = 216 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE+E +++G T+ EIA L IS+NTV + + +K R+ +A Sbjct: 161 LTARELEIAQLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVA 213 >gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] Length = 209 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L+ G +++EIA LGI TV +++ S+M K + R A+ A + Sbjct: 157 LTARERDVLSLTGRGLSNNEIATELGIGYETVKSHLRSVMTKLRLRDRVHAVIVAYETGL 216 Query: 246 V 246 + Sbjct: 217 L 217 >gi|237734801|ref|ZP_04565282.1| transcriptional regulator [Mollicutes bacterium D7] gi|229382129|gb|EEO32220.1| transcriptional regulator [Coprobacillus sp. D7] Length = 71 Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E + + +++ +IA LGIS TV N+I+++++K +R A+ Sbjct: 9 LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 60 >gi|228990797|ref|ZP_04150762.1| Response regulator [Bacillus pseudomycoides DSM 12442] gi|228996897|ref|ZP_04156530.1| Response regulator [Bacillus mycoides Rock3-17] gi|229004572|ref|ZP_04162310.1| Response regulator [Bacillus mycoides Rock1-4] gi|228756613|gb|EEM05920.1| Response regulator [Bacillus mycoides Rock1-4] gi|228762776|gb|EEM11690.1| Response regulator [Bacillus mycoides Rock3-17] gi|228769323|gb|EEM17921.1| Response regulator [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ ++ + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLLENKEEESKIDKTLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI SI+ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205 >gi|218660024|ref|ZP_03515954.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 118 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE++CL + G + +I+ L IS + V Y+AS RK T S A+A A Sbjct: 57 HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 112 >gi|187929064|ref|YP_001899551.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725954|gb|ACD27119.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 181 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 29/60 (48%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ H LT RE + + EGKTS +I L IS TV Y A +M+K A T Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLEISPRTVEIYRARLMKKYAANT 170 >gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580] gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580] Length = 200 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L GKT+ EI+ L +S TV NYI+ IM+K K R A A Sbjct: 140 LTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIA 194 >gi|328948798|ref|YP_004366135.1| LuxR family transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449122|gb|AEB14838.1| two component transcriptional regulator, LuxR family [Treponema succinifaciens DSM 2489] Length = 202 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT +E E L ISE ++ IA LGIS+ TV NY++ I K K R Sbjct: 148 LTKKERELLDLISEHLPNEIIASRLGISKRTVENYVSRIFDKFNVKNR 195 >gi|326331183|ref|ZP_08197479.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325951078|gb|EGD43122.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E L I EG T+ EIA + ++ TV NY++SI+ K + R+ A A Sbjct: 156 LTPQEKRLLALIGEGLTNREIAGRMFLAEKTVKNYVSSILAKLGVQRRTQAALMA 210 >gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 218 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QA +YD LT RE E + + EG T+ E+A L IS T ++ ++MRK Sbjct: 147 QAAPANAYD-------NLTAREREVMRMVVEGLTTKEVAEALAISVKTAEHHRCNLMRKL 199 Query: 229 ATKTRSGAIAYAVRNNIV 246 + + YA R ++ Sbjct: 200 GLQNSVELVRYASRLGLI 217 >gi|264680026|ref|YP_003279935.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262210541|gb|ACY34639.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 161 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + ++ G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 99 QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 158 Query: 245 IV 246 ++ Sbjct: 159 LI 160 >gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] Length = 223 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + + G ++ EIA L +S NTV ++ ++ +K K R A+ +A +NN Sbjct: 158 KLTRREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216 Query: 245 IV 246 I Sbjct: 217 IA 218 >gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 217 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + + EG +++EIA L +S T +++ M K + R+ + +A R + Sbjct: 156 LTEREREVVGLVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|218886702|ref|YP_002436023.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757656|gb|ACL08555.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 236 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + +++G T EIA ++ +S TV+ Y MRK ++ + +A+R+ + Sbjct: 175 LSAREYEVIARLAQGATVAEIARVMNLSGKTVSTYKTRAMRKLNITNQAELLRFAMRHGL 234 >gi|91204580|emb|CAJ70808.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 210 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + + L RE E + + + ++ EIA+ L +S NT+ Y+ +MRK +R+G I+ Sbjct: 141 RKWHLNRREQEIVQLLLDDHSNKEIALNLNLSYNTIKGYLRLLMRKLDVNSRAGIIS 197 >gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family [Actinobacillus succinogenes 130Z] Length = 209 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 179 HWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H KD + LT RE++ L I+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 140 HASKDPIYSLTDREMDVLQQIATGLSNKQIAGKLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|53722189|ref|YP_111174.1| response regulator protein [Burkholderia pseudomallei K96243] gi|76819050|ref|YP_335286.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|126443269|ref|YP_001062630.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126458472|ref|YP_001075585.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134283397|ref|ZP_01770097.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 305] gi|167723630|ref|ZP_02406866.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167742598|ref|ZP_02415372.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167819761|ref|ZP_02451441.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167828147|ref|ZP_02459618.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167849611|ref|ZP_02475119.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167898207|ref|ZP_02485609.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167906569|ref|ZP_02493774.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167914925|ref|ZP_02502016.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922765|ref|ZP_02509856.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217418450|ref|ZP_03449957.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200233|ref|ZP_03795778.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237509813|ref|ZP_04522528.1| response regulator receiver domain protein [Burkholderia pseudomallei MSHR346] gi|242313775|ref|ZP_04812792.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254190252|ref|ZP_04896761.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254193436|ref|ZP_04899870.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254264632|ref|ZP_04955497.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300511|ref|ZP_04967957.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|52212603|emb|CAH38629.1| putative response regulator protein [Burkholderia pseudomallei K96243] gi|76583523|gb|ABA52997.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|126222760|gb|ABN86265.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 668] gi|126232240|gb|ABN95653.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134245146|gb|EBA45240.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 305] gi|157810287|gb|EDO87457.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937929|gb|EDO93599.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169650189|gb|EDS82882.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|217397754|gb|EEC37769.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|225927741|gb|EEH23783.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|235002018|gb|EEP51442.1| response regulator receiver domain protein [Burkholderia pseudomallei MSHR346] gi|242137014|gb|EES23417.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254215634|gb|EET05019.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 215 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y A I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKL 208 >gi|229818787|ref|YP_002880313.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564700|gb|ACQ78551.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 203 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D LT RE + L + G T ++A +S TV NY++S + KT +TR+ A Sbjct: 140 DSPLTERERDVLLAAASGGTVADVARATHLSEGTVRNYLSSAIGKTGARTRAEA 193 >gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] Length = 209 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens] Length = 244 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L +S G T E++ LGIS TV +I + +RK AI+ A+ N+ Sbjct: 169 ITPRETEVLFLVSRGNTYKEVSRTLGISEATVKFHINNSVRKLNVINSRHAISKALELNL 228 >gi|121605553|ref|YP_982882.1| putative PAS/PAC sensor protein [Polaromonas naphthalenivorans CJ2] gi|120594522|gb|ABM37961.1| transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 184 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 24/48 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE E + G TS EI L IS TV Y A +MRK T Sbjct: 125 ELTAREREVAAHLMRGLTSKEIGRALAISHRTVEIYRARLMRKFKAST 172 >gi|119714214|ref|YP_919356.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119526123|gb|ABL79493.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 567 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + EG ++ EIA L IS T +++ +I+ K ++R+ A AYA+ + + Sbjct: 497 LSRREQEVLGLVVEGLSNAEIAERLFISVKTAGHHVGNILTKLGVRSRTEATAYALLHPV 556 Query: 246 V 246 Sbjct: 557 A 557 >gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + S +G +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + Sbjct: 147 LMPSAQAAYG---DLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 204 DRTQAAVFAYEARLV 218 >gi|254491454|ref|ZP_05104633.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224462932|gb|EEF79202.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 214 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE E ++EGK D+IA L I + TV NY S+ +K Sbjct: 151 LTSREFEVFRLLAEGKLVDDIASRLNIGQKTVANYQTSLKQK 192 >gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 238 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E + + G ++ EIA L +S +TV +++ +I RK R A+ +A +N Sbjct: 163 LTHRELEIIGLLGTGASNTEIADQLFVSEHTVKSHLYNIFRKIKVHNRIQAMNWARQN 220 >gi|85705256|ref|ZP_01036355.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] gi|85670129|gb|EAQ24991.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] Length = 215 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE L +++GK++ ++A L IS TV + +I RK + +G YA+ + Sbjct: 147 QLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYALEHG 206 Query: 245 IV 246 ++ Sbjct: 207 VL 208 >gi|325263089|ref|ZP_08129824.1| transcriptional regulatory protein DegU [Clostridium sp. D5] gi|324031482|gb|EGB92762.1| transcriptional regulatory protein DegU [Clostridium sp. D5] Length = 243 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K + LT REV + ++ + KT+ EIA L +S TV ++++++RK K R Sbjct: 175 KKYGLTEREVSIIDFLMKRKTNIEIAGSLCLSEKTVKTHVSNVIRKMNVKNR 226 >gi|319795110|ref|YP_004156750.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597573|gb|ADU38639.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 155 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE++ L +S+G ++ IA L S NT++ I SI RK +R+ A+ A+ Sbjct: 84 NVSLSPRELQVLQLVSQGLSNRRIAEALSRSANTIDTQIKSIYRKLDVNSRTRAVRAAME 143 Query: 243 NNIV 246 ++ Sbjct: 144 QGLL 147 >gi|307149920|ref|YP_003890963.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986720|gb|ADN18598.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 204 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ +E + L ++S G + EIA L IS NT+ NY+ + K K ++ + A+R + Sbjct: 143 ISSQEQKMLHYLSYGYSYTEIAEALDISLNTLKNYMTDLREKLNAKDKTHLVVIALRTGL 202 Query: 246 V 246 V Sbjct: 203 V 203 >gi|291298065|ref|YP_003509343.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567285|gb|ADD40250.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 204 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 28/55 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L+ G T EIA L +S TV NY+A+ K + R AI A Sbjct: 144 LTAREREVLSITHGGATPKEIASKLQLSVGTVRNYLANACAKLGARNRIEAIRVA 198 >gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 210 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT E++ + +++ G + EIA L +S+ TV +++++++ KT R+ +A+ Sbjct: 147 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 206 Query: 243 NNI 245 N + Sbjct: 207 NQM 209 >gi|196231881|ref|ZP_03130737.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224003|gb|EDY18517.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 195 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L I+EG ++ E+A + I+ TV ++ A +M+K + YAVR + Sbjct: 131 LTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQVMQKLGMHDVATLTRYAVRMGL 190 Query: 246 V 246 V Sbjct: 191 V 191 >gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 204 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAY 239 +LT RE E L +++GK++ EIA L I TV ++ ++ RK A +T++ +AY Sbjct: 143 KLTKRECEVLKGLTKGKSNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQAALMAY 199 >gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I G ++ EIA L I+R TV ++ I+R+ R+ A+ AV+ I Sbjct: 163 LSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRGI 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|58425447|gb|AAW74484.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1005 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A A Sbjct: 932 RELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQA 983 >gi|88861227|ref|ZP_01135860.1| putative transcriptional regulator, LuxR family protein [Pseudoalteromonas tunicata D2] gi|88816820|gb|EAR26642.1| putative transcriptional regulator, LuxR family protein [Pseudoalteromonas tunicata D2] Length = 218 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%) Query: 150 KG-RIILRDRLWEIGLLAAYQANMF---KSYDVHWGKD------------FELTGREVEC 193 KG R++L ++LW Y+ N+ S +H+ KD LT RE Sbjct: 110 KGIRLLLDNQLW-------YRRNIMCNALSRLLHFNKDNILQLTDTLAEPISLTKREKAI 162 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + +S+G + EIA L IS +TV ++ S RKT + R +++A +N Sbjct: 163 IVLMSKGCKNKEIADELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] Length = 209 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G ELT RE E L I++G ++ EIA L ++ +T+ +++ ++ K + R+ A +A Sbjct: 162 GAYGELTERETEVLILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFA 221 Query: 241 VRNNIV 246 +V Sbjct: 222 YEARLV 227 >gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] Length = 209 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|319794782|ref|YP_004156422.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597245|gb|ADU38311.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 235 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Query: 162 IGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 +G +AA Q ++ + D LT RE + L +S+G ++ ++A L ISR TV Sbjct: 148 LGWIAAQQTSLSAVLASDAPSPLPVALTPRERKILELVSQGLSNRDMAESLSISRLTVEC 207 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 + +I RK A +R+ A+ R+ ++ Sbjct: 208 HTKNIYRKLAVTSRTEAVFQGRRHGLL 234 >gi|317124082|ref|YP_004098194.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588170|gb|ADU47467.1| regulatory protein LuxR [Intrasporangium calvum DSM 43043] Length = 336 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E++ R+ E L ++ G IA LGI+ TV I +MR+ T+TR GA AV+ Sbjct: 273 EISDRDREILGLMAAGLKDRAIARSLGITERTVGRRINELMRRLDTETRFGAGVRAVQRG 332 >gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis C231] gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis I19] Length = 208 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT RE+E I+ G+T+ EIA L IS +TV ++A I + + R Sbjct: 142 SDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNR 193 >gi|282858615|ref|ZP_06267777.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] gi|282588619|gb|EFB93762.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] Length = 214 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT E E L I+ G T+ EIA S +TVN + +I RK + + A YA+R+ Sbjct: 145 FKLTKTETEILIDIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLSVNNANEATRYALRS 204 Query: 244 NIV 246 ++ Sbjct: 205 GLI 207 >gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 216 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ ELT RE + L ++ G ++ EIA L +S TV ++++ I+ K + R A+ A Sbjct: 150 GRLDELTERERDVLVLLARGHSNAEIAGELYVSAATVKSHVSHILAKLEVRDRVQAVILA 209 Query: 241 VRNNIV 246 N ++ Sbjct: 210 FENGLM 215 >gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] Length = 234 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G + E+A LG+S TV ++A I+ K + R A+ A R + Sbjct: 157 LTPRERDVLRLLAGGLNNAELADHLGLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|254229254|ref|ZP_04922672.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262393135|ref|YP_003284989.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25] gi|151938178|gb|EDN57018.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262336729|gb|ACY50524.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25] Length = 214 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ ++A L +S T+ +++ I +K + K R AIA+A +N Sbjct: 153 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211 >gi|82701299|ref|YP_410865.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409364|gb|ABB73473.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 79 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + W+ +GKT+ EI IL IS TV N++ I +K R+ A Sbjct: 1 MDWVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQA 43 >gi|329945858|ref|ZP_08293545.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528306|gb|EGF55284.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 223 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E + ++EG + E+A L +S TV N+I++I+ K + R+ Sbjct: 162 LTDREYEVVEAVAEGLDNGEVAARLFMSEGTVRNHISAILAKLGLRNRT 210 >gi|296159395|ref|ZP_06842220.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295890379|gb|EFG70172.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 493 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ RE E L IS G ++ E+A L +S +TV ++ S+ RK TR+ A Sbjct: 433 LSPREAEVLKHISLGASNKEVARALELSPSTVRTHVESVFRKLECSTRAAA 483 >gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22] gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E ++ +EG ++DEIA L +S TV ++ M K + R+ + A ++ + Sbjct: 159 LTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|28899484|ref|NP_799089.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308094736|ref|ZP_05891637.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308095423|ref|ZP_05905792.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308125607|ref|ZP_05776200.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|28807720|dbj|BAC60973.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|308087209|gb|EFO36904.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308093073|gb|EFO42768.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308111203|gb|EFO48743.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] Length = 214 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ ++A L +S T+ +++ I +K + K R AIA+A +N Sbjct: 153 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211 >gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917] gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917] Length = 250 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ + Sbjct: 189 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQHRL 248 Query: 246 V 246 V Sbjct: 249 V 249 >gi|332881678|ref|ZP_08449326.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680317|gb|EGJ53266.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 326 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 180 WGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +G+D L+ RE E + + +G ++ EIA L IS NTV + +I RK + +G Sbjct: 250 YGEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGL 309 Query: 237 IAYAVRNNIV 246 YA+ N ++ Sbjct: 310 TIYAIVNGLI 319 >gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces oris K20] Length = 203 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + G + EIA L + TV NY++S + KT + R+ A A N Sbjct: 143 LTEREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201 >gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 234 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++EG ++ EIA +S TV ++ I+ K + R A+ YA Sbjct: 165 DLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 224 Query: 245 IV 246 +V Sbjct: 225 LV 226 >gi|239834753|ref|ZP_04683081.1| Glycerone kinase [Ochrobactrum intermedium LMG 3301] gi|239822816|gb|EEQ94385.1| Glycerone kinase [Ochrobactrum intermedium LMG 3301] Length = 693 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIAEIMGISRATVNSYLADARSRGIVNISIEPARLGSLAIA 86 >gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 211 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE+E L+ +++G ++ EIA L IS TV ++ K R+ A+ A+ Sbjct: 144 DESLSTRELEVLSLVAKGLSNKEIARELKISEATVKTHLLHTFGKLGVDDRTAAVTVALE 203 Query: 243 NNIV 246 I+ Sbjct: 204 RGIL 207 >gi|254252667|ref|ZP_04945985.1| Response regulator [Burkholderia dolosa AUO158] gi|124895276|gb|EAY69156.1| Response regulator [Burkholderia dolosa AUO158] Length = 222 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + FEL T RE E L+++ G + +IA LG+S TV + AS+MRK Sbjct: 149 QSFELLTRREREVLSYVISGALNKQIASHLGLSLITVKQHRASVMRK 195 >gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 210 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----NMFK------ 174 G+D R LT +R + ++ +L+D EI L +QA N+F Sbjct: 77 GVDARIIILTVSDSRSDVYALVDAGADGYLLKDSEPEILLSQIHQAASGKNVFSDTISEY 136 Query: 175 -SYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S F +LT RE++ L ++ G ++ +IA L IS TV +I +++RK ++ Sbjct: 137 LSSRTELTDPFADLTERELDVLQEVARGLSNKQIASQLHISEETVKVHIRNLLRKLDVRS 196 Query: 233 RSGAIAYAVRN 243 R A + N Sbjct: 197 RVAATVLYLEN 207 >gi|222080291|ref|YP_002540155.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738936|gb|ACM39715.1| transcriptional regulator [Agrobacterium vitis S4] Length = 230 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ GKT +EIA + G+ N+V + M++ ++++ A A+R + Sbjct: 170 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRRL 229 Query: 246 V 246 + Sbjct: 230 I 230 >gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE+E L ++EGK++ EIA L I+ T+ ++ ++ RK R+ A Sbjct: 144 LTKREMEVLKGLTEGKSNKEIARDLEITEPTIKLHVKTLYRKLDVNNRTQA 194 >gi|331697120|ref|YP_004333359.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951809|gb|AEA25506.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 931 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E T ++EG+T+ EIA L +S TV +++A+++ K R+ Sbjct: 870 LTPREREITTLLAEGRTNREIAGRLVLSERTVESHVANVLGKLGLARRA 918 >gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 201 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D LT RE E L G+++ EIA L ++ TV NY++ ++K +TR A A Sbjct: 137 EDNPLTERETEVLRLSHAGRSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERA 195 >gi|296130719|ref|YP_003637969.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022534|gb|ADG75770.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 252 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G+ LTG RE + L + +G + EIA L S TV + + R+ + R+ A+ Sbjct: 184 GQVLALTGVDERERQVLRLLGDGADTREIARRLSYSERTVKVVVQDLTRRFGLRNRTHAV 243 Query: 238 AYAVRNNIV 246 A+AVR+ ++ Sbjct: 244 AFAVRHGLI 252 >gi|108800345|ref|YP_640542.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869473|ref|YP_939425.1| response regulator receiver protein [Mycobacterium sp. KMS] gi|126435968|ref|YP_001071659.1| response regulator receiver protein [Mycobacterium sp. JLS] gi|108770764|gb|ABG09486.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119695562|gb|ABL92635.1| response regulator receiver protein [Mycobacterium sp. KMS] gi|126235768|gb|ABN99168.1| response regulator receiver protein [Mycobacterium sp. JLS] Length = 542 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 186 LTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L I+ +G ++ ++A + IS TV ++A+I K +R+ A+A+A ++N Sbjct: 481 LTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANIYLKLQVSSRAAAVAWAHQHN 540 Query: 245 IV 246 I Sbjct: 541 IA 542 >gi|311898017|dbj|BAJ30425.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 104 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E + +G ++ EIA L +S +TV ++A I+ KT +TR+ A A R Sbjct: 32 ELTAREREVFDLLGKGLSNAEIADRLVVSGSTVKAHLARILIKTGAETRTRAALMAQR 89 >gi|293115534|ref|ZP_06604529.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM 2876] gi|292809348|gb|EFF68553.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM 2876] Length = 211 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +T +E E + +++G ++ EIA L + TV NY +SI+ K + R+ + Y +N Sbjct: 154 ITEKEFEIIKLVADGLSNKEIASRLYLGEGTVRNYFSSILDKLELRDRTQLVVYYYKN 211 >gi|320007676|gb|ADW02526.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 281 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REV+ + ++ G T+ A LG+ TV +Y+ S MRK TR A+ A R + Sbjct: 220 LAPREVDVVACVASGATNAVAAERLGLRPETVKSYLRSAMRKLGAHTRLEAVVAARRAGL 279 Query: 246 V 246 + Sbjct: 280 L 280 >gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 226 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+GRE E L ++EG ++ EI L IS TV ++ I K + R+ A A +R+ Sbjct: 164 QLSGREQEILALLAEGLSNKEIGSKLNISFTTVRTHLMHIYEKLHVRCRTEAAAKYLRS 222 >gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916] Length = 249 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 T RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 186 LSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQH 245 Query: 244 NIV 246 ++V Sbjct: 246 HLV 248 >gi|27383173|ref|NP_774702.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27356347|dbj|BAC53327.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 206 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +A F + +++ RE+E L + G E+A LGIS TV N +++ K Sbjct: 129 EATTFAGAAIKASPLTQMSARELEILRLLGRGDRISEVAAELGISYKTVANITSALKTKL 188 Query: 229 ATKTRSGAIAYAV 241 K+ S + AV Sbjct: 189 GAKSHSDLVRIAV 201 >gi|269127816|ref|YP_003301186.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312774|gb|ACY99148.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 31/58 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE+E L EG + +IA L ++ TV N+++ I RK + R AI A Sbjct: 138 DSPLTPRELEVLRLAGEGASVAQIADTLVLTIGTVRNHLSRINRKIGARNRVHAIRIA 195 >gi|239995472|ref|ZP_04715996.1| putative regulator in two-component regulatory system ; LuxR family protein [Alteromonas macleodii ATCC 27126] Length = 211 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 34/53 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT ++++ L+++ G + +IA + ++ T+ +I++I+RK TR+ A+ Sbjct: 150 ELTPKQIQVLSYLRAGLMNKQIAHEMNVTEATIKAHISAILRKLEINTRTQAV 202 >gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 226 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ EIA L +S TV ++ +++ K + R A+ YA Sbjct: 160 LTEREREVLKHVARGLSNAEIARELVVSETTVKTHVGNVLAKLGLRDRVQAVVYA 214 >gi|196041201|ref|ZP_03108496.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|196027909|gb|EDX66521.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] Length = 212 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMGSKEDECKIDKSLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|15839575|ref|NP_334612.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|13879689|gb|AAK44426.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] Length = 256 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L REV L +++G ++ ++AV L T+ N + I+ + + R+ A+A+A+R + Sbjct: 196 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 255 Query: 246 V 246 + Sbjct: 256 I 256 >gi|332298307|ref|YP_004440229.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] gi|332181410|gb|AEE17098.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] Length = 230 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F+L+ +E + + +GK++ EIA I TV NYI++I K T R +A A Sbjct: 165 FDLSPKERTIIKHMLQGKSNKEIAADANIGEQTVRNYISAIYAKLGTSDRRTLLAKA 221 >gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 214 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +DF LT +E + L ++ GK+ IA +L IS TV ++ +I K + + A+A A+ Sbjct: 148 EDFNLTEQERKVLHYLVAGKSYKMIADVLFISLETVKTHLRNIYLKLQVHSGTEAVAKAL 207 Query: 242 RNNI 245 ++ I Sbjct: 208 KHKI 211 >gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT RE+E I+ G+T+ EIA L IS +TV ++A I + + R Sbjct: 142 SDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNR 193 >gi|297161212|gb|ADI10924.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ Sbjct: 162 LTGREREVLVQVAGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRA 210 >gi|258652603|ref|YP_003201759.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555828|gb|ACV78770.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 363 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+GRE++ L ++G+ +DEIA L +S TV ++ +I K + +S A R Sbjct: 303 LSGRELQVLGLAAQGRDNDEIARRLTLSVRTVERHLQNIYAKLEVQGKSARTAAVAR 359 >gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 35/76 (46%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G +A F++ GK L RE + LT ++ G EI LG+S TV Y+ Sbjct: 128 GHIARKVVGYFRTLGPATGKAKPLAPREEQVLTLLASGYLYKEIGAKLGLSVETVRTYVK 187 Query: 223 SIMRKTATKTRSGAIA 238 + K ++R A+A Sbjct: 188 NACTKMHVRSRIEAVA 203 >gi|163843876|ref|YP_001628280.1| 3,4-dihydroxy-2-butanone kinase [Brucella suis ATCC 23445] gi|163674599|gb|ABY38710.1| 3,4-dihydroxy-2-butanone kinase [Brucella suis ATCC 23445] Length = 694 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|148560164|ref|YP_001258354.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC 25840] gi|148371421|gb|ABQ61400.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC 25840] Length = 213 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ LT ++EG + +IA LG+S TV +++++++K +R+ A+ Sbjct: 149 LTPQQTRVLTMLTEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200 >gi|78184142|ref|YP_376577.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168436|gb|ABB25533.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 239 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 27/114 (23%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG-----------------------REVE 192 R+RL + G+L+ QA S +H D +TG RE + Sbjct: 115 RERLGDGGVLSVLQA--MDSDGIHM--DPTITGVCQQSRRRPILDGPPLLSDVLSLREED 170 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G ++ EIA L ++ +T+ + + S++RK + R+ A+ A ++N+V Sbjct: 171 VLRGLCRGLSNQEIADQLHLAIDTIKHAVTSLLRKLEARDRTQAVLIAFQHNLV 224 >gi|307315516|ref|ZP_07595067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306898770|gb|EFN29428.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 234 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T ++ L W SEGK+ EIA I ++ VN ++ + RK T++ A A A + Sbjct: 174 MTAKQALMLKWSSEGKSMSEIATIENMTYANVNFHMNNARRKLGASTQAQATALATK 230 >gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+A Y + ++ H +D LT RE E L+ + G T+DEIA L +S T +++ Sbjct: 130 LIAEYAS---RAKPPHPSQDLGMLTDREREVLSLVGTGMTNDEIAGKLFMSPATAKTHVS 186 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 M K + R+ + A + +V Sbjct: 187 RTMMKLHARDRAQLVVIAYESGLV 210 >gi|150003225|ref|YP_001297969.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|294776005|ref|ZP_06741501.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|149931649|gb|ABR38347.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|294450143|gb|EFG18647.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] Length = 256 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 37/77 (48%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 E +L MF V F LTGRE+E L I G S EIA L IS +TV+ + Sbjct: 170 ECTVLNLRNGEMFSPGVVIMNPAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIH 229 Query: 221 IASIMRKTATKTRSGAI 237 +++RK + AI Sbjct: 230 RQNLLRKLGVQNSLEAI 246 >gi|153839891|ref|ZP_01992558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|260902461|ref|ZP_05910856.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|149746588|gb|EDM57576.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|308109572|gb|EFO47112.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|328471379|gb|EGF42274.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 200 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ ++A L +S T+ +++ I +K + K R AIA+A +N Sbjct: 139 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 197 >gi|189424620|ref|YP_001951797.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ] gi|189420879|gb|ACD95277.1| two component transcriptional regulator, LuxR family [Geobacter lovleyi SZ] Length = 199 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + ++ G +S I LGIS TV+N+ +IM K T + + YAV+ Sbjct: 139 LTDREREVIRLVACGMSSRLIGETLGISNKTVDNHRTNIMGKLHIHTTAELVRYAVK 195 >gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] Length = 209 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A + N Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 206 >gi|326802259|ref|YP_004320078.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326553023|gb|ADZ81408.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 214 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V +D++LT RE L ++ G + I LGIS T+ +++ + RK + + + Sbjct: 146 VKINRDYQLTLREKTILNYLVNGLSYKMIGHELGISYETIRSHMKKVYRKLEVSSLTEVV 205 Query: 238 AYAVRNNIV 246 A A++ IV Sbjct: 206 AKAIKQEIV 214 >gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ RE E L +++G + EIA L +S +V NY+++++ K R+ AI A Sbjct: 153 ELSQREREILALLAQGCKNAEIAERLVVSPKSVRNYVSNVISKLQVADRAQAILRA 208 >gi|291437530|ref|ZP_06576920.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340425|gb|EFE67381.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 268 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F+L+ RE E + I+ G + +IA IS TV N+I I K + +RS A A Sbjct: 200 FQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAA 254 >gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 209 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L +++EG + IA LG+S TV +I +I R R+ A A + + Sbjct: 149 LTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|209515667|ref|ZP_03264531.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209503903|gb|EEA03895.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 489 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ RE + L IS G ++ EIA L +S +TV ++ S+ RK TR+ A Sbjct: 429 LSARETDVLRAISLGASNKEIARELTLSPSTVRTHVESVFRKLGCSTRAAA 479 >gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L + EG+T+ EIA+ L + T+ ++ ++ RK R+ A+ A+ + Sbjct: 159 KLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVRIAMSSG 218 >gi|118477263|ref|YP_894414.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416488|gb|ABK84907.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 233 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ S + D L T RE+ + Sbjct: 128 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMGSKEDECKIDTSLFTERELSII 181 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 182 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226 >gi|320353838|ref|YP_004195177.1| PAS sensor protein [Desulfobulbus propionicus DSM 2032] gi|320122340|gb|ADW17886.1| PAS sensor protein [Desulfobulbus propionicus DSM 2032] Length = 284 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT +E+E T + +GK+S EIA +LG+S TV+ + + RK Sbjct: 225 LTPQEIEVATMVRQGKSSQEIADVLGVSVATVSFHRKKLRRK 266 >gi|295133281|ref|YP_003583957.1| bacterial regulatory proteins, luxR family [Zunongwangia profunda SM-A87] gi|294981296|gb|ADF51761.1| bacterial regulatory proteins, luxR family [Zunongwangia profunda SM-A87] Length = 52 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EG TS EI+ S NTV + +I+ KT KT +GA+ YA+ + + Sbjct: 1 MGEGLTSKEISEQFFSSVNTVETHRKNILLKTVEKTTTGAVKYAIESGL 49 >gi|260565891|ref|ZP_05836361.1| glycerone kinase [Brucella suis bv. 4 str. 40] gi|260155409|gb|EEW90489.1| glycerone kinase [Brucella suis bv. 4 str. 40] Length = 694 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+ L ++ G + +IA L ++ +TV N ++++ +K + R+ A+ +A+ Sbjct: 155 QLTQRELTLLRLLANGYNNRQIAEQLQLAESTVKNNLSALFQKIGVRDRTQAVLFAISQG 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE+E L I+ +++ EIA L +S TV ++A ++ K + R A+ A Sbjct: 159 DLTPRELEVLRHIAGARSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLA 214 >gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] Length = 203 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + G + EIA L + TV NY++S + KT + R+ A A N Sbjct: 143 LTEREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201 >gi|288927582|ref|ZP_06421429.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330416|gb|EFC69000.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 198 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I +G + EIA L I TV + +IM K K+ S YAV + Sbjct: 133 LSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 192 Query: 246 V 246 V Sbjct: 193 V 193 >gi|257483366|ref|ZP_05637407.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330887959|gb|EGH20620.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 262 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S+G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 191 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 247 >gi|302535883|ref|ZP_07288225.1| response regulatory protein [Streptomyces sp. C] gi|302444778|gb|EFL16594.1| response regulatory protein [Streptomyces sp. C] Length = 207 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++ G + +IA L IS TV ++ I K TR+GA+A A Sbjct: 145 LTDRELDILGQLARGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVA 199 >gi|256061671|ref|ZP_05451810.1| dihydroxyacetone kinase family protein [Brucella neotomae 5K33] gi|261325681|ref|ZP_05964878.1| glycerone kinase [Brucella neotomae 5K33] gi|261301661|gb|EEY05158.1| glycerone kinase [Brucella neotomae 5K33] Length = 694 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|254702342|ref|ZP_05164170.1| 3,4-dihydroxy-2-butanone kinase [Brucella suis bv. 5 str. 513] gi|254708282|ref|ZP_05170110.1| 3,4-dihydroxy-2-butanone kinase [Brucella pinnipedialis M163/99/10] gi|254710656|ref|ZP_05172467.1| 3,4-dihydroxy-2-butanone kinase [Brucella pinnipedialis B2/94] gi|256032150|ref|ZP_05445764.1| 3,4-dihydroxy-2-butanone kinase [Brucella pinnipedialis M292/94/1] gi|256370041|ref|YP_003107552.1| dihydroxyacetone kinase family protein [Brucella microti CCM 4915] gi|261315783|ref|ZP_05954980.1| glycerone kinase [Brucella pinnipedialis M163/99/10] gi|261318228|ref|ZP_05957425.1| glycerone kinase [Brucella pinnipedialis B2/94] gi|261752906|ref|ZP_05996615.1| glycerone kinase [Brucella suis bv. 5 str. 513] gi|265989259|ref|ZP_06101816.1| glycerone kinase [Brucella pinnipedialis M292/94/1] gi|294852936|ref|ZP_06793609.1| dihydroxyacetone kinase domain-containing protein [Brucella sp. NVSL 07-0026] gi|256000204|gb|ACU48603.1| dihydroxyacetone kinase family protein [Brucella microti CCM 4915] gi|261297451|gb|EEY00948.1| glycerone kinase [Brucella pinnipedialis B2/94] gi|261304809|gb|EEY08306.1| glycerone kinase [Brucella pinnipedialis M163/99/10] gi|261742659|gb|EEY30585.1| glycerone kinase [Brucella suis bv. 5 str. 513] gi|264661456|gb|EEZ31717.1| glycerone kinase [Brucella pinnipedialis M292/94/1] gi|294821525|gb|EFG38524.1| dihydroxyacetone kinase domain-containing protein [Brucella sp. NVSL 07-0026] Length = 694 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|77456868|ref|YP_346373.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77380871|gb|ABA72384.1| putative two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 269 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 32/50 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +L+ R+++ + +G+T+ +IA LGI+ NTV Y++ ++R T R+ Sbjct: 199 QLSPRQLDVARLVGKGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 248 >gi|118581564|ref|YP_902814.1| two component LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504274|gb|ABL00757.1| two component transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 203 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 27/43 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 ELT RE E L I+ G T+ IA LGIS TVNN+ ++M K Sbjct: 142 ELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMGK 184 >gi|320161120|ref|YP_004174344.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994973|dbj|BAJ63744.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 355 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT R+ E L ++ EGK + +IA + G+S T+ N++ + R ++R A+ Y Sbjct: 147 LTPRQQEILLYLWEGKDNQQIARLTGLSVKTIENHLTRLYRLLNVQSRLEAVNY 200 >gi|306843006|ref|ZP_07475634.1| dihydroxyacetone kinase family protein [Brucella sp. BO2] gi|306286829|gb|EFM58368.1| dihydroxyacetone kinase family protein [Brucella sp. BO2] Length = 694 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|306844626|ref|ZP_07477213.1| dihydroxyacetone kinase family protein [Brucella sp. BO1] gi|306275070|gb|EFM56833.1| dihydroxyacetone kinase family protein [Brucella sp. BO1] Length = 694 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|261218338|ref|ZP_05932619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261320813|ref|ZP_05960010.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|260923427|gb|EEX89995.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293503|gb|EEX96999.1| two component transcriptional regulator [Brucella ceti M644/93/1] Length = 157 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ LT ++EG + +IA LG+S TV +++++++K +R+ A+ Sbjct: 93 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 144 >gi|300771877|ref|ZP_07081748.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761263|gb|EFK58088.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 459 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 38/62 (61%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V ++++LT RE++ L + EG ++ E+ L IS NTV +++++ K K+R+ A+ Sbjct: 390 VFLKENYQLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQAL 449 Query: 238 AY 239 + Sbjct: 450 KF 451 >gi|269126984|ref|YP_003300354.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311942|gb|ACY98316.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G +EIA L ++ TV NY+AS + K + R AI A Sbjct: 141 LTERELEVLRIAASGSGVEEIAATLFLTTGTVRNYLASAVSKLNARNRIDAIRIA 195 >gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] Length = 213 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|17986681|ref|NP_539315.1| deoxyribonucleoside regulator / dihydroxyacetone kinase [Brucella melitensis bv. 1 str. 16M] gi|256045241|ref|ZP_05448138.1| deoxyribonucleoside regulator / dihydroxyacetone kinase [Brucella melitensis bv. 1 str. Rev.1] gi|260565165|ref|ZP_05835649.1| glycerone kinase [Brucella melitensis bv. 1 str. 16M] gi|265991671|ref|ZP_06104228.1| glycerone kinase [Brucella melitensis bv. 1 str. Rev.1] gi|17982301|gb|AAL51579.1| deoxyribonucleoside regulator / dihydroxyacetone kinase [Brucella melitensis bv. 1 str. 16M] gi|260151233|gb|EEW86327.1| glycerone kinase [Brucella melitensis bv. 1 str. 16M] gi|263002455|gb|EEZ15030.1| glycerone kinase [Brucella melitensis bv. 1 str. Rev.1] Length = 694 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|117927726|ref|YP_872277.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648189|gb|ABK52291.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E L I EG T+ +I L ++ TV NY++SI+ K + R+ A AV + Sbjct: 159 LTEQERRVLELIGEGLTNRQIGERLFLAEKTVKNYVSSILAKLGLQRRTQAAVLAVEH 216 >gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 215 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G ++ EIA L + +TV +++ I+ K + R A+ +A RN + Sbjct: 155 LTEREREVIQLLASGMSNAEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214 >gi|300727173|ref|ZP_07060591.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] gi|299775559|gb|EFI72151.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] Length = 199 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ +++G + EIA L I TV + +I K K+ S YAV + Sbjct: 134 LSDREIEVLSLVAQGHINKEIAEKLNIGLTTVITHRKNIQEKLGMKSVSALTIYAVMHGY 193 Query: 246 V 246 V Sbjct: 194 V 194 >gi|298253154|ref|ZP_06976946.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] gi|297532549|gb|EFH71435.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244 L +E++ + +S+G T+++IA LG+ NT+N +I I +K R AI A+A N Sbjct: 159 LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218 >gi|227540152|ref|ZP_03970201.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240013|gb|EEI90028.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 465 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 38/62 (61%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V ++++LT RE++ L + EG ++ E+ L IS NTV +++++ K K+R+ A+ Sbjct: 396 VFLKENYQLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQAL 455 Query: 238 AY 239 + Sbjct: 456 KF 457 >gi|225853095|ref|YP_002733328.1| glycerone kinase [Brucella melitensis ATCC 23457] gi|256263418|ref|ZP_05465950.1| glycerone kinase [Brucella melitensis bv. 2 str. 63/9] gi|225641460|gb|ACO01374.1| Glycerone kinase [Brucella melitensis ATCC 23457] gi|263093430|gb|EEZ17480.1| glycerone kinase [Brucella melitensis bv. 2 str. 63/9] gi|326409641|gb|ADZ66706.1| glycerone kinase [Brucella melitensis M28] gi|326539345|gb|ADZ87560.1| glycerone kinase [Brucella melitensis M5-90] Length = 694 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|168699466|ref|ZP_02731743.1| two-component response regulator [Gemmata obscuriglobus UQM 2246] Length = 220 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L + +G T EIA L +S TV Y A + KT KTR+ + Y + Sbjct: 146 QLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKTRADYVRYGLEAG 205 Query: 245 IV 246 ++ Sbjct: 206 LL 207 >gi|160938403|ref|ZP_02085758.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC BAA-613] gi|158438776|gb|EDP16533.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC BAA-613] Length = 222 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT E + + + G ++ EIA L +S TV NY+++I+ K + R+ +AV+ N Sbjct: 156 ELTKTEWKIIAQVEVGASNREIAEALKLSEGTVRNYLSTILNKLDLRDRTQLAIWAVQTN 215 Query: 245 I 245 + Sbjct: 216 V 216 >gi|114321869|ref|YP_743552.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228263|gb|ABI58062.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 214 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E ++EG S EIA +L IS TV NY + I K A + A+R + Sbjct: 152 LSAREFEIFRLLAEGCGSAEIARLLNISYKTVANYGSGIREKLALNNVAEMTRLAIRAGV 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|85859978|ref|YP_462180.1| sensory domain-containing/LuxR family regulatory protein [Syntrophus aciditrophicus SB] gi|85723069|gb|ABC78012.1| sensory domain linked to a LuxR regulatory protein [Syntrophus aciditrophicus SB] Length = 716 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT E++ + + EGKTS EIA IL + ++ + +I +K + G+++ +R+ Sbjct: 657 LTKTEIQIASLVREGKTSKEIAAILNSKKRVIDFHRENIRKKLGLNNKKGSLSILLRS 714 >gi|16519697|ref|NP_443817.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a [Sinorhizobium fredii NGR234] gi|2495425|sp|P55407|TRAR_RHISN RecName: Full=Probable transcriptional activator protein traR gi|7465594|pir||T02771 probable transcription activator traR - Rhizobium sp. plasmid pNGR234a gi|158429605|pdb|2Q0O|A Chain A, Crystal Structure Of An Anti-Activation Complex In Bacterial Quorum Sensing gi|158429606|pdb|2Q0O|B Chain B, Crystal Structure Of An Anti-Activation Complex In Bacterial Quorum Sensing gi|2182351|gb|AAB91637.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a [Sinorhizobium fredii NGR234] Length = 236 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ CL W S+GKT+ A + GI+ TV +Y+ K ++ +A A + Sbjct: 176 LSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGL 235 Query: 246 V 246 V Sbjct: 236 V 236 >gi|13471833|ref|NP_103400.1| hypothetical protein mll1934 [Mesorhizobium loti MAFF303099] gi|14022577|dbj|BAB49186.1| mll1934 [Mesorhizobium loti MAFF303099] Length = 390 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F+LT E L I G ++ E A+ LGI NT+ ++ I KT TK ++ Sbjct: 322 FDLTPAEARILLRIGSGLSASESALSLGIGENTLKTHLNRIFAKTGTKRQA 372 >gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT E L +++ G ++ EIA L +S+ TV +++++++ KT R+ +A+ Sbjct: 152 IELTPTETRILQYVARGMSNREIAAELHVSQRTVESHVSNMLGKTGCHNRTELARWAI 209 >gi|260911715|ref|ZP_05918291.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260634140|gb|EEX52254.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 206 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I +G + EIA L I TV + +IM K K+ S YAV + Sbjct: 141 LSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 200 Query: 246 V 246 V Sbjct: 201 V 201 >gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 206 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE+E L +SEGK++ EIA L ++ T+ ++ ++ RK R+ A Sbjct: 146 LTKRELEVLRGLSEGKSNKEIARDLDLTEPTIKLHMKTLYRKLEVNNRTQA 196 >gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + ++ G+T+ E+A L +S +TV ++ SI K + R A+A + + Sbjct: 155 LTERELDVVRLVARGRTNQEVAAELFVSLSTVKTHLGSIQAKLGARNRVEIAAWAWESGV 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|220912826|ref|YP_002488135.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859704|gb|ACL40046.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ +E + L + +G T+ +I L ++ TV NY++SI+ K + R+ A + RN+ Sbjct: 164 LSAQEKKVLALVGQGLTNRQIGDELFLAEKTVKNYVSSILAKLGFERRTQAAVFVTRNS 222 >gi|33592739|ref|NP_880383.1| response regulatory protein [Bordetella pertussis Tohama I] gi|33572387|emb|CAE41947.1| response regulatory protein [Bordetella pertussis Tohama I] gi|332382154|gb|AEE67001.1| response regulatory protein [Bordetella pertussis CS] Length = 224 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L I+ G T DEIA L +SR+TV ++ I RK ++ AI A Sbjct: 163 LSPRERQVLERITLGYTYDEIASELEVSRHTVQTFVRRIYRKLQVHSKVDAINAA 217 >gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] Length = 209 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|332670939|ref|YP_004453947.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339977|gb|AEE46560.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 218 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT E+ L I EG ++ EIA LG++ TV N+I S++ K + R+ A+ Sbjct: 150 LTPSELRVLDLIGEGLSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 203 >gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 222 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L +S+G T+ +IA GIS NTV ++ ++ K + R+ A+A R Sbjct: 155 QLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYSR 212 >gi|296141417|ref|YP_003648660.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029551|gb|ADG80321.1| transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 286 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REV+ L ++ G T+ E+A L I TV Y+ S +K T+TR Sbjct: 225 LTAREVDVLAQVALGCTNAEVAQRLSIGAETVKAYLRSAGQKLGTRTR 272 >gi|297196862|ref|ZP_06914259.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197711546|gb|EDY55580.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 856 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE+ L + T EI + +S NTV Y S+ RK +R A+A A Sbjct: 795 ELTDRELSILRALQGSATQREIGAAMFLSINTVKAYNKSLYRKLGVASRQDAVAAA 850 >gi|161619564|ref|YP_001593451.1| 3,4-dihydroxy-2-butanone kinase [Brucella canis ATCC 23365] gi|161336375|gb|ABX62680.1| 3,4-dihydroxy-2-butanone kinase [Brucella canis ATCC 23365] Length = 694 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|71737875|ref|YP_276535.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558428|gb|AAZ37639.1| DNA binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 258 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S+G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243 >gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 211 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 151 LTPRELEVLRLLARGYTYREIAETLFISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 210 >gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E +++GK+ EIA L +S TV ++ K + R+ +A+A R+ + Sbjct: 155 LTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 214 Query: 246 V 246 Sbjct: 215 A 215 >gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 225 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L ++ G ++ EIA L I+ +TV ++AS+M K + R Sbjct: 158 LTAREEEVLATVARGLSNSEIASELHITVSTVKTHLASLMTKLGVRNR 205 >gi|86135201|ref|ZP_01053783.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] gi|85822064|gb|EAQ43211.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] Length = 213 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + KS + D L RE+E L T E+A + +S T++ Y ++ K + Sbjct: 137 LMKSVNGVLKDDVVLKPREIEFLKLACTEMTYKEVADKMCLSPKTIDGYREALFAKLNVR 196 Query: 232 TRSGAIAYAVRNNI 245 R G + YAVRN I Sbjct: 197 NRVGMVIYAVRNKI 210 >gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA L ++ TV ++ ++ K + R+ + YA + + Sbjct: 151 LTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLGRVLAKLGLRDRAQVVVYAYESGL 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|257095255|ref|YP_003168896.1| two component LuxR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047779|gb|ACV36967.1| two component transcriptional regulator, LuxR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 216 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 RI R+ +L A F + V + + LT RE + +SEG E A IL Sbjct: 123 RIASRESFVSPDMLPALLDRHFPAGGVSFDR---LTQREFQVFKLLSEGHALPECADILN 179 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV+N+ I K + + A+R +V Sbjct: 180 LSSKTVSNHFTQIRAKLGVDSPAEMARIAIRQGLV 214 >gi|256114193|ref|ZP_05454947.1| Glycerone kinase [Brucella melitensis bv. 3 str. Ether] gi|265995509|ref|ZP_06108066.1| glycerone kinase [Brucella melitensis bv. 3 str. Ether] gi|262766622|gb|EEZ12411.1| glycerone kinase [Brucella melitensis bv. 3 str. Ether] Length = 694 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|300022341|ref|YP_003754952.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299524162|gb|ADJ22631.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 215 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I + KT+DEIA +S TV NY +I K +T + Y +R + Sbjct: 150 LSPREFEILRMILDEKTTDEIAQAFNLSPKTVANYHYAIKSKLGVRTDIELVYYCLRQGL 209 >gi|254714839|ref|ZP_05176650.1| dihydroxyacetone kinase family protein [Brucella ceti M644/93/1] gi|254717896|ref|ZP_05179707.1| dihydroxyacetone kinase family protein [Brucella ceti M13/05/1] gi|261219744|ref|ZP_05934025.1| glycerone kinase [Brucella ceti M13/05/1] gi|261322634|ref|ZP_05961831.1| glycerone kinase [Brucella ceti M644/93/1] gi|260924833|gb|EEX91401.1| glycerone kinase [Brucella ceti M13/05/1] gi|261295324|gb|EEX98820.1| glycerone kinase [Brucella ceti M644/93/1] Length = 694 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|253996438|ref|YP_003048502.1| two component LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983117|gb|ACT47975.1| two component transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 213 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 14/107 (13%) Query: 154 ILRDRLWEIGLLAAYQANMFKSY------------DVHWGKD--FELTGREVECLTWISE 199 +L+ L + LLA +AN K+Y + D L+ RE E ++E Sbjct: 105 VLKSGLADDLLLAVREANSGKTYISPNIAQKIVMQSLAGAADPTERLSAREFEVFRLLAE 164 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G D+IA++L +S+ TV NY + +K + A+R ++ Sbjct: 165 GSGVDDIALMLNVSQKTVANYQTILKQKLGITNAVELVRLAIRYGVI 211 >gi|254381845|ref|ZP_04997208.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340753|gb|EDX21719.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 205 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L G T+ E+A L +S TV NY+++ ++K A++ R+ A+ A Sbjct: 145 LTDREREVLRAAEFGATNAELAERLHLSPGTVRNYLSTAIQKLASRNRAEAVRVA 199 >gi|169827849|ref|YP_001698007.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168992337|gb|ACA39877.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 145 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L REV L + EG T+ EI+ L +++ T+ NY+++ ++K ++R A A Sbjct: 85 LNEREVAVLQLVKEGLTTHEISKQLFLTKGTIRNYLSTSIQKLQVESRQQAAQIA 139 >gi|166710233|ref|ZP_02241440.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 222 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|152980614|ref|YP_001353170.1| transcriptional regulator [Janthinobacterium sp. Marseille] gi|151280691|gb|ABR89101.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE E + +GKTS IA +G+S TV + A +MRK T S Sbjct: 132 ELTPREREIAALLVDGKTSKLIAKQIGLSPRTVEMHRAKLMRKFTATTSS 181 >gi|148560429|ref|YP_001259487.1| dihydroxyacetone kinase family protein [Brucella ovis ATCC 25840] gi|148371686|gb|ABQ61665.1| dihydroxyacetone kinase family protein [Brucella ovis ATCC 25840] Length = 694 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240 C + +G+T EIA I+GISR TVN+Y+A I+ + R G++A A Sbjct: 34 CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86 >gi|114328570|ref|YP_745727.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114316744|gb|ABI62804.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 238 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E + +G++ +EIAVILG+S T + I K + + I YAV Sbjct: 174 LSRREREVFDLLGQGRSLNEIAVILGVSYRTAAHAALQIRSKLGYNSAAALIKYAV 229 >gi|332141579|ref|YP_004427317.1| putative regulator in two-component regulatory system ; LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551601|gb|AEA98319.1| putative regulator in two-component regulatory system ; LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 211 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 34/53 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT ++++ L+++ G + +IA + ++ T+ +I++I+RK TR+ A+ Sbjct: 150 ELTPKQIQVLSYLRAGLMNKQIAHEMNVTEATIKAHISAILRKLEINTRTQAV 202 >gi|289666156|ref|ZP_06487737.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670749|ref|ZP_06491824.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 222 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|262200127|ref|YP_003271335.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083474|gb|ACY19442.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 410 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE E L ++ G+ + IA LG+S NT+ ++ SI++K R A A R I Sbjct: 348 LNPREREVLGHLALGRRNKSIAAELGVSENTIKFHVTSILQKLHVSNRGEAGLLAARAGI 407 >gi|257455373|ref|ZP_05620608.1| PAS domain containing response regulator, LuxR family [Enhydrobacter aerosaccus SK60] gi|257447335|gb|EEV22343.1| PAS domain containing response regulator, LuxR family [Enhydrobacter aerosaccus SK60] Length = 202 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +LT RE + ++ G T EI +LG+S T+ + A++M+K +++ Sbjct: 123 QLTAREAQIAQYVVNGYTCKEIGKLLGLSPRTIEVHKANLMKKLGARSKG 172 >gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 221 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 157 DLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 216 Query: 245 IV 246 +V Sbjct: 217 LV 218 >gi|256377649|ref|YP_003101309.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921952|gb|ACU37463.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 189 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT ++ L +++G + IA L S +TV N I + + + R+ A+A+AVR + Sbjct: 129 LTAKQTAVLQLMADGLGNSAIAAALACSEHTVKNVIYELTARLRARNRAHAVAHAVRLGL 188 Query: 246 V 246 V Sbjct: 189 V 189 >gi|284041267|ref|YP_003391197.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820560|gb|ADB42398.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 213 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D+ + ++ RE++ L I++ + +IA L IS TV + +M+K +T G Sbjct: 144 DLDKPQKITISKRELDVLKLIAQEFSGTQIAEKLFISPTTVETHRKHLMQKLGVQTTIGL 203 Query: 237 IAYAVRNNIV 246 + YA++ N+V Sbjct: 204 VKYAIKFNLV 213 >gi|149914863|ref|ZP_01903392.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b] gi|149811051|gb|EDM70888.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b] Length = 252 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 K LT R+ E L W+ +GKT +IAV++G++ TV ++ Sbjct: 183 KGRTLTRRQREVLAWVGDGKTIQDIAVLMGLTPATVEKHL 222 >gi|83945712|ref|ZP_00958057.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83850913|gb|EAP88773.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 210 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE + L+ I G + E A LG+S +T+ +I S+ K TR+ A A R Sbjct: 149 DLTPRERDVLSLIGRGLRNAEAASALGLSEHTIAGHIKSVYSKLGISTRAEAALLASR 206 >gi|317405260|gb|EFV85592.1| LuxR family Two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 210 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L ++EG + EIA L +SR TV +I I RK A +R+ AI A Sbjct: 149 LSPREGQILRLVAEGLGNREIAEQLHLSRYTVECHIKHIYRKLAVSSRTRAIHTA 203 >gi|310815269|ref|YP_003963233.1| two-component regulator [Ketogulonicigenium vulgare Y25] gi|308754004|gb|ADO41933.1| two-component regulator [Ketogulonicigenium vulgare Y25] Length = 768 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D G LT +E+ + + EG T+ EIA +LG+S TV ++ ++ RK TR+ Sbjct: 698 DSDRGAALGLTRQEMRAMYALIEGATNKEIAKLLGLSEATVKFHLKNLYRKLGCATRA 755 >gi|304404077|ref|ZP_07385739.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304347055|gb|EFM12887.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 220 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F LT E + I++G ++ EIA L +S TV NYI+ I+ K + R+ Sbjct: 160 FGLTAAEQSIVRHIADGLSNKEIAASLFLSEGTVKNYISDILNKLELRDRT 210 >gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++G ++ E+A L +S TV ++A I+ K + R A+ A + Sbjct: 156 LTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLRDRVQAVIVAYETGL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|257789986|ref|YP_003180592.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|317489430|ref|ZP_07947941.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325830178|ref|ZP_08163635.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|257473883|gb|ACV54203.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|316911483|gb|EFV33081.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325487645|gb|EGC90083.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 487 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q ++ +S+ LT RE + L + +G+T IA LG+S NT+ YI ++ +K+ Sbjct: 409 QVDLLRSF----AAAHALTARETDVLILLCQGRTRTYIADELGLSPNTIKGYIHNVYQKS 464 Query: 229 AT 230 + Sbjct: 465 SA 466 >gi|84625936|ref|YP_453308.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188579161|ref|YP_001916090.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84369876|dbj|BAE71034.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188523613|gb|ACD61558.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 222 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|124266879|ref|YP_001020883.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124259654|gb|ABM94648.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 240 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE E L ++EG ++ IA LGI+ TV ++ +++RK ++R A A+ R Sbjct: 176 QLSARERETLALVAEGCSNKLIARQLGIAEATVKIHVQNLLRKLGLESRVHAAAWYAR 233 >gi|317503418|ref|ZP_07961460.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315665470|gb|EFV05095.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 214 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ I++G + EIA L I TV ++ +I+ K K+ S YAV + Sbjct: 149 LSDREIEVLSLIAQGFINKEIANQLNIGLTTVISHRKNIVEKLGMKSVSALTIYAVMHGY 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 218 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L ++ G+T+ EIA L IS T ++AS++ K + R Sbjct: 156 LTQREEEVLKLVAVGRTNAEIAAELFISLTTAKTHVASLLAKIGARNR 203 >gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 258 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL +EG ++ EI+ I+G S TV ++ + +K + R+ A+ A Sbjct: 192 LTERERECLRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRAT 247 >gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 217 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++E T+ +IA L IS TV+N+ ++MRK + YAV + Sbjct: 151 LTDREREILQLVAESYTTKDIATKLDISAKTVDNHRTNLMRKLNLHDVASLTRYAVEIGL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G + EIA L I+ TV + IM+K + YA+R + Sbjct: 148 LTAREMEVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQKLDLHNSAELATYAIRRGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 461 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G +++EIA L IS NTV +I +I K +R+ A AVR + Sbjct: 7 LSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLEAVRRGL 66 Query: 246 V 246 + Sbjct: 67 I 67 >gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 211 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 W LT RE++ L G+++ IA LGI TV NY++ + K + R+ A Sbjct: 145 WDAQSPLTEREIQVLRAAETGRSTAAIAAELGIGVGTVRNYLSEAIGKLGAENRAEA 201 >gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 225 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT E++ + +++ G + EIA L +S+ TV +++++++ KT R+ +A+ Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221 Query: 243 NNIV 246 N + Sbjct: 222 NQMA 225 >gi|330987589|gb|EGH85692.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012581|gb|EGH92637.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 258 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S+G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243 >gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 225 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT E++ + +++ G + EIA L +S+ TV +++++++ KT R+ +A+ Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221 Query: 243 NNIV 246 N + Sbjct: 222 NQMA 225 >gi|283782308|ref|YP_003373063.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440761|gb|ADB19203.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 229 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +SEG+++ EIA L IS +V ++ + K T + + +A + Sbjct: 154 LTHREIEVLRQLSEGRSNREIAQSLDISLRSVEKEVSDLKEKVQMSTINELLMFAANEGL 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|291302292|ref|YP_003513570.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571512|gb|ADD44477.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 210 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L+ I G ++ +I LG++ TV +++ I+ K ++R A A N I Sbjct: 150 LTQREIEVLSHIGRGLSNADIGKDLGMAEATVKTHVSRILSKLELQSRVQAAILAQENGI 209 >gi|254467347|ref|ZP_05080758.1| nitrate/nitrite response regulator protein, putative [Rhodobacterales bacterium Y4I] gi|206688255|gb|EDZ48737.1| nitrate/nitrite response regulator protein, putative [Rhodobacterales bacterium Y4I] Length = 204 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 35/55 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L+ RE L +S+G T+ E++ L IS NTV +++++ K + K R+ AIA+ Sbjct: 135 QLSRRERTMLEALSKGLTNKELSKELEISTNTVKFHLSNLYEKLSVKNRAQAIAF 189 >gi|241518233|ref|YP_002978861.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862646|gb|ACS60310.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 236 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF + RE CL W +EG IA + G++ +TV + + K T+ A+A A R Sbjct: 173 DFIFSDREALCLRWAAEGLPMHSIADVTGLTYHTVRWDLDRVKAKLGVYTQKQAVAVASR 232 Query: 243 NNIV 246 ++ Sbjct: 233 FGLI 236 >gi|108805868|ref|YP_645805.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767111|gb|ABG05993.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 226 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT R+++ L IS GKT EI+ L +S TV N++ +++R ++ A+A A Sbjct: 164 LTPRQLDVLQLISRGKTVREISQELYLSEATVRNHVGAVLRALDAHSQLEAVARA 218 >gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 215 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GK+ L+ RE E L I++G ++DE+ L IS +TV ++ +I K R A +A Sbjct: 151 GKEM-LSAREREVLLLIAQGLSNDEVGDKLCISLSTVKKHLCNIYAKLKISNRIQAAFWA 209 Query: 241 VRN 243 V+N Sbjct: 210 VQN 212 >gi|301060636|ref|ZP_07201463.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300445248|gb|EFK09186.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 204 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT E+ I +GKTS E+A ++G+S NTV+ + I +K Sbjct: 147 LTPTEIRVAVLIRKGKTSKEVAEVMGVSLNTVHGHRKKIRKK 188 >gi|299770091|ref|YP_003732117.1| response regulator [Acinetobacter sp. DR1] gi|298700179|gb|ADI90744.1| response regulator [Acinetobacter sp. DR1] Length = 239 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT RE E + +S+G + E+A +LGI T+ ++ + MRK R+ Sbjct: 181 YGLTPREQEVVHLVSKGLSDKEVASLLGIGFTTLRTHLNNAMRKIGCNNRT 231 >gi|283782679|ref|YP_003373433.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] gi|283441376|gb|ADB13842.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] Length = 246 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244 L +E++ + +S+G T+++IA LG+ NT+N +I I +K R AI A+A N Sbjct: 159 LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218 >gi|167763338|ref|ZP_02435465.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC 43183] gi|167698632|gb|EDS15211.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC 43183] Length = 203 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E L I+ GKT+ EIA +S +TVN++ +I RK A YA++ I Sbjct: 136 LTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLNVNNAHEATKYAMKAGI 195 Query: 246 V 246 V Sbjct: 196 V 196 >gi|153007753|ref|YP_001368968.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559641|gb|ABS13139.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 214 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ LT ++EG + +IA LG+S TV +++++++K +R+ A+ Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQAV 200 >gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 225 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E L ++ G+++ +IA G+S TV +++ ++ K +R+ A YA++ I Sbjct: 158 LTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYALKYGI 217 >gi|113970651|ref|YP_734444.1| LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|114047880|ref|YP_738430.1| LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113885335|gb|ABI39387.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4] gi|113889322|gb|ABI43373.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 211 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G T+ +IA L +S +T+ ++ + RK +R AIA+A Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM 22836] Length = 245 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K +LT RE+ L I EG S EI+ L IS +TVN + I+ K A+ YA Sbjct: 180 KASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQRILEKLDVNNSMEAVKYA 238 >gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 212 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G T+ IAV LG+S TV + + +M K + +A+R+ + Sbjct: 149 LTAREKQVLALLASGLTTQAIAVRLGVSPKTVETHRSHVMSKLDLYDIASLTRFALRHGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 256 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++ EIA L +S +TV ++ +++ K + R A+ A + Sbjct: 167 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRVQAVICAYETGL 226 Query: 246 V 246 + Sbjct: 227 I 227 >gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4] Length = 218 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +++G T+ +IA L +S TV N++ S +RK R YA+ + + Sbjct: 156 LTDRETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 215 >gi|163735511|ref|ZP_02142943.1| DNA-binding response regulator, LuxR family protein [Roseobacter litoralis Och 149] gi|161391131|gb|EDQ15468.1| DNA-binding response regulator, LuxR family protein [Roseobacter litoralis Och 149] Length = 221 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ +E L +S+G T+ E+A L IS NTV ++ ++ K + K R+ AIA+ Sbjct: 150 LSRKERATLDALSKGLTNRELAKELSISTNTVKFHLTNLYEKLSVKNRAQAIAF 203 >gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces kasugaensis] Length = 215 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L +++G + +IA L IS TV ++ I K TR+GA+A A Sbjct: 154 LTDRERDILAQLAQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVA 208 >gi|116671431|ref|YP_832364.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116611540|gb|ABK04264.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 545 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ GK + IA L +S TV +I++I K ++R A YA + + Sbjct: 484 LTPREIEVLRLVAAGKANRVIAGELYLSEKTVARHISNIFLKLGLRSRVAATRYAFEHGL 543 Query: 246 V 246 Sbjct: 544 A 544 >gi|325917495|ref|ZP_08179701.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536289|gb|EGD08079.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 222 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|319648196|ref|ZP_08002413.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2] gi|317389831|gb|EFV70641.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2] Length = 213 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LL KG ++ D GLL + + S D H LT E++ L ++ GKT+ Sbjct: 119 ILLCLKGDVLFPD-----GLLQKLRLDSDLSVDEH------LTDTELDILQKVASGKTNK 167 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S V +++ I +K +R A+ N++ Sbjct: 168 EIAADLQMSTRNVEYHLSKIYKKLKVTSRYCAVKKGTMLNLI 209 >gi|289627373|ref|ZP_06460327.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647852|ref|ZP_06479195.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298488974|ref|ZP_07006997.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156472|gb|EFH97569.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867161|gb|EGH01870.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871049|gb|EGH05758.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 258 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S+G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243 >gi|227364555|ref|ZP_03848616.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325682330|ref|ZP_08161847.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|227070392|gb|EEI08754.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978169|gb|EGC15119.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 223 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G L+ RE E L I G T+ EIA + IS TV + IM+K + + + Y Sbjct: 155 LGNYVALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHY 214 Query: 240 AVRNNIV 246 AV++ +V Sbjct: 215 AVKHRLV 221 >gi|119774583|ref|YP_927323.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767083|gb|ABL99653.1| transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 210 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 181 GKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 G+D+E LT RE E L + G T+ +IA L +S +T+ ++ RK +R Sbjct: 137 GEDYEEDSEKLTIREREVLQALLSGSTNLDIANRLFVSESTIKTHLYRAFRKIGVSSRGQ 196 Query: 236 AIAYA 240 AIA+A Sbjct: 197 AIAWA 201 >gi|319942697|ref|ZP_08017003.1| hypothetical protein HMPREF9464_02222 [Sutterella wadsworthensis 3_1_45B] gi|319803707|gb|EFW00648.1| hypothetical protein HMPREF9464_02222 [Sutterella wadsworthensis 3_1_45B] Length = 216 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LTGRE E + +G + EIA +LGIS TV Y A+ +K T A + R Sbjct: 151 LTGREREVIDLAVKGMQNKEIADLLGISVTTVKMYRANAFQKLGVNTILAASQFLAR 207 >gi|164686850|ref|ZP_02210878.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM 16795] gi|164604240|gb|EDQ97705.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM 16795] Length = 826 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 ++ KG ++ + EI +L K K EL+ RE+E ++G T++EI Sbjct: 729 IYEKGN--FKEAIDEIRILQKAYEEFLKFVKKEKSKVVELSERELEVANLAAQGFTNNEI 786 Query: 207 AVILGISRNTVNNYIASIMRKTATKTR 233 A L +S NTV + ++ +K K+R Sbjct: 787 AKKLFVSVNTVKTILKAVFKKLCIKSR 813 >gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 246 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 183 IDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 242 Query: 244 NI 245 + Sbjct: 243 GL 244 >gi|91225640|ref|ZP_01260714.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269967600|ref|ZP_06181651.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|91189760|gb|EAS76034.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269827795|gb|EEZ82078.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 214 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ ++A L +S T+ +++ I +K + K R AIA+A +N Sbjct: 153 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211 >gi|21244897|ref|NP_644479.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|294626449|ref|ZP_06705049.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667013|ref|ZP_06732241.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21110608|gb|AAM39015.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|292599248|gb|EFF43385.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603230|gb|EFF46653.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 222 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|15966696|ref|NP_387049.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075968|emb|CAC47522.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 237 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L I G + IA LG+S NTV ++ +I +K + R+ A + RN+ Sbjct: 163 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRND 221 >gi|308178849|ref|YP_003918255.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746312|emb|CBT77284.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 229 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE L ++EGK++ IA +L +S +V YI SI +K Sbjct: 155 LTDRERTVLAAVAEGKSNQAIAALLFLSEASVEKYITSIFQK 196 >gi|241763263|ref|ZP_04761320.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241367538|gb|EER61825.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 191 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT R+++ L + GK + IA LG+S NTV ++A+I + +RS Sbjct: 143 LTARQLDVLLQLCTGKPNKVIARNLGLSENTVRVHVAAIFAQLGVNSRS 191 >gi|239942277|ref|ZP_04694214.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988743|ref|ZP_04709407.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445736|ref|ZP_06585126.1| response regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291348683|gb|EFE75587.1| response regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L +S+G + +IA L IS TV ++ I K TR+GA++ A Sbjct: 153 LTDRERDILAQLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVA 207 >gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E ++ G ++DEIAV + IS T +++ M K + R+ + +A + + Sbjct: 154 LTNREREVTALVARGLSNDEIAVHMVISPTTAKTHVSRAMTKLRARDRAQLVVFAYESGL 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|296123997|ref|YP_003631775.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296016337|gb|ADG69576.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 217 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE E L I+ G + EIA L IS TV Y + M+K + + R+ + +A++ Sbjct: 153 LSERETEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELVRFAMK 209 >gi|187924738|ref|YP_001896380.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715932|gb|ACD17156.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 181 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 26/46 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT RE E + GKTS +I L IS TV+ Y A +MRK T Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRALDISPRTVDVYRARLMRKYDT 168 >gi|186474727|ref|YP_001863698.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184198686|gb|ACC76648.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 210 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ G++ +EIA +S T++ Y +M+K + I YA+R+ + Sbjct: 148 LSDREFQVLQMLAAGRSINEIADACALSAKTISTYKTRLMQKLGFSNNAEVIRYAIRHGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|21233483|ref|NP_639400.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770447|ref|YP_245209.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21115332|gb|AAM43282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575779|gb|AAY51189.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 222 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|323358984|ref|YP_004225380.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323275355|dbj|BAJ75500.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 556 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT R+ E I+ G + EIA +L +S TV N+++ I+R+ ++R Sbjct: 494 LTPRQREIARLIARGLRNSEIARVLSVSDKTVENHVSEILRRLGRRSR 541 >gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22] gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22] Length = 238 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L ++ G + EIA L IS TV ++ I K +TR+GA+A A Sbjct: 177 LSEREHEILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGAVAVA 231 >gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A Sbjct: 133 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 184 >gi|213963027|ref|ZP_03391286.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] gi|213954368|gb|EEB65691.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] Length = 235 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E LT S+G +S EIA L IS TVN + +I K ++ AI A + Sbjct: 173 FTLTPREKEILTLASQGFSSKEIAEKLFISTYTVNRHRQNIREKFNAESLIEAIDIARKK 232 Query: 244 NIV 246 ++ Sbjct: 233 GVL 235 >gi|196233743|ref|ZP_03132582.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222105|gb|EDY16636.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 249 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E L W+ +GK+ IA L S T+ Y + K ++ S IA+A R Sbjct: 169 LSNRELEVLEWMGQGKSVKAIAQRLERSAKTIETYRQRLKEKLNIESNSELIAHAAR 225 >gi|24374266|ref|NP_718309.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24348793|gb|AAN55753.1|AE015711_10 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1] Length = 211 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G T+ +IA L +S +T+ ++ + RK +R AIA+A Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|78049832|ref|YP_366007.1| LuxR family two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038262|emb|CAJ26007.1| two-component system response regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 222 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT E++ + +++ G + EIA L +S+ TV +++++++ KT R+ +A+ Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221 Query: 243 NNIV 246 N + Sbjct: 222 NQMA 225 >gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] Length = 274 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L I +G ++ EIA L +S +TV +++ ++ KT ++R+ A A RN Sbjct: 214 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA-RNT 272 Query: 245 I 245 + Sbjct: 273 L 273 >gi|239906056|ref|YP_002952795.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239795920|dbj|BAH74909.1| NarL family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 218 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + + EG ++ E+A L IS T ++ S+MRK + + YA + + Sbjct: 157 LTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGSLMRKLGMQNSVELVRYATKLGL 216 Query: 246 V 246 + Sbjct: 217 I 217 >gi|160938544|ref|ZP_02085898.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC BAA-613] gi|158438531|gb|EDP16289.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC BAA-613] Length = 211 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + + ++ G + EIA L ++ TV N I+ ++ K K R+ +AV++N Sbjct: 149 DLTPRERDIMRLVARGMDNREIAGALFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVKHN 208 Query: 245 I 245 + Sbjct: 209 L 209 >gi|152987185|ref|YP_001347466.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150962343|gb|ABR84368.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 207 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 180 WGKDFELTGR----EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + D EL GR EV L ++S+G ++ +I+ + IS TV+ Y A ++ K + Sbjct: 137 YSDDVELLGRLSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVD 196 Query: 236 AIAYAVRNNIV 246 I +A RN ++ Sbjct: 197 LIEFAKRNALI 207 >gi|84687579|ref|ZP_01015454.1| transcriptional regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664369|gb|EAQ10858.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 183 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE + ++EG T+ EIA +LGIS TV + A ++ K K Sbjct: 124 LTERERQVAARLAEGLTAKEIARVLGISHRTVETHRAKLLVKMKAK 169 >gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 215 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT E + + +++ G + EIA L +S+ T+ +++++++ KT R+ +A+ Sbjct: 152 DVDLTPTERKVVQFVARGMANREIAQQLNVSQRTIESHVSNMLGKTGLHNRTELARWAIE 211 Query: 243 NNI 245 N++ Sbjct: 212 NSM 214 >gi|332669021|ref|YP_004452029.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338059|gb|AEE44642.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 222 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ +E E ++ G ++ EIA + S +TV ++ SI+RK A + R + +A + Sbjct: 160 LALSDKEREVFEAVARGLSNTEIAQAVLASESTVKTHVGSILRKLALRDRVQVVVFAHEH 219 Query: 244 NIV 246 +V Sbjct: 220 GLV 222 >gi|330998013|ref|ZP_08321844.1| hemerythrin HHE cation binding domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569314|gb|EGG51094.1| hemerythrin HHE cation binding domain protein [Paraprevotella xylaniphila YIT 11841] Length = 326 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G ++ EIA L IS NTV + +I RK + +G YA+ N + Sbjct: 259 LSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGLTIYAIVNGL 318 Query: 246 V 246 + Sbjct: 319 I 319 >gi|325927987|ref|ZP_08189208.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325541672|gb|EGD13193.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 222 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ +T+ +++ ++ K + R+ A +A Sbjct: 155 DLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEAR 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 261 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 237 >gi|312200653|ref|YP_004020714.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231989|gb|ADP84844.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 203 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LTGRE + L +G T +IA L +S TV NY+++ + KT + R Sbjct: 143 LTGRERDVLVAARDGATVADIAGRLFLSEGTVRNYLSAAIAKTGARNR 190 >gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda FL6-60] Length = 215 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE++ L ++ G ++ +IA L IS TV +I +++RK ++R A Sbjct: 154 DLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAA 205 >gi|290958801|ref|YP_003489983.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648327|emb|CBG71438.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 220 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +T RE + L ++ G T+ EIA L IS +TV ++AS+M K + R Sbjct: 156 VTAREEQVLLSVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNR 203 >gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + +++EG ++DEIA L +S TV ++ M K + R+ + +A R+ + Sbjct: 161 LTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGARDRAQLVVFAHRSGL 220 >gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++LT RE E L +++G ++ EIA L + T+ ++A+++ K + R+ A+ A + Sbjct: 155 YDLTEREQEVLRLMAKGLSNAEIATELVLGVQTIKTHVANLLGKLGARDRTQAVILAYES 214 Query: 244 NIV 246 V Sbjct: 215 GFV 217 >gi|152981441|ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281518|gb|ABR89928.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 26/47 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+GRE E L I EGK + IA LGIS TV + A I K KT Sbjct: 142 LSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHIFDKMNVKT 188 >gi|21328680|gb|AAM48686.1| DNA-binding response regulator, LuxR family [uncultured marine proteobacterium] Length = 199 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 28/46 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L + +GK + EIAV L +S+ T+ + A I KT T+ Sbjct: 144 LTDREREVLEHLLKGKLNKEIAVDLNVSQRTIEAHRARIREKTRTR 189 >gi|117920952|ref|YP_870144.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117613284|gb|ABK48738.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 211 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G T+ +IA L +S +T+ ++ + RK +R AIA+A Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|331700012|ref|YP_004336251.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954701|gb|AEA28398.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 932 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE + L ++EG + EIA L +S TV ++ ++ KT ++ R+ +A A R Sbjct: 872 VTSRETDVLLLVAEGCGNREIAERLFLSPRTVEKHVERLLAKTGSQRRAELVAAATR 928 >gi|320322715|gb|EFW78808.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330500|gb|EFW86479.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330873726|gb|EGH07875.1| LuxR family DNA binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 258 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S+G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243 >gi|297158850|gb|ADI08562.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 231 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +LT +E L I EG T+ I L ++ T+ NY++ ++ K + RS A AY Sbjct: 132 RSADLTVQERRILLLIGEGLTNRAIGERLHLAEKTIKNYVSGLLAKLGMERRSQAAAYVA 191 Query: 242 R 242 R Sbjct: 192 R 192 >gi|288958810|ref|YP_003449151.1| two-component response regulator [Azospirillum sp. B510] gi|288911118|dbj|BAI72607.1| two-component response regulator [Azospirillum sp. B510] Length = 223 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M S G +LT R+ + L + +GK++ +IA LG++ TV ++ +I+R + Sbjct: 152 MEDSAASGGGNGDQLTPRQRDVLVRLRDGKSNKQIAHELGLTEGTVKVHVTAILRHLGVR 211 Query: 232 TRSGA 236 R+ A Sbjct: 212 NRTQA 216 >gi|326315443|ref|YP_004233115.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372279|gb|ADX44548.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 254 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G L+ RE + L I+ G ++ EIA L I+ TV ++ I+RK +R A YA Sbjct: 189 GGASPLSPREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAVYA 248 >gi|255523112|ref|ZP_05390084.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|255513227|gb|EET89495.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] Length = 821 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 I L Y N+ S + + +L+ RE+E LT +G EIA L IS TV ++ Sbjct: 741 IDLSKQYNENILSSNE----EKVKLSQREIEILTLTVKGLKRSEIAAKLNISEGTVKTHL 796 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +I +K + AI A IV Sbjct: 797 QNIYKKLQVSGKFEAIKIAQMYGIV 821 >gi|182437835|ref|YP_001825554.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778470|ref|ZP_08237735.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466351|dbj|BAG20871.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658803|gb|EGE43649.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L +S+G + +IA L IS TV ++ I K TR+GA++ A Sbjct: 153 LTDRERDILAQLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVA 207 >gi|154484706|ref|ZP_02027154.1| hypothetical protein EUBVEN_02423 [Eubacterium ventriosum ATCC 27560] gi|149734554|gb|EDM50471.1| hypothetical protein EUBVEN_02423 [Eubacterium ventriosum ATCC 27560] Length = 141 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 179 HWGKDFELTGREVECL-TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ++ + F L+ RE E L T + K EIA L ISR + +I+++ KT TK+R G I Sbjct: 70 NFVQQFSLSKRECEVLETLLKSDKNVKEIAQELYISRAALYRHISNMNEKTDTKSREGLI 129 Query: 238 AY 239 + Sbjct: 130 KF 131 >gi|148544128|ref|YP_001271498.1| two component LuxR family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531162|gb|ABQ83161.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri DSM 20016] Length = 217 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G L+ RE E L I G T+ EIA + IS TV + IM+K + + + Y Sbjct: 149 LGNYVALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHY 208 Query: 240 AVRNNIV 246 AV++ +V Sbjct: 209 AVKHRLV 215 >gi|88811077|ref|ZP_01126333.1| two-component system response regulator [Nitrococcus mobilis Nb-231] gi|88791616|gb|EAR22727.1| two-component system response regulator [Nitrococcus mobilis Nb-231] Length = 234 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L + +G ++ IA LG+S+ TV + A IMRKT + I A+R ++ Sbjct: 145 LTAREWEVLIPMIKGSSNRMIAGELGLSKKTVEAHRARIMRKTEATNLAELIRIALRIDL 204 Query: 246 V 246 + Sbjct: 205 L 205 >gi|332292518|ref|YP_004431127.1| two component transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] gi|332170604|gb|AEE19859.1| two component transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] Length = 212 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE+E L +S GK + EIA L I+ TV+ Y +++K + + I +A Sbjct: 149 KLSSREIEVLNLLSNGKRNKEIAAELDINEKTVSTYKMRLLKKLEAQNVAELIKHA 204 >gi|307292969|ref|ZP_07572815.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306881035|gb|EFN12251.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 263 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE +C ++ GK+ EI+ ILG+S +V +++ ++ RS +A A+ Sbjct: 179 LTRREAQCTALVAVGKSDWEISQILGLSETSVRYFVSHAKQRYGVYKRSELVARAL 234 >gi|300172495|ref|YP_003771660.1| xylose isomerase [Leuconostoc gasicomitatum LMG 18811] gi|299886873|emb|CBL90841.1| xylose isomerase [Leuconostoc gasicomitatum LMG 18811] Length = 448 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR-----NTVNNYIASIM 225 N + S+D G DFE ++ L +E KT DEI L R +T+NNYI S++ Sbjct: 387 NRYASFDSGIGADFEAGKVTLKDLAAYAENKTDDEINATLQSGRQEQIKSTLNNYIFSVL 446 Query: 226 RK 227 + Sbjct: 447 GR 448 >gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 222 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 158 DLTERETEVLVLIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 245 IV 246 +V Sbjct: 218 LV 219 >gi|256377650|ref|YP_003101310.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921953|gb|ACU37464.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 206 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE L ++EG+ + EIA L S TV + I R+ + R+ A+AYA+R + Sbjct: 146 LSERERAVLALVAEGRETGEIAKELCYSPRTVTTVVHDITRRFRLRNRAHAVAYALRAGL 205 >gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] Length = 237 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++R A Sbjct: 176 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 227 >gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 249 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + T RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 186 IDFTAREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEH 245 Query: 244 NI 245 + Sbjct: 246 GL 247 >gi|313203941|ref|YP_004042598.1| transcriptional regulator [Paludibacter propionicigenes WB4] gi|312443257|gb|ADQ79613.1| transcriptional regulator [Paludibacter propionicigenes WB4] Length = 201 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV ++ +I RK + +G YA+ N + Sbjct: 133 LSAREKEIIICVVKGLTNKEIAQTLFLSTHTVISHRRNITRKLEIHSTAGLTVYAIMNKL 192 Query: 246 V 246 + Sbjct: 193 I 193 >gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 215 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L S+G E+A L I+ TV +++S+ K K ++ A+ A++N Sbjct: 142 QLSPREREVLLLSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNKTEALIIALKNG 201 Query: 245 IV 246 I+ Sbjct: 202 II 203 >gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E + ++G ++EIA L IS T +I+ M K A + R+ + YA Sbjct: 151 DERLTNREREVVVLAAQGLNNEEIAERLVISPTTAKTHISRAMIKLACRDRTQLVVYAYE 210 Query: 243 NNIV 246 + ++ Sbjct: 211 SGLI 214 >gi|227823159|ref|YP_002827131.1| putative two component transcriptional regulator [Sinorhizobium fredii NGR234] gi|227342160|gb|ACP26378.1| putative two component transcriptional regulator [Sinorhizobium fredii NGR234] Length = 213 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE E L ++ G ++ +IA GIS NTV ++ ++ K + R+ A+A Sbjct: 149 QLTARETELLGMLANGWSNTQIASRTGISENTVKYHLKNLYDKLEVRNRAMAVA 202 >gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 249 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG + EIA L + TV +++ ++ K + R A+ +A I Sbjct: 184 LTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGI 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|149371561|ref|ZP_01890977.1| two component transcriptional regulator, LuxR family protein [unidentified eubacterium SCB49] gi|149355188|gb|EDM43748.1| two component transcriptional regulator, LuxR family protein [unidentified eubacterium SCB49] Length = 211 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +L+ REVE L +S GK + +IA L I+ TV+ Y +++K Sbjct: 150 KLSSREVEVLNLLSSGKRNKDIATALKINEKTVSTYKTRLLKK 192 >gi|70732244|ref|YP_262000.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68346543|gb|AAY94149.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 205 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT R+ E L I++GKT+ EIA L IS TV +++S++ +R+ A Sbjct: 146 QLTTRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLHTLKVPSRAAA 197 >gi|52082321|ref|YP_081112.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787713|ref|YP_093542.1| hypothetical protein BLi04036 [Bacillus licheniformis ATCC 14580] gi|52005532|gb|AAU25474.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52350215|gb|AAU42849.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 210 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LL KG ++ D GLL + + S D H LT E++ L ++ GKT+ Sbjct: 116 ILLCLKGAVLFPD-----GLLQKLRLDSDLSVDEH------LTDTELDILQKVASGKTNK 164 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S V +++ I +K +R A+ N++ Sbjct: 165 EIAADLQMSTRNVEYHLSKIYKKLKVTSRYCAVKKGTMLNLI 206 >gi|38233207|ref|NP_938974.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199466|emb|CAE49117.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 231 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+E L ++ G T EIA L IS TV + ++I+RKT R Sbjct: 171 LTRRELEVLKLLARGYTYKEIAAELFISVKTVETHASNILRKTQQSNR 218 >gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1] gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1] Length = 213 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE + ++EG + EIA L +S TV N+I++I++K K R+ Sbjct: 155 LTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRT 203 >gi|298250652|ref|ZP_06974456.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548656|gb|EFH82523.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 54 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L ++ G+T E+A L +SRNT+ ++SI RK R+ AIA A R Sbjct: 2 LRLLAAGQTYVEMAQTLIVSRNTIKTQVSSIYRKLGVSRRAEAIALAQR 50 >gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 216 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G D L+ RE++ L + +G + +IA L IS+NTV+ + I+ K + + Sbjct: 146 EQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSMAELTR 205 Query: 239 YAVRNN 244 YA+R Sbjct: 206 YAIREG 211 >gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 178 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L + +G + EIA LG+S TV ++++++ K +R+ IA Sbjct: 121 LTSRESEVLQLVRKGMANKEIARRLGLSEKTVKFHVSNVLAKAHVASRAQLIA 173 >gi|254741101|ref|ZP_05198789.1| DNA-binding response regulator, LuxR family protein [Bacillus anthracis str. Kruger B] Length = 212 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKCLFTERELSII 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205 >gi|94313637|ref|YP_586846.1| Two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357489|gb|ABF11577.1| Two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 264 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE L ++EG+++ ++ + + +S T+ Y AS+MRK Sbjct: 156 LTARERSVLKLVAEGRSNRQVGIYMNLSPKTIEKYRASLMRK 197 >gi|326559661|gb|EGE10074.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 46P47B1] gi|326559921|gb|EGE10320.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 103P14B1] gi|326561209|gb|EGE11574.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 7169] gi|326566300|gb|EGE16451.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 12P80B1] gi|326567904|gb|EGE18001.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC1] gi|326569517|gb|EGE19577.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC8] gi|326572718|gb|EGE22704.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC7] gi|326573892|gb|EGE23844.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 101P30B1] gi|326577343|gb|EGE27230.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis O35E] Length = 218 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE++ I++G ++ I LGI+ +TV ++ I+ K +TR +AV Sbjct: 157 HELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214 >gi|320325633|gb|EFW81695.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea str. B076] Length = 208 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 225 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ EC+ ++ GKT EI+ ILGI + TV ++ Sbjct: 157 LTERQAECVALVARGKTDWEISQILGIGQETVIQHV 192 >gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 234 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 171 IDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 230 Query: 244 NI 245 + Sbjct: 231 GL 232 >gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E LT ++ G ++ EIA L +S TV ++ I+ K + R A+ A Sbjct: 160 LTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLA 214 >gi|289644029|ref|ZP_06476128.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289506154|gb|EFD27154.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 73 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E + G +++I L IS TV ++I +I+RK RS AIA +R+ Sbjct: 11 LTSREREVADLMCAGLPNEQIGERLVISPATVKSHIRAILRKLGAANRSHAIAIHLRH 68 >gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24] gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans TK24] gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E +++GK+ EIA L +S TV ++ K + R+ +A+A R+ + Sbjct: 159 LTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 218 Query: 246 V 246 Sbjct: 219 A 219 >gi|121596081|ref|YP_987977.1| two component LuxR family transcriptional regulator [Acidovorax sp. JS42] gi|222112237|ref|YP_002554501.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|120608161|gb|ABM43901.1| two component transcriptional regulator, LuxR family [Acidovorax sp. JS42] gi|221731681|gb|ACM34501.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 209 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ GK +IA L +S TV+ Y A ++ K + YA+RN + Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLKLANNAELTVYAIRNRL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|17549731|ref|NP_523071.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431986|emb|CAD18663.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 232 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F LT RE + ++ G IA LGISR+TV ++ + RKT T Sbjct: 169 FHLTRREADVADLLARGAGPALIARTLGISRDTVRTHLKHVYRKTNTH 216 >gi|332883601|gb|EGK03882.1| hypothetical protein HMPREF9456_01423 [Dysgonomonas mossii DSM 22836] Length = 292 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE++ L I+ G + E+A L IS NTV ++ +I K KT SG I Y + Sbjct: 225 LSERELDVLRLIALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIFYCI 280 >gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 207 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L ++ G + EIA L IS TV ++ I K TR+GA+A A Sbjct: 146 LTDRERDILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVA 200 >gi|317127262|ref|YP_004093544.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472210|gb|ADU28813.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 222 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 28/56 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L RE E L I +GK + EIA L +S T+ NY +SI +K R + Y Sbjct: 160 ISLYEREKEILAKIMDGKKNSEIARELYLSIGTIKNYTSSIYKKIGVSKRKELVEY 215 >gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 218 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G ++ EIA L IS TV ++ + K K R+ A+A A I Sbjct: 157 LSVREREVLRLVARGTSNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGI 216 Query: 246 V 246 + Sbjct: 217 L 217 >gi|73541219|ref|YP_295739.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118632|gb|AAZ60895.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 383 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K F LT E+E + +G T DE A LGI +NT ++ I KT TR + + Sbjct: 317 KLFRLTPTEIELALLMMDGLTLDEAAGRLGIKKNTARAHLRGIFAKTGA-TRQAVLVKTL 375 Query: 242 RNNIV 246 +++V Sbjct: 376 LSSVV 380 >gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G D L+ RE+E L I++G T+ EI L I+ TV ++++I+ K R A Sbjct: 144 QAGADNPLSEREMEVLKLIADGLTNAEIGRRLYIASGTVRVHVSNIIAKLGVNDRVQAAV 203 Query: 239 YAVRNN 244 A+R Sbjct: 204 RALREG 209 >gi|298246648|ref|ZP_06970453.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549307|gb|EFH83173.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 920 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++EG ++ IA L +S TV ++ S+ K A R+ A+A A Sbjct: 860 LTPREQEVLYLLAEGASNQVIAERLVVSLTTVKKHVGSLFLKLAADNRTHAVALA 914 >gi|284042706|ref|YP_003393046.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946927|gb|ADB49671.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 81 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT RE+E L +++G + IA LGI+ TV ++ ++ R+ R A Y Sbjct: 15 GRLAALTPRELEVLRLVTKGDRTARIAQQLGITEPTVKRHLTNLYRRLDVTNRVQAATYY 74 Query: 241 VRN 243 V++ Sbjct: 75 VQH 77 >gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae BGR1] gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1] Length = 273 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT E L W +GKTS E+A IL +S TVN ++ +I+ K T ++ Sbjct: 212 LTEMEKTILRWTVDGKTSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260 >gi|238020554|ref|ZP_04600980.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147] gi|237867534|gb|EEP68540.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147] Length = 224 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++ G ++ IA L ++ +T+ ++ +I+RK +R A +A+++ Sbjct: 150 QLTPRELETLGHLAAGYSNKAIAKNLNLAESTIKVHVQNILRKLKLDSRVQAAVFAIQHK 209 Query: 245 I 245 + Sbjct: 210 V 210 >gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 500 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + A+ A+ Sbjct: 437 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVSNKEEAVQKALEI 496 Query: 244 NIV 246 I+ Sbjct: 497 GII 499 >gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 225 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT E++ + +++ G + EIA L +S+ TV +++++++ KT R+ +A+ Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221 Query: 243 NNIV 246 N + Sbjct: 222 NQMA 225 >gi|167646051|ref|YP_001683714.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348481|gb|ABZ71216.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 77 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+EC+ + G T+ E A + ++ TV ++ + MRK + A+ A++ + Sbjct: 15 LTAREIECIRLAALGLTTGETAQRIQVAERTVEFHLGNAMRKLGATNKLRAVVIAMQRKL 74 Query: 246 V 246 + Sbjct: 75 I 75 >gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brevibacterium linens BL2] Length = 207 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ +T +++G + E+A L ++ TV +++ I+ K + R+ + A + Sbjct: 142 QLTDREIDVMTLVAKGHANAEVAEHLFLAEQTVKTHVSRILSKLGLRDRTQIVVAAYESG 201 Query: 245 IV 246 +V Sbjct: 202 LV 203 >gi|296112985|ref|YP_003626923.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis RH4] gi|295920679|gb|ADG61030.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis RH4] gi|326574060|gb|EGE24009.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis CO72] Length = 218 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE++ I++G ++ I LGI+ +TV ++ I+ K +TR +AV Sbjct: 157 HELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214 >gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++ EIA L +S +TV ++ +++ K + R A+ A + Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 213 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE + ++EG + EIA L +S TV N+I++I++K K R+ Sbjct: 155 LTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRT 203 >gi|261346507|ref|ZP_05974151.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM 4541] gi|282565500|gb|EFB71035.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM 4541] Length = 222 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%) Query: 151 GRIILRDRLWE----IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 G +LRD+ + + L A ++DV T +E E + + EG ++ I Sbjct: 120 GISVLRDKPFTPQEVVRLNAILPIAELMTFDVLPDSLVSYTPKEQEIIHLVREGASNKRI 179 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 A++LGIS +TV ++ +I K R+ ++ Sbjct: 180 ALLLGISLSTVKTHLRNIFTKANVSNRTELVS 211 >gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + G LT RE++ L ++ G + EIA L IS TV ++ I K TR+GA+ Sbjct: 138 MRGGGRPSLTERELDILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAV 197 Query: 238 AYA 240 + A Sbjct: 198 SVA 200 >gi|261409608|ref|YP_003245849.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286071|gb|ACX68042.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 216 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 F LT E + I+EG ++ EIA L +S TV NY+ I+ K + R+ Sbjct: 154 FGLTPAEKRVVALIAEGLSNKEIAAQLYLSEGTVKNYVTEILGKLNLRDRT 204 >gi|167565819|ref|ZP_02358735.1| DNA-binding response regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167572912|ref|ZP_02365786.1| DNA-binding response regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 215 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y A I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALNVSAKTVSTYKARILEKMQMPHDAALVRYAMRHKL 208 >gi|89900824|ref|YP_523295.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345561|gb|ABD69764.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 212 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/60 (25%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++T R+ E L + +G+++ EI+ L ++ +T N++ +++R K+R+ + A R Sbjct: 145 QVTPRQAEVLALLLDGRSNKEISEALALTDDTTKNHVTALLRAFDVKSRTQLVLAASRQG 204 >gi|320534770|ref|ZP_08035192.1| putative nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 171 str. F0337] gi|320133012|gb|EFW25538.1| putative nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 171 str. F0337] Length = 223 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL R + T + EG T+ IA LGIS NTV Y++ ++ + +R+ IA A+ N Sbjct: 165 ELPPRLQDIYTCLLEGLTNRRIARRLGISENTVRIYVSEVLHRLGHTSRTELIAAALGN 223 >gi|296389611|ref|ZP_06879086.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 225 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E ++ G+ E+A LG+S TV+N+++ + +K T++ + A+ + + Sbjct: 148 LTRREFEIFRLLARGQALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRAIDSGV 207 Query: 246 V 246 + Sbjct: 208 L 208 >gi|218680259|ref|ZP_03528156.1| transcriptional regulator [Rhizobium etli CIAT 894] Length = 234 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ GKT +E+A + G+ N+V + I ++ T IA A+R + Sbjct: 174 LDPKEGTYLRWIAVGKTMEEVADLEGVKYNSVKSKIEETRKRLGIHTMPHLIALAIRAGL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 212 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G ++ EIA L IS TV ++ + K K R+ A+A A I Sbjct: 151 LSAREREVLALVAKGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGI 210 Query: 246 V 246 + Sbjct: 211 L 211 >gi|196232781|ref|ZP_03131632.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223241|gb|EDY17760.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 215 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE+E L I G+T+ EIA L + T++ Y A I K S + +A+R Sbjct: 153 LTDRELEVLELIGRGRTTREIATKLELGIATIDTYRARIKEKMDFNNASELLHFAIR 209 >gi|21222228|ref|NP_628007.1| two-component system response transcriptional regulator [Streptomyces coelicolor A3(2)] gi|5457253|emb|CAB46941.1| putative two-component system response transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 218 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A A+ R Sbjct: 156 LTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 212 >gi|325001931|ref|ZP_08123043.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 217 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ +E L I++G T+ +I L ++ TV NY++SI+ K R+ A YAV Sbjct: 155 LSPQEQRILELIADGLTNRQIGGELHLAEKTVKNYVSSILHKLGYARRTEAAVYAV 210 >gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 226 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE + L ++ G EIA L IS TV +++S++RKT T R Sbjct: 165 QLTKRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVLRKTQTSNR 213 >gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 226 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L ++EG ++ EIA L +S TV ++ +++ K + R A+ A + Sbjct: 161 DLTPRETDVLRAVAEGLSNAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAYESG 220 Query: 245 IV 246 +V Sbjct: 221 LV 222 >gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G T+ E A L IS TV ++ K K R+ A+A A + Sbjct: 146 LSQREIEVLNLVARGSTNKEAAKKLFISEATVKTHLLHAYAKLGVKDRAAAVAVAFERGL 205 Query: 246 V 246 + Sbjct: 206 L 206 >gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] Length = 215 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L I++G + EIA +L +S NT+ + S+M K + + A+ Sbjct: 149 QLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDLVLKAINLG 208 Query: 245 IV 246 I+ Sbjct: 209 II 210 >gi|170728440|ref|YP_001762466.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169813787|gb|ACA88371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 797 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ +E + +S+ + + EIA+ L IS TV ++ ++ RK K+R A+A N Sbjct: 736 LSIKESAIMALVSQQRRNKEIAIELDISEQTVKFHLKNVYRKLGVKSRKLAVAVLAEN 793 >gi|332140533|ref|YP_004426271.1| putative LuxR-family transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327550555|gb|AEA97273.1| putative LuxR-family transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 198 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L+ I +G ++ EIA LGI+ TV Y+ +++ K K R Sbjct: 134 LTNRERDVLSCILDGLSNKEIARELGITERTVKEYVGTLLNKFQAKDR 181 >gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 206 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L + G + EIA L IS TV ++ I K TR+GA+A A Sbjct: 145 LTDRERDILGQLGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVA 199 >gi|311893888|dbj|BAJ26296.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 117 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + G ++ E+A L +S TV ++A I K + R+ A+ A + Sbjct: 50 LTPRELEVLALLGRGLSTTELAGELTLSEATVKTHVARIFAKLGLRDRAQAVVVAYETGL 109 Query: 246 V 246 V Sbjct: 110 V 110 >gi|307300268|ref|ZP_07580048.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307321145|ref|ZP_07600549.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306893220|gb|EFN24002.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904434|gb|EFN35018.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 262 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L I G + IA LG+S NTV ++ +I +K + R+ A + RN+ Sbjct: 188 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRND 246 >gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ EC+ ++ GKT EI+ ILGI + TV ++ Sbjct: 180 LTERQAECVALVARGKTDWEISQILGIGQETVIQHV 215 >gi|221633529|ref|YP_002522754.1| putative two-component system response regulator [Thermomicrobium roseum DSM 5159] gi|221156816|gb|ACM05943.1| putative two-component system response regulator [Thermomicrobium roseum DSM 5159] Length = 257 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATK 231 F VH + LT RE E L + +G TS+ E+A L IS NTV ++ +IM K + Sbjct: 173 FGREGVHRPEGPALTERERELLELLVQGVTSNRELAQRLFISENTVKYHLRNIMTKLHLE 232 Query: 232 TRSGAIAYAVRNNIV 246 R+ IAYA+R +V Sbjct: 233 NRAQVIAYALRTGLV 247 >gi|152987067|ref|YP_001346289.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150962225|gb|ABR84250.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 212 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + G TS E+A L +S TV+ Y A +MR+ +T + + A+ + Sbjct: 143 LTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMRRMQAQTLADLVGMAIAAGL 202 Query: 246 V 246 V Sbjct: 203 V 203 >gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] Length = 248 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LT R+ EC+ ++ GKT EI+ ILGI + TV ++ Sbjct: 180 LTERQAECVALVARGKTDWEISQILGIGQETVIQHV 215 >gi|54025844|ref|YP_120086.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017352|dbj|BAD58722.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 183 DFELTG-----REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D EL+G R+ E LT + G+ + +A + G+S TVN+Y+ I +K A R Sbjct: 138 DPELSGVGLSPRQEEVLTLYASGEKASRVARLTGLSEQTVNDYLGRIRQKYADAGR 193 >gi|17158658|ref|NP_478169.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|17134607|dbj|BAB77165.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 240 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE++ +++G T+ EIA L IS+NTV + I RK R+ +A Sbjct: 176 EISLTPRELQMAALVAKGLTNAEIAAELWISQNTVKQTLKRIFRKLDVSARAEMVA 231 >gi|120598493|ref|YP_963067.1| response regulator receiver protein [Shewanella sp. W3-18-1] gi|120558586|gb|ABM24513.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] Length = 211 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G T+ +IA L +S +T+ ++ + RK +R AIA+A Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 241 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L I G T+DEIA L + TV +I S++ K R+ A A+R+ + Sbjct: 180 LTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQALRSGL 239 Query: 246 V 246 V Sbjct: 240 V 240 >gi|329935673|ref|ZP_08285479.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329304851|gb|EGG48723.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Query: 162 IGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +G L + + H G L REV+ L +++G + EIA L S T+ N Sbjct: 135 LGRLIEQVGTLHRGAAGHSGAPAVGLLPREVDVLRLVADGLDTSEIAGKLSYSERTIKNV 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + + + + R+ A+AYA+R + Sbjct: 195 MHGLTTRLHLRNRAHAVAYALREGYI 220 >gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 218 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 13/131 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLM-----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 G NR+ L +R G+M L P+ + + + GLL + ++ S Sbjct: 84 GNPNRFNLLEL----VRTGVMGCLPLRLLPQQIVSAVELVVGAGLLCLPRPDLKTSLGTE 139 Query: 180 WGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 G+ L+ RE E L ++ ++ EIA L +S +TV ++ +I RK + R+ Sbjct: 140 TGESKGTFSILSRREEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTE 199 Query: 236 AIAYAVRNNIV 246 A+A A + +V Sbjct: 200 AVAAAYQLGLV 210 >gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 231 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + +A+ + Sbjct: 168 IDLTPREQSVLNLVAQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227 Query: 244 NI 245 + Sbjct: 228 GL 229 >gi|302879267|ref|YP_003847831.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302582056|gb|ADL56067.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 211 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I GKT E+A +L +S TV+ Y + I+ K + + Y ++N + Sbjct: 149 LSDREYQVLRLIGSGKTVSEVAKLLSLSVKTVSTYRSHILDKMNLRNNAELTLYVIQNGL 208 Query: 246 V 246 + Sbjct: 209 M 209 >gi|227111773|ref|ZP_03825429.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 210 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L ++ G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 150 LTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAA 200 >gi|91790427|ref|YP_551379.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91699652|gb|ABE46481.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 236 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L IS G ++ IA L I+ TV ++ I+RK +R A YA +++ Sbjct: 176 LSAREREVLARISHGDSNKVIARKLDIAETTVKIHVQHILRKLQLSSRVQAAVYAAAHDL 235 >gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 201 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238 LT RE E L EG+++ +IA +L +S TV NY++ +K A + +G IA Sbjct: 141 LTDREREILRLAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEAGRIA 195 >gi|312959788|ref|ZP_07774304.1| two-component system, NarL family [Pseudomonas fluorescens WH6] gi|311285954|gb|EFQ64519.1| two-component system, NarL family [Pseudomonas fluorescens WH6] Length = 205 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 181 GKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 G++ EL RE+ L ++G+T+ EIA + +S TV+ Y +M+K K+ Sbjct: 136 GRELELFKAVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLQAKSLVEL 195 Query: 237 IAYAVRNNIV 246 I A RN +V Sbjct: 196 IEMAKRNALV 205 >gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 228 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + S DVH +D LT RE+E L ++ G ++ E+A L +S TV +I I+ Sbjct: 140 AQREEAVPSADVH--RDLSGLTPRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRIL 197 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K + R A+ A + ++ Sbjct: 198 SKLELRDRVQAVVLAYESGLI 218 >gi|257792653|ref|YP_003183259.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257476550|gb|ACV56870.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 517 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QA+M K GK F L+ RE+E + + G T +A L I++ TV+ +I I KT Sbjct: 442 QASM-KHNAEEMGKQFLLSDREIEVMALYALGYTQKRVAEELFITQGTVHAHIKRIYAKT 500 Query: 229 ATKTRSGAIAY 239 +R + Y Sbjct: 501 GLHSRQEILDY 511 >gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C] gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C] Length = 220 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +T RE + L ++ G T+ EIA L IS +TV ++AS+M K + R Sbjct: 156 VTAREEQVLLAVARGLTNTEIADALRISLSTVKTHLASLMAKLGARNR 203 >gi|167839791|ref|ZP_02466475.1| DNA-binding response regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 215 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S T++ Y A I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALDVSAKTISTYKARILEKMQMPHDAALVRYAIRHKL 208 >gi|167038926|ref|YP_001661911.1| ribokinase-like domain-containing protein [Thermoanaerobacter sp. X514] gi|166853166|gb|ABY91575.1| PfkB domain protein [Thermoanaerobacter sp. X514] Length = 380 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 183 DFELTGREVECLTWISEGK--TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L +I + + +E+A ++GISR+ V +IA++M+K R Y Sbjct: 13 DVALTQREKEILRFIKKNPMISQEELAQLMGISRSAVAGHIANLMKKGFILGR----GYV 68 Query: 241 VRN 243 VR+ Sbjct: 69 VRD 71 >gi|146293428|ref|YP_001183852.1| response regulator receiver protein [Shewanella putrefaciens CN-32] gi|145565118|gb|ABP76053.1| transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] gi|319426731|gb|ADV54805.1| transcriptional regulator, LuxR family [Shewanella putrefaciens 200] Length = 211 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G T+ +IA L +S +T+ ++ + RK +R AIA+A Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|311894237|dbj|BAJ26645.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 206 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L ++G EIA L +S TV NY+A+ K +TR A+ A Sbjct: 141 LTAREAQALALAADGCEPREIARRLHLSAGTVRNYLAAAQLKLDARTRLDAVRIA 195 >gi|254884986|ref|ZP_05257696.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|319640388|ref|ZP_07995112.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|254837779|gb|EET18088.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|317387991|gb|EFV68846.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 256 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 F LTGRE+E L I G S EIA L IS +TV+ + +++RK + AI Sbjct: 193 FGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAI 246 >gi|222106434|ref|YP_002547225.1| two component response regulator [Agrobacterium vitis S4] gi|221737613|gb|ACM38509.1| two component response regulator [Agrobacterium vitis S4] Length = 779 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E++ LT ++EG ++ IA GIS TV ++ ++ RK R AIA A Sbjct: 718 LTQQELKILTMLAEGASNKLIARNSGISEPTVKFHLKNVYRKLGCSRRHEAIAAA 772 >gi|153011389|ref|YP_001372603.1| Glycerone kinase [Ochrobactrum anthropi ATCC 49188] gi|151563277|gb|ABS16774.1| Glycerone kinase [Ochrobactrum anthropi ATCC 49188] Length = 694 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/30 (53%), Positives = 22/30 (73%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA 222 C + +G+T EIA I+GISR TVN+Y+A Sbjct: 34 CWLYYEDGRTQGEIAEIMGISRATVNSYLA 63 >gi|330984843|gb|EGH82946.1| LuxR response regulator receiver [Pseudomonas syringae pv. lachrymans str. M301315] Length = 208 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|289770570|ref|ZP_06529948.1| two-component system response transcriptional regulator [Streptomyces lividans TK24] gi|289700769|gb|EFD68198.1| two-component system response transcriptional regulator [Streptomyces lividans TK24] Length = 218 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A A+ R Sbjct: 156 LTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 212 >gi|228919418|ref|ZP_04082785.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840249|gb|EEM85523.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 217 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDE 205 +G I+L ++ + A AN ++ + ++ + LT RE+E I EGK++ Sbjct: 119 EGNILLNPKITLKVVKALNSANYKETVKAEFNENKQPSNLLTPRELEVAKHIMEGKSNKA 178 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I+ L I+ TV NY++ I+ K R+ Y Sbjct: 179 ISKELFITEGTVKNYVSRILEKLELNNRTELTLY 212 >gi|239817077|ref|YP_002945987.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803654|gb|ACS20721.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 210 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKTLSLSVKTVSTYRTRLMEKMNLSSNSDLTYYALKNK 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|163853743|ref|YP_001641786.1| regulatory protein LuxR [Methylobacterium extorquens PA1] gi|218532601|ref|YP_002423417.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240141169|ref|YP_002965649.1| putative two-component transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|254563682|ref|YP_003070777.1| two-component LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|163665348|gb|ABY32715.1| regulatory protein LuxR [Methylobacterium extorquens PA1] gi|218524904|gb|ACK85489.1| two component transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] gi|240011146|gb|ACS42372.1| putative two-component transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|254270960|emb|CAX26965.1| putative two-component transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 253 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REV L ++ G+++ IA L I+ TV ++ +I+RK K R+ A +A+ I Sbjct: 159 LSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGI 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|148557095|ref|YP_001264677.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502285|gb|ABQ70539.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 855 Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L +++G ++ IA L ++ NTV ++ +I K +R A A A R+ Sbjct: 796 QLTDREAEILAHLADGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAACAFRD 854 >gi|221065359|ref|ZP_03541464.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|299531846|ref|ZP_07045247.1| two component LuxR family transcriptional regulator [Comamonas testosteroni S44] gi|220710382|gb|EED65750.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|298720166|gb|EFI61122.1| two component LuxR family transcriptional regulator [Comamonas testosteroni S44] Length = 210 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + ++ G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 148 QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L + G T+DEIA L +S T +++ IM K + R+ + A + + Sbjct: 217 LTAREHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGARDRTQLVITAYESGM 276 Query: 246 V 246 + Sbjct: 277 I 277 >gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L ++ G + IA L IS +TV N+I+SI+ K R A AVR+ Sbjct: 154 QLSPREQEVLRLVAGGMDNAAIAQELFISPHTVKNHISSILTKLHVANRIQAAVRAVRDE 213 Query: 245 IV 246 I+ Sbjct: 214 IL 215 >gi|254283973|ref|ZP_04958941.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR51-B] gi|219680176|gb|EED36525.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR51-B] Length = 206 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E + +G + EIA +LG+S TV ++ +I K + R Sbjct: 146 LTHREYEVAALVGKGANNKEIAELLGVSERTVKAHLTAIFEKLELRDR 193 >gi|149276764|ref|ZP_01882907.1| hypothetical protein PBAL39_15329 [Pedobacter sp. BAL39] gi|149232433|gb|EDM37809.1| hypothetical protein PBAL39_15329 [Pedobacter sp. BAL39] Length = 461 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Query: 17 EQRTSFVSHLPTRSDLLARMIPLDCTVSW-TMRMYALTEY------VGASHFLLVRWDLF 69 E + SF H P+ +A+ L+ V+W + + T Y + + FLL+ WD + Sbjct: 25 ENKRSFELHNPSTKIYVAKNPFLENDVAWLSSDLSIFTWYRLNRSSISSKRFLLIEWDCW 84 Query: 70 QEQKLDSIVSSDWPFDLV-RCMALSEKDKYY 99 + L+S S W D+V C+ E+D +Y Sbjct: 85 CDVSLESYFSFAWDQDIVGPCVKYPERDDWY 115 >gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 195 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ L +++G + IA L S +TV N I +M + R+ A+A A+R + Sbjct: 135 LTPRQTAVLNLMADGHPNVAIATALSCSEHTVKNVIYDMMMRLQVNNRAHAVARAIRAGL 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|1934734|emb|CAA73019.1| FlcA [Azospirillum brasilense] Length = 215 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT R+ E L + GK++ +IA LG+S TV ++ +I + K R+ Sbjct: 154 YGLTQRQREVLDCLRAGKSNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRT 204 >gi|109898298|ref|YP_661553.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700579|gb|ABG40499.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 213 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 34/56 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 GK +LT +++ L +++G + +IA LG+S +T+ ++++++ K R+ A Sbjct: 147 GKLAQLTPHQLKVLQLMADGLLNKQIAYELGVSESTIKQHVSAVLHKLGFNNRTQA 202 >gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH DNA-binding domain [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G ++ EIA L +S +TV ++ +++ K + R A+ A + Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|300791071|ref|YP_003771362.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800585|gb|ADJ50960.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + + G T+ EI L +S +TV ++AS+ K + R A+A R+ + Sbjct: 156 LTARELDVVKAAARGLTNTEIGAELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGV 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|220917273|ref|YP_002492577.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955127|gb|ACL65511.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 210 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E ++ ++ EIA L +S TV+ Y + I+ K A ++ + + YAVR+ + Sbjct: 149 LSPRELEIFLQLAAARSVSEIAERLQLSVKTVSTYRSRILEKMALRSNAELMQYAVRHGL 208 Query: 246 V 246 Sbjct: 209 A 209 >gi|28871293|ref|NP_793912.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|66047117|ref|YP_236958.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|213970871|ref|ZP_03398994.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. tomato T1] gi|257486630|ref|ZP_05640671.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289650462|ref|ZP_06481805.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi str. 2250] gi|289676759|ref|ZP_06497649.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] gi|298488740|ref|ZP_07006769.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302059914|ref|ZP_07251455.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato K40] gi|302130513|ref|ZP_07256503.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302184715|ref|ZP_07261388.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] gi|28854543|gb|AAO57607.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|63257824|gb|AAY38920.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|213924394|gb|EEB57966.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. tomato T1] gi|298156813|gb|EFH97904.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330877330|gb|EGH11479.1| LuxR response regulator receiver [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330889570|gb|EGH22231.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori str. 301020] gi|330898580|gb|EGH29999.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937554|gb|EGH41495.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] gi|330949995|gb|EGH50255.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] gi|330966557|gb|EGH66817.1| LuxR response regulator receiver [Pseudomonas syringae pv. actinidiae str. M302091] gi|330973098|gb|EGH73164.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] gi|330981561|gb|EGH79664.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331015675|gb|EGH95731.1| LuxR response regulator receiver [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 208 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|38232721|ref|NP_938488.1| putative two-component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38198979|emb|CAE48596.1| Putative two-component system response regulator [Corynebacterium diphtheriae] Length = 219 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +T RE++ L +++G T+ EI+ LGI+ TV +I +++ K + R + + Sbjct: 156 ITRREMDVLLCVAQGLTNAEISADLGIAETTVKTHITALLAKVHARDRVALVLF 209 >gi|332528810|ref|ZP_08404787.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041876|gb|EGI78225.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 181 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 R+ E L + +G T+ EI +L +S TV N++++I+R TR+ A+ A ++ Sbjct: 110 RQEEVLRLLLDGLTNKEIGRLLDLSDETVKNHVSNILRCFGVATRTQAVLAARKHG 165 >gi|330809270|ref|YP_004353732.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377378|gb|AEA68728.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 221 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT R+ E I+EGKT+ EIA L IS TV +++S++R R+ A A Sbjct: 156 KLTSRQREVWQLIAEGKTNKEIAAALEISPFTVRIHVSSLIRALNVPNRAVAAA 209 >gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C] gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C] Length = 259 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G +DEIA L ++ TV ++ M K ++R+ A+A A + Sbjct: 189 LTNREQDVLRLVARGLGNDEIAAELVVTEATVKTHLHRTMTKLGLRSRAQAVAVAYEAGL 248 Query: 246 V 246 V Sbjct: 249 V 249 >gi|221210086|ref|ZP_03583067.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD1] gi|221170774|gb|EEE03240.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD1] Length = 215 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E + ++EG T+ EI L +S T +++ I+ K + R+ + A + Sbjct: 154 ELTDREREVMALVAEGLTNAEIGARLYLSPATARTHVSRILTKLGARDRTQLVVLAYESG 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|33601716|ref|NP_889276.1| response regulatory protein [Bordetella bronchiseptica RB50] gi|33576153|emb|CAE33232.1| response regulatory protein [Bordetella bronchiseptica RB50] Length = 224 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L I+ G T DEIA L +SR+TV ++ I RK ++ AI A Sbjct: 163 LSPREHQVLERITLGYTYDEIARDLEVSRHTVQTFVRRIYRKLQVHSKVDAINAA 217 >gi|89092784|ref|ZP_01165736.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082809|gb|EAR62029.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 223 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + ++EG+T +A + +S TV+ + +I RK S + A+R+NI Sbjct: 161 LTKRELQIFSLLAEGRTVSIVAEEMFLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNI 220 Query: 246 V 246 V Sbjct: 221 V 221 >gi|331699969|ref|YP_004336208.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954658|gb|AEA28355.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 542 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G+++ EIA L I+ TV +++++ K +R+ A A+A + + Sbjct: 482 LSPRELEVLRLVAAGRSNAEIAAELVIAEKTVARHLSNMFVKLDVGSRTAAAAFAFEHRL 541 Query: 246 V 246 + Sbjct: 542 L 542 >gi|261821966|ref|YP_003260072.1| transcriptional regulator NarP [Pectobacterium wasabiae WPP163] gi|261605979|gb|ACX88465.1| two component transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 210 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L ++ G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 150 LTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAA 200 >gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 V R G LL P +LR R+ E L A QA + V G LT RE+E L Sbjct: 115 VRRAAAGEPLLAPS---VLR-RVVERALAAEEQA----AVQVPAG----LTDRELEVLAL 162 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++ EIA L + TV ++++ M K + R+ A A R +V Sbjct: 163 VGVGLSNAEIADALHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIGLV 212 >gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 233 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + + I++GK++ EIA L ++ TV ++ I++K + R + A N + Sbjct: 169 LTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVGRILQKFGARDRVQIVVAAYENGL 228 Query: 246 V 246 V Sbjct: 229 V 229 >gi|71736868|ref|YP_273631.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557421|gb|AAZ36632.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 208 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|39935368|ref|NP_947644.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192290925|ref|YP_001991530.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39649220|emb|CAE27740.1| possible two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] gi|192284674|gb|ACF01055.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 248 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT ++E L +++ GK++ +IA +S T+ + +A I++K R+ A A+RN+ Sbjct: 180 ELTPSQLELLPYLASGKSNRQIAKERDMSEFTIKSQVAGIIQKLNVANRTQAALLAMRNS 239 >gi|85710435|ref|ZP_01041499.1| response regulator FixJ [Erythrobacter sp. NAP1] gi|85687613|gb|EAQ27618.1| response regulator FixJ [Erythrobacter sp. NAP1] Length = 208 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 E + A + M ++ D + L+ RE E L W++EG ++ IA L IS TV + Sbjct: 120 EAEIFGAARRRMIEARD----RISSLSTREREVLEWLAEGSSNKVIARELDISPRTVEIH 175 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 A++M K + + A+ + N+ Sbjct: 176 RANMMHKLGARHAAEAVRLKIEANL 200 >gi|332669983|ref|YP_004452991.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339021|gb|AEE45604.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 215 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E L ++ G+ + I+ L +S TV N++A+++ K + RS AI A Sbjct: 152 QLTDREREVLDLVAAGRDNAVISRRLSLSPKTVRNHVANVLTKLSLPDRSAAILRA 207 >gi|330977656|gb|EGH77559.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 208 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|325298413|ref|YP_004258330.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] gi|324317966|gb|ADY35857.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] Length = 190 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G + EIA L IS TV ++ +I K K+ S YAV + Sbjct: 124 DLSPREIEVLVLLTKGCINKEIAERLNISLTTVISHRKNITEKLGIKSVSALAIYAVMHG 183 Query: 245 IV 246 V Sbjct: 184 YV 185 >gi|301632710|ref|XP_002945424.1| PREDICTED: response regulator gacA-like, partial [Xenopus (Silurana) tropicalis] Length = 212 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ GK +IA L +S TV+ Y A ++ K + YA+RN + Sbjct: 152 LSERELQTLVKIASGKRLSDIADELMLSPKTVSVYRARVLEKLQLTNNAELTVYAIRNQL 211 Query: 246 V 246 V Sbjct: 212 V 212 >gi|29830688|ref|NP_825322.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607800|dbj|BAC71857.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 200 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L + ++G EIA ++ TV NY++S + K + R Sbjct: 129 AADAISAGDSPLTVREAEVLEFAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGAENRH 188 Query: 235 GAIAYA 240 A+ A Sbjct: 189 TAVRLA 194 >gi|24306039|gb|AAN52499.1| SpnR [Serratia marcescens] Length = 247 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 28/56 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE E L W S GKT +IA I GIS + V ++ +I+ K AI V Sbjct: 181 FTPRENEVLYWSSMGKTYGDIAAIAGISISMVKFHMGNIVSKLGVSNARQAIRLGV 236 >gi|330965398|gb|EGH65658.1| regulatory protein, LuxR [Pseudomonas syringae pv. actinidiae str. M302091] Length = 105 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I K + A+ A+R Sbjct: 41 QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRHKFGVTSLKAALVMAIRQG 100 >gi|319795407|ref|YP_004157047.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597870|gb|ADU38936.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 210 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + +++G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKTLSLSVKTVSTYRTRLMEKMNLSSNSDLTYYALKNK 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|256751073|ref|ZP_05491955.1| PfkB domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749979|gb|EEU63001.1| PfkB domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 380 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 183 DFELTGREVECLTWISEGK--TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE E L +I + + +E+A ++GISR+ V +IA++M+K R Y Sbjct: 13 DVALTQREKEILRFIKKNPMISQEELAQLMGISRSAVAGHIANLMKKGFILGR----GYV 68 Query: 241 VRN 243 VR+ Sbjct: 69 VRD 71 >gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4] gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4] Length = 224 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ EIA L +S TV Y++ I+ K + R A+ A R + Sbjct: 160 LTPREREVLVQLARGLSNAEIAEELVLSIETVKTYVSRILAKLDLRDRVQAVVLAYRTGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|239831167|ref|ZP_04679496.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823434|gb|EEQ95002.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 231 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT ++ LT ++EG + +IA LG+S TV +++++++K +R+ A+ Sbjct: 166 LTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQAV 217 >gi|227329494|ref|ZP_03833518.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 210 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L ++ G ++ +IA +L IS TV +I +++RK ++R A Sbjct: 150 LTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAA 200 >gi|300775501|ref|ZP_07085362.1| possible transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300505528|gb|EFK36665.1| possible transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 223 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ E++ + + EG ++ EIA L +S T++ YI + K KT+ I + V N Sbjct: 158 ELSPSEIQLMRFCYEGFSNKEIAEKLNLSTRTIDTYINRLTEKLGLKTKLHLIRFCVEN 216 >gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 224 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 161 ELTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 220 Query: 245 I 245 + Sbjct: 221 L 221 >gi|167646079|ref|YP_001683742.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348509|gb|ABZ71244.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 249 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S VH D L RE++ L ++G T E A L +SR V +++ K T ++ Sbjct: 176 SLPVHGTSDAGLNAREMQVLRLAAQGLTEMETAARLKLSRRGVQFHLSRAGAKLDTTNKT 235 Query: 235 GAIAYAVRNNIV 246 A+A A+ ++ Sbjct: 236 AAVARAISLGLI 247 >gi|33597314|ref|NP_884957.1| response regulatory protein [Bordetella parapertussis 12822] gi|33573741|emb|CAE38039.1| response regulatory protein [Bordetella parapertussis] Length = 224 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L I+ G T DEIA L +SR+TV ++ I RK ++ AI A Sbjct: 163 LSPREHQVLERITLGYTYDEIARDLEVSRHTVQTFVRRIYRKLQVHSKVDAINAA 217 >gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 886 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K+ D K L+ RE+ L ++ G T+ EIA L IS TV + +I +K K R Sbjct: 813 KASDAGSCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKNR 872 Query: 234 SGAIAYAVRNNIV 246 + A+ A + I+ Sbjct: 873 TEAVVKANISGII 885 >gi|300789933|ref|YP_003770224.1| SARP family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299799447|gb|ADJ49822.1| SARP family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 1199 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT EV ++EG+++ +IA L + R TV ++A ++ K T +RSG +A A R Sbjct: 1141 LTPIEVRIAGLVAEGRSNPDIAAELSLPRRTVQAHVARLLGKLETPSRSG-VADAFR 1196 >gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 273 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ RE + L +++G + EIA L +S TV NY+++I+ K R+ AI A Sbjct: 211 ELSHRERDILALLAQGCKNAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAILRA 266 >gi|298241311|ref|ZP_06965118.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554365|gb|EFH88229.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 214 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E L I++G+++ IA +S TV N++++I K R+ AI A Sbjct: 153 DLTEREREILLLIAQGESNAAIAKHFTLSLKTVQNHVSNIFSKLQVADRAQAIVRA 208 >gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 226 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + +G ++ EIA L IS T ++++++ K +R+ A A+R + Sbjct: 162 LTARERDILVLVGQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 219 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 159 LTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218 >gi|110681357|ref|YP_684364.1| nitrate/nitrite response regulator protein, putative [Roseobacter denitrificans OCh 114] gi|109457473|gb|ABG33678.1| nitrate/nitrite response regulator protein, putative [Roseobacter denitrificans OCh 114] Length = 210 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 35/54 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ +E E L ++EG T+ +++ L IS NTV ++++I K + + R+ AIA+ Sbjct: 147 LSRKEREILDALAEGLTNKQLSARLEISTNTVKFHLSNIFDKLSVRNRTQAIAH 200 >gi|78063367|ref|YP_373275.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971252|gb|ABB12631.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 214 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ + I G+T +IA L +S TV+ Y I+ K + + YAVR+++ Sbjct: 149 LSARELDVMRRIVAGQTVTQIATELALSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 208 >gi|319939711|ref|ZP_08014069.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811129|gb|EFW07438.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 199 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ +E+ L + G +S EIA L +S T+ NY++SI+ K + R A+ A N Sbjct: 139 LSNQEILVLQAAARGLSSKEIAQKLYLSNGTIRNYMSSILTKLTAENRLEAVRIAQEN 196 >gi|238024126|ref|YP_002908358.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237878791|gb|ACR31123.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 520 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 123 PAGMDNRYCSL--TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + C L D+ + M L +++D W L AN+ ++ Sbjct: 375 PVTIHGTECVLMAILDITDRKRSEMELVSAIETVMQDASWFSRTLIEKLANVRRANAPDA 434 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + +G + +IA L +S TV N++A+I K +R+ AI + Sbjct: 435 GAHLSDLTARECDVFEQLCKGLSDKDIAKALELSPATVRNHVATIYAKLDVHSRAEAIVW 494 Query: 240 A 240 A Sbjct: 495 A 495 >gi|237798778|ref|ZP_04587239.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021631|gb|EGI01688.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae str. 1_6] Length = 208 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|89894771|ref|YP_518258.1| hypothetical protein DSY2025 [Desulfitobacterium hafniense Y51] gi|89334219|dbj|BAE83814.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D H K LT RE+E + G S EIA L I++ TV+ +I +I+ K K+R Sbjct: 162 DPHDDKVASLTLRELEVFNLVVTGLRSKEIAEKLEITKRTVDFHIGNILLKLEAKSR 218 >gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 226 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 164 LLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 +L+A+Q AN +H + L+ RE E + I+ G T E+A L IS TV Sbjct: 140 VLSAFQNGPSANGAFGGPIHDDELDRLSNREQEVMRLIARGYTYKEVASELFISIKTVET 199 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +++S++RK RS +A IV Sbjct: 200 HMSSVLRKLQLSNRSELTRWAADRRIV 226 >gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] Length = 217 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L ISEGKT+ IA L IS TV ++ + K R+ A VR Sbjct: 155 LTDREREVLRLISEGKTNKAIARELVISPATVKAHVERCLAKLGAADRTQAAVMMVR 211 >gi|330957744|gb|EGH58004.1| LuxR response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 208 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101] Length = 236 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ T+ EIA L +S TV +++A ++ K ++R A +R + Sbjct: 170 LTERELEVLQRIAANATNPEIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIKGIRLGL 229 Query: 246 V 246 V Sbjct: 230 V 230 >gi|319764111|ref|YP_004128048.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330823614|ref|YP_004386917.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118672|gb|ADV01161.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329308986|gb|AEB83401.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 210 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + ++ G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 148 QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA + ++ TV +++ ++ K + R A+ YA + + Sbjct: 155 LTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYESGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|302543707|ref|ZP_07296049.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461325|gb|EFL24418.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 206 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D D LT RE E L ++G + EIA +S TV NY+++ K + R Sbjct: 135 AADAISAGDSPLTARETELLDLAADGASVAEIARRAALSPGTVRNYLSAAAAKLHAENRH 194 Query: 235 GAI 237 A+ Sbjct: 195 AAV 197 >gi|160897254|ref|YP_001562836.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362838|gb|ABX34451.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 210 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + ++ G+T+ +IA L +S TV+ Y +M K + S YA++N Sbjct: 148 QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 207 Query: 245 IV 246 ++ Sbjct: 208 LI 209 >gi|58584166|ref|YP_203182.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428760|gb|AAW77797.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 301 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 228 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 283 >gi|330826961|ref|YP_004390264.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329312333|gb|AEB86748.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 212 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT ++ L +++G + +IA LG++ NTV ++ +I++K A +R+ A Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAAQLGLAENTVKVHVTAILKKLACYSRTQA 199 >gi|296454490|ref|YP_003661633.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183921|gb|ADH00803.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 230 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + L+G+E + L ++G T+ EIA LGIS TV + + K ++R+ A Sbjct: 161 DTSYAHRGALSGKERDTLRMYADGSTTKEIAERLGISVATVATFERRALAKLGARSRAHA 220 Query: 237 IAYAVRNN 244 I+ V+ + Sbjct: 221 ISICVKRH 228 >gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121] gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121] Length = 219 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 159 LTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218 >gi|85858979|ref|YP_461181.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85722070|gb|ABC77013.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 217 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L ++EG ++ +IA L +S TV + +I +K + + I YA+R Sbjct: 152 ELTPRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKYAIREG 211 Query: 245 I 245 + Sbjct: 212 L 212 >gi|302524673|ref|ZP_07277015.1| two component transcriptional regulator [Streptomyces sp. AA4] gi|302433568|gb|EFL05384.1| two component transcriptional regulator [Streptomyces sp. AA4] Length = 202 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L G + EIA L +S TV NY++ + KT + R GA+ A Sbjct: 142 LTARERDVLIAARGGGSVAEIAGSLYLSVGTVRNYLSGAIAKTGARNRMGAVRVA 196 >gi|255015802|ref|ZP_05287928.1| transcriptional regulator [Bacteroides sp. 2_1_7] Length = 203 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195 Query: 246 V 246 V Sbjct: 196 V 196 >gi|291301049|ref|YP_003512327.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570269|gb|ADD43234.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 914 Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ RE E L + E T+ +IA L IS TV N+++S++RK R A A Sbjct: 9 ISKREAEVLAVLGEHLTNAQIAHRLHISVRTVENHVSSLLRKLGAANRQALAAIA 63 >gi|154486926|ref|ZP_02028333.1| hypothetical protein BIFADO_00759 [Bifidobacterium adolescentis L2-32] gi|154084789|gb|EDN83834.1| hypothetical protein BIFADO_00759 [Bifidobacterium adolescentis L2-32] Length = 250 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ +E + LT S G ++ +IA +L +S +T+N YI RK ++ A+A Sbjct: 188 LSLSQQEKQVLTMCSHGYSNADIAQVLDVSPSTINTYITRASRKMGVASKREAVA 242 >gi|150376931|ref|YP_001313527.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031478|gb|ABR63594.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 259 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 18/109 (16%) Query: 131 CSLTFDVARIRIGLML----LFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFE 185 S++ DV IGL L P I+ RL E G A+ A MF Sbjct: 140 SSVSIDVCIEAIGLALAGGIFVPASSILAMGRLLETGNAVAHPLAGMF------------ 187 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 T R+ E + + GK + IA L + +TV +I +IM+K R+ Sbjct: 188 -TARQAEVVEALRRGKANKIIAYELNLRESTVKVHIRNIMKKVKATNRT 235 >gi|305664552|ref|YP_003860839.1| two component transcriptional regulator, LuxR family protein [Maribacter sp. HTCC2170] gi|88708569|gb|EAR00805.1| two component transcriptional regulator, LuxR family protein [Maribacter sp. HTCC2170] Length = 209 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +L+ REVE L ++ GK + ++A+ L ++ TV+ Y A +M+K Sbjct: 148 KLSTREVEVLKLLASGKRNKDVALGLNLNEKTVSTYKARLMKK 190 >gi|126174023|ref|YP_001050172.1| response regulator receiver protein [Shewanella baltica OS155] gi|153000313|ref|YP_001365994.1| response regulator receiver protein [Shewanella baltica OS185] gi|160874947|ref|YP_001554263.1| LuxR family transcriptional regulator [Shewanella baltica OS195] gi|217973656|ref|YP_002358407.1| LuxR family transcriptional regulator [Shewanella baltica OS223] gi|304411428|ref|ZP_07393042.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307305250|ref|ZP_07584998.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|125997228|gb|ABN61303.1| transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151364931|gb|ABS07931.1| response regulator receiver protein [Shewanella baltica OS185] gi|160860469|gb|ABX49003.1| transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|217498791|gb|ACK46984.1| transcriptional regulator, LuxR family [Shewanella baltica OS223] gi|304350283|gb|EFM14687.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306911553|gb|EFN41978.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|315267183|gb|ADT94036.1| transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 211 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G T+ +IA L +S +T+ ++ + RK +R AIA+A Sbjct: 148 LTIREREVLQALLTGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202 >gi|330951813|gb|EGH52073.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] Length = 208 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 179 HWGKDFELTG-REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + F+L RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I Sbjct: 140 HELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELI 199 Query: 238 AYAVRNNIV 246 A RN +V Sbjct: 200 EMAKRNALV 208 >gi|330808384|ref|YP_004352846.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376492|gb|AEA67842.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 208 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+T+ EIA + +S TV+ Y +M+K K+ I A RN +V Sbjct: 151 RELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLKVKSLVDLIEMAKRNALV 208 >gi|323491516|ref|ZP_08096696.1| putative fimbrial protein Z, transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323314241|gb|EGA67325.1| putative fimbrial protein Z, transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 209 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Query: 164 LLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +L+ Y N FKS D+ K +L+ REV L ++ +GK++++++ ILG+S TV+ Y Sbjct: 126 VLSGY--NFFKSSQRDIS-SKTPKLSNREVMVLNYLLQGKSNNDVSNILGLSPKTVSTYK 182 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + I + R IV Sbjct: 183 RRILDKYGVSSVIELIEVSKREAIV 207 >gi|149203772|ref|ZP_01880741.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149142889|gb|EDM30931.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 200 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE L +++GK++ ++A L IS TV + +I RK + +G YA+ + Sbjct: 132 QLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYALEHG 191 Query: 245 IV 246 ++ Sbjct: 192 VL 193 >gi|157962120|ref|YP_001502154.1| two component LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847120|gb|ABV87619.1| two component transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 221 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ + L I+EG ++ EIA+ + +S TV + A IM + +G + +A+R+ + Sbjct: 154 LTSRQRQILQLIAEGYSTREIALRMNVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRSKL 213 Query: 246 V 246 + Sbjct: 214 I 214 >gi|317503562|ref|ZP_07961584.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315665304|gb|EFV04949.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 212 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 ++ IR+GL R I + R+ E+ LLA Q + + +LT E E L Sbjct: 106 NLQEIRVGLDYAIHDRRFICQ-RMAEM-LLAPAQPQL---------EHVKLTPTETEILK 154 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G T+ EIA S +TVN + +I RK T A YA+R ++ Sbjct: 155 DIALGMTTREIAEKRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLI 205 >gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D + +LT REVE LT + EG ++ +IA L +S T+ +Y++ ++ K Sbjct: 137 SAGHGAARDRALARIADLTDREVEVLTCLGEGLSNAKIARRLYLSEATIKSYVSRMLVKL 196 Query: 229 --ATKTRSGAIA 238 + +T++G +A Sbjct: 197 GFSNRTQAGLLA 208 >gi|300776148|ref|ZP_07086007.1| LuxR family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300505281|gb|EFK36420.1| LuxR family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 265 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 T REVE + I++G ++ +I+ +L IS TV + +I+RK+ K S I Sbjct: 205 FTRREVEIINCIAKGYSTGKISDLLNISEETVRTHRKNILRKSDCKNSSELI 256 >gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 199 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E + ++EG ++ IA L ++ TV NYI++I+ K R AI Sbjct: 138 LTEREKEVMKLMAEGMSTKLIAETLFLTNGTVRNYISTILDKLEVDNRIEAI 189 >gi|150009195|ref|YP_001303938.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256841751|ref|ZP_05547257.1| transcriptional regulator [Parabacteroides sp. D13] gi|298377017|ref|ZP_06986971.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19] gi|149937619|gb|ABR44316.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256736645|gb|EEU49973.1| transcriptional regulator [Parabacteroides sp. D13] gi|298266001|gb|EFI07660.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19] Length = 203 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195 Query: 246 V 246 V Sbjct: 196 V 196 >gi|161520802|ref|YP_001584229.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353016|ref|YP_001948643.1| two-component system invasion response regulator [Burkholderia multivorans ATCC 17616] gi|221196454|ref|ZP_03569501.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221203125|ref|ZP_03576144.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2] gi|160344852|gb|ABX17937.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337038|dbj|BAG46107.1| two-component system invasion response regulator [Burkholderia multivorans ATCC 17616] gi|221177059|gb|EEE09487.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2] gi|221183008|gb|EEE15408.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 215 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|114798134|ref|YP_759953.1| DNA-binding response regulator FixJ [Hyphomonas neptunium ATCC 15444] gi|114738308|gb|ABI76433.1| DNA-binding response regulator FixJ [Hyphomonas neptunium ATCC 15444] Length = 205 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E L + +G+T+ EIA+ L IS TV + A++M K S Sbjct: 143 LTAREKEVLHGLVDGQTNKEIAISLDISPRTVEIHRANVMEKMGASNLS 191 >gi|152984530|ref|YP_001346805.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150959688|gb|ABR81713.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 213 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 28/55 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ELT REVE L G EIA+ L S+ T++ +S MRK T +G Y Sbjct: 152 ELTPREVEVLRLYGSGLAIGEIALRLCRSKQTISAQKSSAMRKLGLDTNAGLYLY 206 >gi|330974001|gb|EGH74067.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 208 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|299531248|ref|ZP_07044658.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298720655|gb|EFI61602.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 212 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ G+ +IA L +S TV+ Y A ++ K + + AYA++N + Sbjct: 149 LSEREMQTLLKIASGQRQTDIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|264676607|ref|YP_003276513.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262207119|gb|ACY31217.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 212 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ G+ +IA L +S TV+ Y A ++ K + + AYA++N + Sbjct: 149 LSEREMQTLLKIASGQRQTDIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|291457497|ref|ZP_06596887.1| putative two-component system response regulator [Bifidobacterium breve DSM 20213] gi|291381332|gb|EFE88850.1| putative two-component system response regulator [Bifidobacterium breve DSM 20213] gi|295923855|gb|ADG63083.1| putative two-component system response regulator [Bifidobacterium breve] Length = 230 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + L+G+E + L ++G T+ EIA LGIS TV + + K ++R+ A Sbjct: 161 DTSYAHRGALSGKERDTLRMYADGSTTKEIAERLGISVATVATFERRALAKLGARSRAHA 220 Query: 237 IAYAVRNN 244 I+ V+ + Sbjct: 221 ISICVKRH 228 >gi|170726983|ref|YP_001761009.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812330|gb|ACA86914.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 213 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+ GK++ +IA LGI+ TV ++ ++++K K+R A +AV + I Sbjct: 152 LTQRELQNLKLIASGKSNKDIANTLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKI 211 >gi|29899136|gb|AAP03103.1| putative 2-component system response regulator [Streptomyces griseochromogenes] Length = 222 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE + + I+ G+T+ E+A L IS +TV +++A+I K + R A+A Sbjct: 154 QLSERETQVIRAIARGRTNQEVAAELFISLSTVKSHLATIQNKLQVRNRVEIAAWA 209 >gi|154813|gb|AAA64793.1| regulatory protein [Plasmid Ti] Length = 234 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E L WI+ GKT +EIA + G+ N+V + M++ ++++ A A+R ++ Sbjct: 177 KEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLRERMKRFDVRSKAHLTALAIRRKLI 234 >gi|66045354|ref|YP_235195.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63256061|gb|AAY37157.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] Length = 212 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 155 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 212 >gi|56477414|ref|YP_159003.1| transcriptional regulator NarL [Aromatoleum aromaticum EbN1] gi|56313457|emb|CAI08102.1| Nitrate/nitrite TWO-component response regulator NARL [Aromatoleum aromaticum EbN1] Length = 220 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 GRI++ D L + A Q S D LT +E L I+ G ++ IA L Sbjct: 128 GRIVVSDALTHLMAAALRQEKRPDSV-----TDAGLTEQEQRILERIAAGLSNKLIAREL 182 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 GI+ TV ++ ++RK ++R A +AV N Sbjct: 183 GIAEGTVKVHVKHVLRKLNFRSRVEAAVWAVANQ 216 >gi|331017354|gb|EGH97410.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 95 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L + +G T+ EIA L IS TV ++++S++RK KTR+ +A V Sbjct: 4 LGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRAELMARCV 51 >gi|297160149|gb|ADI09861.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 262 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E LT ++EG D A LG+S T Y+A IMR ++R A AVR ++ Sbjct: 203 EVLTLMAEGYKDDAAARKLGLSVRTYRRYVADIMRDLRVESRFQAGVRAVRAGLM 257 >gi|291482971|dbj|BAI84046.1| hypothetical protein BSNT_00932 [Bacillus subtilis subsp. natto BEST195] Length = 213 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +EV L I++G S IA L +S TV + + SI K +R+ A+ A++ Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207 Query: 245 IV 246 I+ Sbjct: 208 IL 209 >gi|300774649|ref|ZP_07084512.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300506464|gb|EFK37599.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 214 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL RE E + W T EIA + +S T++ Y S+ K K R+G + +A++++ Sbjct: 153 ELRDREKEFIKWACSELTYKEIADKMCLSPKTIDGYRDSVFVKLDIKNRAGLVLFALKHD 212 Query: 245 I 245 + Sbjct: 213 L 213 >gi|196229471|ref|ZP_03128336.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226703|gb|EDY21208.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 225 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 27/55 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E I GKT+ EIA IL + TV+ Y I K + + YA Sbjct: 156 LTDRELEVFQLIGAGKTTREIAEILNLGMTTVDTYRTRIKEKLGLRNGTQLQHYA 210 >gi|170758988|ref|YP_001788912.1| transcriptional regulatory protein DegU (protease production enhancerprotein) [Clostridium botulinum A3 str. Loch Maree] gi|169405977|gb|ACA54388.1| transcriptional regulatory protein DegU [Clostridium botulinum A3 str. Loch Maree] Length = 219 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E +S+GK++ +I IL ++ TV NY+ I+ K R+ Sbjct: 160 LTPREREVAKLVSQGKSNKDICNILFLTEGTVKNYVTRILEKLELNNRT 208 >gi|73537502|ref|YP_297869.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72120839|gb|AAZ63025.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 215 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E + ++G +EIA LG S +T+++ MRK T + I YA N Sbjct: 154 DLTLRELEVVRLYAQGMQLNEIAAKLGRSVSTISSQKTVAMRKLGVNTNTDLIRYAYENG 213 Query: 245 IV 246 ++ Sbjct: 214 LI 215 >gi|307946995|ref|ZP_07662330.1| putative transcriptional regulatory protein SgaR [Roseibium sp. TrichSKD4] gi|307770659|gb|EFO29885.1| putative transcriptional regulatory protein SgaR [Roseibium sp. TrichSKD4] Length = 216 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 34/54 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE L +S+G ++ ++A GIS NTV +++++ K + +R+ A+A+ Sbjct: 149 LTKREKALLEALSKGLSNRQLASEFGISANTVKFHLSNLYEKLSVTSRTQAVAF 202 >gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 220 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE LT + G ++ EIA L IS +T ++ +M K R+ + A N + Sbjct: 155 LTEREVEILTLVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAYENGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG + EIA L + TV +++ ++ K + R A+ +A I Sbjct: 180 LTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGI 239 Query: 246 V 246 V Sbjct: 240 V 240 >gi|301385099|ref|ZP_07233517.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato Max13] gi|302061858|ref|ZP_07253399.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato K40] gi|302132157|ref|ZP_07258147.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016190|gb|EGH96246.1| LuxR response regulator receiver [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 208 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 221 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ ++ EIA L + TV +++ ++ K R A+ YA R+ + Sbjct: 155 LTSREREVLLLLAGACSNAEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|288801178|ref|ZP_06406633.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331789|gb|EFC70272.1| transcriptional regulator, LuxR family domain protein [Prevotella sp. oral taxon 299 str. F0039] Length = 318 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + + + +G ++ EIA L IS NTV + +I RK + +G YA+ NN Sbjct: 251 LSERERDVIVSLVQGMSNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNF 310 Query: 246 V 246 V Sbjct: 311 V 311 >gi|194292413|ref|YP_002008320.1| transcriptional regulator signal receiver n-trem domain,luxr c-term domain [Cupriavidus taiwanensis LMG 19424] gi|193226317|emb|CAQ72266.1| putative transcriptional regulator, signal receiver N-trem domain,LuxR C-term domain [Cupriavidus taiwanensis LMG 19424] Length = 223 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E T RE+E + ++G EIA LG S +TV++ MRK +T + I YA + Sbjct: 162 EPTQRELEVIRLFAQGAQLTEIAAKLGRSVSTVSSQKTVAMRKLGVQTNTALIRYAYESG 221 Query: 245 IV 246 ++ Sbjct: 222 LI 223 >gi|167633195|ref|ZP_02391520.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|167531233|gb|EDR93911.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] Length = 233 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 D RIR + ++ G+ +++D + L + N+ +S + D L T RE+ + Sbjct: 128 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKCLFTERELSII 181 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI+ L IS T+ NYI S++ KT + R+ Y Sbjct: 182 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226 >gi|302554479|ref|ZP_07306821.1| response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472097|gb|EFL35190.1| response regulator [Streptomyces viridochromogenes DSM 40736] Length = 222 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE++ L ++EG + EIA L S TV N + + + + R+ A+A+A+R Sbjct: 162 MTPRELDVLRLVAEGLDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAHALREGY 221 Query: 246 V 246 + Sbjct: 222 I 222 >gi|238061732|ref|ZP_04606441.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883543|gb|EEP72371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 221 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +T RE + L ++ G T+ EIA L IS +TV ++AS+M K + R Sbjct: 157 VTAREEDVLIAVARGLTNVEIADALHISLSTVKTHLASLMGKLGVRNR 204 >gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 236 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I G+++ EIA L I+ TV ++ SI+ K R+ A A+R+ Sbjct: 175 LTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233 >gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 228 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Query: 163 GLLAAYQANMFKSYD----VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTV 217 GL+A + A D +G+ LTGRE E L ++ G ++DEI L +S TV Sbjct: 135 GLIARFLAQGGDGADEQRAAAYGERLNALTGREREVLVLVAGGLSNDEIGERLDVSPLTV 194 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ M K + R+ + A + +V Sbjct: 195 KTHVNRAMAKLGARDRAQLVVTAYESGLV 223 >gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8] gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8] Length = 192 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++EG ++ EIA L +S TV +++ S+ K + R A++ A Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRA 185 >gi|291442180|ref|ZP_06581570.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345075|gb|EFE72031.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ + ++EG + +IA L S T+ + I + + + R+ A+AYA+R Sbjct: 170 LTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGY 229 Query: 246 V 246 + Sbjct: 230 I 230 >gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + +A+ + Sbjct: 168 IDLTPREQSVLNLVAQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227 Query: 244 NIV 246 + Sbjct: 228 GLA 230 >gi|257486234|ref|ZP_05640275.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626569|ref|ZP_06459523.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650161|ref|ZP_06481504.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi str. 2250] gi|330867642|gb|EGH02351.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330888268|gb|EGH20929.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori str. 301020] gi|330989289|gb|EGH87392.1| LuxR response regulator receiver [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010548|gb|EGH90604.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 208 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 201 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 L+ RE + L ++G T +IA L +S TV NY++S + KT +TR Sbjct: 141 LSTREADVLREAADGATVADIARRLFLSEGTVRNYLSSAIGKTGARTR 188 >gi|213970544|ref|ZP_03398671.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. tomato T1] gi|213924715|gb|EEB58283.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. tomato T1] Length = 212 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 155 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 212 >gi|166030393|ref|ZP_02233222.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC 27755] gi|166029751|gb|EDR48508.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC 27755] Length = 208 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 V E T RE+E L ++ G ++ IA L IS +TV N+I ++ KT ++R+ Sbjct: 137 VGMATSHEFTEREMEVLRLMTTGASNAAIAEKLVISESTVKNHIHRMLEKTGCESRT 193 >gi|330942268|gb|EGH44908.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] Length = 208 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|302527842|ref|ZP_07280184.1| predicted protein [Streptomyces sp. AA4] gi|302436737|gb|EFL08553.1| predicted protein [Streptomyces sp. AA4] Length = 340 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT RE + + G ++ +IA LGIS NTV +++ S+ K ++R Sbjct: 282 YRLTARERDVCREVLSGLSTSDIAARLGISANTVQDHLKSVFGKVGVRSRG 332 >gi|223935182|ref|ZP_03627100.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896066|gb|EEF62509.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 267 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 25/44 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 FELT RE+E L I GK + IA +GIS TV + +M K Sbjct: 180 FELTERELETLGHIVAGKPNKVIACDMGISIKTVEKHRQQVMNK 223 >gi|163788538|ref|ZP_02182983.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1] gi|159875775|gb|EDP69834.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1] Length = 207 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE + L +SEG + D IA L IS+NT+ ++ +I K + A+ A + N Sbjct: 146 ELSKREKDVLLQLSEGNSYDSIAENLFISKNTIKFHLKNIYIKLQVNSNIEAVQKANKEN 205 Query: 245 IV 246 ++ Sbjct: 206 LL 207 >gi|160893007|ref|ZP_02073795.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50] gi|156865090|gb|EDO58521.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50] Length = 207 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT +E E + +++G + EIA L +S TV NY+++I+ K + R+ + +N Sbjct: 146 YNLTEKEFELIRLVADGLNNKEIAEQLFLSEGTVRNYLSNILMKLDLRDRTQVACFYYKN 205 >gi|87200639|ref|YP_497896.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87136320|gb|ABD27062.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 207 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT +++ L + EGK + +IA LG+S TV ++ +IMRK + R+ A Sbjct: 144 LTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQA 194 >gi|167565790|ref|ZP_02358706.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 261 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + KD LT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 149 SYRIDSPKDALALTERERQVLFFLARNKTAKDIANILGLSVRTIEQYMENLRCKFSASSK 208 Query: 234 SGAIAYAV 241 + I A Sbjct: 209 NELIDIAA 216 >gi|167463449|ref|ZP_02328538.1| Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Paenibacillus larvae subsp. larvae BRL-230010] Length = 230 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT E + ISEG ++ EIA L +S TV NYI+ I+ K + + R+ Sbjct: 158 YGLTKAEQAIVEKISEGLSNKEIAGTLFLSEETVKNYISGILDKFSLRDRT 208 >gi|153800849|ref|ZP_01955435.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3] gi|124123559|gb|EAY42302.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3] Length = 208 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT REVE + +GK EIA L +S TV+ + A+I+ K I +A++++ Sbjct: 144 ELTKREVEVFDLLVKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203 Query: 245 IV 246 ++ Sbjct: 204 LL 205 >gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++ G ++++I L IS T ++++IMRK R+ A+ A + Sbjct: 155 QLTDREIEVLRLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKLDVSRRAEAVYAASKRG 214 Query: 245 IV 246 ++ Sbjct: 215 LI 216 >gi|120436827|ref|YP_862513.1| LuxR family transcriptional regulator protein [Gramella forsetii KT0803] gi|117578977|emb|CAL67446.1| LuxR family transcriptional regulator protein [Gramella forsetii KT0803] Length = 199 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D EL R+++ + ++ + IA L IS T+ + + RKT T++R+G ++ + + Sbjct: 135 DNELNNRDIKIILMAAKDLPNKAIAAELNISDRTLEYHNTRLFRKTGTQSRTGLVSTSYK 194 Query: 243 NNIV 246 N+++ Sbjct: 195 NHLI 198 >gi|331010111|gb|EGH90167.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 208 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|329944179|ref|ZP_08292438.1| putative nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 170 str. F0386] gi|328530909|gb|EGF57765.1| putative nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 170 str. F0386] Length = 223 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 3/99 (3%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202 +L +G ++ R ++ L+ AYQ+ ++ ++ EL R + T + EG T Sbjct: 124 LLRASRGEPVMSSRPTKM-LVDAYQSEQKRATAEARIQELVNELPPRLQDVYTCLLEGLT 182 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + IA LGIS NTV Y++ ++ + +R+ IA A+ Sbjct: 183 NRRIARKLGISENTVRIYVSEVLHRLGHTSRTELIAAAL 221 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075725|gb|ADJ65124.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + I+ G+++ EIA L ++ +TV ++ +++RK +R YAV + Sbjct: 155 KLTARERATMVCIARGQSNKEIARSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHG 214 Query: 245 I 245 + Sbjct: 215 L 215 >gi|290475675|ref|YP_003468564.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004] gi|289174997|emb|CBJ81800.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004] Length = 219 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 27/36 (75%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 EL+ RE++ +T I++G+ +EI+ +L +S TVN+Y Sbjct: 148 ELSERELQIMTMITQGRKVNEISTLLNLSPKTVNSY 183 >gi|295680795|ref|YP_003609369.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440690|gb|ADG19858.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 210 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+ G++ ++IA +S T++ + +M+K + I YA+R+ + Sbjct: 148 LTDREFQVLQLIASGQSINDIAEACSLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] Length = 238 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 36/56 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+ L + +G TS EIA + IS++TV+ ++ +I++K K + AI+ A+ Sbjct: 178 LTKRELMILMFSVDGMTSHEIAGKIFISKSTVDFHMLNIIKKLNCKNKFQAISKAL 233 >gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 228 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E LT ++ G ++ EIA L +S TV +I ++RK + R+ + A + + Sbjct: 159 VTEREREVLTLVARGLSNTEIAERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|124268100|ref|YP_001022104.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124260875|gb|ABM95869.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 905 Score = 36.2 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE + L + + ++++EIA L +SR+TV ++ +I K KTR AI Sbjct: 843 LTKREHKVLAMLVDYQSNEEIASALCVSRDTVKFHVRNIYSKLGVKTRLEAI 894 >gi|68249325|ref|YP_248437.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 86-028NP] gi|145628395|ref|ZP_01784196.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.1-21] gi|145638479|ref|ZP_01794089.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittII] gi|68057524|gb|AAX87777.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 86-028NP] gi|144980170|gb|EDJ89829.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.1-21] gi|145272808|gb|EDK12715.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittII] gi|309751610|gb|ADO81594.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R2866] gi|309973777|gb|ADO96978.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R2846] Length = 208 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 +G +IL D + + L ++ N S LT RE+ L I+ G ++ +IA Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLDS----------LTDREMGVLRQIATGLSNKQIA 170 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236 L IS TV +I +++RK +R A Sbjct: 171 AQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|298486655|ref|ZP_07004713.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158870|gb|EFH99932.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 212 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 155 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 212 >gi|262384081|ref|ZP_06077217.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|262294979|gb|EEY82911.1| transcriptional regulator [Bacteroides sp. 2_1_33B] Length = 203 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195 Query: 246 V 246 V Sbjct: 196 V 196 >gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 290 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT R+ E L + +GK++ EIA +L ++ TV ++ +I++ R+ A+ A Sbjct: 224 LTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 278 >gi|16272666|ref|NP_438884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae Rd KW20] gi|145630463|ref|ZP_01786243.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|145632075|ref|ZP_01787810.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 3655] gi|145634865|ref|ZP_01790573.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittAA] gi|145637737|ref|ZP_01793389.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittHH] gi|148827914|ref|YP_001292667.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittGG] gi|229844595|ref|ZP_04464734.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 6P18H1] gi|260579818|ref|ZP_05847648.1| nitrate/nitrite response regulator protein [Haemophilus influenzae RdAW] gi|260583177|ref|ZP_05850957.1| nitrate/nitrite response regulator protein narP [Haemophilus influenzae NT127] gi|319775331|ref|YP_004137819.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3047] gi|319897771|ref|YP_004135968.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3031] gi|329122673|ref|ZP_08251251.1| nitrate/nitrite response regulator protein NarL [Haemophilus aegyptius ATCC 11116] gi|1171656|sp|P44845|NARP_HAEIN RecName: Full=Nitrate/nitrite response regulator protein homolog gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus influenzae Rd KW20] gi|144983853|gb|EDJ91295.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|144986982|gb|EDJ93512.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 3655] gi|145268031|gb|EDK08027.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittAA] gi|145269086|gb|EDK09037.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittHH] gi|148719156|gb|ABR00284.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittGG] gi|229812309|gb|EEP47999.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 6P18H1] gi|260093102|gb|EEW77035.1| nitrate/nitrite response regulator protein [Haemophilus influenzae RdAW] gi|260093795|gb|EEW77703.1| nitrate/nitrite response regulator protein narP [Haemophilus influenzae NT127] gi|301169444|emb|CBW29044.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Haemophilus influenzae 10810] gi|317433277|emb|CBY81652.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3031] gi|317449922|emb|CBY86134.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3047] gi|327472547|gb|EGF17977.1| nitrate/nitrite response regulator protein NarL [Haemophilus aegyptius ATCC 11116] Length = 208 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 +G +IL D + + L ++ N S LT RE+ L I+ G ++ +IA Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLDS----------LTDREMGVLRQIATGLSNKQIA 170 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236 L IS TV +I +++RK +R A Sbjct: 171 AQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|289675088|ref|ZP_06495978.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] gi|302185631|ref|ZP_07262304.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 208 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424] gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) [Cupriavidus taiwanensis LMG 19424] Length = 223 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT +E L ++EG+++ EIA LG S TV + + RK R+ + YAV Sbjct: 149 LTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKLRVGGRAELVKYAV 204 >gi|329907901|ref|ZP_08274727.1| transcriptional regulator, LuxR-family [Oxalobacteraceae bacterium IMCC9480] gi|327546883|gb|EGF31801.1| transcriptional regulator, LuxR-family [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + EGKTS IA +G+S TV + A +M+K + T SG + + Sbjct: 126 KLTPREREIAALLVEGKTSKLIARQIGMSPRTVEMHRAKLMKKFSAST-SGELVH 179 >gi|327405789|ref|YP_004346627.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Fluviicola taffensis DSM 16823] gi|327321297|gb|AEA45789.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Fluviicola taffensis DSM 16823] Length = 186 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ ++ RE+E L I++G ++ EIA L +S NT+ + + + K R+ A+ A Sbjct: 120 EELGISKRELEVLELIAQGFSNHEIAERLFVSLNTIKTHSSKLFEKLEVNRRTQAVEVAK 179 Query: 242 RNNIV 246 R I+ Sbjct: 180 RLGII 184 >gi|300691205|ref|YP_003752200.1| two component transcriptional regulator, LuxR family [Ralstonia solanacearum PSI07] gi|299078265|emb|CBJ50913.1| two component transcriptional regulator, LuxR family [Ralstonia solanacearum PSI07] Length = 215 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D L+ RE+E + G+ EIA L +S TV+ Y +M K + + Sbjct: 140 DSQIAAHTRLSDREMEVYRRLVRGEPLTEIAASLCVSAKTVSTYKMRLMAKLQLPSEAAL 199 Query: 237 IAYAVRNNI 245 + YA+RN + Sbjct: 200 VRYAIRNQL 208 >gi|319764745|ref|YP_004128682.1| regulatory protein luxr [Alicycliphilus denitrificans BC] gi|317119306|gb|ADV01795.1| regulatory protein LuxR [Alicycliphilus denitrificans BC] Length = 212 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 33/52 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT ++ L +++G + +IA LG++ NTV ++ +I++K A +R+ A Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAAQLGLAENTVKVHVTAILKKLACYSRTQA 199 >gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 245 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+E L I +G S EIA L IS +TVN + +++RK + AI Sbjct: 184 LTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 235 >gi|218886230|ref|YP_002435551.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757184|gb|ACL08083.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 231 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++EG + EIA +L +S TV + A++ RK + +++ A A+A Sbjct: 158 LTPREREVLHLVAEGYRNREIAGLLVVSDRTVEKHRANLFRKLSLHSQADARAWA 212 >gi|111020362|ref|YP_703334.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819892|gb|ABG95176.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1094 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 36/80 (45%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A Q K +LT RE E ++EG T+ EIA L IS T ++ I+ Sbjct: 1010 ALQKRTSKPAPATPAAKVKLTPREKEVGKLVAEGLTNKEIAERLVISPRTAEGHVDRILT 1069 Query: 227 KTATKTRSGAIAYAVRNNIV 246 KT ++R+ A+ R + Sbjct: 1070 KTGHRSRAQLAAWIAREESI 1089 >gi|320324215|gb|EFW80294.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea str. B076] Length = 190 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 133 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 190 >gi|301310989|ref|ZP_07216918.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3] gi|300831052|gb|EFK61693.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3] Length = 203 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195 Query: 246 V 246 V Sbjct: 196 V 196 >gi|300785664|ref|YP_003765955.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795178|gb|ADJ45553.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 345 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 EL+ RE++ L ++ G + EIA LGIS +T + ++++I K +R Sbjct: 284 ELSERELDVLRLVAHGLSDQEIARRLGISAHTAHRHVSNIRGKLGVSSR 332 >gi|239817406|ref|YP_002946316.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803983|gb|ACS21050.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 224 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I++G ++ +IA + +S NT+ + +I RK + K+R+ A+ A + + Sbjct: 163 LSPRELKVLRLIAQGWSNQQIAEAVSLSVNTIEFHAKNIYRKLSVKSRTQAVHQATQQGL 222 >gi|254468811|ref|ZP_05082217.1| two component transcriptional regulator, LuxR family [beta proteobacterium KB13] gi|207087621|gb|EDZ64904.1| two component transcriptional regulator, LuxR family [beta proteobacterium KB13] Length = 199 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 ++G M K I D L++ N F + + +L RE E I+ G Sbjct: 94 KLGAMGFVTKSDI--SDNLFQAVEHILNGGNFFPETKASYNQLNQLNEREFEIFKMIASG 151 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRK 227 K+ IA + IS+ TV NY SI +K Sbjct: 152 KSIKNIAADMNISQKTVANYQTSIKQK 178 >gi|4883696|gb|AAD31608.1|AF065246_2 conjugal transfer regulatory protein [Agrobacterium tumefaciens] Length = 234 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ G T +EIA + G+ N+V + M++ +++ IA A+R + Sbjct: 174 LDPKEASYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVHSKAHLIALAIRRKL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505] Length = 230 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G ++ EIA L + +TV +++ I+ K + R A+ +A RN + Sbjct: 170 LTEREREVVQLLAGGMSNAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGL 229 Query: 246 V 246 V Sbjct: 230 V 230 >gi|325291416|ref|YP_004267597.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966817|gb|ADY57596.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 208 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 6/94 (6%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 KG I+L + A ++M + + ++ RE L + EG ++ EI Sbjct: 119 KGNIVLEREV------ATALSSMLREGKKTTPEQLAISPREFAILKLVGEGCSNREIGRE 172 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L IS TV NY+ +++ K + R+ + ++N Sbjct: 173 LKISEGTVRNYVTALLEKLGFRDRTQLAIFYIKN 206 >gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597] gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597] Length = 199 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDASNRTDA 189 >gi|298247654|ref|ZP_06971459.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550313|gb|EFH84179.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 907 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L I G+++ IA L +S NTV +++ I K +R+ A+A A Sbjct: 839 LSERELEVLQCIMRGQSNQTIADHLQVSLNTVKTHMSHIFAKLHVNSRTQAVARA 893 >gi|254294922|ref|YP_003060945.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Hirschia baltica ATCC 49814] gi|254043453|gb|ACT60248.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Hirschia baltica ATCC 49814] Length = 905 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+E L +++ G ++ EIA + IS NTV + S+ +K R A+ A + Sbjct: 839 LTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFKKLDVSKRRDAVMIAREKGL 898 Query: 246 V 246 V Sbjct: 899 V 899 >gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 230 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++G ++ EIA L I TV +I +I K + R+ A YA + Sbjct: 168 DLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHITNIFNKLDVEDRTQAAIYAHKQG 227 Query: 245 I 245 I Sbjct: 228 I 228 >gi|190014846|ref|YP_001967610.1| TraR [Agrobacterium tumefaciens] gi|71849649|gb|AAZ50597.1| TraR [Agrobacterium tumefaciens] Length = 234 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ G T +EIA + G+ N+V + M++ +++ IA A+R + Sbjct: 174 LDPKEASYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVHSKAHMIALAIRRKL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|46198976|ref|YP_004643.1| two-component response regulator [Thermus thermophilus HB27] gi|46196600|gb|AAS81016.1| two-component response regulator [Thermus thermophilus HB27] Length = 192 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++EG ++ EIA L +S TV +++ S+ K + R A++ A Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRA 185 >gi|27367857|ref|NP_763384.1| response regulator [Vibrio vulnificus CMCP6] gi|27359430|gb|AAO08374.1|AE016813_126 Response regulator [Vibrio vulnificus CMCP6] Length = 119 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 EL+ RE + ++ +GKT+ EIA IL IS T++ Y ++ K Sbjct: 62 ELSDREAAVMNYLLKGKTNREIAKILSISDKTISTYKRRLLNK 104 >gi|127512655|ref|YP_001093852.1| LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126637950|gb|ABO23593.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 208 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D LT RE E L + G T+ +IA L +S +T+ ++ + RK +R AIA+A Sbjct: 141 GAD-NLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 199 >gi|302543904|ref|ZP_07296246.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461522|gb|EFL24615.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A A+ R Sbjct: 156 LTEQERRILLLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVAR 212 >gi|149921547|ref|ZP_01909998.1| luxR family two component system response regulator [Plesiocystis pacifica SIR-1] gi|149817622|gb|EDM77090.1| luxR family two component system response regulator [Plesiocystis pacifica SIR-1] Length = 236 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +F LT R+ E L +SEG +IA +G+S + V +A+ K K+R+ I + V Sbjct: 172 EFGLTARQTEALERVSEGHRDRQIAEDMGVSYSRVRQLLAAGFGKLGVKSRNDFIRFLV 230 >gi|46201852|ref|ZP_00208275.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 238 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT R+ E L + +GK++ EIA +L ++ TV ++ +I++ R+ A+ A Sbjct: 172 LTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 226 >gi|297622465|ref|YP_003703899.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297163645|gb|ADI13356.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 176 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE E L +++G ++ I LGIS TV ++A++ K +TR Sbjct: 119 QLTEREREVLGLLAQGLSNRAIGERLGISERTVKTHVANLFDKFGVRTR 167 >gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4] Length = 207 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L +++G+T+ EI L I TV ++ + K R+ A+ A+ ++ Sbjct: 146 LSAREVEVLRLVAKGRTNAEIGRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRHL 205 Query: 246 V 246 + Sbjct: 206 L 206 >gi|302529845|ref|ZP_07282187.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4] gi|302438740|gb|EFL10556.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4] Length = 170 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG + E A + S V I + ++ + R+ A+AYA+RN Sbjct: 110 LTQREIDVLRLLAEGLDTAETAEKINFSERAVKKVIHDLSQRLDLRNRTHAVAYALRNGA 169 Query: 246 V 246 + Sbjct: 170 I 170 >gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 151 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE E L +++G ++ EIA L IS +TV +++++ K K+R A+ A R I Sbjct: 90 LNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRIKALEKAKRLKI 149 Query: 246 V 246 + Sbjct: 150 I 150 >gi|256831432|ref|YP_003160159.1| transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256684963|gb|ACV07856.1| transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 85 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K +LT RE L + E T ++IA L ++RNTV + + S+ RK TR+ A+ +A Sbjct: 16 KAKDLTRRERIVLANLREDVTLEQIASKLFVTRNTVKSQVRSVYRKIGVSTRADAVQWA 74 >gi|218289394|ref|ZP_03493628.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240500|gb|EED07681.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 200 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D L+ RE++ L G T+ ++A L +S TV NY++ + K TR AI A Sbjct: 137 DSPLSAREIDVLRLAKRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKA 194 >gi|145640801|ref|ZP_01796383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|148826630|ref|YP_001291383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittEE] gi|229845772|ref|ZP_04465884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 7P49H1] gi|145274315|gb|EDK14179.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.4-21] gi|148716790|gb|ABQ99000.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittEE] gi|229810776|gb|EEP46493.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 7P49H1] Length = 208 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 +G +IL D + + L ++ N S LT RE+ L I+ G ++ +IA Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLDS----------LTDREMGVLRQIATGLSNKQIA 170 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236 L IS TV +I +++RK +R A Sbjct: 171 AQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|15893467|ref|NP_346816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023003|gb|AAK78156.1|AE007530_7 Response regulator, CheY-like receiver domain and HTH DNA-binding domain [Clostridium acetobutylicum ATCC 824] gi|325507583|gb|ADZ19219.1| Response regulator, CheY-like receiver domain protein and HTH DNA-binding domain protein [Clostridium acetobutylicum EA 2018] Length = 213 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE++ + +GK++ IA L ++ T+ NY++ I+ K RS I Y Sbjct: 155 LTPREMDVANHVLKGKSNRAIAEALFLTEGTIKNYVSKILEKLELGNRSELILY 208 >gi|330826718|ref|YP_004390021.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329312090|gb|AEB86505.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 209 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ GK +IA L +S TV+ Y A ++ K + YA+RN + Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLRLANNAELTVYAIRNRL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I G+++ EIA L I+ TV ++ SI+ K R+ A A+R+ Sbjct: 175 LTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233 >gi|239993792|ref|ZP_04714316.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas macleodii ATCC 27126] Length = 222 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A AN D + +LT +++ L +S+G + +IA L IS +TV ++++++R Sbjct: 142 ASNANGHSGQDDFTNRLKQLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLR 201 Query: 227 KTATKTRSGA-IAY 239 K R+ A IA+ Sbjct: 202 KLGVINRTKAGIAF 215 >gi|256380091|ref|YP_003103751.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924394|gb|ACU39905.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ +E L I+EG T+ +IA L ++ TV NY++S++ K R+ A YA + Sbjct: 152 LSPQERRILDLIAEGLTNRQIAGRLFLAEKTVKNYVSSLLHKLGFDRRTEAGVYAAK 208 >gi|212635701|ref|YP_002312226.1| regulatory protein LuxR [Shewanella piezotolerans WP3] gi|212557185|gb|ACJ29639.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3] Length = 211 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L + G T+ +IA L +S +T+ ++ RK +R AIA+A N Sbjct: 148 LTMREREVLQVLRSGSTNIDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQTN 205 >gi|303238259|ref|ZP_07324795.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302594305|gb|EFL64017.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 215 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L REVE + I+EG ++ EIA L +S N I+ I+ K R+ ++A +N Sbjct: 153 IDLKEREVEIIRMIAEGMSNKEIASKLCLSFGRTKNIISEILAKLDLSDRNQLASFAFKN 212 Query: 244 NIV 246 ++ Sbjct: 213 KLI 215 >gi|319764502|ref|YP_004128439.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317119063|gb|ADV01552.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 209 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ GK +IA L +S TV+ Y A ++ K + YA+RN + Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLRLANNAELTVYAIRNRL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 201 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238 LT RE E L EG+++ +IA +L +S TV NY++ +K A + +G IA Sbjct: 141 LTDREREILRLAEEGRSNKDIAEVLELSPGTVRNYLSEAAQKLGAANRVEAGRIA 195 >gi|256786676|ref|ZP_05525107.1| two-component system response transcriptional regulator [Streptomyces lividans TK24] Length = 202 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L I EG T+ I L ++ T+ NY++S++ K + RS A A+ R Sbjct: 140 LTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 196 >gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L + + G +S E+A L IS TV ++ASI K ++ A+ A++ Sbjct: 143 DLSPREREVLLFAARGLSSKEVASHLFISERTVQTHLASIYDKLGAHNKTEAMLLALKYG 202 Query: 245 IV 246 ++ Sbjct: 203 LL 204 >gi|256376957|ref|YP_003100617.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921260|gb|ACU36771.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 492 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF L+ RE++ L+ ++ G + EIA + +S T+ ++ I K TR A A AV Sbjct: 408 DFGLSARELDVLSRVARGLRNREIAREIQLSPATIKFHLVRIFEKLGVGTRGEAAAVAVE 467 Query: 243 NNIV 246 +V Sbjct: 468 FGLV 471 >gi|224368482|ref|YP_002602645.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] gi|223691198|gb|ACN14481.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] Length = 212 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L ++ G T+ EIA IS TV+ Y A +++K + + +A++N I Sbjct: 150 LSMRELQVLRKLALGHTNHEIAASYNISVKTVDTYRARVLKKLNLRNNADLSRFAIKNRI 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|53717385|ref|YP_105375.1| LuxR family DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|67643685|ref|ZP_00442429.1| DNA-binding response regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254174245|ref|ZP_04880907.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254204067|ref|ZP_04910426.1| DNA-binding response regulator, LuxR family [Burkholderia mallei FMH] gi|254209044|ref|ZP_04915391.1| DNA-binding response regulator, LuxR family [Burkholderia mallei JHU] gi|254355678|ref|ZP_04971958.1| DNA-binding response regulator, LuxR family [Burkholderia mallei 2002721280] gi|52423355|gb|AAU46925.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|147744951|gb|EDK52032.1| DNA-binding response regulator, LuxR family [Burkholderia mallei FMH] gi|147750267|gb|EDK57337.1| DNA-binding response regulator, LuxR family [Burkholderia mallei JHU] gi|148023771|gb|EDK82833.1| DNA-binding response regulator, LuxR family [Burkholderia mallei 2002721280] gi|160695291|gb|EDP85261.1| DNA-binding response regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|238525073|gb|EEP88502.1| DNA-binding response regulator, LuxR family [Burkholderia mallei GB8 horse 4] Length = 212 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E ++ G T +IA LGIS TV Y A ++ K + + YAV + I Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208 >gi|330875537|gb|EGH09686.1| LuxR response regulator receiver [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 208 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|324997550|ref|ZP_08118662.1| putative GAF sensor protein [Pseudonocardia sp. P1] Length = 380 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E + ++ G T+ +IA +L ++ TV ++ I+RK R+ A+ +R+ Sbjct: 323 LTPRELEVMELMAAGHTNGKIASLLFVTEATVKAHVKHILRKLPAANRAEAVCRYLRD 380 >gi|323357662|ref|YP_004224058.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] gi|323274033|dbj|BAJ74178.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] Length = 471 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---------DFELT 187 AR R+ L+ + LRD +G + A + + G LT Sbjct: 341 AARARLSPALIIGLAAVDLRDVAEWLGDVTPEAAEFLSRLEQYRGSLPNPPSPSVVPVLT 400 Query: 188 GREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 RE E L W I +G ++ EI+ G+S NTV ++++ RK TR A+A+ Sbjct: 401 SRE-ESLAWSIYDGASNKEISEKDGVSVNTVKVQLSTLYRKLGVSTRKQALAF 452 >gi|313149427|ref|ZP_07811620.1| response regulator receiver protein [Bacteroides fragilis 3_1_12] gi|313138194|gb|EFR55554.1| response regulator receiver protein [Bacteroides fragilis 3_1_12] Length = 251 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE L I GKTS EIA L IS+NTV+ + +I+ K K Sbjct: 190 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 236 >gi|261497168|gb|ACX83628.1| putative two-component response regulator [uncultured soil bacterium V167] Length = 191 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L +EG S EIA L ++ T+ NY+ S + K + R AI A Sbjct: 130 LTQREIDTLRLAAEGAGSSEIADQLHLAVGTIRNYLTSAVLKLHARNRLDAILIA 184 >gi|291614056|ref|YP_003524213.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584168|gb|ADE11826.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 208 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE L + +GK+ +E+A L IS TV+ + A +M+K + + I Y V + + Sbjct: 148 LSEREYTILHLLVQGKSVNEVAAELVISNKTVSTHKARLMQKLNLQNNAELIRYGVEHGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|237713861|ref|ZP_04544342.1| transcriptional regulator [Bacteroides sp. D1] gi|262409230|ref|ZP_06085774.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294645794|ref|ZP_06723478.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294809468|ref|ZP_06768172.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|229446017|gb|EEO51808.1| transcriptional regulator [Bacteroides sp. D1] gi|262352977|gb|EEZ02073.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292638873|gb|EFF57207.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294443340|gb|EFG12103.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] Length = 255 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+E L I +G S EIA L IS +TVN + +++RK + AI Sbjct: 194 LTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 245 >gi|294139532|ref|YP_003555510.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea DSS12] gi|224613098|dbj|BAH24209.1| regulator protein [Shewanella violacea] gi|293326001|dbj|BAJ00732.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea DSS12] Length = 209 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 32/49 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ L +++GK++ ++ L IS TV ++ +++RK K+R+ Sbjct: 152 LTPRELQILQLVAQGKSNRTLSEHLHISEGTVKVHVKNLLRKANAKSRT 200 >gi|188591560|ref|YP_001796159.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus taiwanensis] gi|170938955|emb|CAP63962.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus taiwanensis LMG 19424] Length = 210 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE + L ++ G+T +EIA L +S T++ + +M+K + + I YA+R+ Sbjct: 148 LSDREFQVLQRLATGQTVNEIAESLSLSAKTISTHKMRLMQKLGLQNNAELIRYAIRHG 206 >gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans] gi|133739595|emb|CAL62646.1| Response regulator receiver, LuxR family [Herminiimonas arsenicoxydans] Length = 210 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + +G +IA L +S TV+ Y A +++K + +G I YA++ N+ Sbjct: 149 LSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|94314859|ref|YP_588068.1| LuxR family response regulator [Cupriavidus metallidurans CH34] gi|93358711|gb|ABF12799.1| DNA-binding response regulator, LuxR family (two-component response regulator activity) [Cupriavidus metallidurans CH34] Length = 220 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +EVE L ++ G ++ I L IS TV++Y +M+K A + I +A R Sbjct: 158 KLTDKEVEILRMLTRGMSNKAIGKALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCR 217 Query: 245 IV 246 ++ Sbjct: 218 LI 219 >gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] Length = 213 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE E L +++G ++ EIA L I TV +Y+ SI+ K + R Sbjct: 152 DLTHREEEILRRVAKGLSNKEIAAELSIQEKTVKHYMTSILSKLHARNR 200 >gi|239933771|ref|ZP_04690724.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 188 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ + ++EG + +IA L S T+ + I + + + R+ A+AYA+R Sbjct: 128 LTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGY 187 Query: 246 V 246 + Sbjct: 188 I 188 >gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 217 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G ++ EIA L IS TV ++ + K K R+ A+A A I Sbjct: 156 LSAREREVLALVARGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGI 215 Query: 246 V 246 + Sbjct: 216 L 216 >gi|255034528|ref|YP_003085149.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254947284|gb|ACT91984.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 206 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + + I EG T+ E+AV + IS TV +I +I K +R I+ R Sbjct: 150 LTPREAQIVLAIEEGLTNKEVAVRMDISLETVKYHIKNIYEKLQVNSRHALISRKFR 206 >gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G ++ EIA L + TV ++++ ++ K + R+ A+ A + Sbjct: 157 QLTEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESG 216 Query: 245 IV 246 V Sbjct: 217 FV 218 >gi|167572884|ref|ZP_02365758.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 261 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + KD LT RE + L +++ KT+ +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 149 SYRIDSPKDALALTERERQVLFFLARNKTAKDIANILGLSVRTIEQYMENLRCKFSASSK 208 Query: 234 SGAIAYAV 241 + I A Sbjct: 209 NELIDIAA 216 >gi|320328623|gb|EFW84625.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea str. race 4] gi|330882548|gb|EGH16697.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea str. race 4] Length = 208 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L ++G+++ EIA + +S TV+ Y +M+K T+T I A RN +V Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208 >gi|312195733|ref|YP_004015794.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227069|gb|ADP79924.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 404 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E+T RE+ L +++G T+ IA L IS TV N++ S+ RK R A+ A Sbjct: 242 LEITPREITVLVALADGLTAAGIARRLNISVRTVGNHLTSLYRKLDAPDRLTAVLRA 298 >gi|170782304|ref|YP_001710637.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169156873|emb|CAQ02041.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 222 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE + L + G ++ EIA + +S TV +++AS+MRK A + R +A AVR Sbjct: 161 ITPREGDVLQGVLLGWSNAEIAEEIALSSETVKSHVASLMRKLACRNR---VALAVR 214 >gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] Length = 275 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+E L I +G S EIA L IS +TVN + +++RK + AI Sbjct: 212 LNLTNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 265 >gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 235 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 EL+ RE+E ++ G ++ IA +LG+S TV +++ + M K + R+ Sbjct: 170 ELSPRELEVAAGVARGLKNNAIASLLGLSVETVKSHVGNAMDKLGARDRT 219 >gi|23006356|ref|ZP_00048713.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 180 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REV L ++ G+++ IA L I+ TV ++ +I+RK K R+ A +A+ Sbjct: 85 SLSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKG 144 Query: 245 IV 246 IV Sbjct: 145 IV 146 >gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 219 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L +++G T+ I LG+S TV +++ + +RK R+ + YA+ + Sbjct: 157 LTERETGVLRLVAKGLTARAIGERLGLSHRTVESHVQNTLRKLQLHNRAQLVRYAIEQGL 216 >gi|300728290|ref|ZP_07061658.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] gi|299774525|gb|EFI71149.1| transcriptional regulator, LuxR family domain protein [Prevotella bryantii B14] Length = 322 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE + + + +G T+ EI L IS NTV + +I +K + +G YA+ Sbjct: 252 DEALSEREKDVIVALVQGMTNKEIGDHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIV 311 Query: 243 NNIV 246 NN++ Sbjct: 312 NNLI 315 >gi|290957183|ref|YP_003488365.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260646709|emb|CBG69806.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 974 Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G+T+ +I L I+ T + ++++I+ K +R+ A+A A R + Sbjct: 911 LTARESDVLRLLALGRTNRQIGDELFITGKTASVHVSNILAKLGAASRTEAVAIAYREGL 970 Query: 246 V 246 + Sbjct: 971 I 971 >gi|269793570|ref|YP_003313025.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095755|gb|ACZ20191.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 862 Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE E L + G + EIA L +S+ T N+++ ++RK +R A Sbjct: 800 QLTPREREVLELVVAGLKNGEIAERLTLSKRTAENHVSRLLRKLGVSSREEA 851 >gi|253566600|ref|ZP_04844053.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5] gi|251944772|gb|EES85247.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5] Length = 278 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE L I GKTS EIA L IS+NTV+ + +I+ K K Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263 >gi|228999272|ref|ZP_04158852.1| Spore germination protein gerE [Bacillus mycoides Rock3-17] gi|228760469|gb|EEM09435.1| Spore germination protein gerE [Bacillus mycoides Rock3-17] Length = 52 Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 3 QDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 46 >gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 159 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 218 >gi|53715583|ref|YP_101575.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|52218448|dbj|BAD51041.1| putative transcriptional regulator [Bacteroides fragilis YCH46] Length = 278 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE L I GKTS EIA L IS+NTV+ + +I+ K K Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263 >gi|84385413|ref|ZP_00988445.1| putative tetrathionate reductase complex: response regulator [Vibrio splendidus 12B01] gi|84380010|gb|EAP96861.1| putative tetrathionate reductase complex: response regulator [Vibrio splendidus 12B01] Length = 200 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE++ L I +GK + +IA L I+ TV + AS+M+K + KT Sbjct: 142 LTEREIDILKQIIDGKRNQKIADELCIAMRTVEVHRASLMKKFSAKT 188 >gi|330445311|ref|ZP_08308963.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489502|dbj|GAA03460.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 208 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 34/52 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE++ L +++G+ + +IA L IS TV ++ S+++K K+R+ A Sbjct: 147 QLTERELQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLLKKLQVKSRTAA 198 >gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE++ L I++G ++ EIA L IS TV ++++I+ K R+ A +A Sbjct: 153 QLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVSNILGKLHMVDRTQAAVFA 208 >gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 213 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + EG ++ +I+ L +S+ TV +++ I K +R+ A+A A + Sbjct: 151 LTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|325674370|ref|ZP_08154059.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555050|gb|EGD24723.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 780 Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E ++EG T+ EIA L ISR TV+ ++ I+ K +R Sbjct: 719 LTKREHEVAELVAEGLTNKEIAQRLTISRRTVDGHVDHILTKLGFTSR 766 >gi|291297909|ref|YP_003509187.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567129|gb|ADD40094.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I+ GK++ EI L I+ +TV + + RK + R+ A+A A R I Sbjct: 73 LSERETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRIGI 132 Query: 246 V 246 + Sbjct: 133 L 133 >gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] Length = 205 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L +++G + +IA L IS +TV ++ S+++K +R+ A Sbjct: 142 ELTDREMQILKEVAKGLRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAA 193 >gi|222085009|ref|YP_002543538.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722457|gb|ACM25613.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 213 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L I G+++ EIA LGI+ T + ++ RK T +G I YA+ + I Sbjct: 149 LTPREHHILGLIVTGRSNREIAEELGITPATAETHRKNLKRKLGIATTAGLIRYALDHGI 208 >gi|254387494|ref|ZP_05002733.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064] gi|294815121|ref|ZP_06773764.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443484|ref|ZP_08218218.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701220|gb|EDY47032.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064] gi|294327720|gb|EFG09363.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 230 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L+ + EG ++ EIAV L ++ TV +++ ++ K ++R A A Sbjct: 171 LTRREREVLSAVGEGLSNAEIAVRLSMAEATVKTHVSRLLNKLELRSRVQAAVLA 225 >gi|83592836|ref|YP_426588.1| signal transduction histidine kinase with CheB and CheR activity [Rhodospirillum rubrum ATCC 11170] gi|83575750|gb|ABC22301.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Rhodospirillum rubrum ATCC 11170] Length = 1483 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ R+ E + + G+ S IA LGIS+ TV ++ A IM+K K+ Sbjct: 1417 LSARQREIMEMVLAGQPSKNIAADLGISQRTVESHRALIMKKLGVKS 1463 >gi|60683534|ref|YP_213678.1| transcriptional regulator GerE [Bacteroides fragilis NCTC 9343] gi|60494968|emb|CAH09784.1| putative transcriptional regulator GerE, LuxR family [Bacteroides fragilis NCTC 9343] Length = 278 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE L I GKTS EIA L IS+NTV+ + +I+ K K Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263 >gi|89092860|ref|ZP_01165812.1| DNA-binding response regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082885|gb|EAR62105.1| DNA-binding response regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 211 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E ++ G++S IA L ++ TV+NYI +I K + + + AV Sbjct: 146 ELTQREFEVFVMLARGQSSQIIADTLELNIKTVSNYITTIKSKLQISSTAEIVHLAVEAG 205 Query: 245 IV 246 +V Sbjct: 206 VV 207 >gi|87308851|ref|ZP_01090990.1| putative two-component system response regulator [Blastopirellula marina DSM 3645] gi|87288562|gb|EAQ80457.1| putative two-component system response regulator [Blastopirellula marina DSM 3645] Length = 233 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L ++ GKT EIA L +S TVN + + K A ++ + + ++V + Sbjct: 163 LTHREISVLRELAAGKTQLEIAAALDLSERTVNKEVGDLKEKLALRSLNELLIFSVNEGL 222 >gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 224 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 164 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 223 >gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 220 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L +++GK++ EIA L I TV ++ ++ RK R+ A +A Sbjct: 160 LSRREMEVLERLTQGKSNKEIARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFA 214 >gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] Length = 230 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 170 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 229 Query: 246 V 246 V Sbjct: 230 V 230 >gi|332140807|ref|YP_004426545.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas macleodii str. 'Deep ecotype'] gi|327550829|gb|AEA97547.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas macleodii str. 'Deep ecotype'] Length = 222 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA-IAY 239 +LT +++ L +S+G + +IA L IS +TV ++++++RK R+ A IA+ Sbjct: 160 QLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLRKLGVINRTKAGIAF 215 >gi|265767479|ref|ZP_06095145.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16] gi|263252784|gb|EEZ24296.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16] Length = 278 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE L I GKTS EIA L IS+NTV+ + +I+ K K Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263 >gi|255011592|ref|ZP_05283718.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 278 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE L I GKTS EIA L IS+NTV+ + +I+ K K Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263 >gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 230 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++EG ++ EIA +S TV ++ I+ K + R A+ YA Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1] gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1] Length = 219 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 159 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 218 >gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE L ++ G ++++I L IS T ++++IMRK R+ A+ A + Sbjct: 151 QLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKLEVSRRAEAVYAASKRG 210 Query: 245 IV 246 ++ Sbjct: 211 LI 212 >gi|54024802|ref|YP_119044.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016310|dbj|BAD57680.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 314 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 27/45 (60%) Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ++G + EIA L I +TV ++ +I+R+T + R+ A YA R Sbjct: 263 AQGAANTEIARALRIGASTVATHVEAILRRTGSPNRTAAAVYATR 307 >gi|126445165|ref|YP_001062130.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126224656|gb|ABN88161.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 668] Length = 212 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E ++ G T +IA LGIS TV Y A ++ K + + YAV + I Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208 >gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 916 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E LT + EG ++ EIA L ++ NTV ++ ++ K A R I A+ +V Sbjct: 857 TKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVNNRVKLITTAIHLGLV 916 >gi|332520649|ref|ZP_08397111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] gi|332044002|gb|EGI80197.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] Length = 212 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE ++ I+E T+ EIA L +S++T+ +Y +++ K + +G YA++ V Sbjct: 153 KREVEVISLIAEEFTTQEIADKLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGYV 211 >gi|330959015|gb|EGH59275.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 87 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +E + L W++ GKT+ EI+ I S TV+ + ++I RK + A+ A+R Sbjct: 23 QLTVKERQILEWVAIGKTAWEISRIQECSEATVHFHTSNIRRKFEVHSLRAALVIAIRQG 82 Query: 245 IV 246 ++ Sbjct: 83 VI 84 >gi|330938306|gb|EGH41953.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi str. 1704B] gi|330976814|gb|EGH76848.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 260 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245 >gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 199 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +EV L +++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEVAVLHGVAQGLSNQEIADQLYLSNGTVRNYMTNILSKLGASNRTEAAKTA 193 >gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 224 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAVRN 243 LT RE E L + G +++EI L +SR TV ++++S++ K A + ++ IA +R Sbjct: 155 LTAREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIASGMRR 214 Query: 244 N 244 Sbjct: 215 E 215 >gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 250 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG ++ EIA +S TV ++ I+ K + R A+ YA + Sbjct: 183 LTPREMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRILAKLHLRDRVQAVVYAYETGL 242 Query: 246 V 246 V Sbjct: 243 V 243 >gi|317125093|ref|YP_004099205.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589181|gb|ADU48478.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 238 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 25/43 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 ELT RE E L +++ G EIA L +S TV N++ +I K Sbjct: 172 ELTDRETEILKYVATGMGYKEIAAALFLSHRTVQNHVQNIFGK 214 >gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] Length = 255 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+E L I +G S EIA L IS +TVN + +++RK + AI Sbjct: 194 LTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 245 >gi|290957194|ref|YP_003488376.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260646720|emb|CBG69817.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 1089 Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LTGRE + L ++ G+T+ +IA L IS T + ++++I+ K R A A A R Sbjct: 1018 LTGREHDVLRLVAVGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHR 1074 >gi|259047361|ref|ZP_05737762.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035983|gb|EEW37238.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 202 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE E L ++EG + EIA + +S TV NY+++++ K + R+ Y Sbjct: 144 LSERENELLYLVAEGFNNKEIAEKMYLSEGTVRNYLSALLEKLELRDRTQLAVY 197 >gi|167723020|ref|ZP_02406256.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei DM98] Length = 212 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E ++ G T +IA LGIS TV Y A ++ K + + YAV + I Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208 >gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37] gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37] Length = 218 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I+EG ++ IA L IS TV+N+ +M K + + +AYA+++ + Sbjct: 152 LTMRERQVLYLIAEGCSNAAIAERLSISVKTVDNHRTRLMAKLQVHSVAQLVAYALKSGL 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|330836852|ref|YP_004411493.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] gi|329748755|gb|AEC02111.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] Length = 180 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 36/71 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S+ G+ L+ RE + + + G T EIA LG+ +TV + +I RKT + S Sbjct: 109 SFHSPSGEAICLSARECQVASLTANGMTCKEIAWELGVKESTVAAHRRNIYRKTGLSSSS 168 Query: 235 GAIAYAVRNNI 245 A+ VR+ I Sbjct: 169 QLAAWVVRSEI 179 >gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 199 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A + Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIATESG 197 >gi|257485770|ref|ZP_05639811.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130292|ref|ZP_07256282.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012866|gb|EGH92922.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 257 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LTGRE+E L G ++ EIA L +S TV + + K K++S AY ++ Sbjct: 196 QLTGREIEVLKLALSGFSNSEIAGKLSVSPETVKVHRRNFYSKLNIKSQSELFAYFFQST 255 Query: 245 I 245 I Sbjct: 256 I 256 >gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + EG ++ +I+ L +S+ TV +++ I K +R+ A+A A + Sbjct: 155 LTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 214 Query: 246 V 246 + Sbjct: 215 I 215 >gi|108802949|ref|YP_642886.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764192|gb|ABG03074.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 222 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG ++ EIA L +S +T ++ +I+ K +R A+ A R + Sbjct: 156 LTPREREVLQALAEGLSNREIAERLHMSVDTERTHMVNILSKLGAHSRLQALVLAARAGV 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 199 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A + Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEAANIATESG 197 >gi|284046201|ref|YP_003396541.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950422|gb|ADB53166.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 201 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 10/86 (11%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R + +R+ + GL AA + D LT RE E L T E+A L Sbjct: 117 RAVAGERIVDPGLAAAALST----------GDSPLTPREREVLAAARTEGTVAELASALH 166 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAI 237 +S T N++++IMRK +R AI Sbjct: 167 LSHGTARNHLSAIMRKLGANSRIEAI 192 >gi|256372218|ref|YP_003110042.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256008802|gb|ACU54369.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 223 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 EL+ +E I +GKT+ EIA + ++ TV NY+++I+ K RS A R Sbjct: 150 ELSPQERRIFDLIVDGKTNREIAESVFLAEKTVKNYVSNILSKLGMHHRSEIAALGAR 207 >gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 221 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +AV I Sbjct: 161 LTRREMEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRNALTRWAVNRQI 220 >gi|301165031|emb|CBW24597.1| putative transcriptional regulator GerE, LuxR family [Bacteroides fragilis 638R] Length = 278 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE L I GKTS EIA L IS+NTV+ + +I+ K K Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263 >gi|297243056|ref|ZP_06926994.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] gi|296889267|gb|EFH28001.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244 L +E++ + +++G T+++IA LG+ NT+N +I I +K R AI A+A N Sbjct: 159 LPPQELKIMDLLAKGYTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218 >gi|270313641|gb|ACZ73896.1| FixJ [Azospirillum brasilense] Length = 230 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L W+ EGK++ IA L IS TV + A +M K + + A+ I Sbjct: 166 LTPRERDVLQWLVEGKSNKVIAFELSISPRTVEIHRARVMEKMRADSLPSLVRMALAAGI 225 >gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 226 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L +++G + EIA L S + Y++ + KT T +R+ + +A+ + Sbjct: 163 IDLTPREQSVLDLVAQGLMNKEIARHLNTSVRNIEKYVSRLFSKTGTNSRTELVRFALEH 222 Query: 244 NI 245 + Sbjct: 223 GL 224 >gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 214 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + EIA +L IS TV+ + +M+K + + I +A R Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 203 >gi|149928347|ref|ZP_01916588.1| hypothetical protein LMED105_00475 [Limnobacter sp. MED105] gi|149822932|gb|EDM82177.1| hypothetical protein LMED105_00475 [Limnobacter sp. MED105] Length = 203 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +T R+V L IS+G+++ EIA LG+S TV ++ SI+ + + R Sbjct: 135 ITERQVSVLYRISKGESNHEIAQNLGLSPETVKTHVRSILARLNARNR 182 >gi|126740186|ref|ZP_01755875.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126718641|gb|EBA15354.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 215 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ +E L +++G ++ E++ L IS NTV ++++I K + K R+ AIAY Sbjct: 147 LSRKERAILESLAKGMSNRELSKALQISTNTVKFHLSNIYEKLSVKNRAQAIAY 200 >gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 218 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G+++ EIA L ++ +TV ++ ++++K +R YAV + + Sbjct: 156 LTPREREIVKGLARGESNKEIARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 215 >gi|72160692|ref|YP_288349.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914424|gb|AAZ54326.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 201 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D + LT RE++ L S G + IA L +S TV NY++S + K R Sbjct: 130 AADAMMAGENPLTAREIDVLRAASTGASVAAIARTLHLSEGTVRNYLSSAISKLGEANRI 189 Query: 235 GAI 237 AI Sbjct: 190 AAI 192 >gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 230 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++EG ++ EIA +S TV ++ I+ K + R A+ YA Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 199 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +EV L +++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLGASNRTEAAKTA 193 >gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ G + EIA L IS TV ++ I K +TR+GA+A A + Sbjct: 180 LSERERDILRQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVATERRL 239 Query: 246 V 246 + Sbjct: 240 L 240 >gi|293401509|ref|ZP_06645652.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305147|gb|EFE46393.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 83 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E + ++ EIA +GIS TV N+I+++M K K R+ A+ Sbjct: 21 LTPREKEVFELLIANYSTREIAKRMGISDKTVRNHISNVMLKLGVKGRAQAV 72 >gi|295701248|ref|YP_003610249.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295441571|gb|ADG20738.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 210 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ G++ +EIA +S T++ + +MRK + I YA+R+ + Sbjct: 148 LSDREFQVLQMLAAGRSINEIAETCTLSAKTISTHKMRLMRKLGLSNNAELIRYAIRHGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G + EIA L IS TV ++ + K K R+ A+A A I Sbjct: 163 LSAREREVLALVARGTANREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGI 222 Query: 246 V 246 + Sbjct: 223 L 223 >gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 234 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAVRN 243 LT RE E L + G +++EI L +SR TV ++++S++ K A + ++ IA +R Sbjct: 155 LTAREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIASGMRR 214 Query: 244 N 244 Sbjct: 215 E 215 >gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] Length = 223 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 36/69 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 DV + LT E + + + G ++ EIA L +S TV NY++ I+ K + R+ Sbjct: 148 DVDQKRTENLTKTEWKIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFRDRTQL 207 Query: 237 IAYAVRNNI 245 +AV+N + Sbjct: 208 AIWAVQNKV 216 >gi|149280063|ref|ZP_01886188.1| putative transcriptional regulator GerE, LuxR family protein [Pedobacter sp. BAL39] gi|149229260|gb|EDM34654.1| putative transcriptional regulator GerE, LuxR family protein [Pedobacter sp. BAL39] Length = 254 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 26/42 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 L+ RE E LT I GK S EIA + IS NTVN + +I+ K Sbjct: 194 LSVREKEILTLIRSGKMSIEIADLCSISINTVNRHRQNILEK 235 >gi|78063560|ref|YP_373468.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971445|gb|ABB12824.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 216 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L I EG T +IA +G S NTV + +I RK + I ++ N Sbjct: 152 LSPREIEILRMIGEGLTKQQIAERIGHSANTVEAHRTNIKRKLGLDNNAELIRFSALN 209 >gi|330895602|gb|EGH27910.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 260 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245 >gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 212 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE++ + ++ G+T+DEI L +S TV +I + RK + R+ Sbjct: 151 LTPRELDVVKAVARGETNDEICRSLVVSMPTVKTHIGAAKRKLGVRNRT 199 >gi|139439378|ref|ZP_01772819.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC 25986] gi|133775157|gb|EBA38977.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC 25986] Length = 209 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239 LT RE E I+ G + EIA + TV N+I+SI+ K + R+ AIAY Sbjct: 152 LTDREFEVAELIARGLDNKEIAATAYMGEGTVRNHISSILAKMGLRNRTQIAIAY 206 >gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398189|gb|AAS05819.1| hypothetical protein MAP_3271c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E L +SEG T+ +IA + ++ TV NY++ ++ K + R+ A +A + N Sbjct: 150 LTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKLN 208 >gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 244 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +S+G ++ EIA L +S TV ++ +++ K + R A+ A + Sbjct: 183 LTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 242 Query: 246 V 246 + Sbjct: 243 M 243 >gi|302531276|ref|ZP_07283618.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440171|gb|EFL11987.1| two-component system response regulator [Streptomyces sp. AA4] Length = 229 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ + + G T+ EI L +S +TV ++AS+ K + R A+A R+ + Sbjct: 168 LTARELDVVKAAARGLTNTEIGAELFLSLSTVKTHLASVQGKVGARNRVEIAAWAWRSGV 227 Query: 246 V 246 V Sbjct: 228 V 228 >gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 224 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 164 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 223 >gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 202 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ +E+ L ++G T+ EIA L +S TV NY+++I K R A+ A Sbjct: 138 DNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKN 197 Query: 243 N 243 N Sbjct: 198 N 198 >gi|171911633|ref|ZP_02927103.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 222 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE E EGKT+ EIA L +S TV+ + I K T + I AVR+ Sbjct: 159 KLSDREFEVFRLFGEGKTAKEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIRQAVRH 217 >gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 214 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + EIA +L IS TV+ + +M+K + + I +A R Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 203 >gi|53721797|ref|YP_110782.1| GerE family regulatory protein [Burkholderia pseudomallei K96243] gi|76819120|ref|YP_337498.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b] gi|126457704|ref|YP_001075083.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134279390|ref|ZP_01766103.1| GerE family regulatory protein [Burkholderia pseudomallei 305] gi|167742004|ref|ZP_02414778.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167819187|ref|ZP_02450867.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167827561|ref|ZP_02459032.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167849035|ref|ZP_02474543.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167897634|ref|ZP_02485036.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167905997|ref|ZP_02493202.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167914299|ref|ZP_02501390.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922205|ref|ZP_02509296.1| DNA-binding response regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217418343|ref|ZP_03449850.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|226195056|ref|ZP_03790647.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507638|ref|ZP_04520353.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313653|ref|ZP_04812670.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254183194|ref|ZP_04889786.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254189816|ref|ZP_04896325.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254192904|ref|ZP_04899339.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254262376|ref|ZP_04953241.1| GerE family regulatory protein [Burkholderia pseudomallei 1710a] gi|254300090|ref|ZP_04967536.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|52212211|emb|CAH38231.1| GerE family regulatory protein [Burkholderia pseudomallei K96243] gi|76583593|gb|ABA53067.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b] gi|126231472|gb|ABN94885.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134249809|gb|EBA49890.1| GerE family regulatory protein [Burkholderia pseudomallei 305] gi|157810211|gb|EDO87381.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937493|gb|EDO93163.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169649658|gb|EDS82351.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|184213727|gb|EDU10770.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217397647|gb|EEC37662.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|225932861|gb|EEH28857.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|234999843|gb|EEP49267.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242136892|gb|EES23295.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254213378|gb|EET02763.1| GerE family regulatory protein [Burkholderia pseudomallei 1710a] Length = 212 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E ++ G T +IA LGIS TV Y A ++ K + + YAV + I Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208 >gi|118466851|ref|YP_883258.1| DevR family transcriptional regulator [Mycobacterium avium 104] gi|254776535|ref|ZP_05218051.1| two component transcriptional regulatory protein devr [Mycobacterium avium subsp. avium ATCC 25291] gi|118168138|gb|ABK69035.1| two component transcriptional regulatory protein devr [Mycobacterium avium 104] Length = 222 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E L +SEG T+ +IA + ++ TV NY++ ++ K + R+ A +A + N Sbjct: 150 LTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKLN 208 >gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 904 Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+ L ++EG ++ IA L +S +TV ++ +I K +R+ A+A A R + Sbjct: 843 LTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKICAHSRTQAVAIARRLGV 902 Query: 246 V 246 + Sbjct: 903 I 903 >gi|296784937|dbj|BAJ08165.1| putative LuxR-family transcriptional regulator [Streptomyces murayamaensis] Length = 381 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 K +ELT RE+E +I+ G + E+A L +S +TV +++ +I K +R +A Sbjct: 305 KAYELTDRELEITQYIARGLGTAEMAGKLFLSPHTVRDHVKAIFEKVRVSSRGELVA 361 >gi|291007044|ref|ZP_06565017.1| hypothetical protein SeryN2_21195 [Saccharopolyspora erythraea NRRL 2338] Length = 1190 Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ E+ ++EG+++ EIA +L + R + +ASI+ K +RS AI VR + Sbjct: 1128 LSPEEIRIAALVAEGRSNPEIAALLALPRRVIQGRVASILGKLNAHSRS-AIVGEVRERL 1186 >gi|271964325|ref|YP_003338521.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507500|gb|ACZ85778.1| transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 418 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE++ I+EG ++ IAV L I++ TV+ ++ +I+ K +R+ A+ N+ Sbjct: 355 LSARELQVAELITEGLSNPMIAVRLDIAKRTVDAHVRNILAKGGLASRTQVAAWVAEND 413 >gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G EL+ RE + L ++ G + EIA LG+S T +++ IM K + R+ + Sbjct: 152 LGGPSELSERERQVLALVARGLNNAEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIV 211 Query: 240 AVRNNIV 246 A + +V Sbjct: 212 AYESGLV 218 >gi|134101944|ref|YP_001107605.1| hypothetical protein SACE_5446 [Saccharopolyspora erythraea NRRL 2338] gi|133914567|emb|CAM04680.1| hypothetical protein SACE_5446 [Saccharopolyspora erythraea NRRL 2338] Length = 1184 Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ E+ ++EG+++ EIA +L + R + +ASI+ K +RS AI VR + Sbjct: 1122 LSPEEIRIAALVAEGRSNPEIAALLALPRRVIQGRVASILGKLNAHSRS-AIVGEVRERL 1180 >gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 896 Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+ RE + +S+G T+ +I+ LGIS NTV ++ ++ +K R A+ Sbjct: 836 WHLSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLGVINRQQAV 889 >gi|86750181|ref|YP_486677.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573209|gb|ABD07766.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 217 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L ++ + L + +G T+ EIA LGIS T ++++I+ K R+ A AVR Sbjct: 149 EITLGSQQKKVLALLVKGFTNSEIAERLGISLPTARYHVSAILVKLGASNRAEAAGLAVR 208 Query: 243 NNIV 246 NIV Sbjct: 209 LNIV 212 >gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 215 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA A + + G LT +E L + EG T+ +IA + ++ TV NY++ ++ Sbjct: 131 AALMAKLRAEAEADTGPLAALTEQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLL 190 Query: 226 RKTATKTRSGAIAYAVR 242 K + R+ A A + Sbjct: 191 TKLGVERRTQAAVLAAK 207 >gi|289675728|ref|ZP_06496618.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] Length = 260 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245 >gi|260774008|ref|ZP_05882923.1| two component transcriptional regulator LuxR family [Vibrio metschnikovii CIP 69.14] gi|260610969|gb|EEX36173.1| two component transcriptional regulator LuxR family [Vibrio metschnikovii CIP 69.14] Length = 202 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ ++ G +++EIA + IS TV+ Y IM K K I+ A RNN+ Sbjct: 143 LSAREIVVFNYLVSGLSNNEIAEKMLISNKTVSTYKKRIMDKLNAKNIVDLISIAKRNNV 202 >gi|240171514|ref|ZP_04750173.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L +SEG T+ +IA + ++ TV NY++ ++ K + R+ A +A R Sbjct: 150 LTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASR 206 >gi|269125868|ref|YP_003299238.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310826|gb|ACY97200.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++G +IA +G+S TV NY+++ + K R A+ A Sbjct: 141 LTPRELDALRAAADGSPISKIARSMGLSEGTVRNYLSAAVTKLGADNRHAAVRAA 195 >gi|218258047|ref|ZP_03474480.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii DSM 18315] gi|218225811|gb|EEC98461.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii DSM 18315] Length = 202 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 135 LSSREKEIVVCVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASGLTVYAIVNKL 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|223934694|ref|ZP_03626614.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896649|gb|EEF63090.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 229 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 29/57 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E I EG ++ EIA + +S TV + +I K KT + I Y VR Sbjct: 163 LTDREFEVFRLIGEGLSTKEIAANMHVSAKTVEVHRMNIKTKLGLKTAAELIRYTVR 219 >gi|188584049|ref|YP_001927494.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347547|gb|ACB82959.1| two component transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 263 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REV L ++ G+++ IA L I+ TV ++ +I+RK K R+ A +A+ I Sbjct: 163 LSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGI 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134] gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134] Length = 595 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + A+ A+ Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEI 591 Query: 244 NIV 246 I+ Sbjct: 592 GII 594 >gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a] gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a] Length = 232 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L ++ G ++ EIA L +S TV ++ I+ K + R A+ +A + Sbjct: 159 LTDRELVVLGEVAAGHSNAEIAAHLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETGL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|56476749|ref|YP_158338.1| two-component response regulator [Aromatoleum aromaticum EbN1] gi|56312792|emb|CAI07437.1| Two-component response regulator [Aromatoleum aromaticum EbN1] Length = 206 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G L+ RE++ L + GKT EI+V L +S TV+ + +MRK + I Y Sbjct: 142 GPQEPLSEREIQVLRMLQLGKTVTEISVELSLSPKTVSTHKVHLMRKLGIANNADLIRY 200 >gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 209 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G ++ EIA L IS TV ++ K R+ A+ A+ I Sbjct: 145 LSVRELEVLALVAKGFSNKEIARELKISEATVKTHLLHTFEKLGVDDRTAAVTVAIERGI 204 Query: 246 V 246 + Sbjct: 205 L 205 >gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 214 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + EIA +L IS TV+ + +M+K + + I +A R Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 203 >gi|312960767|ref|ZP_07775272.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284425|gb|EFQ63001.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 206 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A +F+ DV GK LT R+ E I++GKT+ EIA L IS TV +++S++R Sbjct: 134 APLFEGNDV-MGK---LTSRQREVWRLIAQGKTNKEIAAELEISPYTVRIHVSSLIRVLN 189 Query: 230 TKTRSGAIA 238 R+ A A Sbjct: 190 VPNRAVAAA 198 >gi|266631096|emb|CBH32096.1| putative two-component response regulator [Streptomyces albaduncus] Length = 201 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G+ IA L +S TV NY+ ++ K +TR A+ A Sbjct: 141 LTDRELEVLRLTATGEAVPAIATRLHLSPGTVRNYLTTVESKLNARTRVDAVRIA 195 >gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] Length = 230 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +L+A+Q D D EL + RE E + I+ G T E+A L IS TV + Sbjct: 145 VLSAFQGAPAAGADNDVNADEELDRLSSREQEVMRLIARGYTYREVAAELFISVKTVETH 204 Query: 221 IASIMRKTATKTRS 234 +++++RK RS Sbjct: 205 MSAVLRKLQLSNRS 218 >gi|254445229|ref|ZP_05058705.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259537|gb|EDY83845.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 225 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE + L ++E ++ EIA L IS TV+N+ +IMRK + YA++ Sbjct: 159 EIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNIMRKLNLHDVAALTRYAIK 218 Query: 243 NNIV 246 + ++ Sbjct: 219 HELI 222 >gi|329901490|ref|ZP_08272828.1| two component transcriptional regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gi|327549098|gb|EGF33698.1| two component transcriptional regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 210 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E +S+G+ +IA L +S TV+ Y A +++K + + I YA++ N+ Sbjct: 149 LSAREYEIFYKLSQGEGVTKIADELCLSVKTVSTYRARVLQKMNMTSNADIIYYAIKQNL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 181 GKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G+D + LT RE E L +++G + +IA LG+S TV N++ + + K R Sbjct: 154 GRDTDAPRLTDRETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELT 213 Query: 238 AYAVRNNI 245 YA+ + Sbjct: 214 RYAIERGL 221 >gi|66047603|ref|YP_237444.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63258310|gb|AAY39406.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] Length = 265 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 194 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 250 >gi|52143628|ref|YP_083200.1| response regulator [Bacillus cereus E33L] gi|51977097|gb|AAU18647.1| response regulator [Bacillus cereus E33L] Length = 212 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L + N+ S + D L T RE+ + I++G ++ EI+ L IS T+ NYI Sbjct: 129 VLDKIKCNLMGSKEDECKIDTSLFTERELSIIALIAKGFSNKEISKQLFISEGTIANYIT 188 Query: 223 SIMRKTATKTRSGAIAY 239 S++ KT + R+ Y Sbjct: 189 SVLGKTGLEHRTQIAIY 205 >gi|116620874|ref|YP_823030.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224036|gb|ABJ82745.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 247 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + +++G + E+A + IS TV N++ +I K R YA+ NN+ Sbjct: 184 LSQREREIVALVAQGFKNKEMAEKMFISEQTVKNHLHNIFDKLGVSDRLELALYAIHNNL 243 >gi|330974043|gb|EGH74109.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 257 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LTGRE+E L G ++ EIA L +S TV + + K K++S AY ++ Sbjct: 196 QLTGREIEVLKLALSGFSNSEIAGKLSVSPETVKVHRRNFYAKLNIKSQSELFAYFFQST 255 Query: 245 I 245 I Sbjct: 256 I 256 >gi|329924693|ref|ZP_08279708.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|328940527|gb|EGG36849.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 220 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 T RE++ + I++G + EI+ L IS T+ N+I S++ KT + R+ Sbjct: 159 FTERELDIMALIAKGLANKEISKKLFISEGTIANHITSVLSKTGLEHRT 207 >gi|54025695|ref|YP_119937.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017203|dbj|BAD58573.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 231 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + G ++ EIA L ++ TV +++SI+R T + R A AV + Sbjct: 160 LTPREQEILRLVGRGWSNAEIAAELHLAPGTVKVHVSSILRTTGARNRVEAALVAVHAD 218 >gi|302185174|ref|ZP_07261847.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 260 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245 >gi|268679430|ref|YP_003303861.1| regulatory protein LuxR [Sulfurospirillum deleyianum DSM 6946] gi|268617461|gb|ACZ11826.1| regulatory protein LuxR [Sulfurospirillum deleyianum DSM 6946] Length = 202 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 KS V+ +L+ +E E + I EG ++ EIA+ GI+ TV ++ SI KT K R Sbjct: 136 KSLHVNQNLLEKLSCKEKEIASLIKEGLSNKEIALREGITERTVKAHLTSIYEKTGLKDR 195 >gi|308235093|ref|ZP_07665830.1| transcriptional regulator, LuxR family protein [Gardnerella vaginalis ATCC 14018] gi|311115228|ref|YP_003986449.1| hypothetical protein HMPREF0421_21344 [Gardnerella vaginalis ATCC 14019] gi|310946722|gb|ADP39426.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 246 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244 L +E++ + +++G T+++IA LG+ NT+N +I I +K R AI A+A N Sbjct: 159 LPPQELKIMDLLAKGYTTNQIASQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218 >gi|145588917|ref|YP_001155514.1| response regulator receiver protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047323|gb|ABP33950.1| two component transcriptional regulator, LuxR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 215 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +LTGRE + L I G+ + +IA LGIS TV + A+IM K T Sbjct: 153 KLTGRERQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNT 200 >gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300] gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300] Length = 199 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|294677045|ref|YP_003577660.1| LuxR family two component transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475865|gb|ADE85253.1| two component transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 206 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I G+T+ EIA + + TV ++ ++ RK + R+ A A N Sbjct: 146 LTARETEVLRGICAGRTNKEIAREMDLQEVTVKLHVRTLTRKIGARNRTHAAMIARENG 204 >gi|188993657|ref|YP_001905667.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167735417|emb|CAP53632.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 274 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT ++ L + G+ + +IA LG+S T+ ++ +I+RK R+ A+ A Sbjct: 201 DLTPQQFRVLQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 256 >gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] Length = 212 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++G + +IA L IS TV ++ I K R+ A+A A+R Sbjct: 151 LSPREIEILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVSDRASAVAQAIRRG 209 >gi|159900854|ref|YP_001547101.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893893|gb|ABX06973.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 343 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT R+ E L + +G + IA +G+S TV N++ + R+ ++R A+ YA ++ Sbjct: 150 LTPRQRELLWCLQQGDDNHAIARRIGLSVKTVENHLTRLYRQIGVQSRLEAVHYAAQH 207 >gi|292490863|ref|YP_003526302.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291579458|gb|ADE13915.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 213 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + + I +GK + +A+ LGIS TV + A +M K K + I A Sbjct: 145 QLTSRERQVMELIVKGKPNKVVAIELGISTKTVEIHRARVMEKLEAKNLADLIHLA 200 >gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L I+ G + E+A L IS TV ++ + K R+ A+ A+ ++ Sbjct: 152 RELEVLRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209 >gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3] Length = 925 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++ + +I L IS +TV +++ + +K R AIA A R Sbjct: 857 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRTG 916 Query: 245 IV 246 ++ Sbjct: 917 LL 918 >gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 216 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 31/65 (47%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +L+ RE E + I+ G ++ EIA L +S TV Y M K +TR + Y Sbjct: 147 GGTGADLSERETEVVRLIALGYSNKEIAGRLKLSVKTVETYKTRSMEKLGVRTRVDIVQY 206 Query: 240 AVRNN 244 A R Sbjct: 207 AARRG 211 >gi|154684718|ref|YP_001419879.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350569|gb|ABS72648.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 214 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE++ I EGK++ IA L ++ TV NY++ I+ K R+ Y Sbjct: 156 LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281541|gb|ABR89951.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 210 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + +G +IA L +S TV+ Y A +++K + +G I YA++ N+ Sbjct: 149 LSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|111222013|ref|YP_712807.1| putative two-compnent system regulatory protein [Frankia alni ACN14a] gi|111149545|emb|CAJ61238.1| putative Two-compnent system regulatory protein ( two-component system response regulator) [Frankia alni ACN14a] Length = 240 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E + ++E T+ +IA LGI+ +TV ++++I+ K +R A+ A Sbjct: 157 LSKREMEVIEIVAEAATNMQIARRLGITEDTVKRHVSNILMKLGAVSRLDAVKKA 211 >gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 223 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + EIA +L IS TV+ + +M+K + + I +A R Sbjct: 155 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 212 >gi|46581079|ref|YP_011887.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450500|gb|AAS97147.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris str. Hildenborough] Length = 227 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++EG + EIA +L +S TV + A+ M K + + A+A R + Sbjct: 156 LTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 215 >gi|17549201|ref|NP_522541.1| nitrate/nitrite response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431453|emb|CAD18131.1| probable nitrate/nitrite response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 222 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++ G+++ EIA L ++ +TV ++ +I++K +R YAV + + Sbjct: 160 LTPREREIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVEHGL 219 >gi|13475730|ref|NP_107297.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14026486|dbj|BAB53083.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 162 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE++ IS+GK EIA LGIS TV +I I K RS AIA V Sbjct: 96 LTRRELQIALLISDGKVDKEIARQLGISGYTVREHIRRIFAKLNIGRRS-AIASCV 150 >gi|317489643|ref|ZP_07948147.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316911237|gb|EFV32842.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 509 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 FELT RE E L +++ G+++ IA L IS NTV +I + KT ++ Sbjct: 443 FELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSK 492 >gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 199 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|300786429|ref|YP_003766720.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795943|gb|ADJ46318.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 202 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L G T EIA L +S TV NY+++ + KT + R A+ A Sbjct: 142 LTARERDVLITARSGATIAEIASRLYLSEGTVRNYVSAAIAKTGARNRVEAVRMA 196 >gi|288916240|ref|ZP_06410620.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288352431|gb|EFC86628.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 189 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + LT ++ G ++ EIA L ++ +T+ ++ +++ KT+++ R+ + +A + + Sbjct: 128 LTDRERDVLTRVARGMSNAEIAADLVLATSTIKTHMTNLLAKTSSRDRTQLVIFAYESGL 187 Query: 246 V 246 Sbjct: 188 T 188 >gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G ++ EIA L + TV +++++++ K + R+ A+ A + Sbjct: 156 QLTEREAEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 245 IV 246 V Sbjct: 216 FV 217 >gi|228970024|ref|ZP_04130734.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228789688|gb|EEM37560.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto str. T04001] Length = 86 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + + A+ A+ Sbjct: 23 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 82 Query: 244 NIV 246 I+ Sbjct: 83 GII 85 >gi|218778430|ref|YP_002429748.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218759814|gb|ACL02280.1| two component transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 557 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++L+ RE + + I+EGKT EIA L +S T+ Y + K +T + + Y V Sbjct: 495 YKLSDRERQVMFMIAEGKTMKEIASELRLSYKTIATYRTRVFEKMHMRTDAQIVRYVVSK 554 Query: 244 NIV 246 ++ Sbjct: 555 GLL 557 >gi|284993288|ref|YP_003411843.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066534|gb|ADB77472.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 222 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +LT RE E LT ++ G +++ I L IS T ++ ++MRK A R+ A+ Sbjct: 161 DLTAREREVLTLLARGLSNEAIGRELYISATTAKFHVGNVMRKMAVSRRAEAV 213 >gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51] gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE L+ ++ G ++ EIA L +S TV +Y + I K KTR + YA++ Sbjct: 170 DLTVREQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTRHELVRYALKKG 229 Query: 245 IV 246 ++ Sbjct: 230 LM 231 >gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 226 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++EG ++ EIA L +S TV ++ ++ K + R A+ A Sbjct: 160 LTPRELDVLRLVAEGASNVEIAAELVVSEATVKTHVGNVFAKLGARDRVQAVIIA 214 >gi|332666745|ref|YP_004449533.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335559|gb|AEE52660.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 217 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + + G + EIA L +S +TV + +IM+K + S + YAV + Sbjct: 153 LSSREIEIVQLSARGLIAKEIADTLNLSTHTVYTHRKNIMKKLQINSSSELVLYAVSKGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|300023398|ref|YP_003756009.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525219|gb|ADJ23688.1| transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 241 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A +SY+ H D L+ R+ E L ++ GK++ EI+ L S NTV ++ ++++K Sbjct: 159 AEPQRSYEAHPDID-SLSPRQREVLLLVAVGKSNLEISEELSCSLNTVKRHVTAVLQKLH 217 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A A + N++ Sbjct: 218 LPNRTRAANLANQLNLL 234 >gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185] gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185] Length = 581 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + A+ A+ Sbjct: 518 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEI 577 Query: 244 NIV 246 I+ Sbjct: 578 GII 580 >gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 209 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ +E+ L ++G T+ EIA L +S TV NY+++I K R A+ A Sbjct: 146 DNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKN 205 Query: 243 N 243 N Sbjct: 206 N 206 >gi|222083272|ref|YP_002542675.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738652|gb|ACM39490.1| transcriptional regulator [Agrobacterium vitis S4] Length = 234 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ G T +EIA + GI N+V + M++ ++++ A A+R + Sbjct: 174 LDPKEATYLRWIAVGMTMEEIADVEGIKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|331698643|ref|YP_004334882.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953332|gb|AEA27029.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 225 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT +E++ L ++ G ++ EI L IS NT ++ +++RK K R G +A+ Sbjct: 147 LTDKEIDVLALVAAGLSNQEIGETLLISENTAKFHVGNVIRKFGAK-RRGELAH 199 >gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 245 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +S+G ++ EIA L +S TV ++ +++ K + R A+ A + Sbjct: 184 LTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDVRDRVQAVVVAYETGL 243 Query: 246 V 246 + Sbjct: 244 M 244 >gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ +E+ L ++G T+ EIA L +S TV NY+++I K R A+ A Sbjct: 146 DNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKN 205 Query: 243 N 243 N Sbjct: 206 N 206 >gi|261409922|ref|YP_003246163.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286385|gb|ACX68356.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 217 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 T RE++ + I++G + EI+ L IS T+ N+I S++ KT + R+ Sbjct: 156 FTERELDIMALIAKGLANKEISKKLFISEGTIANHITSVLSKTGLEHRT 204 >gi|302521740|ref|ZP_07274082.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318058407|ref|ZP_07977130.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|302430635|gb|EFL02451.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 206 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G + E+A L +S+ TV NY+++ ++K A + R+ A+ A Sbjct: 146 LTTREAEVLRAAAGGAGNAELATALHLSQGTVRNYLSTAIQKLAARNRADAVRIA 200 >gi|160934711|ref|ZP_02082097.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753] gi|156866164|gb|EDO59536.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753] Length = 212 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 183 DFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 DF G RE++ ++ +++G ++ EIA L +S TV NY+++++ K + R+ Sbjct: 144 DFAARGVSPRELDVISLVAKGLSNKEIAEALFLSEGTVRNYLSAVLDKLELRDRT 198 >gi|297189985|ref|ZP_06907383.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718642|gb|EDY62550.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 380 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E + ++ G T+ IA L ++ +T ++A I+RK + R+ A+ +R Sbjct: 319 LSRREIEVMELLAGGATNRVIAARLVVAESTAKAHVAQILRKLEARNRAEAVTKYLR 375 >gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 212 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 15/68 (22%), Positives = 39/68 (57%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + + ELT E++ + +++G + EIA L +S+ T+ +++++++ KT+ R+ Sbjct: 144 IQVPSNVELTPTELKVIQLVAQGMANREIAEKLNVSQRTIESHVSNMLNKTSLHNRTELA 203 Query: 238 AYAVRNNI 245 +A+ + Sbjct: 204 RWAIETKM 211 >gi|171912243|ref|ZP_02927713.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 224 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E W+S G + IA LG+ T+ + A+IM + T + +AV Sbjct: 160 LTDREMEVFQWLSRGYGTKRIAERLGLGIKTIETHRANIMARLDLHTAEELVNFAV 215 >gi|120613018|ref|YP_972696.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|326319058|ref|YP_004236730.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120591482|gb|ABM34922.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|323375894|gb|ADX48163.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 209 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I+ GK +IA L +S TV+ Y + ++ K + YA+RN + Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRSRVLEKLKLSNNAELTVYAIRNQL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|84619202|emb|CAJ42326.1| transcriptional regulator [Streptomyces steffisburgensis] Length = 196 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE++ L + G +IA L + TV NY+ +I+ K + R A+ A Sbjct: 136 LTGRELDVLRLFASGLGPGDIARFLSLQVGTVRNYLTTIVSKLGARNRVDALRIA 190 >gi|229588696|ref|YP_002870815.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360562|emb|CAY47419.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 210 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ G+T+ EIA + +S TV+ Y ++ K ++ I A RN + Sbjct: 150 LSGREMMVLQQLARGRTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|183983463|ref|YP_001851754.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183176789|gb|ACC41899.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 217 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L +SEG T+ +IA + ++ TV NY++ ++ K + R+ A +A R Sbjct: 150 LTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASR 206 >gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++A + + + D H D +LT RE E ++ +++G +++EI L +S T +++ Sbjct: 143 VIAEFTSRSPRPLDPHPHID-QLTNREHEVVSLVAQGLSNEEIGKRLYVSPATARTHVSH 201 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 M K + + R+ + +A ++ + Sbjct: 202 AMLKLSARDRAQLVVFAFQSGL 223 >gi|157850153|gb|ABV89902.1| acyl-homoserine lactone receptor [Burkholderia vietnamiensis] Length = 141 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 20/31 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNT 216 LT RE E L W +EGKT+ EI IL IS T Sbjct: 111 LTAREREVLCWTAEGKTACEIGQILSISERT 141 >gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 226 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Query: 167 AYQANMFKSYDVHWGK--------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 A Q ++ V GK +LT RE L + +G + EIA L S + Sbjct: 138 AQQIAELRAMLVQQGKRHPTAPPIQLDLTPREASVLQLVVKGLMNKEIASQLNTSVRNIE 197 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245 Y++ + KT T +R+ + +A+ + + Sbjct: 198 KYVSRLFVKTGTSSRTELVRFALEHGL 224 >gi|325830056|ref|ZP_08163513.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|325487523|gb|EGC89961.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 486 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 FELT RE E L +++ G+++ IA L IS NTV +I + KT ++ Sbjct: 420 FELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSK 469 >gi|297202549|ref|ZP_06919946.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148137|gb|EFH28852.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 910 Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LTGRE + L ++ G+T+ +IA L IS T + ++++I+ K R A A A Sbjct: 835 RSLGLTGRERDVLRLVTLGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAH 894 Query: 242 R 242 R Sbjct: 895 R 895 >gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L ++ G T+ IA L +S TV N+++++ K R+ A+A A Sbjct: 149 ELTDREREILDLVARGLTNPAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAVARA 204 >gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143] gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143] Length = 199 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|300781785|ref|ZP_07091639.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533492|gb|EFK54553.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 199 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT REVE G +IA L +S TV N+I++IM KT R A Sbjct: 139 LTAREVEVAREALTGAEIKQIAARLNLSTGTVRNHISAIMTKTGAPNRYAA 189 >gi|255039459|ref|YP_003090080.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254952215|gb|ACT96915.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 212 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE + L + G T EIA L +S +TV Y S+M K + + I YA+++ Sbjct: 145 LHLSPREKQVLRKVCSGHTIKEIAYELKLSTHTVQYYHRSVMDKLKVRRTTDLIVYAMQH 204 Query: 244 NI 245 + Sbjct: 205 GL 206 >gi|256379380|ref|YP_003103040.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923683|gb|ACU39194.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 ELT RE E L ++ G+ + IA L +S TV N++++I+RK Sbjct: 155 ELTSREREVLRLMAGGEGNGAIARGLVLSPKTVRNHVSNILRK 197 >gi|159901582|ref|YP_001547828.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894621|gb|ABX07700.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 209 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++F+L RE+ L +S+G + +IA L I TV NYI ++ +K RS Sbjct: 144 QEFQLAPREIHILEHLSQGLGTIDIANELNIDGRTVQNYITNLRKKLNCLERS 196 >gi|161523112|ref|YP_001586041.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348066|ref|YP_001941262.1| hypothetical protein BMULJ_05437 [Burkholderia multivorans ATCC 17616] gi|160346665|gb|ABX19749.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189338204|dbj|BAG47272.1| hypothetical protein BMULJ_05437 [Burkholderia multivorans ATCC 17616] Length = 381 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 28/59 (47%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F+LT RE +S G E A LGI T Y+ I+ KT T ++ ++ VR Sbjct: 316 FDLTPREAALAALLSGGLDLGEAAARLGIGIGTARGYLKQILAKTGTHRQAELVSLVVR 374 >gi|158315625|ref|YP_001508133.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111030|gb|ABW13227.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 217 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE + L ++ G+ + IA +L +S TV N++++I K R+ AI A Sbjct: 151 QLTDRERQVLDELARGRNNASIARVLNVSTRTVANHVSTIFAKLQLADRAEAIVRA 206 >gi|330953036|gb|EGH53296.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] Length = 260 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245 >gi|302545100|ref|ZP_07297442.1| epstein-Barr nuclear antigen 1 [Streptomyces hygroscopicus ATCC 53653] gi|302462718|gb|EFL25811.1| epstein-Barr nuclear antigen 1 [Streptomyces himastatinicus ATCC 53653] Length = 377 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E LT ++EG D A LG+S T Y+A IMR ++R A AVR ++ Sbjct: 318 EVLTLMAEGYKDDAAARKLGLSVRTYRRYVADIMRDLNVESRFQAGVRAVRAGLM 372 >gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 190 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L EG++S EIA L +S TV NY++ + K R Sbjct: 130 LTDRERQILQRAGEGRSSGEIAGELRLSEGTVRNYLSEAISKLGAANR 177 >gi|320010324|gb|ADW05174.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 230 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 156 LTPREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203 >gi|256786258|ref|ZP_05524689.1| response regulatory protein [Streptomyces lividans TK24] gi|289770149|ref|ZP_06529527.1| response regulatory protein [Streptomyces lividans TK24] gi|289700348|gb|EFD67777.1| response regulatory protein [Streptomyces lividans TK24] Length = 223 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L ++ G + EIA L IS TV ++ I K TR+GA+A A Sbjct: 162 LTDRERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVA 216 >gi|222106363|ref|YP_002547154.1| two component response regulator [Agrobacterium vitis S4] gi|221737542|gb|ACM38438.1| two component response regulator [Agrobacterium vitis S4] Length = 896 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G ELT RE + L + G ++ EIA L I+ NTV ++ +I K K+R+ A+ Sbjct: 835 GSLTELTQREDDVLQLMRWGLSNSEIATRLDINLNTVKSHAKNIFAKLGVKSRTQAV 891 >gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] Length = 891 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+ L ++EG ++ IA L +S +TV ++ +I K +R+ A+A + R + Sbjct: 830 LTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKVGAHSRTQAVAISRRLGV 889 Query: 246 V 246 + Sbjct: 890 I 890 >gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 213 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E +++GKT++EIA IL +S TV ++ +I +K + A+R+ + Sbjct: 151 LSDREFEVFMALAKGKTTNEIADILSLSPRTVGTHLYNIKQKLNASNSAEIALIAMRSGL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|326385152|ref|ZP_08206820.1| two-component transcriptional regulatory protein [Gordonia neofelifaecis NRRL B-59395] gi|326196117|gb|EGD53323.1| two-component transcriptional regulatory protein [Gordonia neofelifaecis NRRL B-59395] Length = 217 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 37/77 (48%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + K + G + T +E L + EG T+ +IA + ++ TV NY++ ++ Sbjct: 132 AVLMERLRKQQEQDAGPLADFTQQERTLLALLGEGLTNRQIADRMHLAEKTVKNYVSRLL 191 Query: 226 RKTATKTRSGAIAYAVR 242 K + R+ A +A R Sbjct: 192 TKLGMERRTQAAVFATR 208 >gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] Length = 199 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|172039771|ref|YP_001799485.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851075|emb|CAQ04051.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 248 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ELT RE E L ++ G T E+A L IS TV ++++I+RKT R Sbjct: 188 ELTPREHEVLRLLARGYTYKEMAERLFISVKTVETHVSNILRKTQQTNR 236 >gi|295132306|ref|YP_003582982.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980321|gb|ADF50786.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 205 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R++E L + +GKT+ +IA L I + TV + +++RK + YA++ Sbjct: 144 LTKRQIEILKLVGKGKTNQQIADALFIGKTTVETHRKNMIRKLGLHGPGELLRYALQ 200 >gi|21224518|ref|NP_630297.1| response regulator [Streptomyces coelicolor A3(2)] gi|4455739|emb|CAB36602.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 279 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L REV+ L ++ G T+ A LG+ TV +Y+ S MRK +TR+ A+A A R Sbjct: 218 LAPREVDVLACVAAGATNGAAAERLGVGPETVKSYLRSAMRKLGARTRTEAVAAARRTG 276 >gi|326382928|ref|ZP_08204618.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198518|gb|EGD55702.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 217 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LTG+E E T I +G T+ +IA + ++ T+ NY++ I+ K + R+ Sbjct: 155 LTGQEREVFTLIGQGMTNRQIADRMFLAEKTIKNYVSRILSKLDMQRRT 203 >gi|325271130|ref|ZP_08137690.1| response regulator [Pseudomonas sp. TJI-51] gi|324103735|gb|EGC01022.1| response regulator [Pseudomonas sp. TJI-51] Length = 241 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT REV + ++ G + EIA ++GI TV ++ + M KT R+ Sbjct: 184 LTRREVSVIEHVAAGCSDKEIARLMGIGFTTVRTHLKNAMHKTGASNRT 232 >gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE++ ++ G+T+ EI L +S +TV ++++I K A + R A+A Sbjct: 165 LTGRELDVARLVAVGRTNQEICAELHLSLSTVKTHLSNIQTKLAVRNRVEIAAWA 219 >gi|295395258|ref|ZP_06805465.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971893|gb|EFG47761.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L I+ G+T+ EI L ++ T+ +I ++ KT + R + +A+R Sbjct: 162 ELTPRERDILALIARGRTNQEICDELWLTMPTIKTHIGNLRAKTQARDRVQLVLFALRVG 221 Query: 245 IV 246 I Sbjct: 222 IA 223 >gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE++ + ++ G T+ E+A L ++ +TV ++AS+ K + R A+A R Sbjct: 168 DGGLTVRELDIVRAVARGLTNTEVAGELFVTVSTVKTHLASVQAKLGARNRVEVAAWAYR 227 Query: 243 NN 244 N Sbjct: 228 NG 229 >gi|223937686|ref|ZP_03629588.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893658|gb|EEF60117.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 454 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +S+G EIA LGIS TV+N++ + K TR+ A Sbjct: 397 LTDRELKVLNCVSKGYLDKEIAHELGISLWTVHNHLKNTYEKLNVHTRTEA 447 >gi|126661059|ref|ZP_01732143.1| hypothetical transcriptional regulator [Cyanothece sp. CCY0110] gi|126617670|gb|EAZ88455.1| hypothetical transcriptional regulator [Cyanothece sp. CCY0110] Length = 108 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 28/57 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE E L W+S G + E+A + IS NT+ NY + K S ++ Sbjct: 29 QQIRLTRREQELLEWLSLGYSYQEMAEGINISVNTIKNYFLRLREKFNAHNNSHLLS 85 >gi|328883008|emb|CCA56247.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 227 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 156 LTQREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203 >gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 218 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G + +IA LG+S TV N++ + + K R YA+ + Sbjct: 157 LTERETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 216 >gi|238059115|ref|ZP_04603824.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237880926|gb|EEP69754.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 220 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REVE + +++G +++EIA L IS T +++ I+ K + R+ + +A Sbjct: 154 LTNREVEIMDLVAQGLSNEEIAGRLEISHATTKTHVSRILTKLGLRDRAQLVVWA 208 >gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 233 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE L ++ G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 170 IDLTPREQSVLDLVARGLMNKEIARDLSTSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 229 Query: 244 NI 245 + Sbjct: 230 GL 231 >gi|313897472|ref|ZP_07831015.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312957842|gb|EFR39467.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 210 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++L RE+ + +++G + E+A L +S TV NY++S++ K + R+ + +N Sbjct: 145 YDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204 >gi|241889344|ref|ZP_04776645.1| two-component response transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863887|gb|EER68268.1| two-component response transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 199 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N+F S++ LT +E L I EG + EIA L +S T+ NYI++I+ K Sbjct: 131 NIFNSHN-------PLTNQEKIILLKIKEGLPNKEIANELFLSEGTIRNYISNILTKLNC 183 Query: 231 KTRSGAI 237 K R+ A+ Sbjct: 184 KNRTEAV 190 >gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 199 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEA 189 >gi|56696017|ref|YP_166371.1| hypothetical protein SPO1120 [Ruegeria pomeroyi DSS-3] gi|56677754|gb|AAV94420.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 251 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L R+ E L W+++GKT +I V+ G+S + + ++ +T + A+A A N+ Sbjct: 184 LNQRQRELLEWVADGKTMQDIQVLTGLSVSAIEKHLRKARDALGVETSAQAVAKAAFLNL 243 Query: 246 V 246 + Sbjct: 244 I 244 >gi|298207898|ref|YP_003716077.1| DNA-binding response regulator, LuxR family protein [Croceibacter atlanticus HTCC2559] gi|83850539|gb|EAP88407.1| DNA-binding response regulator, LuxR family protein [Croceibacter atlanticus HTCC2559] Length = 210 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE+E L +IS+G + +IA +L I+ TV+ Y + +K + +G I Sbjct: 150 LSSREIEVLNFISKGLKNKDIAEMLKINEKTVSTYKTRLQKKLNVDSVAGLI 201 >gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 199 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEA 189 >gi|228964507|ref|ZP_04125619.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795209|gb|EEM42703.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis serovar sotto str. T04001] Length = 176 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ELT RE E L I+EGK++ EIA L I+ TV ++++I Sbjct: 137 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNI 176 >gi|257790178|ref|YP_003180784.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257474075|gb|ACV54395.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 486 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 FELT RE E L +++ G+++ IA L IS NTV +I + KT ++ Sbjct: 420 FELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSK 469 >gi|222082949|ref|YP_002542314.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727628|gb|ACM30717.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 219 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L ++G+TS ++A LGIS T + ++MRK + + AYAVR Sbjct: 157 LTLRERQVLLLSAQGQTSRQMAERLGISPLTARKHRENLMRKLNLHSTAEVTAYAVR 213 >gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 242 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT + EG T+ EIA L ++ TV +I I+ K + R + A + Sbjct: 178 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 237 Query: 246 V 246 V Sbjct: 238 V 238 >gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp. P08] Length = 224 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT + EG T+ EIA L ++ TV +I I+ K + R + A + Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM 45100] Length = 240 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ELT RE E L ++ G T E+A L IS TV ++++I+RKT R Sbjct: 182 ELTRREKEVLRLLARGYTYREMAERLFISVKTVETHVSNILRKTQQSNR 230 >gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 203 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 165 LAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L Y+ ++ + S + + ELT E++ + +++GK + EI+ I+ +S+ T+ ++I++ Sbjct: 121 LTRYRKSVIEASQKIRVREGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISN 180 Query: 224 IMRKTATKTRSGAIAYAVRNN 244 ++ KT R+ +A+ + Sbjct: 181 MLGKTGLHNRTQLARWALESQ 201 >gi|91786204|ref|YP_547156.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91695429|gb|ABE42258.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 222 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE + ++ GK+ EI L ++ NTV+ Y A I+ KT T+ YA R+ Sbjct: 159 LSHREHQVFRLLTAGKSVGEIGAQLNLAPNTVSTYRARILEKTGTRNDVELALYAERH 216 >gi|330969423|gb|EGH69489.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 255 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 184 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 240 >gi|258591000|emb|CBE67295.1| Two component transcriptional regulator, LuxR family [NC10 bacterium 'Dutch sediment'] Length = 216 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 LT RE E + W+ +G T+ EIA L IS TV ++++I K Sbjct: 156 LTDREQEIVGWVIQGMTNKEIAARLEISDKTVKAHLSNIFSK 197 >gi|258510658|ref|YP_003184092.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477384|gb|ACV57703.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 200 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D L+ RE++ L G T+ ++A L +S TV NY++ + K TR AI A Sbjct: 137 DNPLSAREIDVLRLAKRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKA 194 >gi|197335139|ref|YP_002156737.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri MJ11] gi|197316629|gb|ACH66076.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri MJ11] Length = 203 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE+E L +++G + ++A L IS TV ++ S+++K K+R A Sbjct: 145 QLTARELEILQHVAKGMRNKQVADQLFISEATVKVHMKSLLKKLNVKSRVAA 196 >gi|126666054|ref|ZP_01737034.1| probable transcriptional regulator [Marinobacter sp. ELB17] gi|126629376|gb|EAZ99993.1| probable transcriptional regulator [Marinobacter sp. ELB17] Length = 257 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT R++ L +S+G+++ +IA L I+ TV ++++I+RK + R AI A Sbjct: 192 LTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLSVHNRVQAILSA 246 >gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae TIGR4] gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae] gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570] Length = 199 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|326331141|ref|ZP_08197437.1| two-component system response regulator TcsR2 [Nocardioidaceae bacterium Broad-1] gi|325951036|gb|EGD43080.1| two-component system response regulator TcsR2 [Nocardioidaceae bacterium Broad-1] Length = 202 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L +G + +IA L ++ +TV NY+++ + KT+T+ ++ A A RN Sbjct: 141 LTSRERDVLAASEDGSSIADIASRLFLAPSTVRNYLSAAIGKTSTRNKTEAALTARRNG 199 >gi|323491776|ref|ZP_08096951.1| response regulator [Vibrio brasiliensis LMG 20546] gi|323313911|gb|EGA67000.1| response regulator [Vibrio brasiliensis LMG 20546] Length = 210 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT RE++ L +++G + +IA L IS +TV ++ S+++K +R+ A Sbjct: 147 ELTDRELQILKEVAKGFRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAA 198 >gi|170747190|ref|YP_001753450.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653712|gb|ACB22767.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 228 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 G+ LT RE E L ++S G ++ E+A L +S TV + ++ RKT T Sbjct: 135 EAGESLGLTPREAEVLRFLSSGFSNKEVARRLALSVRTVETHRLNLRRKTQT 186 >gi|21222669|ref|NP_628448.1| response regulatory protein [Streptomyces coelicolor A3(2)] gi|8248775|emb|CAB93036.1| putative respose regulatory protein [Streptomyces coelicolor A3(2)] Length = 223 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L ++ G + EIA L IS TV ++ I K TR+GA+A A Sbjct: 162 LTDRERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVA 216 >gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 211 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L I+EGKT+ EI L IS +TV + ++M+K + I A + Sbjct: 150 KLTRREQEVLRCIAEGKTTVEIGETLFISPHTVETHRRNLMQKFEVSNAAALIRVATQYQ 209 Query: 245 IV 246 ++ Sbjct: 210 LI 211 >gi|300694462|ref|YP_003750435.1| nitrate/nitrite response regulator in two-component regulatory system with narx, regulates anaerobic respiration and fermentation (luxr/uhpa familiy) [Ralstonia solanacearum PSI07] gi|299076499|emb|CBJ35824.1| Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum PSI07] Length = 217 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + + + G ++ EIA L ++ +TV ++ +I++K +R YAV N + Sbjct: 155 LTARERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214 >gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 38/61 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT E++ + +++GK + EI+ I+ +S+ T+ ++I++++ KT R+ +A+ + Sbjct: 154 VELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALES 213 Query: 244 N 244 Sbjct: 214 Q 214 >gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6] gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6] Length = 199 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLHAGNRTEAANIA 193 >gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] Length = 226 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 164 LLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 +L+A+Q N +H + L+ RE E + I+ G T E+A L IS TV Sbjct: 140 VLSAFQNGSSTNSSIGGSIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISVKTVET 199 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +++S++RK R+ +A IV Sbjct: 200 HVSSVLRKLQLSNRTELTRWAADRRIV 226 >gi|171060520|ref|YP_001792869.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777965|gb|ACB36104.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 224 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LTGRE+E L + G + A +G+S TV+NY I +K + YA ++ Sbjct: 162 QLTGRELEVLQLLLAGLGVEVAAARIGLSEKTVSNYQTQIRQKLGVANSIELVHYARQHG 221 Query: 245 IV 246 ++ Sbjct: 222 LM 223 >gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 226 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + +GKT+ EIA L IS TV ++ I+ K R+ A A+ + Sbjct: 163 LTAREQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGL 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|91775168|ref|YP_544924.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91709155|gb|ABE49083.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 213 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E ++ GK +EI+ IL IS+ TV NY + +K + + A+++ + Sbjct: 151 LSAREFEVFRLLAAGKGVEEISTILKISQKTVANYQTLLKQKLGITSPIELVRLAIKHGV 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 229 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 163 GLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTV 217 GL+A++ A + + ++ LTGRE E L ++ G ++D+IA L +S TV Sbjct: 136 GLIASFLAQGGSAGEGADAAEYAERLAALTGREREVLVQVAGGHSNDQIADRLVVSPLTV 195 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ M K + R+ + A + +V Sbjct: 196 KTHVNRAMAKLGARDRAQLVVIAYESGLV 224 >gi|154509662|ref|ZP_02045304.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC 17982] gi|153799296|gb|EDN81716.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC 17982] Length = 216 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 165 LAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA + + F + +V D EL + RE E + I+ G T E+A L IS TV ++ Sbjct: 133 LAGFVLDAFGTGEVST-TDTELDLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHV 191 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +S++RK R+ +A++ +IV Sbjct: 192 SSVLRKLQLSNRNELTRWAMQRHIV 216 >gi|59712516|ref|YP_205292.1| DNA-binding response regulator in two-component regulatory system with NarQ [Vibrio fischeri ES114] gi|59480617|gb|AAW86404.1| DNA-binding response regulator in two-component regulatory system with NarQ [Vibrio fischeri ES114] Length = 203 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE+E L +++G + ++A L IS TV ++ S+++K K+R A Sbjct: 145 QLTARELEILQHVAKGMRNKQVADKLFISEATVKVHMKSLLKKLNVKSRVAA 196 >gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] Length = 215 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G D+E LT RE E L ++G ++ EIA +S TV +++ I+ K A + R + Y Sbjct: 149 GADYERLTPREREILLRAAQGLSNAEIAAAEFLSEATVKTHVSRILGKLALRDRVQLVVY 208 Query: 240 AVRNNIV 246 A + ++ Sbjct: 209 AYEHGLL 215 >gi|317123319|ref|YP_004097431.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587407|gb|ADU46704.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 985 Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE+E L ++ G ++ +I L IS TV+ ++++++ K R+ A A A Sbjct: 923 ELTPRELEVLALVARGLSNGQIGKQLYISTKTVSVHVSNLLAKLGASGRTEAAAIA 978 >gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974M2] Length = 199 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H + +LT RE E +T I+EG T+ EI L +S T +++ I+ K + R+ + Sbjct: 149 HSSRLDDLTDREREVMTLIAEGLTNAEIGSRLFLSPATARTHVSRILLKLGARDRTQLVV 208 Query: 239 YA 240 A Sbjct: 209 MA 210 >gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE+E L +++GK++ EIA L I TV ++ S+ RK R+ A A Sbjct: 143 KLSPRELEVLEGLTQGKSNKEIARDLDIREPTVKLHVKSLYRKINASNRTHAAMIA 198 >gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 237 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E LT I+ G ++ EIA L I+ +TV +I + K + R+ A+ A Sbjct: 164 DLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVA 219 >gi|328551897|gb|AEB22389.1| two-component response regulator [Bacillus amyloliquefaciens TA208] Length = 214 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE++ I EGK++ IA L ++ TV NY++ I+ K R+ Y Sbjct: 156 LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209 >gi|239981698|ref|ZP_04704222.1| two-component system response regulator [Streptomyces albus J1074] Length = 243 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 156 LTPREVEVLVRVAEGEDTRVIAAGMGIAPSTARTHVQRVLMKLGVGSR 203 >gi|238024634|ref|YP_002908866.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Burkholderia glumae BGR1] gi|237879299|gb|ACR31631.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Burkholderia glumae BGR1] Length = 214 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGQTLTEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHRL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|284989297|ref|YP_003407851.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062542|gb|ADB73480.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 270 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 33/49 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT R+ + T ++EG +++EIA L +S TV +++ ++MR+ +TR+ Sbjct: 208 LTERQRDVATLVAEGLSNEEIASRLFLSPATVKSHLTAVMRRLDIRTRT 256 >gi|157850155|gb|ABV89903.1| acyl-homoserine lactone receptor [Burkholderia ubonensis] Length = 133 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 20/31 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNT 216 LT RE E L W +EGKT+ EI IL IS T Sbjct: 103 LTAREREVLCWTAEGKTACEIGQILSISERT 133 >gi|184200079|ref|YP_001854286.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183580309|dbj|BAG28780.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 252 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT E E L WI++G + EIA + +S +V +Y++ + K A + R Sbjct: 178 KLTDCEQETLQWIAKGLNNAEIAERMSVSHGSVKSYVSHLCEKLAVRDR 226 >gi|87122320|ref|ZP_01078202.1| transcriptional regulatory protein degu [Marinomonas sp. MED121] gi|86162463|gb|EAQ63746.1| transcriptional regulatory protein degu [Marinomonas sp. MED121] Length = 206 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 35/71 (49%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 Y V + ELT RE+ L ++ G + IA L IS TV + ++ +K + +G Sbjct: 136 YQVQEDEKEELTKRELAVLKELASGAANKTIANNLSISVRTVETHRQNLKQKLGIHSAAG 195 Query: 236 AIAYAVRNNIV 246 YA+ + ++ Sbjct: 196 LTKYAIEHKLI 206 >gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 217 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E + ++EG T+ EIA L IS TV ++ ++ K R+ A AV+ Sbjct: 152 LTSREQEVVELVAEGLTNKEIARKLDISPATVKVHVERLIGKLGVADRTQAAVMAVK 208 >gi|291545304|emb|CBL18412.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus sp. SR1/5] Length = 206 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 31/49 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++ RE++ + I+ G ++ EIA L +S TV NY++SI+ K + R+ Sbjct: 148 ISERELDIIRLIANGYSNKEIAAELFLSEGTVRNYLSSILDKLQLRDRT 196 >gi|262279135|ref|ZP_06056920.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259486|gb|EEY78219.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 239 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT RE E + +S+G + +A +LGIS T+ ++ + MRK R+ Sbjct: 181 YGLTPREQEVVRLVSKGLSDKHVANLLGISFTTLRTHLNNAMRKIGCNNRT 231 >gi|302346377|ref|YP_003814675.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] gi|302151055|gb|ADK97316.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] Length = 214 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E E L I+ G T+ EIA S +TVN + +I RK AI YA+R+ + Sbjct: 147 LTKTETEILKEIALGATTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEAIRYAMRSGL 206 Query: 246 V 246 V Sbjct: 207 V 207 >gi|254477704|ref|ZP_05091090.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11] gi|214031947|gb|EEB72782.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11] Length = 261 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ E L+ ++EG + IA LG+S V+ + A+ + TR A+A A+ Sbjct: 199 LTQRQREVLSLLAEGMMTARIAETLGLSEAAVSLHFANARKALGASTREHALALALTRGF 258 Query: 246 V 246 + Sbjct: 259 I 259 >gi|145295107|ref|YP_001137928.1| hypothetical protein cgR_1050 [Corynebacterium glutamicum R] gi|140845027|dbj|BAF54026.1| hypothetical protein [Corynebacterium glutamicum R] Length = 203 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L +G +++EIAV ++ T NY++ M K + R Sbjct: 143 LTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNR 190 >gi|113867311|ref|YP_725800.1| ATP-dependent transcription regulator LuxR [Ralstonia eutropha H16] gi|113526087|emb|CAJ92432.1| ATP-dependent transcriptional regulator,MalT-family [Ralstonia eutropha H16] Length = 947 Score = 35.4 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 EL+ RE + + + +G + +IA LG+S TV ++ +I RK +R A+A Sbjct: 878 ELSDREADVVRLLGQGLPNKKIARTLGLSPETVKWHLRNIFRKLGVSSRDEAVA 931 >gi|56479349|ref|YP_160938.1| LuxR family DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56315392|emb|CAI10037.1| DNA-binding response regulator, LuxR family [Aromatoleum aromaticum EbN1] Length = 215 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE + L I+EG TS IA L ++ +TV + +IMRK + + YA+R+ I Sbjct: 151 ITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRKLDLHSVAELTKYAIRSGI 210 >gi|114562693|ref|YP_750206.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333986|gb|ABI71368.1| transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 210 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 YQ+ M ++D +LT RE E L + G T+ +IA L +S +T+ ++ RK Sbjct: 132 YQSLMSVNHD---DDSEQLTIREREVLQTLLSGSTNLDIANQLFVSESTIKTHLYRAFRK 188 Query: 228 TATKTRSGAIAYA 240 +R AIA+A Sbjct: 189 IGVSSRGQAIAWA 201 >gi|325048879|dbj|BAJ79306.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis] Length = 420 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 EL RE E L + G+ + I+ LG+S +TV ++A ++RK + ++R Sbjct: 356 ELAPREFEVLEHLVAGRRNKAISERLGVSESTVKFHVAGVLRKLSVESR 404 >gi|302868454|ref|YP_003837091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302571313|gb|ADL47515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 256 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V+ +D L+ RE+E L +EG ++ +IA L ++ TV ++ +I K + +R A+ Sbjct: 161 VYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAV 220 Query: 238 AYAVRNNIV 246 AV +I+ Sbjct: 221 NKAVAASII 229 >gi|261212443|ref|ZP_05926728.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341] gi|260838374|gb|EEX65030.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341] Length = 208 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE + +GK EIA L +S TV+ + A+I+ K I +A++++ Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203 Query: 245 IV 246 ++ Sbjct: 204 LL 205 >gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C] gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C] Length = 233 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 167 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 226 Query: 242 RNNI 245 + Sbjct: 227 ERGL 230 >gi|157375088|ref|YP_001473688.1| putative nitrate/nitrite response regulator; NarL [Shewanella sediminis HAW-EB3] gi|157317462|gb|ABV36560.1| putative nitrate/nitrite response regulator; NarL [Shewanella sediminis HAW-EB3] Length = 213 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+ GK++ +IA LGI+ TV ++ ++++K K+R A +AV + I Sbjct: 152 LTQRELQNLKLIAAGKSNKDIANKLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKI 211 >gi|149926201|ref|ZP_01914463.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825019|gb|EDM84231.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 228 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE + LT I++G+ EIA +L +S T++ Y A +++K + + YA+ Sbjct: 166 QLTRRERQVLTLIAQGRPRREIAELLKVSPRTIDAYRARLLQKLNLDSSVQLVKYAI 222 >gi|103487939|ref|YP_617500.1| two component LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978016|gb|ABF54167.1| two component transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 210 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA--IAYA 240 LT RE E L ++ G + IA LG+S TV + AS+M K A ++ S A IA+A Sbjct: 143 LTPREKEVLDGLARGYPNKTIAYDLGVSSRTVEVHRASLMSKLAVRSLSDALRIAFA 199 >gi|330963452|gb|EGH63712.1| DNA binding response regulator, LuxR family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 262 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 189 KLSRRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245 >gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 205 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE + L I++G + EIA +L IS+ TV+ + +M+K + + I +A R Sbjct: 137 KLTRREKQILKLIADGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAYR 194 >gi|293189077|ref|ZP_06607804.1| nitrate/nitrite response regulator protein NarL [Actinomyces odontolyticus F0309] gi|292821991|gb|EFF80923.1| nitrate/nitrite response regulator protein NarL [Actinomyces odontolyticus F0309] Length = 216 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 165 LAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA + + F + +V D EL + RE E + I+ G T E+A L IS TV ++ Sbjct: 133 LAGFVLDAFGTGEVSI-TDTELDLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHV 191 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +S++RK R+ +A++ +IV Sbjct: 192 SSVLRKLQLSNRNELTRWAMQRHIV 216 >gi|291453559|ref|ZP_06592949.1| two-component system response regulator [Streptomyces albus J1074] gi|291356508|gb|EFE83410.1| two-component system response regulator [Streptomyces albus J1074] Length = 236 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 149 LTPREVEVLVRVAEGEDTRVIAAGMGIAPSTARTHVQRVLMKLGVGSR 196 >gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 203 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 38/61 (62%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT E++ + +++GK + EI+ I+ +S+ T+ ++I++++ KT R+ +A+ + Sbjct: 141 VELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALES 200 Query: 244 N 244 Sbjct: 201 Q 201 >gi|282865473|ref|ZP_06274524.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559517|gb|EFB65068.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 230 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 156 LTPREVEVLLRVAEGEDTRLIAAGMGIASSTARTHVQRVLMKLGVGSR 203 >gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] Length = 199 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|307324296|ref|ZP_07603504.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890027|gb|EFN21005.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 156 LTPREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203 >gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E LT I+ G ++ EIA L I+ +TV +I + K + R+ A+ A Sbjct: 153 DLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVA 208 >gi|183980166|ref|YP_001848457.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183173492|gb|ACC38602.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 220 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + G EL+ RE + L ++ G+T+ +IA L ++ NTV +Y+ S++ + R A+ Sbjct: 152 ISTGNPLELSRREYQVLERLAIGETNAQIAQKLQLAPNTVKSYVQSLLAHLDARNRLDAV 211 Query: 238 AYA 240 A Sbjct: 212 IKA 214 >gi|148273247|ref|YP_001222808.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831177|emb|CAN02129.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 220 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + ++ G ++ E+A + +S +TV +++SI+ K A + R + YA + + Sbjct: 155 LSAREKDVFGHVARGLSNAEVAALEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 217 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ E+A +S TV ++A I+ K + R A+ A + Sbjct: 151 LTPRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLRDRVQAVVVAYETGL 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 241 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G + EIA L +S TV ++ I+ K RS A+A A R+ + Sbjct: 178 LTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVHRILLKLGLSDRSQAVAVAYRSGL 237 Query: 246 V 246 + Sbjct: 238 I 238 >gi|307825543|ref|ZP_07655761.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307733429|gb|EFO04288.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 132 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K+ V+ G+ LT RE + ++EG IA +L +S TVN ++ +I K + Sbjct: 3 IKAKMVNQGR---LTAREADVAMLMAEGHADKVIARLLAVSIRTVNAHVGNIYEKLELHS 59 Query: 233 RSGAIAYAVRNN 244 S ++ AV NN Sbjct: 60 ESIGVSTAVINN 71 >gi|315505170|ref|YP_004084057.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411789|gb|ADU09906.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 256 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V+ +D L+ RE+E L +EG ++ +IA L ++ TV ++ +I K + +R A+ Sbjct: 161 VYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAV 220 Query: 238 AYAVRNNIV 246 AV +I+ Sbjct: 221 NKAVAASII 229 >gi|269794456|ref|YP_003313911.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096641|gb|ACZ21077.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 224 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT EV + I EG ++ EIA L I+ TV N+I S++ K + R+ A+ Sbjct: 154 DLTPSEVRVVDLIGEGLSNREIAERLSIAEKTVKNHITSLLAKMGLQRRTQVAAW 208 >gi|218549608|ref|YP_002383399.1| transcriptional regulator NarP [Escherichia fergusonii ATCC 35469] gi|218357149|emb|CAQ89784.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia fergusonii ATCC 35469] gi|325498005|gb|EGC95864.1| transcriptional regulator NarP [Escherichia fergusonii ECD227] Length = 216 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA L IS TV +I +++RK ++R A Sbjct: 156 LTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAA 206 >gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] Length = 189 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 129 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 183 >gi|325520232|gb|EGC99400.1| two component LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 215 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ + I G+T +IA L +S TV+ Y I+ K + I YAVR+++ Sbjct: 149 LSTRELDVMRRIVAGQTVTQIASALDLSAKTVSTYKMRILEKMELPHEAALIRYAVRHDL 208 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] gi|300073317|gb|ADJ62716.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + +G+ +IA L +S TV+ Y + +++K + + I YA++NN+ Sbjct: 148 LSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNADIIYYAIKNNL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|226308958|ref|YP_002768918.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226188075|dbj|BAH36179.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 420 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 EL RE E L + G+ + I+ LG+S +TV ++A ++RK ++R Sbjct: 356 ELAPREFEVLEHLVAGRRNKAISERLGVSESTVKFHVAGVLRKLGVESR 404 >gi|21730643|pdb|1L3L|A Chain A, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|21730644|pdb|1L3L|B Chain B, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|21730645|pdb|1L3L|C Chain C, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|21730646|pdb|1L3L|D Chain D, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna gi|23200109|pdb|1H0M|A Chain A, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna gi|23200110|pdb|1H0M|B Chain B, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna gi|23200111|pdb|1H0M|C Chain C, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna gi|23200112|pdb|1H0M|D Chain D, Three-Dimensional Structure Of The Quorum Sensing Protein Trar Bound To Its Autoinducer And To Its Target Dna Length = 234 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +E L WI+ GKT +EIA + G+ N+V + ++ ++++ A A+R + Sbjct: 174 LDPKEATYLRWIAVGKTXEEIADVEGVKYNSVRVKLREAXKRFDVRSKAHLTALAIRRKL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|318081701|ref|ZP_07989013.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 85 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G + E+A L +S+ TV NY+++ ++K A + R+ A+ A Sbjct: 25 LTTREAEVLRAAAGGAGNAELATALHLSQGTVRNYLSTAIQKLAARNRADAVRIA 79 >gi|324114391|gb|EGC08360.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 214 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE++ L +++G ++ +IA L IS TV +I +++RK ++R A Sbjct: 154 LTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|300933646|ref|ZP_07148902.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium resistens DSM 45100] Length = 201 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REV+ + GK+S IA L +S TV N+++S + KT R Sbjct: 141 LTPREVDVCREVLTGKSSANIAKALHLSEGTVRNHVSSAITKTQASNR 188 >gi|37675987|ref|NP_936383.1| putative fimbrial protein Z, transcriptional regulator [Vibrio vulnificus YJ016] gi|320158130|ref|YP_004190508.1| putative two-component response regulator [Vibrio vulnificus MO6-24/O] gi|37200527|dbj|BAC96353.1| putative fimbrial protein Z, transcriptional regulator [Vibrio vulnificus YJ016] gi|319933442|gb|ADV88305.1| putative two-component response regulator [Vibrio vulnificus MO6-24/O] Length = 199 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 EL+ RE + ++ +GKT+ EIA IL IS T++ Y ++ K Sbjct: 142 ELSDREAAVMNYLLKGKTNREIANILSISDKTISTYKRRLLNK 184 >gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 229 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E + +EG ++ EIA L +S TV +I M K + R+ + A + Sbjct: 154 ELTARERETMAMAAEGMSNSEIAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQTG 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|318042426|ref|ZP_07974382.1| two-component response regulator [Synechococcus sp. CB0101] Length = 253 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L RE E L +++GK + EIA L I+ T +Y++SI+ K R+ A A+A+ + Sbjct: 190 DLNQREREILPLLAKGKKNREIAAELFIAETTTRDYVSSILSKLQVSNRAAAAAWAIEHG 249 Query: 245 IV 246 V Sbjct: 250 FV 251 >gi|315937155|gb|ADU56162.1| hypothetical protein CA915-41 [uncultured organism CA915] Length = 805 Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 +LT E+ T + G T+ +IA L I+ +TV ++ + RK ++RSG Sbjct: 750 QLTDAELRVATLAAAGNTNRQIAARLSITVSTVEQHLTKVYRKLNVRSRSG 800 >gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Synergistetes bacterium SGP1] Length = 229 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE L W+S+G ++ E+A +S TV N+++ +++K + R+ A A Sbjct: 149 DLSPREKVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSHMLKKLELRDRTQAAILA 204 >gi|256838723|ref|ZP_05544233.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739642|gb|EEU52966.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 254 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 27/45 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 D +LT RE E L I +G S EIA L +S TVNN+ +I+ K Sbjct: 190 DQQLTKREKEILLLIRQGFLSKEIAYKLNLSIYTVNNHRKNILAK 234 >gi|154509006|ref|ZP_02044648.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC 17982] gi|153798640|gb|EDN81060.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC 17982] Length = 204 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A Sbjct: 133 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 192 Query: 239 Y 239 + Sbjct: 193 W 193 >gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305] gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305] gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 214 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + EIA +L IS TV+ + +M+K + + I +A R Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYR 203 >gi|307133584|dbj|BAJ19074.1| putative transcriptional regulator [Streptomyces sp. SANK 62799] Length = 431 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +V L+ ++EG ++ +IA L +SR TV+ +++ + TR +A A Sbjct: 352 LTAAQVRILSLLAEGSSNGDIATSLQLSRQTVDYHLSRLRHALGAATRPALVARA 406 >gi|303243469|ref|ZP_07329811.1| transcriptional regulator, LysR family [Methanothermococcus okinawensis IH1] gi|302486030|gb|EFL48952.1| transcriptional regulator, LysR family [Methanothermococcus okinawensis IH1] Length = 277 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK----TRSGAIAYAV 241 +T +++E L ISE K+ +++A IL I ++VN I + +K K + SG I Sbjct: 17 ITEKQIEILKLISENKSQNKVAKILNIPPSSVNIQIKRLEKKLGVKLIYSSTSGTILTES 76 Query: 242 RNNIV 246 NIV Sbjct: 77 AQNIV 81 >gi|257792554|ref|YP_003183160.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257476451|gb|ACV56771.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 550 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ LT RE E L +++ G+T IA L ++ NTV +++ +I K TR Sbjct: 489 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTR 541 >gi|120601631|ref|YP_966031.1| two component LuxR family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120561860|gb|ABM27604.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris DP4] Length = 235 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++EG + EIA +L +S TV + A+ M K + + A+A R + Sbjct: 164 LTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 223 >gi|19552175|ref|NP_600177.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389840|ref|YP_225242.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323716|dbj|BAB98342.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41325175|emb|CAF19656.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 203 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE E L +G +++EIAV ++ T NY++ M K + R Sbjct: 143 LTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNR 190 >gi|121603701|ref|YP_981030.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120592670|gb|ABM36109.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 214 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E I+ G + +IA L +S T++ + A++M+K + +S I YA+++ Sbjct: 148 KLTDREFEVFRLIAIGMSVTDIAGRLNLSAKTISTHKANLMQKMNLQNQSELIRYAIKHG 207 Query: 245 I 245 + Sbjct: 208 V 208 >gi|325298451|ref|YP_004258368.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] gi|324318004|gb|ADY35895.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] Length = 202 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + G T+ EIA L IS +TV + +I RK + +G YA+ N + Sbjct: 133 LSQREKEIICCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGLTIYAIVNKL 192 Query: 246 V 246 V Sbjct: 193 V 193 >gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 215 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G ++ EIA L + TV +Y+++++ K + R+ A+ A+ + Sbjct: 155 LTDRECDVLRLLAGGYSNREIAGALRTTEGTVKSYVSNVLSKLGVRDRTRAVLKALELGV 214 Query: 246 V 246 + Sbjct: 215 L 215 >gi|148974075|ref|ZP_01811608.1| putative tetrathionate reductase complex: response regulator [Vibrionales bacterium SWAT-3] gi|145965772|gb|EDK31020.1| putative tetrathionate reductase complex: response regulator [Vibrionales bacterium SWAT-3] Length = 200 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE++ L I +GK + +IA L I+ TV + AS+M+K + KT Sbjct: 142 LTEREIDILKQIIDGKRNQKIADELCIAVRTVEVHRASLMKKFSAKT 188 >gi|330820500|ref|YP_004349362.1| DNA-binding response regulator, LuxR family [Burkholderia gladioli BSR3] gi|327372495|gb|AEA63850.1| DNA-binding response regulator, LuxR family [Burkholderia gladioli BSR3] Length = 214 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIATGQTLTEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHRL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|307296354|ref|ZP_07576181.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878156|gb|EFN09379.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 250 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W+ G + I+ + IS TV ++ +++RK K R+ A +A + + Sbjct: 158 LSDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNRTQAAIWAANHGM 217 >gi|293192365|ref|ZP_06609476.1| DNA-binding response regulator VraR [Actinomyces odontolyticus F0309] gi|292820280|gb|EFF79274.1| DNA-binding response regulator VraR [Actinomyces odontolyticus F0309] Length = 204 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A Sbjct: 133 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 192 Query: 239 Y 239 + Sbjct: 193 W 193 >gi|186470607|ref|YP_001861925.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196916|gb|ACC74879.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 215 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I G+T+ IA+ L +S TV+ + A I+ K +G + YA+R+ + Sbjct: 149 LSPREFDVFRRIVAGQTTTGIALELCLSVKTVSTHKAHILEKMQMPNENGLVRYAIRHKL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|333024623|ref|ZP_08452687.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744475|gb|EGJ74916.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 190 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L + G + E+A L +S+ TV NY+++ ++K A + R+ A+ A Sbjct: 130 LTTREAEVLRAAAGGAGNAELATALHLSQGTVRNYLSTAIQKLAARNRADAVRIA 184 >gi|308172085|ref|YP_003918790.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307604949|emb|CBI41320.1| two-component response regulator RBAM_002490 [Bacillus amyloliquefaciens DSM 7] gi|328910154|gb|AEB61750.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens LL3] Length = 214 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE++ I EGK++ IA L ++ TV NY++ I+ K R+ Y Sbjct: 156 LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVTNRTELTLY 209 >gi|297580291|ref|ZP_06942218.1| transcriptional regulator UhpA [Vibrio cholerae RC385] gi|297535937|gb|EFH74771.1| transcriptional regulator UhpA [Vibrio cholerae RC385] Length = 208 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE + +GK EIA L +S TV+ + A+I+ K I +A++++ Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203 Query: 245 IV 246 ++ Sbjct: 204 LL 205 >gi|229491697|ref|ZP_04385518.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229321378|gb|EEN87178.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 420 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 EL RE E L + G+ + I+ LG+S +TV ++A ++RK ++R Sbjct: 356 ELAPREFEVLEHLVAGRRNKAISERLGVSESTVKFHVAGVLRKLGVESR 404 >gi|228968226|ref|ZP_04129225.1| Two-component response regulator ComA [Bacillus thuringiensis serovar sotto str. T04001] gi|228791489|gb|EEM39092.1| Two-component response regulator ComA [Bacillus thuringiensis serovar sotto str. T04001] Length = 213 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E L +S+G ++ +IA L +S V + I +K +RS A+ A+R+ I Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRHGI 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|288574077|ref|ZP_06392434.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569818|gb|EFC91375.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 832 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + +SEG ++ EIA L +S NTV Y+ SI +K +R Sbjct: 775 LTFRENDVALLVSEGLSNREIAKRLFLSENTVKFYLKSIFQKLGISSR 822 >gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 229 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + T RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 166 IDFTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEH 225 Query: 244 NI 245 + Sbjct: 226 GL 227 >gi|134095013|ref|YP_001100088.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133738916|emb|CAL61963.1| Transcriptional regulator, LuxR family [Herminiimonas arsenicoxydans] Length = 185 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E + +GKTS IA +G+S TV + A +MRK T S Sbjct: 126 LTPREREIAAMLVDGKTSKLIARQIGLSPRTVEMHRAKLMRKFTASTTS 174 >gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 221 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E + + EG +++EIA L +S TV +++ M K + R+ + A Sbjct: 154 DLTDREREVVALVGEGLSNEEIAARLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETG 213 Query: 245 IV 246 +V Sbjct: 214 LV 215 >gi|121725788|ref|ZP_01679088.1| transcriptional regulator UhpA [Vibrio cholerae V52] gi|147671836|ref|YP_001215461.1| transcriptional regulator UhpA [Vibrio cholerae O395] gi|153211907|ref|ZP_01947754.1| transcriptional regulator UhpA [Vibrio cholerae 1587] gi|153830962|ref|ZP_01983629.1| transcriptional regulator UhpA [Vibrio cholerae 623-39] gi|229528490|ref|ZP_04417881.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)] gi|254285705|ref|ZP_04960668.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226] gi|262168530|ref|ZP_06036226.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27] gi|262191666|ref|ZP_06049843.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT 5369-93] gi|121631553|gb|EAX63921.1| transcriptional regulator UhpA [Vibrio cholerae V52] gi|124116983|gb|EAY35803.1| transcriptional regulator UhpA [Vibrio cholerae 1587] gi|146314219|gb|ABQ18759.1| transcriptional regulator UhpA [Vibrio cholerae O395] gi|148873558|gb|EDL71693.1| transcriptional regulator UhpA [Vibrio cholerae 623-39] gi|150424202|gb|EDN16140.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226] gi|227015255|gb|ACP11464.1| transcriptional regulator UhpA [Vibrio cholerae O395] gi|229334852|gb|EEO00338.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)] gi|262023059|gb|EEY41764.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27] gi|262032455|gb|EEY51016.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT 5369-93] gi|327485694|gb|AEA80100.1| Transcriptional regulatory protein UhpA [Vibrio cholerae LMA3894-4] Length = 208 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE + +GK EIA L +S TV+ + A+I+ K I +A++++ Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203 Query: 245 IV 246 ++ Sbjct: 204 LL 205 >gi|320533369|ref|ZP_08034060.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon 171 str. F0337] gi|320134411|gb|EFW26668.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon 171 str. F0337] Length = 166 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A+ Sbjct: 100 DLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 154 >gi|296119033|ref|ZP_06837606.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM 20306] gi|295968131|gb|EFG81383.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM 20306] Length = 207 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT RE E + +G + +EIA ++ ++ T NY++S M K + R Sbjct: 144 DSPLTEREAEVVNAAGQGGSVEEIAQLVFLAPGTTRNYLSSAMTKIGAQNR 194 >gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334] gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334] Length = 199 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564] gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564] Length = 199 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEA 189 >gi|302526792|ref|ZP_07279134.1| predicted protein [Streptomyces sp. AA4] gi|302435687|gb|EFL07503.1| predicted protein [Streptomyces sp. AA4] Length = 195 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE + L +++G + EIA L S TV + I + + R+ A+A+A+R + Sbjct: 135 LDARERDVLRMVADGHETAEIASALAYSARTVTTIVHDITHRLRLRNRAHAVAFALRQGL 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|256832826|ref|YP_003161553.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686357|gb|ACV09250.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 226 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E ++EG ++ EIA L + TV ++ S M KT T R+ Sbjct: 163 LTDREREITALVAEGFSTAEIATRLYLGEATVKTHLKSAMNKTGTDNRT 211 >gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 239 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L ++ G + EIA L +SR TV ++ +I KT T +R A A + Sbjct: 177 LSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAK 233 >gi|209519712|ref|ZP_03268500.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209499856|gb|EDZ99923.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 215 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E I G++ EIA L +S T++ + I+ K +G + YA+R+N+ Sbjct: 149 LSDREFEVFRRIVAGQSVTEIAHELCVSVKTISTHKTRILDKMQMPNENGLVRYAIRHNL 208 >gi|304321066|ref|YP_003854709.1| Two Component Transcriptional Regulator, LuxR family protein [Parvularcula bermudensis HTCC2503] gi|303299968|gb|ADM09567.1| Two Component Transcriptional Regulator, LuxR family protein [Parvularcula bermudensis HTCC2503] Length = 226 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT R+ E + E ++ EIA LG+S NTV +I SI K + R+ A A+R Sbjct: 160 KLTPRQKEIFIQLGEEASNQEIADNLGLSINTVRVHIQSIATKLNERNRTKIAALALR 217 >gi|307611008|emb|CBX00632.1| hypothetical protein LPW_23511 [Legionella pneumophila 130b] Length = 233 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT ++ ECL ++ GK+ EIA IL S T+ ++I + K T+S I A + Sbjct: 162 KLTNKQSECLFYLLRGKSMKEIAFILNRSPRTIEDHINLLKYKFNCVTKSQLIDKAFQ 219 >gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 148 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 207 Query: 242 RNNI 245 + Sbjct: 208 ERGL 211 >gi|258513767|ref|YP_003189989.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257777472|gb|ACV61366.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 470 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + T E +I +G T EIA L ISR+TV ++ +++RK R +A V N Sbjct: 407 YNFTASEKRVYEFICKGWTDPEIAAHLNISRHTVKFHVRNLLRKAGVSNRKELLAQLVSN 466 >gi|227549492|ref|ZP_03979541.1| possible transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078435|gb|EEI16398.1| possible transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 240 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ +T+ EIA L I TV Y++ ++ K + R G +A + I Sbjct: 171 LTPRELEVLERVALAETNAEIAAHLHIGAATVKTYVSRLIAKLGVRDRVGLAVWAHTSGI 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|222054376|ref|YP_002536738.1| two component transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221563665|gb|ACM19637.1| two component transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 212 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 G++ L+ RE E L ++ G+T+ +IA GIS TV +Y + I+ K Sbjct: 146 QGRERLLSDREKEVLVKLALGETNGDIAAFFGISVRTVESYFSRIIAK 193 >gi|56478683|ref|YP_160272.1| two-component system response regulator [Aromatoleum aromaticum EbN1] gi|56314726|emb|CAI09371.1| Two-component system response regulator [Aromatoleum aromaticum EbN1] Length = 210 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 170 ANMFKSYD-VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 AN+ D G E LT RE++ + I G + ++ V + +S TV+ Y I+ K Sbjct: 131 ANLLMQMDRAREGAPHEKLTAREMQVMMKIVRGMSLTDVGVQMCLSVKTVSTYRMRILEK 190 Query: 228 TATKTRSGAIAYAVRNNIV 246 + + + + YA+RN ++ Sbjct: 191 LSLSSNAELVQYAMRNGLL 209 >gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ++EG+++DEIA L IS T +I+ + K + R + A + + Sbjct: 151 LTARENEVVRLVAEGRSNDEIAAALVISPLTAKTHISRAITKLGLRDRVQLVITAYEHGL 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 239 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L ++ G + EIA L +SR TV ++ +I KT T +R A A + Sbjct: 177 LSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAK 233 >gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 158 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L + G T+ +IA LGI+ TV +++ I K +R A + V + Sbjct: 97 ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRIFNKLDLVSRVQAAIFCVEHQ 156 Query: 245 I 245 + Sbjct: 157 L 157 >gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243] gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 223 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + EIA +L IS TV+ + +M+K + + I +A R Sbjct: 155 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYR 212 >gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] Length = 224 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT + EG T+ EIA L ++ TV +I I+ K + R + A + Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 199 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L I++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 215 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 149 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 208 Query: 242 RNNI 245 + Sbjct: 209 ERGL 212 >gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 224 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT + EG T+ EIA L ++ TV +I I+ K + R + A + Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|311745088|ref|ZP_07718873.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] gi|126577601|gb|EAZ81821.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] Length = 269 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K LT +E + + I +G S EI +L IS NTV+ + +I+RK K Sbjct: 202 KTVSLTKKEKQIVKMILDGMKSKEIGQVLNISFNTVSTHRKNILRKLGAK 251 >gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 E + L W +EGKT+ E+A IL ++ VN +I + + K ++ A+ A Sbjct: 190 ERQTLHWTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAA 241 >gi|309775442|ref|ZP_07670445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308916831|gb|EFP62568.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 209 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++L RE+ + +++G + E+A L +S TV NY++S++ K + R+ + +N Sbjct: 145 YDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204 >gi|302547743|ref|ZP_07300085.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465361|gb|EFL28454.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 227 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L ++ G + EIA L IS TV ++ I K TR+GA+A A Sbjct: 166 LSERERDILQQLARGLGNREIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVA 220 >gi|256378000|ref|YP_003101660.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922303|gb|ACU37814.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 250 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE L ++EG T+D IA L IS TV+ ++ + RK T R Sbjct: 189 LTQRERTVLVVLAEGLTADAIARRLDISPRTVHRHLQHLYRKLGTTDR 236 >gi|269215500|ref|ZP_06159354.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122] gi|269130987|gb|EEZ62062.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122] Length = 484 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE E +T ++EG+ S I L I++NT ++ ++ RKT + IA+ Sbjct: 413 LSPREQEVMTLLAEGRDSPYIQSTLVIAQNTAKTHMRNVYRKTGVSNKQELIAF 466 >gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301] Length = 199 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +E+ L +++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEISVLKGVAQGLSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193 >gi|325832726|ref|ZP_08165489.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|325485865|gb|EGC88326.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 527 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ LT RE E L +++ G+T IA L ++ NTV +++ +I K TR Sbjct: 466 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTR 518 >gi|325270893|ref|ZP_08137480.1| transcriptional regulator [Prevotella multiformis DSM 16608] gi|324986690|gb|EGC18686.1| transcriptional regulator [Prevotella multiformis DSM 16608] Length = 246 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT E E L I+ G T+ EIA S +TVN + +I RK + A+ YA+R+ Sbjct: 178 KLTKTETEILKEIALGMTTREIAEKRFSSFHTVNTHRKNIFRKLGVNSVHEAMRYAMRSG 237 Query: 245 IV 246 +V Sbjct: 238 LV 239 >gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] Length = 232 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 216 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G + LT RE + L I+ G E+A L I+ TV +I ++ RK + + A+A A Sbjct: 151 GLEIRLTAREKDILRLIAHGFKRQEVADKLNITVGTVGTHINNVYRKLEVGSNTQAVATA 210 Query: 241 VR 242 R Sbjct: 211 NR 212 >gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 185 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 125 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 184 Query: 246 V 246 V Sbjct: 185 V 185 >gi|229193374|ref|ZP_04320323.1| Two-component response regulator ComA [Bacillus cereus ATCC 10876] gi|228590088|gb|EEK47958.1| Two-component response regulator ComA [Bacillus cereus ATCC 10876] Length = 213 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E L +S+G ++ +IA L +S V + I +K +RS A+ A+R I Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|225020543|ref|ZP_03709735.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii ATCC 33806] gi|305679908|ref|ZP_07402718.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224946673|gb|EEG27882.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii ATCC 33806] gi|305660528|gb|EFM50025.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 232 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE+E L ++ G T EIA L IS TV + ++I+RKT R Sbjct: 172 LTRRELEVLRLLARGYTYKEIAGQLFISIKTVETHASNILRKTQQSNR 219 >gi|315604390|ref|ZP_07879456.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315314096|gb|EFU62147.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 218 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A Sbjct: 147 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 206 Query: 239 Y 239 + Sbjct: 207 W 207 >gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 221 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++G ++ EIA + ++ TV ++ I+ K + R A+ A + Sbjct: 156 QLTDREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESG 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 253 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L ++ G ++ EI+ +S TV ++ ++ KT ++ R A+ YA + Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240 Query: 245 IV 246 +V Sbjct: 241 VV 242 >gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 158 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 217 Query: 242 RNNI 245 + Sbjct: 218 ERGL 221 >gi|209517666|ref|ZP_03266503.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209501841|gb|EEA01860.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 210 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ G++ +EIA +S T++ + +M+K + I YA+R+ + Sbjct: 148 LSDREFQVLQMLAAGRSINEIAQACSLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGM 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 202 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L I GK++ EIA L I TV ++ ++ RK K R+ A A Sbjct: 142 LTPRETDVLVGILHGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTHAAMIA 196 >gi|146338352|ref|YP_001203400.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191158|emb|CAL75163.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. ORS278] Length = 269 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT +++ L ++ G T+ +IA+ GIS NTV +A++ R R+ +A RN Sbjct: 206 KLTRSQLDILGHLAIGATNRDIAIARGISINTVKTQVAALTRTLKFSNRTQTALFAARNG 265 >gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 207 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT +E + L + EG T+ +IA + ++ TV NY++ ++ K + R+ A A R Sbjct: 146 DLTEQERKLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVLATR 203 >gi|302038390|ref|YP_003798712.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300606454|emb|CBK42787.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 215 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I+ G+T +IA + +S T++ Y A I+ K K + YA+++ + Sbjct: 154 LSDREYEVLCLIASGQTVSDIAESIHLSVTTISTYRARILDKMNLKNNAELTRYALQHGL 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|28871951|ref|NP_794570.1| DNA binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|301383654|ref|ZP_07232072.1| DNA binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302063177|ref|ZP_07254718.1| DNA binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302131267|ref|ZP_07257257.1| DNA binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855204|gb|AAO58265.1| DNA binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|331014726|gb|EGH94782.1| DNA binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 260 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 189 KLSRRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245 >gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 211 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + Y +S + L +++ + +++G T+ EIA + +S TV Y+A Sbjct: 130 VVGYLMQQMRSPSADKEERIPLNRQQLAIIRLVAQGYTNREIAERMFLSEKTVKGYLAEA 189 Query: 225 MRKTATKTRSGAIAYAVRNN 244 MR+ K R A A +N Sbjct: 190 MRRMGVKNRVEAAMVASKNG 209 >gi|119025065|ref|YP_908910.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764649|dbj|BAF38828.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 221 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + ++ ++G EIA L IS +TV ++ I++K KT A+A VR++ Sbjct: 161 LTVREEQIISLCADGMLDREIAERLDISESTVRKHMQGILKKLNCKTARQAVALWVRSH 219 >gi|319440533|ref|ZP_07989689.1| putative transcription regulator [Corynebacterium variabile DSM 44702] Length = 146 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT REVE + ++ G T E+A L IS TV +++ ++RKT R Sbjct: 85 DLTPREVEVMRLLARGYTYREMAKRLFISVKTVETHVSHVLRKTQQTNR 133 >gi|302560214|ref|ZP_07312556.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477832|gb|EFL40925.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 231 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 164 LTPREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 211 >gi|256378341|ref|YP_003102001.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922644|gb|ACU38155.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 261 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT RE L +++G T D IA L IS TV+ + + RK T+T Sbjct: 193 YRLTRREATVLEGVAQGLTDDTIADRLAISPRTVHRRLRHVSRKLGTET 241 >gi|311234756|gb|ADP87610.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris RCH1] Length = 250 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++EG + EIA +L +S TV + A+ M K + + A+A R + Sbjct: 179 LTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 238 >gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 219 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE E + G + EIA L +S TV Y A + K K+R+ ++YA + Sbjct: 155 ELSEREAEVARLTAAGHGNKEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQG 214 >gi|167906527|ref|ZP_02493732.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] Length = 255 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 SY + +D ELT RE + L +++ K + +IA ILG+S T+ Y+ ++ K + ++ Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKMAKDIANILGLSARTIEQYMENLRCKFSASSK 201 Query: 234 SGAIAYAV 241 + I A Sbjct: 202 NELIDLAA 209 >gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes HL097PA1] gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes 266] Length = 224 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT + EG T+ EIA L ++ TV +I I+ K + R + A + Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|318057452|ref|ZP_07976175.1| response regulator receiver [Streptomyces sp. SA3_actG] Length = 151 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + GR+++ L +++EG T++EIA LG+ +TV + + + R+ A+A Sbjct: 81 VAGRQLQVLRFLAEGLTAEEIAAQLGLKPSTVIEHCTRLYATLGARHRAHAVA 133 >gi|284029107|ref|YP_003379038.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808400|gb|ADB30239.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 216 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L + G +++EI L +S T Y++ ++ K + RS + A + + Sbjct: 155 LTARELDILAHVGRGLSNEEIGQALFLSPETARTYVSRLLAKLGVRDRSQLVVLAHKAGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|213968029|ref|ZP_03396175.1| DNA binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|213927372|gb|EEB60921.1| DNA binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 264 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240 +L+ R+++ +S G T+ +IA LGI+ NTV Y++ ++R T R+ A+A++ Sbjct: 193 KLSRRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 249 >gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 215 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 149 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 208 Query: 242 RNNI 245 + Sbjct: 209 ERGL 212 >gi|170692985|ref|ZP_02884146.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170141983|gb|EDT10150.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 210 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +F++Y L+ RE + L ++ GK+ ++IA +S T++ + +M+K Sbjct: 134 VFETYSGDAPPHEILSDREFQVLQMLALGKSLNDIADAFALSAKTISTHKMRLMQKLGLA 193 Query: 232 TRSGAIAYAVRNNIV 246 + I YA+R+ +V Sbjct: 194 NNAELIRYAIRHGLV 208 >gi|27376291|ref|NP_767820.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|8708916|gb|AAF78807.1| two-component system transcriptional regulator ElmR [Bradyrhizobium japonicum] gi|27349431|dbj|BAC46445.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 214 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 33/73 (45%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +A F + ++T RE+E L + G E+A LGIS TV N + + +K Sbjct: 137 EAVTFSGAAIKANPASQMTPRELEILRLLGRGDKIVEVAEALGISYKTVANTTSLLKQKL 196 Query: 229 ATKTRSGAIAYAV 241 K S I AV Sbjct: 197 GAKNHSDLIRIAV 209 >gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 214 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +EG + EIA LG+S + + +I +K K+ + YAVR + Sbjct: 151 LTKREREVLKLTAEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQLATYAVRIGL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|311897240|dbj|BAJ29648.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 200 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 28/58 (48%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D LT RE + L ++G EIA +S TV NY++S K + R A+ A Sbjct: 137 DSPLTPRETDVLELAADGSPVAEIAERAALSPGTVRNYLSSAAGKLGAENRHAAVRIA 194 >gi|306836360|ref|ZP_07469338.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304567720|gb|EFM43307.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 253 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L ++ G ++ EI+ +S TV ++ ++ KT ++ R A+ YA + Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240 Query: 245 IV 246 +V Sbjct: 241 VV 242 >gi|227505091|ref|ZP_03935140.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198294|gb|EEI78342.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 218 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +T RE+E L I+ G T+ EIA L ++ TV +++S+M K + R Sbjct: 158 VTRRELEVLRLITSGATNREIAQELVLAETTVKTHVSSLMSKLQARDR 205 >gi|149907604|ref|ZP_01896351.1| transcriptional regulator, LuxR family [Moritella sp. PE36] gi|149809274|gb|EDM69203.1| transcriptional regulator, LuxR family [Moritella sp. PE36] Length = 197 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ R++ L +++GK++ ++A L IS TV + SIM+ KT + I YA+ + Sbjct: 135 KLSSRQISVLQLLAQGKSARQVADELFISPRTVEFHKYSIMKLVNAKTSAELIQYALNHG 194 Query: 245 IV 246 ++ Sbjct: 195 LM 196 >gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 520 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 175 SYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + D+H +D LT RE+E L ++ G ++ E+A L ++ TV ++A ++ K + R Sbjct: 438 TADLH--RDLASLTPRELEVLGLLARGLSNAELAARLHLAETTVKTHVARVLAKLGLRDR 495 Query: 234 SGAIAYAVRNNIV 246 A+ A +V Sbjct: 496 VQAVIVAYETGLV 508 >gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] Length = 451 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +ELT RE+E L +++G IA L +S TV NY ++ K + A+ A+ Sbjct: 388 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEI 447 Query: 244 NIV 246 I+ Sbjct: 448 GII 450 >gi|83952011|ref|ZP_00960743.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] gi|83837017|gb|EAP76314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] Length = 252 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R+ E L W+ +GKT +IA++L ++ TV ++ + +T + A+ A N Sbjct: 186 LTARQREVLGWVGDGKTVQDIALLLNLTPATVEKHLRLARDALSVETTAQAVLKASFQNQ 245 Query: 246 V 246 + Sbjct: 246 I 246 >gi|116618242|ref|YP_818613.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097089|gb|ABJ62240.1| DNA-binding response regulator (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 210 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +D+ L+ +E++ L+ ++ G IA+ + +S T+ + + I K T A+A AV Sbjct: 143 QDYNLSEKELKILSRVARGVKIKLIALEMHLSERTIKSNLTDIYIKMNVSTGVQAVALAV 202 Query: 242 RNNIV 246 +NN++ Sbjct: 203 KNNLI 207 >gi|302527637|ref|ZP_07279979.1| predicted protein [Streptomyces sp. AA4] gi|302436532|gb|EFL08348.1| predicted protein [Streptomyces sp. AA4] Length = 316 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE++ + +S G +++ I+ LGI+ TV +++ S + K R+ +A+ +++ Sbjct: 246 LTGRELDVVGLVSRGWSNERISSALGITVRTVRSHVESSLVKLDCPNRTALARHALEHDL 305 >gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 201 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TA 229 M ++D G D LT RE + L EG ++ +IA LG+S TV NY+++ K A Sbjct: 130 MAAAWDA--GAD-PLTARERDALRLAEEGLSNKDIARRLGLSPGTVRNYLSTAAGKLNAA 186 Query: 230 TKTRSGAIAYA 240 + +G IA A Sbjct: 187 NRIEAGRIARA 197 >gi|119511948|ref|ZP_01631045.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463368|gb|EAW44308.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 69 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I+ G + EI+ L IS TV N++ +I+ + + R+ A A Sbjct: 3 ELTPREKEVLRLIAVGANNREISQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 58 >gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal transduction system [Streptomyces lividans] Length = 225 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D + LT RE+E L +++G ++ E+A L +S TV ++ I+ K + R A+ A Sbjct: 154 RDLQTLTPRELEVLQLLAQGLSNAELAERLYLSETTVKTHVGRILAKLQLRDRVQAVVTA 213 Query: 241 VRNNIV 246 +V Sbjct: 214 YETGLV 219 >gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707] gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus equi 103S] gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707] Length = 212 Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I+ G + I+ L +S TV N++++++ K RS AI A Sbjct: 150 ELTEREHEVLDLIARGHDNATISRRLVLSPKTVRNHVSNVLTKLGVPDRSTAIVRA 205 >gi|293400727|ref|ZP_06644872.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305753|gb|EFE46997.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 205 Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 31/51 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ++L RE + ++ ++ G + EIA L +S TV NY+++++ K + R+ Sbjct: 144 YDLNDREQQFISLVANGLNNKEIAETLFLSEGTVRNYLSNLLDKLGLRDRT 194 >gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] Length = 934 Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++ + +I L IS +TV +++ + +K R AIA A+R Sbjct: 866 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKAMRVG 925 Query: 245 IV 246 ++ Sbjct: 926 LL 927 >gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] Length = 224 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT + EG T+ EIA L ++ TV +I I+ K + R + A + Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|218233335|ref|YP_002369918.1| competence protein A [Bacillus cereus B4264] gi|228961368|ref|ZP_04122983.1| Two-component response regulator ComA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153297|ref|ZP_04281475.1| Two-component response regulator ComA [Bacillus cereus m1550] gi|218161292|gb|ACK61284.1| competence protein A [Bacillus cereus B4264] gi|228629901|gb|EEK86552.1| Two-component response regulator ComA [Bacillus cereus m1550] gi|228798326|gb|EEM45324.1| Two-component response regulator ComA [Bacillus thuringiensis serovar pakistani str. T13001] Length = 213 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E L +S+G ++ +IA L +S V + I +K +RS A+ A+R I Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|153006198|ref|YP_001380523.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029771|gb|ABS27539.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 232 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + I EG ++E A LGI+ TV N++ I K R + +A + + Sbjct: 168 LTPREREIVALIGEGLRNEEAARRLGITEKTVRNHLTLIFDKVGVSGRLELLVWAYEHGL 227 Query: 246 V 246 V Sbjct: 228 V 228 >gi|329768816|ref|ZP_08260247.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325] gi|328839589|gb|EGF89164.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325] Length = 199 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ +E L + EG ++ EI+ L +S T+ NYI++I+ K K R+ A+ A Sbjct: 139 LSNQEKILLAKVKEGLSNKEISSELYLSEGTIRNYISNILTKLNCKNRTEAVKKA 193 >gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 199 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT +EV L +++G ++ EIA L +S TV NY+ +I+ K R+ A A Sbjct: 139 LTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLNASNRTEAAKTA 193 >gi|302542997|ref|ZP_07295339.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460615|gb|EFL23708.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 231 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT REVE L ++EG+ + IA +GI+ +T ++ ++ K +R Sbjct: 156 LTPREVEVLMRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203 >gi|227494681|ref|ZP_03924997.1| response regulator DegU family protein [Actinomyces coleocanis DSM 15436] gi|226831863|gb|EEH64246.1| response regulator DegU family protein [Actinomyces coleocanis DSM 15436] Length = 216 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A Sbjct: 145 HGDPTADLTPAERKVLNLIGDGLSNREIGEKLGVAEKTVKNHITSLLAKMGLQRRTQVAA 204 Query: 239 Y 239 + Sbjct: 205 W 205 >gi|317475733|ref|ZP_07934992.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316908116|gb|EFV29811.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 70 Score = 35.0 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE + L +++G + EIA +LGIS NTV + ++ K K + AV Sbjct: 8 TKREQDVLQAVAKGLNTHEIAHLLGISENTVETFRKKLLSKFGAKNAIDLVVKAV 62 >gi|319795895|ref|YP_004157535.1| ATP-dependent transcriptional regulator malt-like, luxr family [Variovorax paradoxus EPS] gi|315598358|gb|ADU39424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Variovorax paradoxus EPS] Length = 914 Score = 35.0 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+ L ++EG +++ +A L +S +TV ++ +I K K+R+ A+A A + + Sbjct: 853 LTRKEIRVLQLLAEGYSNNAMAEKLFVSDSTVRTHLRNINMKLDAKSRTQAVAIARKVGV 912 Query: 246 V 246 + Sbjct: 913 I 913 >gi|300698157|ref|YP_003748818.1| nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum CFBP2957] gi|299074881|emb|CBJ54450.1| Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum CFBP2957] Length = 217 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + + + G ++ EIA L ++ +TV ++ +I++K +R YAV N + Sbjct: 155 LTSRERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214 >gi|288958558|ref|YP_003448899.1| two-component response regulator [Azospirillum sp. B510] gi|288910866|dbj|BAI72355.1| two-component response regulator [Azospirillum sp. B510] Length = 213 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT R+ E L + GK++ +IA LG+S TV ++ +I + K R+ Sbjct: 152 YGLTQRQREVLECLRLGKSNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRT 202 >gi|269128746|ref|YP_003302116.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313704|gb|ACZ00079.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE + L + +G ++ EIA L + TV Y+++I+++ + R A A + Sbjct: 158 LTGRERDVLGLLGQGLSNAEIAARLHLVEGTVKGYVSTILQRLNVENRVQAAILAYEAGL 217 Query: 246 V 246 V Sbjct: 218 V 218 >gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 228 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 164 LLAAYQ----ANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 +L+A+Q A M S +H + L+ RE E + I+ G T E+A L IS TV Sbjct: 140 VLSAFQNGSPAGMGGSASGPIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTV 199 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++S++RK R+ +A IV Sbjct: 200 ETHVSSVLRKLQLSNRTELTRWAADRRIV 228 >gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229] Length = 264 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + EIA +L IS TV+ + +M+K + + I +A R Sbjct: 196 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYR 253 >gi|317488846|ref|ZP_07947376.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316911920|gb|EFV33499.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 503 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ LT RE E L +++ G+T IA L ++ NTV +++ +I K TR Sbjct: 442 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTR 494 >gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces albus J1074] Length = 211 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG ++ I+ L +S+ TV +++ I K +R+ A+A A+ + Sbjct: 149 LSRRETEVLGLVAEGMSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] Length = 207 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 L+ +E+E L ++ G + EIA LGIS TV ++ SI K K R+ A Sbjct: 147 LSPKELEVLRCLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQA 197 >gi|242280780|ref|YP_002992909.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123674|gb|ACS81370.1| transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 405 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 181 GKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 G FE LT REVE +I GK+++ I +L I+ +TV + +I RK + + Sbjct: 334 GDQFEELLLKLTPREVEICRYIEAGKSTERIGELLSITADTVRTHRKNIRRKLGLQGKRV 393 Query: 236 AIAYAVRNNI 245 ++ +++ I Sbjct: 394 SLISYLKHQI 403 >gi|331694595|ref|YP_004330834.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|331696119|ref|YP_004332358.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949284|gb|AEA22981.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] gi|326950808|gb|AEA24505.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 214 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 178 VHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G+D E L+ +E L +++G T+ +I L ++ TV NY++S++ K Sbjct: 139 LRRGEDTEDPRYAGLSPQERRILDLVADGLTNKQIGAELFLAEKTVKNYVSSLLHKLGFS 198 Query: 232 TRSGAIAYAVR 242 R+ A YA R Sbjct: 199 RRTEAAVYAER 209 >gi|260599500|ref|YP_003212071.1| transcriptional regulatory protein entR [Cronobacter turicensis z3032] gi|260218677|emb|CBA34025.1| Transcriptional regulatory protein entR [Cronobacter turicensis z3032] Length = 201 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE L W SEG +++EIA +GI+ TV Y +I K R Sbjct: 141 LTLREERILEWWSEGMSNEEIARKMGIAVKTVYTYKRNIRMKLGADNR 188 >gi|253998833|ref|YP_003050896.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200921|ref|YP_004039579.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985512|gb|ACT50369.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312440237|gb|ADQ84343.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 210 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + ++ G ++ EIA L IS TV+ Y I+ K + KT + YA++N + Sbjct: 149 LSDREFQVFFKLAGGLSATEIADELCISVKTVSTYRTRILEKMSLKTNADLTYYAIKNGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 233 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 167 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 226 Query: 242 RNNI 245 + Sbjct: 227 ERGL 230 >gi|256374257|ref|YP_003097917.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918560|gb|ACU34071.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E L+ I EG ++ +IA L ++ TV N++ +++ K + R+ A A+ R Sbjct: 150 LTEQERRVLSLIGEGLSNRQIAERLFVAEKTVKNHVTAVLSKLGMERRTQAAAWVARRG 208 >gi|170747693|ref|YP_001753953.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654215|gb|ACB23270.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 220 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + +G + +IA LGIS TV + ++MR K +G++A VR Sbjct: 157 LTAREAEVMAHVVKGLLNKQIAYALGISEITVKIHRGNVMR----KMEAGSVADLVRKT 211 >gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+ L ++ G ++ +I L IS T ++ +IMRK TR+ A+ A + Sbjct: 154 ELTERELGVLRLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRG 213 Query: 245 IV 246 ++ Sbjct: 214 LI 215 >gi|261254003|ref|ZP_05946576.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP 102891] gi|260937394|gb|EEX93383.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP 102891] Length = 215 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + G ++ +IA + IS TV +++ I +K + K R A A+A ++ Sbjct: 154 DLTTREIQILRCLMVGSSNIQIAEDMFISEFTVKSHLQKIFKKLSVKNRVQAAAWAKQH 212 >gi|189461600|ref|ZP_03010385.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136] gi|189431710|gb|EDV00695.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136] Length = 202 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+D L+ RE E + + G T+ EIA L IS +TV + +I RK + +G YA Sbjct: 129 GQD-TLSQREKEIIGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGLTIYA 187 Query: 241 VRNNIV 246 + N +V Sbjct: 188 IVNKLV 193 >gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 213 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE L +EG ++ EIA L IS T + +++RK +T++ + +A+R + Sbjct: 151 ITPRERMVLQLAAEGASNSEIAEKLFISPRTAETHRTNLLRKLGLQTQTDLVRFAIRKGL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|320532105|ref|ZP_08032984.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135680|gb|EFW27749.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 226 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E + ++EG + E A L +S TV N+I++I+ K + R+ Sbjct: 165 LTDREYEVVEAVAEGLDNAEAAARLFVSEGTVRNHISAILAKLGLRNRT 213 >gi|284044784|ref|YP_003395124.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949005|gb|ADB51749.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 429 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L RE+E L ++ G + +IA L I+ +TV ++A+I+RK +R Sbjct: 370 LNARELEVLAELARGGRNRQIAEALAITPHTVKFHVANILRKLGVSSRG 418 >gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 213 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + EG ++ I+ L +S+ TV +++ I K +R+ A+A A + Sbjct: 151 LTRRELEVLQLVGEGLSNLRISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 210 Query: 246 V 246 + Sbjct: 211 I 211 >gi|170749677|ref|YP_001755937.1| response regulator FixJ [Methylobacterium radiotolerans JCM 2831] gi|170656199|gb|ACB25254.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 205 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE + L + GK + I + LGIS TV Y A++M +K ++G+++ VR Sbjct: 141 ELTERERQVLEGLVAGKANKVIGLDLGISPRTVEIYRANVM----SKLQAGSLSELVRMA 196 Query: 245 IV 246 ++ Sbjct: 197 LI 198 >gi|154493926|ref|ZP_02033246.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC 43184] gi|154086186|gb|EDN85231.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC 43184] Length = 202 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + +G T+ EIA L +S +TV + +I RK + SG YA+ N + Sbjct: 135 LSSREKEIVICVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASGLTVYAIVNKL 194 Query: 246 V 246 + Sbjct: 195 I 195 >gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] Length = 210 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E + + G T+ EIA L IS TV +++ I K +RS +A A + + Sbjct: 149 LTARELEVVVLLDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVTSRSKVVATARQRGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 224 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E +T ++ G ++DEIA L IS T ++ M K + R+ + A + Sbjct: 156 QLTPRELEVVTLVAMGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCG 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|115358524|ref|YP_775662.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170703717|ref|ZP_02894440.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|171323018|ref|ZP_02911678.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|172063277|ref|YP_001810928.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283812|gb|ABI89328.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|170131372|gb|EDS99976.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|171091598|gb|EDT37191.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171995794|gb|ACB66712.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 215 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|255971090|ref|ZP_05421676.1| predicted protein [Enterococcus faecalis T1] gi|255962108|gb|EET94584.1| predicted protein [Enterococcus faecalis T1] Length = 202 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L +S+G IA + I+ T+ NY+ SI K T + ++ A+ I Sbjct: 137 ITPREKEVLRILSQGVKQSAIASKMNITERTLRNYVYSINEKLGTNSAIASVVKAIELGI 196 Query: 246 V 246 + Sbjct: 197 I 197 >gi|239995139|ref|ZP_04715663.1| putative LuxR-family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 198 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L+ I +G ++ EIA GI+ TV Y+ +++ K K R Sbjct: 134 LTNREKDVLSGILDGLSNKEIAREHGITERTVKEYVGTLLHKFEAKDR 181 >gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ RE E + ++ G EIA LGI TV Y+ +I K K R+ A+A Sbjct: 152 KLSPREGEVIELLASGYIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVA 205 >gi|187920901|ref|YP_001889933.1| two component LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719339|gb|ACD20562.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 210 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ G++ +EIA +S T++ + +M+K + I YAVR+ + Sbjct: 148 LSDREFQVLQMLAAGQSINEIAESCSLSAKTISTHKMRLMQKLGLNNNAELIRYAVRHGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] Length = 225 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 181 GKDFELTGR-EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 GK EL R E + + + G ++ EIA L +S TV NY+++I+ K + R+ + Sbjct: 151 GKTLELLSRTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYLSTILSKLELRDRTQLAIW 210 Query: 240 AVRNNIV 246 A ++ I+ Sbjct: 211 ATQSGIL 217 >gi|291614280|ref|YP_003524437.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584392|gb|ADE12050.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 219 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG+ + IA L +S TV + +++MRK + +YA+ + Sbjct: 156 LTLREREVLKLIAEGQGNKHIASYLCVSVKTVEKHRSNLMRKLNLHNAAVLTSYAIEKGM 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|228910956|ref|ZP_04074764.1| Two-component response regulator ComA [Bacillus thuringiensis IBL 200] gi|228848611|gb|EEM93457.1| Two-component response regulator ComA [Bacillus thuringiensis IBL 200] Length = 213 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E L +S+G ++ +IA L +S V + I +K +RS A+ A+R I Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E +T ++ G ++DEIA L IS T ++ M K + R+ + A + Sbjct: 156 QLTPRELEVVTLVALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCG 215 Query: 245 IV 246 +V Sbjct: 216 VV 217 >gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] Length = 212 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + G +S E+A L IS TV ++AS+ K ++ A+ A+++ + Sbjct: 145 LSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALKHGL 204 Query: 246 V 246 + Sbjct: 205 M 205 >gi|228942278|ref|ZP_04104817.1| Two-component response regulator ComA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975207|ref|ZP_04135765.1| Two-component response regulator ComA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981845|ref|ZP_04142140.1| Two-component response regulator ComA [Bacillus thuringiensis Bt407] gi|228777957|gb|EEM26229.1| Two-component response regulator ComA [Bacillus thuringiensis Bt407] gi|228784486|gb|EEM32507.1| Two-component response regulator ComA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817322|gb|EEM63408.1| Two-component response regulator ComA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942934|gb|AEA18830.1| two-component response regulator comA [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E L +S+G ++ +IA L +S V + I +K +RS A+ A+R I Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|167646930|ref|YP_001684593.1| two component LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167349360|gb|ABZ72095.1| two component transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 207 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LTGRE + L +++G + IA LGIS TV + A++M K ++ S A+ A Sbjct: 143 LTGREQDVLKGLAQGLPNKTIAYDLGISPRTVEVHRANLMSKLKVRSLSEALRIA 197 >gi|325068498|ref|ZP_08127171.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 205 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A+ Sbjct: 139 DLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 193 >gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] Length = 205 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE+E L ++ G ++ E+A L IS TV ++ I +K TR+ A+ A Sbjct: 145 LSTRELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVA 199 >gi|288802576|ref|ZP_06408015.1| transcriptional regulator [Prevotella melaninogenica D18] gi|288335104|gb|EFC73540.1| transcriptional regulator [Prevotella melaninogenica D18] Length = 214 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E E L I+ G T+ EIA S +TVN + +I RK AI YA+R+ + Sbjct: 147 LTKTETEILKEIALGATTREIADKRFSSFHTVNTHRKNIFRKLGVNNVHEAIRYAMRSGL 206 Query: 246 V 246 V Sbjct: 207 V 207 >gi|257415200|ref|ZP_05592194.1| salavaricin two-component system response regulator [Enterococcus faecalis AR01/DG] gi|257157028|gb|EEU86988.1| salavaricin two-component system response regulator [Enterococcus faecalis ARO1/DG] Length = 202 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L +S+G IA + I+ T+ NY+ SI K T + ++ A+ I Sbjct: 137 ITPREKEVLRILSQGVKQSAIASKMNITERTLRNYVYSINEKLGTNSAIASVVKAIELGI 196 Query: 246 V 246 + Sbjct: 197 I 197 >gi|258654854|ref|YP_003204010.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558079|gb|ACV81021.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 209 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +T RE++ L +++G ++ EIA L +S +TV + + RK R+ A+A +R Sbjct: 146 LAVTDRELQILRGMTDGFSNLEIAKQLFVSEDTVKTHARRLFRKLGANDRAHAVALGMRF 205 Query: 244 NIV 246 +V Sbjct: 206 ELV 208 >gi|254430257|ref|ZP_05043960.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197624710|gb|EDY37269.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 291 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L ++ G ++ EIA L +S +TV ++ +++RK + R+ A V Sbjct: 226 LTPRELEVLAQVARGCSNVEIAGSLYLSVDTVKTHLQNVLRKLPARDRAHAAVLGV 281 >gi|73541229|ref|YP_295749.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118642|gb|AAZ60905.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 394 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 F+LT E + ++ G T DE A LGIS+NT ++ +I KT Sbjct: 330 FDLTPAETQLALQLANGLTLDEAADELGISKNTARAHLRAIFSKTG 375 >gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A] gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 231 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|325068150|ref|ZP_08126823.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Actinomyces oris K20] Length = 226 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT RE E + ++EG + E A L +S TV N+I++I+ K + R+ Sbjct: 165 LTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRT 213 >gi|320093927|ref|ZP_08025762.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979139|gb|EFW10647.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 215 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A Sbjct: 144 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 203 Query: 239 Y 239 + Sbjct: 204 W 204 >gi|301383778|ref|ZP_07232196.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] Length = 104 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+ L ++ GKT+ EIA + +S TV+ Y ++ K + I A RN + Sbjct: 44 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 103 Query: 246 V 246 V Sbjct: 104 V 104 >gi|239942915|ref|ZP_04694852.1| erythropoiesis-stimulating protein [Streptomyces roseosporus NRRL 15998] gi|239989375|ref|ZP_04710039.1| erythropoiesis-stimulating protein [Streptomyces roseosporus NRRL 11379] Length = 331 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G D+ TGR E + +S G T + +A LG+S TV ++ + + +R A Sbjct: 261 VEPGDDWRPTGRHRELVRMLSGGLTDEAMARKLGLSERTVRRLVSELTERLGAASRFQAG 320 Query: 238 AYAVR 242 AVR Sbjct: 321 VCAVR 325 >gi|189461728|ref|ZP_03010513.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136] gi|189431488|gb|EDV00473.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136] Length = 215 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT E E L ++ GKT+ EIA +S TV + +I RK AI YA+R Sbjct: 147 QLTMTEKEVLRSLTLGKTTKEIAAERFLSVYTVMTHRKNIFRKLNVNNAQEAIRYALRAG 206 Query: 245 IV 246 IV Sbjct: 207 IV 208 >gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 234 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 168 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 227 Query: 242 RNNI 245 + Sbjct: 228 ERGL 231 >gi|167584244|ref|ZP_02376632.1| two component transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 215 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + I+ G+T EIA L +S TV+ Y I+ K + + YA+R+ + Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|91790738|ref|YP_551689.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91700618|gb|ABE46791.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 231 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT ++V+ L G ++ E A LG++ TVN ++A+I K T+ + +I+ A+ Sbjct: 171 LTAQQVKVLNLSLHGLSARECAASLGVTERTVNFHLATIQEKFGTQNKQESISKAI 226 >gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 231 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|320106198|ref|YP_004181788.1| LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924719|gb|ADV81794.1| transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 219 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE++ + +I +G + EIA+ +G V NY+ SI KT R Sbjct: 142 LTPRELQIVGFIVQGCKNKEIALQIGTKEQVVKNYLRSIYDKTGVSDR 189 >gi|306407932|dbj|BAJ16474.1| regulatory protein [Streptomyces graminofaciens] Length = 243 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ +E E +T ++ G + EIAV + ++ TV NY++ I K ++RS A+ Sbjct: 174 PSLALSPQEREIMTRLASGLSVREIAVEMRLAEKTVRNYLSHIYGKLGVRSRSQAL 229 >gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149] gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149] Length = 221 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++G ++ EIA + ++ TV ++ I+ K + R A+ A + Sbjct: 156 QLTEREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLAYESG 215 Query: 245 IV 246 +V Sbjct: 216 LV 217 >gi|329767671|ref|ZP_08259190.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341] gi|328839021|gb|EGF88609.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341] Length = 199 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ +E L I EG ++ EIA L +S T+ NYI++I+ K K R+ A+ Sbjct: 139 LSNQEKIILLKIKEGLSNKEIANELFLSEGTIRNYISNILTKLNCKNRTEAV 190 >gi|294012984|ref|YP_003546444.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676314|dbj|BAI97832.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +T R+ +C+ W + GK+ E + IL ISR TV ++I Sbjct: 173 ITDRQRDCVQWAARGKSDWETSQILDISRETVTSHI 208 >gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 203 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 25/48 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L EGK S +IA L +S TV NY++ + K R Sbjct: 143 LTERERQILWRAGEGKASQDIAAELHLSEGTVRNYLSEAISKLGAANR 190 >gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] Length = 228 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 168 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 227 Query: 246 V 246 V Sbjct: 228 V 228 >gi|326331580|ref|ZP_08197870.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950836|gb|EGD42886.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 297 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE++ L ++ G ++ E A LGI +TV +Y+ S RK R A+ A + Sbjct: 236 LAAREIDVLRQVALGNSNREAAEALGIVESTVKSYLKSATRKLNANNRVHAVRMAREAGL 295 Query: 246 V 246 + Sbjct: 296 I 296 >gi|227540406|ref|ZP_03970455.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239730|gb|EEI89745.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 117 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 156 RDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ++ +I L+ Y F + D KD + + REV+ + I+EG +++EIA L I+ Sbjct: 25 KENTNKISLIGLYGEPSFIHLNVDTQEKKDTKFSKREVDIIKLIAEGLSNNEIAEKLFIA 84 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV + +I+ K K + I +V ++ Sbjct: 85 SVTVKKHRQNILLKAGCKNTAQLIKNSVLQGLI 117 >gi|225166130|ref|ZP_03727857.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224799629|gb|EEG18131.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 214 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L G ++E+A G++ TV N+ +IM K + + YA+ N Sbjct: 147 LTDREIEALRLFGLGLGNEEVAGRFGVNPLTVRNHRRAIMTKLGIHSTPELVRYAIENG 205 >gi|10954690|ref|NP_066625.1| hypothetical protein pRi1724_p045 [Agrobacterium rhizogenes] gi|8918690|dbj|BAA97755.1| riorf44 [Agrobacterium rhizogenes] gi|10567354|dbj|BAB16163.1| riorf44 [Agrobacterium rhizogenes] Length = 67 Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 190 EVECLTWISEGKTSDEIAVILGISRNTV 217 E+ CL WI+ GK+ D+IA++ GI+R V Sbjct: 11 EIVCLQWIAHGKSIDDIALLEGITRELV 38 >gi|330822044|ref|YP_004350906.1| DNA-binding response regulator, LuxR family protein [Burkholderia gladioli BSR3] gi|327374039|gb|AEA65394.1| DNA-binding response regulator, LuxR family protein [Burkholderia gladioli BSR3] Length = 215 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE++ L ++EG +S +IA+ G+S TV + ++ RK + ++ I +AV + Sbjct: 155 LTPRELDILDALAEGLSSKQIALQNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 212 >gi|311897623|dbj|BAJ30031.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 331 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 13/122 (10%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRII----LRDRLWEIGLLAAYQANMFKSYDVHWGK 182 D + L D R G ++L G + L + +W+ N DV + Sbjct: 213 DRQQAVLPIDTEDARAGAVVLRGAGTVAALCALFESVWD---------NAIPVGDVPKCE 263 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +E+ L +S+G T + IA +G+S T + A++M + ++R A +AV+ Sbjct: 264 ADGMPPQELAVLKMLSQGYTDEAIAKRMGVSPRTARRFAANLMERLDARSRFEAGVHAVQ 323 Query: 243 NN 244 + Sbjct: 324 DG 325 >gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 231 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|74317308|ref|YP_315048.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056803|gb|AAZ97243.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 209 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + + I++G++ ++IA L +S T++ Y A M+K + + YA+ ++ Sbjct: 148 QLSDREFQIVRLIAQGESLNQIADKLSLSAKTISTYKARSMQKLGISNHTELVRYAIAHH 207 >gi|114047794|ref|YP_738344.1| transcriptional regulator NarL [Shewanella sp. MR-7] gi|113889236|gb|ABI43287.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 221 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 7/96 (7%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209 G+I+L D + A A + +D E LT RE + + +S+G ++ IA Sbjct: 131 GKIVLSDAI------APILATGLRHNPPATKRDIESLTAREKDIIRLVSQGLSNKMIARK 184 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L I+ TV ++ ++++K + K+R A + ++ NI Sbjct: 185 LIITEGTVKVHVKNLLKKLSFKSRVEATVWILQENI 220 >gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 232 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 D ELT RE+E L ++ G ++ I L IS T ++ +I+RK R+ A+ Sbjct: 169 DSELTSRELEVLELLAHGLSNRAIGHRLYISDTTAKFHVGNILRKLGVSRRAEAV 223 >gi|159036018|ref|YP_001535271.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914853|gb|ABV96280.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 202 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE L +++G + EIA L S TV + + I R+ + R+ A+AY +R Sbjct: 139 DPRLSERERAVLRLVADGHETGEIAKQLCYSSRTVTSVVHDITRRFRLRNRAHAVAYTLR 198 Query: 243 NNIV 246 ++ Sbjct: 199 AGLL 202 >gi|39995364|ref|NP_951315.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982126|gb|AAR33588.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] Length = 215 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + EGK S EIA IL +S ++ Y + +M K + +A+ + + Sbjct: 152 LSQREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITNIPSLVKFALLHGV 211 >gi|27380799|ref|NP_772328.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27353964|dbj|BAC50953.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +L RE+E L + G T+++IA L +S TV NY I KT +T Sbjct: 154 QLGEREIEILRQFAGGATTEQIATHLNLSVKTVQNYHYLIKTKTGART 201 >gi|326773634|ref|ZP_08232917.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus C505] gi|326636864|gb|EGE37767.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus C505] Length = 217 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT E + L I +G ++ EI LG++ TV N+I S++ K + R+ A+ Sbjct: 151 DLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 205 >gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 214 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L I +G T+ EIA L ++ +TV ++ ++ K + R A+ VR+ Sbjct: 157 LSDREREVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMGVRH 214 >gi|300788042|ref|YP_003768333.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797556|gb|ADJ47931.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L ++ G+T+ EI L I+ +TV +IAS+M K + R Sbjct: 155 LTDREEQVLLSVARGRTNREITEELYITLSTVKTHIASLMAKLGARNR 202 >gi|298504366|gb|ADI83089.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 214 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + EGK S EIA IL +S ++ Y + +M K + +A+ + + Sbjct: 151 LSQREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITNIPSLVKFALLHGV 210 >gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896214|gb|EFG75876.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 223 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT +E L +SEG T+ +IA + ++ TV NY++ ++ K + R+ A +A + Sbjct: 150 LTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASK 206 >gi|289706741|ref|ZP_06503085.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289556541|gb|EFD49888.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 224 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT REV+ L G + IA L +S TV N++++ + KTAT TR A A Sbjct: 164 LTPREVDVLREALTGASVRAIAGRLHLSAGTVRNHLSAAIGKTATSTRGEAATVA 218 >gi|198275681|ref|ZP_03208212.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135] gi|198271310|gb|EDY95580.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135] Length = 202 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + + G T+ EIA L IS +TV + +I RK + +G YA+ N + Sbjct: 133 LSQREKEIVGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGLTIYAIVNKL 192 Query: 246 V 246 V Sbjct: 193 V 193 >gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++EG + +IA LGIS TV + I K +R+ A+ A+ N+ Sbjct: 148 LTDRERAVLRLLAEGMHNKQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANL 207 Query: 246 V 246 + Sbjct: 208 L 208 >gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 214 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E L I EG T+ +IA + ++ TV NY++ ++ K + R+ A AVR Sbjct: 155 LTEQERVLLDLIGEGLTNRQIAERMFLAEKTVRNYVSKLLAKLGVERRTQAAVLAVRT 212 >gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana) tropicalis] Length = 241 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE + L +++G ++ EIA L +SR TV +++ + RK A +R A+ A Sbjct: 180 LSVREGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREA 234 >gi|118580732|ref|YP_901982.1| LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503442|gb|ABK99924.1| transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 201 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ +E E + +S+G T+ EIA L IS TV +I +I +KT R+ + ++ Sbjct: 138 LSNKEREVVISVSQGLTNREIAARLYISEQTVKTHINNIFKKTNMARRTQLVPLGIK 194 >gi|229514137|ref|ZP_04403598.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21] gi|229348117|gb|EEO13075.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21] Length = 208 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE + +GK EIA L +S TV+ + A+I+ K I +A+++ Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQ 203 Query: 245 IV 246 ++ Sbjct: 204 LL 205 >gi|172062531|ref|YP_001810182.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171995048|gb|ACB65966.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 203 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ + I G+T IA L +S TV+ Y I+ K + + YAVR+++ Sbjct: 137 LSARELDVMRRIVAGQTVTRIAAELTLSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 196 >gi|34497324|ref|NP_901539.1| LuxR family two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34103180|gb|AAQ59543.1| probable two-component response regulator, LuxR family [Chromobacterium violaceum ATCC 12472] Length = 222 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT +E E L WI+EG + EIA S T++ S+M+K K G ++Y Sbjct: 155 LTKKEWEVLLWIAEGMSVSEIASKKQRSIKTISTQKRSVMKKLGIKNDFGLMSY 208 >gi|226359606|ref|YP_002777384.1| two-component response regulator DevR [Rhodococcus opacus B4] gi|226238091|dbj|BAH48439.1| two-component response regulator DevR [Rhodococcus opacus B4] Length = 215 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 181 GKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 GKD LT +E L + EG T+ +IA + ++ TV NY++ ++ K + R+ A Sbjct: 143 GKDGIFAHLTNQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAA 202 Query: 238 AYAVR 242 A + Sbjct: 203 VLATK 207 >gi|225351362|ref|ZP_03742385.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157706|gb|EEG70989.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 220 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G+ LT RE + + ++EG + EIA L +S TV N I+ I+ KT R+ Sbjct: 157 GRFANLTERERDVMQLVAEGYDNREIAAKLFLSEGTVRNRISDILAKTNVTNRT 210 >gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 231 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E + I+ G T E+A L IS TV +++S++RK R+ +A I Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|54302058|ref|YP_132051.1| putative transcriptional regulator UhpA [Photobacterium profundum SS9] gi|46915479|emb|CAG22251.1| putative transcriptional regulator UhpA [Photobacterium profundum SS9] Length = 209 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E T + +GK E +IL IS T++ + A+I+ K I +A+++ + Sbjct: 147 LTKREYEVFTHLIQGKDVKEAGIILSISYKTIHVHRANILSKLGLSNNVDLIRFALQHKL 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|331002765|ref|ZP_08326280.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon 107 str. F0167] gi|330407178|gb|EGG86682.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon 107 str. F0167] Length = 215 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E + + EG ++ +IA L +S TV ++++I K +R+ + + RN Sbjct: 144 LTKRELEVVLLLKEGYSNAKIAEELFVSEGTVKKHLSNIFGKLQLYSRTEVLVFVERN 201 >gi|291446388|ref|ZP_06585778.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291349335|gb|EFE76239.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 337 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V G D+ TGR E + +S G T + +A LG+S TV ++ + + +R A Sbjct: 267 VEPGDDWRPTGRHRELVRMLSGGLTDEAMARKLGLSERTVRRLVSELTERLGAASRFQAG 326 Query: 238 AYAVR 242 AVR Sbjct: 327 VCAVR 331 >gi|229522252|ref|ZP_04411668.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM 11079-80] gi|229340237|gb|EEO05243.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM 11079-80] Length = 208 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE + +GK EIA L +S TV+ + A+I+ K I +A++++ Sbjct: 144 DLTKREVEVFDLLVKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203 Query: 245 IV 246 ++ Sbjct: 204 LL 205 >gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 223 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L +++G + +IA L IS TV N++ + + K R + YA+ Sbjct: 157 KAPQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 216 Query: 242 RNNI 245 + Sbjct: 217 ERGL 220 >gi|294013470|ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676800|dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 250 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W+ G + I+ + IS TV ++ +++RK K R+ A +A + + Sbjct: 158 LSDRELEILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNRTQAAIWAANHGM 217 >gi|297563666|ref|YP_003682640.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848114|gb|ADH70134.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ELT +E + L I EG T+ +I L ++ TV NY+++++ K K R+ A Sbjct: 160 ELTPQERQILDLIGEGMTNRQIGERLYLAEKTVKNYVSALLSKLDLKRRTQA 211 >gi|219882706|ref|YP_002477870.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Arthrobacter chlorophenolicus A6] gi|219861712|gb|ACL42053.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Arthrobacter chlorophenolicus A6] Length = 859 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L + K ++++A L +S NTV + SI++K A + A+ A R + Sbjct: 797 LTPRELVVLNAFARHKAANDVAAALNVSVNTVKSQRRSILKKLAAHSMEEALTIARRQRL 856 Query: 246 V 246 + Sbjct: 857 L 857 >gi|157961641|ref|YP_001501675.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846641|gb|ABV87140.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 211 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L + G T+ +IA L +S +T+ ++ RK +R AIA+A N Sbjct: 148 LTIREREVLQVLRNGSTNIDIANRLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQTN 205 Searching..................................................done Results from round 2 >gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH Sbjct: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI Sbjct: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW Sbjct: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA Sbjct: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 Query: 241 VRNNIV 246 VRNNIV Sbjct: 241 VRNNIV 246 >gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 246 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 224/246 (91%), Positives = 234/246 (95%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MNFE+QQVNIVLNREDEQRTS VSHLPTRSDLLARMIPLD TVS MRMYALTEYVGASH Sbjct: 1 MNFEMQQVNIVLNREDEQRTSIVSHLPTRSDLLARMIPLDRTVSSKMRMYALTEYVGASH 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120 FLLVRWDLFQEQKLDS+VSSDWPFDLVRCM LSEKDKYYNVLQRP ELFCPVFH LPENI Sbjct: 61 FLLVRWDLFQEQKLDSVVSSDWPFDLVRCMTLSEKDKYYNVLQRPAELFCPVFHILPENI 120 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P+GMDNRYC+LTFDV RIRIGLMLLFPKGRI+ +DRLWEIGLLAAYQANMFK+Y+VH Sbjct: 121 DLPSGMDNRYCALTFDVGRIRIGLMLLFPKGRIVSQDRLWEIGLLAAYQANMFKNYNVHL 180 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 GKDFELTGRE+ECLTWISEGKTSDEIAVILGISRNT+NNYIASIMRKTATKTRSGAIAYA Sbjct: 181 GKDFELTGREIECLTWISEGKTSDEIAVILGISRNTINNYIASIMRKTATKTRSGAIAYA 240 Query: 241 VRNNIV 246 VRNNIV Sbjct: 241 VRNNIV 246 >gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 124/248 (50%), Positives = 162/248 (65%), Gaps = 2/248 (0%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ ++ Q + + ++ V L R LL R+ + T + ALTEYVGASH Sbjct: 1 MDMDVIQASKGERQMSNFASAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASH 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118 +LL R DL QE LD IVSSDWPFDLVR +A Y L++ ++F P F +P+ Sbjct: 61 YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPD 120 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + P G +YCS+TF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + Sbjct: 121 SADVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 180 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA Sbjct: 181 RVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 240 Query: 239 YAVRNNIV 246 +AVRNN+V Sbjct: 241 FAVRNNLV 248 >gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 127/252 (50%), Positives = 165/252 (65%), Gaps = 10/252 (3%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMRMYALTEYV 56 M+ I Q + + ++Q +F S L R +L+ R+ + T + ALTEYV Sbjct: 1 MDMSIFQAS----KGEKQMMNFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYV 56 Query: 57 GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFH 114 GASH+LL R DL QE LD +VSSDWPFDLV+ +A Y L++ ++F P F Sbjct: 57 GASHYLLARCDLIQESGLDFVVSSDWPFDLVKDIANDLVSGYARSTELEKCMQVFQPNFA 116 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 LPE+ P G +YCSLTF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + Sbjct: 117 LLPESAAVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLR 176 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS Sbjct: 177 CGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRS 236 Query: 235 GAIAYAVRNNIV 246 AIA+AVRNN+V Sbjct: 237 EAIAFAVRNNLV 248 >gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 124/248 (50%), Positives = 161/248 (64%), Gaps = 2/248 (0%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ + Q + + ++ V L R LL R+ + + + ALT+YVGASH Sbjct: 1 MDMNVIQASKGERQMANFASAVVPDLLPRDKLLQRLHGVTSSGRLQSGLRALTDYVGASH 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118 +LL R DL QE LD IVSSDWPFDLVR +A Y L+R ++F P F LP+ Sbjct: 61 YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELERCMQVFQPNFALLPD 120 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + P G +YCS+TF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + Sbjct: 121 SAEVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 180 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA Sbjct: 181 RVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 240 Query: 239 YAVRNNIV 246 +AVRNN+V Sbjct: 241 FAVRNNLV 248 >gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 124/248 (50%), Positives = 161/248 (64%), Gaps = 2/248 (0%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ + Q + ++ V L R +LL R+ + T + ALT+YVGASH Sbjct: 15 MDMNVIQASKGERHMANFASAVVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASH 74 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118 +LL R DL QE LD IVSSDWPFDLVR +A Y L++ ++F P F LP+ Sbjct: 75 YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPD 134 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + P G +YCS+TF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + Sbjct: 135 SAEVPDGASRQYCSVTFNVGRSRLSLMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 194 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA Sbjct: 195 KVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 254 Query: 239 YAVRNNIV 246 +AVRNN+V Sbjct: 255 FAVRNNLV 262 >gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 123/248 (49%), Positives = 162/248 (65%), Gaps = 2/248 (0%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ + Q + + ++ V L R +LL R+ + T + ALT+YVGAS+ Sbjct: 1 MDMNVIQASKGERQMANFASAAVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASY 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118 +LL R DL QE LD IVSSDWPFDLVR +A Y L++ ++F P F LP+ Sbjct: 61 YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPD 120 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + P G +YCS+TF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + Sbjct: 121 SAEVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 180 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA Sbjct: 181 KVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 240 Query: 239 YAVRNNIV 246 +AVRNN+V Sbjct: 241 FAVRNNLV 248 >gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae] Length = 262 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 124/248 (50%), Positives = 161/248 (64%), Gaps = 2/248 (0%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ + Q + ++ V L R +LL R+ + T + ALT+YVGASH Sbjct: 15 MDMNVIQASKGERHMANFASAVVPDLLPRDELLLRLHGVASTGRLQSGLRALTDYVGASH 74 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118 +LL R DL QE LD IVSSDWPFDLVR +A Y L++ ++F P F LP+ Sbjct: 75 YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPD 134 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + P G +YCS+TF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + Sbjct: 135 SAEVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 194 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA Sbjct: 195 KVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 254 Query: 239 YAVRNNIV 246 +AVRNN+V Sbjct: 255 FAVRNNLV 262 >gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 121/229 (52%), Positives = 152/229 (66%), Gaps = 2/229 (0%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 + L R +L+ R+ + T + ALT+YVGASH+LL R DL QE LD IVS Sbjct: 6 SVVAPALLPRDELVRRLHGVADTGRLQSGLRALTDYVGASHYLLARCDLIQESGLDFIVS 65 Query: 80 SDWPFDLVRCM--ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 SDWPFDLVR + L L++ ++F P F LPE P G +YCSLTF+V Sbjct: 66 SDWPFDLVRDIANDLVSTYARSTELEKCMQVFQPNFALLPEGADVPEGASRQYCSLTFNV 125 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R R+ LM LF +G I+ +RL ++GLLA Y A+ + +DFELT RE+ECL WI Sbjct: 126 GRSRLALMFLFGEGFILSPERLRDVGLLAGYIASFLRCGGAKVDRDFELTDRELECLFWI 185 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V Sbjct: 186 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234 >gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 121/248 (48%), Positives = 163/248 (65%), Gaps = 5/248 (2%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ +I Q + + + R + S +R L+ ++ + + LT+YVGASH Sbjct: 1 MDMQISQAS---KGDKDARAAAPSSAMSRDQLILQLTAVAGPAYLQSGLRVLTDYVGASH 57 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN--VLQRPTELFCPVFHTLPE 118 +LL R DL QE LD +VSSDWPFDLVR +A + Y L++ LF PVF LP+ Sbjct: 58 YLLARCDLIQESGLDFVVSSDWPFDLVRRLASELTNGYGRAGELEKSMSLFQPVFAFLPD 117 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 ++ PP G+ YC+LTF+V R R LMLL ++ +RL ++GLLA Y A+ +S + Sbjct: 118 DVEPPEGVSRHYCALTFNVGRTRFSLMLLARDSLLLSPERLRDVGLLAGYFASFTRSVEG 177 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +DF+LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA Sbjct: 178 KLERDFDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 237 Query: 239 YAVRNNIV 246 +AVRNN+V Sbjct: 238 FAVRNNLV 245 >gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 245 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 112/246 (45%), Positives = 158/246 (64%), Gaps = 3/246 (1%) Query: 3 FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62 E+ + + V + E R + + +R L+ R+ L + LTEYVGA+H+L Sbjct: 1 MEMSRSDAVWSSETAARRMYGRRI-SREQLIRRLGELASGTGLGNGLAVLTEYVGATHYL 59 Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENI 120 L R D+ Q+ LD +V SDWPFD+VR ++ ++ + L++ PVFH +P++I Sbjct: 60 LARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLNSKTTELEKCRAQLQPVFHAMPDDI 119 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P G+ YC++TF + R LMLLFP+ I+ +D L ++ +LA Y A+ DV Sbjct: 120 GLPRGVSRSYCAVTFSIGPTRFSLMLLFPEDVILSQDALRDVAVLAGYVASHKIKADVRH 179 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+A Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239 Query: 241 VRNNIV 246 VRNN+V Sbjct: 240 VRNNLV 245 >gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family [Sinorhizobium meliloti 1021] Length = 245 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 157/246 (63%), Gaps = 3/246 (1%) Query: 3 FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62 E+ + + V + E + +R L+ R+ + + ALTEYVGA+H+L Sbjct: 1 MEMSRSDAVWSSETAAPRVCGRKI-SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYL 59 Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENI 120 L R D+ Q+ LD +V SDWPFD+VR ++ ++ L+R P FHT+P++I Sbjct: 60 LARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELERCLAQLQPAFHTMPDDI 119 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P G+ YC++TF V R R LMLLFP+ I+ ++ L +I +LA Y A+ DV Sbjct: 120 GLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQEALRDIAVLAGYVASHKIKADVRH 179 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+A Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239 Query: 241 VRNNIV 246 VRNN+V Sbjct: 240 VRNNLV 245 >gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti] Length = 245 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 113/246 (45%), Positives = 157/246 (63%), Gaps = 3/246 (1%) Query: 3 FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62 E+ + + V + E + +R L+ R+ + + ALTEYVGA+H+L Sbjct: 1 MEMSRSDAVWSSETAAPRVCGRKI-SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYL 59 Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENI 120 L R D+ Q+ LD +V SDWPFD+VR ++ ++ L++ P FHT+P++I Sbjct: 60 LARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELEKCLAQLQPAFHTMPDDI 119 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P G+ YC++TF V R R LMLLFP+ I+ ++ L +I +LA Y A+ DV Sbjct: 120 GLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQESLRDIAVLAGYVASHKIKADVRH 179 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+A Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239 Query: 241 VRNNIV 246 VRNN+V Sbjct: 240 VRNNLV 245 >gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 245 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 111/225 (49%), Positives = 149/225 (66%), Gaps = 2/225 (0%) Query: 24 SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83 S +R L+ R+ S + LTEYVGA+H LL R DL Q+ LD ++ SDWP Sbjct: 21 SRGISREQLIRRLGEAAERSSLANGLAILTEYVGATHHLLARHDLSQDGGLDFVLCSDWP 80 Query: 84 FDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141 FD+VR +A + + L++ P F LP++I P G++ YCS+TF+V R R Sbjct: 81 FDVVRRLASIVIGLNAKTTELEKCLAALQPCFQVLPDDIDLPRGVNRSYCSVTFNVGRSR 140 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 LMLLFP+ I+ ++ L +I +LA+Y A+ V +DFELT RE+ECL WI+EGK Sbjct: 141 FSLMLLFPEDVILSQEGLRDIAVLASYLASFKAGAGVRHDRDFELTEREIECLFWIAEGK 200 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TS+EIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVR+N+V Sbjct: 201 TSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245 >gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 210 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 108/210 (51%), Positives = 143/210 (68%), Gaps = 2/210 (0%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKD 96 + + ALTEYVGA+H+LL R D+ Q+ LD +V SDWPFD+VR ++ ++ Sbjct: 1 MASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLH 60 Query: 97 KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 L+R P FHT+P++I P G+ YC++TF V R R LMLLFP+ I+ + Sbjct: 61 AKITELERCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQ 120 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + L +I +LA Y A+ DV ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT Sbjct: 121 EALRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDEIAVILGISRNT 180 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +NNYI S+MRKTAT+TRS AIA+AVRNN+V Sbjct: 181 INNYITSVMRKTATRTRSEAIAHAVRNNLV 210 >gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 248 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 114/237 (48%), Positives = 152/237 (64%), Gaps = 3/237 (1%) Query: 13 NREDEQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71 Q+T+ P R ++ ++ + + M+ LT+Y GASH+LL R+DL QE Sbjct: 12 QGIRSQKTANRPEGPRLRDAMIRQLSSAASSGKLRVAMHILTDYAGASHYLLARYDLIQE 71 Query: 72 QKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 LD +V++DWPFDL R +A LS L++ L F LP+++ P G + Sbjct: 72 HGLDFVVTADWPFDLARGVATELSAACSRATELEKCLGLLQAKFVLLPDDLELPLGASRQ 131 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 YCS+ F+V R R+ L++L P G +I DRL ++GLLAAY ++ +DFELT R Sbjct: 132 YCSVMFNVGRTRLALVMLLPDGFVISPDRLRDVGLLAAYCVSLSTGRSQKADRDFELTER 191 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+ECL WI+EGKTSDEIA ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V Sbjct: 192 ELECLFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 248 >gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 251 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 105/222 (47%), Positives = 142/222 (63%), Gaps = 2/222 (0%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 R L + + + + L Y GASH+LL R DL +E L I++SDWPFDL Sbjct: 30 LPRDQLAKNVAASAAAGNVSGALDLLVTYAGASHYLLAREDLLEETGLKFIITSDWPFDL 89 Query: 87 VRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 VR + L+ + +++ L P LP++++ P G+D +Y +L+F V RIR+ L Sbjct: 90 VRRLGAELANSQNRSSEMEKCLSLLQPRLLVLPDDVSVPFGIDRQYSALSFCVGRIRLSL 149 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LLFP+ + DRL EI LL Y + + + +D +LT RE+ECL WI+EGKTSD Sbjct: 150 LLLFPEHSVPSPDRLREIALLTGYCVSFGIASEAKAVRDIDLTERELECLFWIAEGKTSD 209 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA+ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V Sbjct: 210 EIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 251 >gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 226 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 104/222 (46%), Positives = 140/222 (63%), Gaps = 2/222 (0%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 R L + + + L Y GASH+LL R DL +E L IV+SDWPFDL Sbjct: 5 LPRDQLAKNVAATAAAGNVAGALDLLVTYAGASHYLLARDDLLEETGLKFIVTSDWPFDL 64 Query: 87 VRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 VR + + + +++ L P LP++++ P G+D +Y +L+F V RIR+ L Sbjct: 65 VRRLGIELTNSQNRSSEMEKCLSLLQPRLLLLPDDVSVPYGIDRQYSALSFCVGRIRLSL 124 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LLFP+ + +RL EI LL Y + + + +D +LT RE+ECL WI+EGKTSD Sbjct: 125 LLLFPEEAVPSPERLREIALLTGYCVSFGIASEAKTVRDIDLTERELECLFWIAEGKTSD 184 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA+ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V Sbjct: 185 EIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 226 >gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 224 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R+ + ++ S +++Y GA +L+ R+D + ++ D +++S+WPFDLVR Sbjct: 4 RAAFIQQIEDRTICGSIANGFDLISDYTGAKCYLVARYDHYSDRHHDFVLTSNWPFDLVR 63 Query: 89 CMA--LSEKDKYYNVLQRPTELFCPVFHTLPE-NITPPAGMDNRYCSLTFDVARIRIGLM 145 + L + + + R F P+F + + P + R C + ++V ++R+ + Sbjct: 64 NLGAGLVDAQARTSEVSRCLHAFEPLFQDVDGVAVNLPENLSPRVCLVPYNVGKVRLLMA 123 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 LLF K + DR+ + L A+Y A F +LT REVECL+WI EGKTSDE Sbjct: 124 LLFEKDAFVSHDRIRDAALAASYHAVHFTEITTTSDSLSDLTDREVECLSWIGEGKTSDE 183 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+I+GISRNTVNNYI SIM KT KTRS A+A+AVR I+ Sbjct: 184 IALIIGISRNTVNNYITSIMNKTGAKTRSEAVAFAVRQRII 224 >gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 257 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 20/240 (8%) Query: 25 HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWP 83 LP D + + L+ M +T G FL+ ++L + V S+ P Sbjct: 19 ELPRGGDFASEIAKLETQFDIIRYMRRITHIFGFKTFLICSIPPIDMERLSAATVISNMP 78 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP----ENITPPAGMD------------ 127 +L+ ++ ++R E P TL E TP + D Sbjct: 79 AELLNKYDSLSMLRFSTGVRRLRETTTPFQITLEDWESEGGTPDSAADYIVMLRENGIFQ 138 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFEL 186 Y + D R ++L+ P+ + + + E+ ++A + N W L Sbjct: 139 ANYFPVH-DAEGGRGAVILMGPEADLPMTAAM-ELQMIAIHVYNRLAEIGSVWKSSSTTL 196 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE++CL+W + GKTS EIA ILG+S +TVN+Y+ + +K R+ A+ A++ + Sbjct: 197 SEREIQCLSWTAAGKTSAEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 256 >gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 277 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 101/240 (42%), Gaps = 20/240 (8%) Query: 25 HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWP 83 LP D + + L+ M +T+ G FL+ + ++L + V S+ P Sbjct: 39 DLPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMP 98 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL---------- 133 +L+ ++ ++R E P F + E+ G + Sbjct: 99 AELLNKYDSLSMLRFSTGVRRLRETTTP-FQVMLEDWEREGGKPDSAADYIAMLRENGIF 157 Query: 134 ------TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFEL 186 D R ++L+ P+ + + + E+ ++A + N W + L Sbjct: 158 QANYFPVHDAEGGRGAVILMGPEAELPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVL 216 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE++CL+W + GKTS EIA ILG+S +TVN+Y+ + +K R+ A+ A++ + Sbjct: 217 SEREIQCLSWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276 >gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 286 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 20/240 (8%) Query: 25 HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWP 83 LP D + + L+ M +T+ G FL+ + ++L + V S+ P Sbjct: 48 DLPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMP 107 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSL------- 133 +L+ ++ ++R E P F L E+ G + Y ++ Sbjct: 108 AELLNKYDSLSMLRFSTGVRRLRETTTP-FQILLEDWEKEGGKPDAAADYFAMLRENGLL 166 Query: 134 ------TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFEL 186 D R ++L+ P+ + + + E+ ++A + N W + L Sbjct: 167 QANYFPVHDAEGGRGAVILMGPEAGLPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVL 225 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE++CL W + GKTS EIA ILG+S +TVN+Y+ + +K R+ A+ A++ + Sbjct: 226 SEREIQCLNWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285 >gi|218671090|ref|ZP_03520761.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 202 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 10/197 (5%) Query: 1 MNFEIQQVNIVLNREDEQR----TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV 56 M+ I Q + + + Q ++ L R +L+ R+ + T + ALTEYV Sbjct: 1 MDMNIFQAS----KGERQMINFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYV 56 Query: 57 GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFH 114 GASH+LL R DL QE LD +V+SDWPFDLV+ +A + Y L++ ++F P F Sbjct: 57 GASHYLLARCDLIQESGLDFVVASDWPFDLVKDIANNLVSGYARSTELEKCMQVFQPNFA 116 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 LPE+ P G +YCSLTF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + Sbjct: 117 LLPESADVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLR 176 Query: 175 SYDVHWGKDFELTGREV 191 +DFELT RE+ Sbjct: 177 CGGARVDRDFELTDREL 193 >gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 144 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 84/144 (58%), Positives = 107/144 (74%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 ++ ++F P F LPE+ P G +YCSLTF+V R R+ LM LF +G I+ +RL ++ Sbjct: 1 EKCMQVFQPNFALLPESAAVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDV 60 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 GLLA Y A+ + +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI Sbjct: 61 GLLAGYVASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYIT 120 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S+MRKTATKTRS AIA+AVRNN+V Sbjct: 121 SVMRKTATKTRSEAIAFAVRNNLV 144 >gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 321 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 22/243 (9%) Query: 23 VSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVS 79 S +++ + P + + M L G +HF++ R L EQ+ + +V Sbjct: 82 ASRREAEANMPFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERLVL 141 Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR--YCSLTFDV 137 S+WP +LV+ E + +++R + PV PE + P + + L Sbjct: 142 SNWPAELVQQYDAGETFQTSELVERLRQTKLPVTGG-PELMEPAGKGAGKAAFIRLPPHA 200 Query: 138 ARIRIGLMLLFPKGRIIL--------------RDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++L G + R L+ + LL ++ + +++D G Sbjct: 201 GMGHFAVLLHTTYGEPFVAVLSGTRDEPAGAERATLY-LALLQLFEC-LERTFDAGSGAR 258 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ REVECL W + GK+SDEIA+ILGIS TV++Y S RK R AIA A+R Sbjct: 259 EKLSSREVECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRM 318 Query: 244 NIV 246 ++ Sbjct: 319 KLI 321 >gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 247 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 22/243 (9%) Query: 23 VSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVS 79 S +++ + P + + M L G +HF++ R L EQ+ + +V Sbjct: 8 ASRREAEANMPFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERLVL 67 Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR--YCSLTFDV 137 S+WP +LV+ E + +++R + PV PE + P + + L Sbjct: 68 SNWPAELVQQYDAGETFQTSELVERLRQTKLPVTGG-PELMEPAGKGAGKAAFIRLPPHA 126 Query: 138 ARIRIGLMLLFPKGRIIL--------------RDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++L G + R L+ + LL ++ + +++D G Sbjct: 127 GMGHFAVLLHTTYGEPFVAVLSGTRDEPAGAERATLY-LALLQLFEC-LERTFDAGSGAR 184 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ REVECL W + GK+SDEIA+ILGIS TV++Y S RK R AIA A+R Sbjct: 185 EKLSSREVECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRM 244 Query: 244 NIV 246 ++ Sbjct: 245 KLI 247 >gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 247 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 18/241 (7%) Query: 23 VSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVS 79 S +D+L + P + + M L G +HF++ R + EQ+ + ++ Sbjct: 8 ASRREGETDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLML 67 Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV 137 S+WP +LV+ SE + +++R + P+ PE + P + + L Sbjct: 68 SNWPAELVQQYDASETFQASLLIERLRQTKLPIAGG-PELMEPARKGAGKAPAILLPPHA 126 Query: 138 ARIRIGLMLLFPKGR---IILRDRLWEIG---------LLAAYQANMFKSYDVHWGKDFE 185 ++L G ++L + E L + +++D G + Sbjct: 127 DMAHFAVLLHTTYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAGSGAREK 186 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK+SDEIA+ILGIS TV++Y S RK R AIA A+R + Sbjct: 187 LSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKL 246 Query: 246 V 246 + Sbjct: 247 I 247 >gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 124 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 78/124 (62%), Positives = 96/124 (77%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 P G +YCSLTF+V R R+ LM LF +G I+ +RL ++GLLA Y A+ + + Sbjct: 1 PEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDR 60 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVR Sbjct: 61 DFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 120 Query: 243 NNIV 246 NN+V Sbjct: 121 NNLV 124 >gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 108/244 (44%), Gaps = 31/244 (12%) Query: 18 QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77 Q + S L +R DL S+ M LT +GA ++LV Q++ I Sbjct: 9 QSDTLGSRLTSRGDL----------TSFFME---LTAEIGADSYMLVAMVHDQDRNDARI 55 Query: 78 VSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 VSS+W FD + + L++ RP L V P+ +G + R Sbjct: 56 VSSNWIFDAIELIGKRLIAGLAQGTLTVAPGTRPRPL---VAAQAPDADGLVSGEEARLL 112 Query: 132 ---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 SL +V R R+ + I + L + L Y + Sbjct: 113 DVLGHAEIYSLRLNVGRQRLFALFSAASAGKIDQPALMKAQLKCCYALSHIPQLIAAAAM 172 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI ++K A R+ AIA A+R Sbjct: 173 QDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIR 232 Query: 243 NNIV 246 + I+ Sbjct: 233 SGII 236 >gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 112/257 (43%), Gaps = 21/257 (8%) Query: 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64 +Q + + +Q+ S + L L +R+ T LT +GA ++LV Sbjct: 15 LQHPDGRNDSGQKQQMSSPAALLQSDTLGSRLT---SRGDLTSFFMELTAEIGADSYMLV 71 Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPE 118 Q++ IVSS+W FD + + L++ RP L V P+ Sbjct: 72 AIVHDQDRNDARIVSSNWIFDAIELIGKRLIASLAQGALTVAPGIRPRPL---VAARAPD 128 Query: 119 NITPPAGMDNRYC---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 +G + R SL +V R R+ + I + L + L Y Sbjct: 129 ADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAATSGQIDQPALMKAQLKCCYA 188 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI ++K A Sbjct: 189 LSHIPQLIAAAAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFA 248 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ AIA A+R+ I+ Sbjct: 249 ASNRAMAIATAIRSGII 265 >gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 236 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 107/244 (43%), Gaps = 31/244 (12%) Query: 18 QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77 Q + S L +R DL S+ M+ LT +GA ++LV Q++ I Sbjct: 9 QSDTLGSRLTSRGDL----------TSFFMQ---LTAEIGADSYMLVAIVHDQDRNDARI 55 Query: 78 VSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 VSS+W FD + + L++ RP L V PE G + R Sbjct: 56 VSSNWIFDAIELIGKRLIAGLAQGALTVAPGIRPQPL---VASRAPEADGLVTGEEARLL 112 Query: 132 ---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 SL +V R R+ + I + L L Y + Sbjct: 113 DVLGHAEIYSLRLNVGRQRLFALFSAATAGSIDQPALMRAQLKCCYALSHIPQLIAAAAM 172 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI ++K A R+ AIA A+R Sbjct: 173 QDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIR 232 Query: 243 NNIV 246 + I+ Sbjct: 233 SGII 236 >gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis] Length = 230 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 17/230 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMA 91 + + M LT++ GA F+++ + L S V ++WP D + Sbjct: 1 MRELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSVITNWPADFLSEYD 60 Query: 92 LSEKDKYYNVLQRPTELFCPVFH--------------TLPENITPPAGMDNRYCSLTFDV 137 ++ + R PV L ++ GM C Sbjct: 61 MASLLSSSPMFNRLRNTSIPVVFDIHVVARERDPKTVELATDLFLRFGMPRGAC-FPVHD 119 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196 A G + + + + + LA + N + E LT RE+ECLTW Sbjct: 120 AHGNRGAVNICGEMPAFSFVDMVLLHYLAGHVFNRLAEIRELDARVTETLTEREIECLTW 179 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GKTS EIA I+G+S +T+N+Y+ RK T R+ A+A A+R +++ Sbjct: 180 TAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 230 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 17/230 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMA 91 + + M LT++ GA F+++ + L S V ++WP D + Sbjct: 1 MRELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSVITNWPADFLSEYD 60 Query: 92 LSEKDKYYNVLQRPTELFCPVFH--------------TLPENITPPAGMDNRYCSLTFDV 137 ++ + R PV L ++ GM C Sbjct: 61 MASLLSSSPMFNRLRNTSIPVVFDVHVVARERDPKTVELATDLFLRFGMPRGAC-FPVHD 119 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196 A G + + + + + LA + N + E LT RE+ECLTW Sbjct: 120 AHGNRGAVNICGEMPAFSFVDMVLLQYLAGHVFNRLAEIRELDARVTETLTEREIECLTW 179 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GKTS EIA I+G+S +T+N+Y+ RK T R+ A+A A+R +++ Sbjct: 180 TAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|218680630|ref|ZP_03528527.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 186 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 64/153 (41%), Positives = 88/153 (57%), Gaps = 2/153 (1%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 M+ ++ Q + + ++ V+ L R +LL R+ + T + ALTEYVGASH Sbjct: 1 MDMDVIQASKGERQMSNFASAVVADLLPRDELLQRLHGVADTGRLQSGLRALTEYVGASH 60 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118 +LL R DL QE LD IVSSDWPFDLVR +A Y L++ ++F P F +P+ Sbjct: 61 YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPD 120 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 N P G +YCSLTF+V R R+ LM LF +G Sbjct: 121 NADVPDGASRQYCSLTFNVGRSRLALMFLFRRG 153 >gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 32/256 (12%) Query: 9 NIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALT 53 + V+N D R V+ + +RSDL R+I + + R+ Sbjct: 6 SRVMNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCEL 65 Query: 54 EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111 E G+S+ F D + + LD I S P LS + P + F P Sbjct: 66 ENWGSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAP 116 Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQA 170 L + I P +G + + + G +L D + E+ G Sbjct: 117 FMTRLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMM 171 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 231 Query: 231 KTRSGAIAYAVRNNIV 246 R AIA A+R + Sbjct: 232 VNRIQAIAKAIRLGYI 247 >gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 306 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 32/256 (12%) Query: 9 NIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALT 53 + V+N D R V+ + +RSDL R+I + + R+ Sbjct: 64 SRVINGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCEL 123 Query: 54 EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111 E G S+ F D + + LD I S P LS + P + F P Sbjct: 124 ENWGPSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAP 174 Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQA 170 L + I P +G + + + G +L D + E+ G Sbjct: 175 FMTRLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMM 229 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + Sbjct: 230 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 289 Query: 231 KTRSGAIAYAVRNNIV 246 R AIA A+R + Sbjct: 290 VNRIQAIAKAIRLGYI 305 >gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 240 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 32/253 (12%) Query: 12 LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56 +N D R V+ + +RSDL R+I + + R+ E Sbjct: 1 MNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCELENW 60 Query: 57 GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 G+S+ F D + + LD I S P LS + P + F P Sbjct: 61 GSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAPFMT 111 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173 L + I P +G + + + G +L D + E+ G ++ Sbjct: 112 RLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLL 166 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R Sbjct: 167 SLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNR 226 Query: 234 SGAIAYAVRNNIV 246 AIA A+R + Sbjct: 227 IQAIAKAIRLGYI 239 >gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 96/256 (37%), Gaps = 32/256 (12%) Query: 9 NIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALT 53 + +N D R V+ + +RSDL R+I + + R+ Sbjct: 6 SRAMNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGMPAKQRLVCEL 65 Query: 54 EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111 E G S+ F D + + LD I S P LS + P + F P Sbjct: 66 ENWGLSNVGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FSP 116 Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQA 170 L + I P +G + + + G +L D + E+ G Sbjct: 117 FMTRLKDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDTIVELHGRCCHVMM 171 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + Sbjct: 172 DLLSLDERRSAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 231 Query: 231 KTRSGAIAYAVRNNIV 246 R AIA A+R + Sbjct: 232 VNRIQAIAKAIRLGYI 247 >gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 245 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L M +TE + F+++ L S V + WP +L+ Sbjct: 13 DDYVQEIAGLKTQFDIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTVITSWPAELLA 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135 VL+R P F+ + +N + G R Sbjct: 73 LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNWSRDDGKSILVASLFERFKMMRCAYFPT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ +A + + ++ LT RE++CL Sbjct: 133 HEPSGLRGAVSFAGDREPFSSAEMRELCYIAIHVFDRLAEIRNLDTRMTDTLTDREIDCL 192 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 193 NWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 245 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L + +TE F+++ L S V + WP +L+ Sbjct: 13 DDYIKEIAGLKTQFDIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTVLTSWPAELLA 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135 VL+R P F+ + ++ G R Sbjct: 73 LYDQEGLMVDSPVLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 A G + + E+ +A + + ++ LT RE++CL Sbjct: 133 HEASGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 193 NWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 89/240 (37%), Gaps = 14/240 (5%) Query: 21 SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVS 79 V P D + + L M +T+ F++V L + + V Sbjct: 5 VQVGRSPRGEDYIDEIAGLKTQFDVFRFMKRVTDAYRCRAFMVVNLPSLTSFELQSNSVI 64 Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM------------D 127 ++WP +L+ + V +R P + N Sbjct: 65 NNWPAELLTVYDQEGLLRNSTVSRRLRVSTLPFVYDTAANTNRDDSKIQLRASLFERFRM 124 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFEL 186 R L A G ++L + ++ +A + + ++ L Sbjct: 125 ARSICLPTHDASGIRGAVILSGDREAFTAEETKDLCYIAIHVFDRLAEIRNLDVRIVDTL 184 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE++CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 185 TDRELDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGLI 244 >gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 245 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 85/232 (36%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L M +TE F+++ L S V + WP +L+ Sbjct: 13 DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGSTVITSWPAELLA 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135 VL+R P F+ + +N G R Sbjct: 73 LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNWPRDDGKSALVVGLFERFRMTRCAYFPT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ +A + + ++ LT RE++CL Sbjct: 133 HEPSGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRITDALTDREIDCL 192 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 193 NWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 245 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L + +TE F+++ L S V + WP +L+ Sbjct: 13 DDYIKEIAGLKTQFDIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTVLTSWPAELLA 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135 VL+R P F+ + ++ G R Sbjct: 73 LYDQEGLMVDSPVLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 A G + + E+ +A + + ++ LT RE++CL Sbjct: 133 HEASGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTEREIDCL 192 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 193 NWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L + +TE + FL++ + S V + WP +L+ Sbjct: 12 DDYIKEIAGLKTQFDIFRFLKRVTEAYRSRAFLVLNLPPITSLDIQGSTVITSWPAELLA 71 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135 VL+R P F+ + EN + G R Sbjct: 72 LYDQEGLLVNSPVLRRLRTSARPFFYDMSRENWSRDDGKSILVASLFERFRMMRGAYFPT 131 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ ++ + + ++ LT RE++CL Sbjct: 132 HEPSGVRGAISFAGDREPFSPAEMRELCYISIHVYDRLAEIRNLDTRITDTLTDREIDCL 191 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 192 NWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 32/257 (12%) Query: 8 VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYAL 52 ++ ++ RT V+ + +RSDL R+I + + R+ Sbjct: 5 AGRTMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGLPAKQRLVCE 64 Query: 53 TEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 E G+S+ F D + + LD I S P LS Y P + F Sbjct: 65 LENWGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FS 115 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQ 169 P L + I P +G + + + G +L D + E+ G Sbjct: 116 PFMTRLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIM 170 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K Sbjct: 171 MDLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLD 230 Query: 230 TKTRSGAIAYAVRNNIV 246 + R AIA A+R + Sbjct: 231 SVNRIQAIAKAIRLGYI 247 >gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 32/257 (12%) Query: 8 VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYAL 52 ++ ++ RT V+ + +RSDL R+I + + R+ Sbjct: 5 AGRTMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGSGLPAKQRLVCE 64 Query: 53 TEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 E G+S+ F D + + LD I S P LS Y P + F Sbjct: 65 LENWGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FS 115 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQ 169 P L + I P +G + + + G +L D + E+ G Sbjct: 116 PFMTRLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIM 170 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K Sbjct: 171 MDLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLD 230 Query: 230 TKTRSGAIAYAVRNNIV 246 + R AIA A+R + Sbjct: 231 SVNRIQAIAKAIRLGYI 247 >gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L M +TE + F+++ L S V + WP +L+ Sbjct: 12 DDYVQEIAGLKTQFDIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTVITSWPAELLA 71 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135 VL+R P F+ + +N++ G R Sbjct: 72 LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNLSRDDGKSILVASLFERFKMMRCAYFPT 131 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ ++ + + ++ LT RE++CL Sbjct: 132 HEPSGLRGAISFAGDREPFSPAEMRELCYISIHIFDRLAEIRNLDTRMTDTLTDREIDCL 191 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 192 NWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 97/253 (38%), Gaps = 32/253 (12%) Query: 12 LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56 ++ ++ R V+ + +RSDL R+I + + R+ E Sbjct: 9 MSSAEQLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGIPAKQRLVCELENW 68 Query: 57 GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 G+S+ F D + + LD I S P LS Y P + F P Sbjct: 69 GSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FSPFMT 119 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173 L + I P +G + + + G +L D + E+ G ++ Sbjct: 120 RLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLL 174 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234 Query: 234 SGAIAYAVRNNIV 246 AIA A+R + Sbjct: 235 IQAIAKAIRLGYI 247 >gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 244 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 15/235 (6%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFD 85 P D L + L + +TE + F+++ + S V + WP + Sbjct: 9 PEEDDYLKEIAGLKTQFDIFRFLKRVTEAYRSRAFMVLNLPPITSLDIQGSTVITSWPAE 68 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCS 132 L+ VL+R P + + +N + G R Sbjct: 69 LLALYDQEGLLVNSPVLRRLRTSARPFSYDMSRDNWSRDDGKSVLVTALFERFRMMRGAY 128 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREV 191 G + + E+ +A + + ++ LT RE+ Sbjct: 129 FPTHEPSGLRGAVSFSGDRETFSPAEMRELCYIAVHVYDRLAEIRNLDARITDTLTDREI 188 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +CL W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 189 DCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L + +TE + F+++ L S V + WP +L+ Sbjct: 16 DDYINEIAGLKTQFDIFRFLKRVTEAYRSRAFMVLNLPPTTSLDLQGSTVITSWPAELLA 75 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135 VL+R P F+ + E + G R Sbjct: 76 LYDQEALMVNSPVLRRLRTSTRPFFYDMTRETWSRDDGKSVLVTGLFERFRMMRGAYFPT 135 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 A G + + E+ +A + + ++ LT RE++CL Sbjct: 136 HEASGLRGAVSFAGDREPFSAAEMRELCYIAIHVFDRLAEIRNLDTRMTDSLTDREIDCL 195 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 196 NWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 247 >gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 32/253 (12%) Query: 12 LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56 ++ ++ R VS + +RSDL R+I + + R+ E Sbjct: 9 MSSAEQLRMVRVSRISSRSDLFPRLIAMQKLVDAQGFAIFRVSGSGLPAKQRLVCELENW 68 Query: 57 GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 G S+ F D + + LD I S P LS Y P + F P Sbjct: 69 GPSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FAPFMT 119 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173 L + I P +G + + + G +L D + E+ G ++ Sbjct: 120 RLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLL 174 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234 Query: 234 SGAIAYAVRNNIV 246 AIA A+R + Sbjct: 235 IQAIAKAIRLGYI 247 >gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 245 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L M +TE F+++ L + V + WP +L+ Sbjct: 13 DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135 VL+R P + + +N + G + R Sbjct: 73 LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ +A + + ++ LT RE++CL Sbjct: 133 HEPSGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 193 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 245 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L M +TE F+++ L + V + WP +L+ Sbjct: 13 DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135 VL+R P + + +N + G + R Sbjct: 73 LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ +A + + ++ LT RE++CL Sbjct: 133 HEPSGLRGAVSFAGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 193 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 246 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L M +TE F+++ L + V + WP +L+ Sbjct: 14 DDYIKEIAGLKTQFDIFRFMKRMTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 73 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135 +L+R P + + +N + G + R Sbjct: 74 LYDQEGLMVNSPILRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 133 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ +A + + ++ LT RE++CL Sbjct: 134 HEPSGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A+A A+R ++ Sbjct: 194 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 245 >gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 5/191 (2%) Query: 59 SHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 +H ++ + F ++ D +V D+ D V L+ K+ V P + +F Sbjct: 56 THKIIYSDNAFMQRTDDYVVPMEDYAADKVFPQILAGKE-VIKVTNSPVYVHDVIFQHAG 114 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKS 175 + P ++RY + +I +++F + +I L A N + Sbjct: 115 NAGSKPCENEDRYILAKMN-HETQIASLIVFVVNAKESEGKFEQIACYLHAHLLTNYVRI 173 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V +L+GRE LTW+ GKTS E+A IL I+ NTVN +I +I K R Sbjct: 174 LSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFHIKNIKNKLNATNRQH 233 Query: 236 AIAYAVRNNIV 246 A+A A+ +I+ Sbjct: 234 AVAIAIAKSII 244 >gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 246 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 19/246 (7%) Query: 18 QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS- 76 Q+T + D + + L+ + LTE G F+++ +L Sbjct: 2 QKTETAAVQSIGVDCVREIAGLNTQFDIFRFLKRLTEAWGFKAFMVLDLSAEMASELSQC 61 Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------PPAGMDN 128 + + WP +L++ + V+ + + P +L ++ P G+ Sbjct: 62 TIITSWPAELLQRYDEEGMLQRSLVMAQLKKSTTPFSVSLDFLVSGDENAPKKPVIGLFE 121 Query: 129 RYC---SLTFDVARI--RIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHW 180 R+ S+ F V I G + + +L E+ ++++ + + + D+ Sbjct: 122 RFDMINSVWFPVHDITTMRGAVSFSGNKTTLPTSQLAELFYISSHIFARLSEIRRLDLRV 181 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + L RE++CL W + GKTS EIA I+ +S +T+N+Y+ +K T R+ A+A A Sbjct: 182 PE--TLNEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKA 239 Query: 241 VRNNIV 246 +R ++ Sbjct: 240 LRVGLI 245 >gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 32/253 (12%) Query: 12 LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56 ++ ++ R V+ + +RSDL R+I + + R+ E Sbjct: 9 MSSAEQSRMVRVNRISSRSDLFPRLIAMQKLADAHGFAIFRVSGSGIPAKQRLVCELENW 68 Query: 57 GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 G+S+ F D + + L+ I S P LS P + F P Sbjct: 69 GSSNAGFGKAFTDAYGDALLEHIEKSLLP--------LSWAGGCDRAAPGPAD-FAPFMT 119 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173 L + I P +G + + + G ++ D + E+ G ++ Sbjct: 120 RLQDGIVPFSG-----LAFPVRLGAVGNGFIVFTGDEIDPSSDTIVELHGRCCHIMMDLL 174 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234 Query: 234 SGAIAYAVRNNIV 246 AIA A+R + Sbjct: 235 IQAIAKAIRLGYI 247 >gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 245 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQKLDSIVSSDWPFDLVRCM 90 + R+ + +T++ ++F + D DSI+ + P DLVR Sbjct: 15 MRQRLNNCTTQFDLLRLLREVTQFHQYTYFFIASGCDGATRSLADSIIITSAPSDLVRRY 74 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENIT-----PPAGMDNR---------YCSLTFD 136 + + +++ P+ L E IT A +D+ + + + Sbjct: 75 DETGLMERSPLMRALGGRGTPLQCRLDETITAFTTEQQAALDDFSAEFNIDCCFITPVYH 134 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLT 195 + L + ++ + + ++++ + K D LT RE ECL Sbjct: 135 RDHGPAAVCFLGKRNQMSFSEA-ANLAMISSLAHQKLRRVSAQPSKADSPLTERERECLV 193 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W S GKTS EIA IL +S +TVN+Y+ + RK R+ A+A A+R + Sbjct: 194 WTSSGKTSVEIARILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIRQGFI 244 >gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 250 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 31/207 (14%) Query: 50 YALTEYVGASHFLLVRWDLFQEQK---LDSIVSSDWPF-------DLVRCMALSEKDKYY 99 ++ G + +++Q++K +D +VS F + + LSE + Sbjct: 65 RVVSSGFGFESKSVEWDNIYQKKKFQYIDPVVSCSASFRRSFNWASVPSMITLSEVQ--F 122 Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 N L+R E+ G+ +F +I L + G + ++L Sbjct: 123 NFLERAQEM----------------GLKEGASIGSFSTRQIYKELTITSVCGCSLNPEQL 166 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + L+ A A K + K LTGRE E L W SEGK+S EI +I I+ TV Sbjct: 167 ASLELINAVSAQAMKRLILPAEK---LTGRESEILAWSSEGKSSWEIGMICSITERTVKF 223 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I +K + R+ AI A+R ++ Sbjct: 224 HLKNIYKKLNVQNRAQAIVCAIRLGLI 250 >gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 21/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRC 89 D++ R+ + + Y G F++ Q + L D + WP + + Sbjct: 10 DVIGRLQAASSQTALFSELKEAGRYFGYDSFIVTGLPHRQGENLNDCSLLVGWPMEWAKR 69 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDV 137 V+ + P N +P G++ +C + Sbjct: 70 YTERRYIHVDPVIAQIRRTLDPFMWDEAPYDRSDPGPATVMNESPSFGLNQGFC-VPIHR 128 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-------TGRE 190 R + + D + L+A Y + ++ + + RE Sbjct: 129 IDGREAGVSFGASRMDLSDDARAGLHLVAIYAFSAARALSAMPSNPADPERQPPRCSARE 188 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EC+ W + GKT EI+ IL +S+ TV Y+ + RK R IA A+R+ ++ Sbjct: 189 IECMRWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244 >gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 87/235 (37%), Gaps = 19/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRC 89 D++ R+ V + G FL+ + L D + S WP + R Sbjct: 13 DIVHRLRRASTDVDVYSELRRSGAIFGYDVFLIAGLPRAPHENLYDCSLISGWPPEWGRR 72 Query: 90 MALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPPAGMD----NRYCSLTFDVA 138 V++ P PE + N + F Sbjct: 73 YQERRHMHVDPVIRHIRGTTDPFLWQEAVDAQVTPEGMVVMEEARAFSLNEGFCVPFHQI 132 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191 + + + +D + L+A Y + K+ G LTGRE Sbjct: 133 DGTEAGVSFGGEQVRLSQDERAALHLVAIYAMSTAKAIARRRGLSEDDGTPPSPLTGREA 192 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W S GK++ EI VIL IS TV +++ S +RK + TR+ A+A A+R +I+ Sbjct: 193 ECLKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHII 247 >gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 246 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 80/232 (34%), Gaps = 18/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSI-VSSDWPFDLV 87 L + + T + G +F ++ Q + I V S WP +L+ Sbjct: 13 LYEPISKIRTTFDAIQVLRKTCLSYGFRYFSVLTIPAMVSESAQVMSHISVISSWPPELI 72 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV---------- 137 E K VL+R + P+ + + G + F Sbjct: 73 ADYDRLELGKNSPVLERLRKQITPLLFEVENIDSERDGAEQASAKELFTRFGVTMGVYFP 132 Query: 138 ---ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVEC 193 R + + + + L + + A + + L RE E Sbjct: 133 VQDGRGQRFAVCFMGARKPLSATELPSLAMFATLLVDQLSQITANEDTAKLVLNARETEV 192 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L W +EGKTS EIA I G+S +TVN+Y +K R+ A+ A+R + Sbjct: 193 LQWTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIRLGL 244 >gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 243 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 18/234 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLV 87 + + ++ + ++ +T G + + EQ+ ++ DWP + + Sbjct: 9 EYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPVEWL 68 Query: 88 RCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFDV 137 + V+ +L P F + AG L F + Sbjct: 69 ERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFPL 128 Query: 138 A--RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVE 192 +I ++ L + + + L++ Y K ELT RE E Sbjct: 129 ITLDGQIVMVSLGGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHIELTPRERE 188 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R + Sbjct: 189 CLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 238 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDL 86 ++ L + W + + G +H L+R Q L +V S P + Sbjct: 6 RQARLCRDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWV 65 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----NITPPAGMDN-------RYCSLTF 135 V M V++R P + +L + + +++ + Sbjct: 66 VNAMTKDGALGDCPVIKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSGLMVPV 125 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECL 194 + LM + + L E+ ++A + + + V LT RE++ + Sbjct: 126 NGMSGNRHLMNFAGDRDTLPQASLNELCMIALHALETYDRLCRVASKGPSPLTKRELDVV 185 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W ++GKTS EIA +L IS +TVN Y+ + MRK R+ +A +R ++ Sbjct: 186 RWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLI 237 >gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 222 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 ++++Y+ S ++++ QE +V P +V +A+ E D + V +P Sbjct: 17 SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPIF 74 Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV + E I + Y F++ + + + L + ++I + I Sbjct: 75 RLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLERSQLIEAEWRSRI 134 Query: 163 G-LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+ + ++ K + H + LT RE + L ++EG ++ +I L +S TV Sbjct: 135 NEPLSNHTSSSHKRHHFHSFSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLSSRTVEK 194 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT + R+ + +A+ N+++ Sbjct: 195 YVSSLLRKTDSSNRAELVRFALENDLI 221 >gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 243 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 22/236 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85 + + ++ + R+ +T G + + Q+++ ++ DWP + Sbjct: 9 EYIDQLQHAATAAAVCERLLGITSDFGLTALMAGTVPQPGTPAGQQKQ--HVLLCDWPGE 66 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR------------YCSL 133 + + V+ +L P + Sbjct: 67 WLERYVARNYVDHDPVVSHMKQLQAPFQWHEASQGIRIDKSSGEVMGDAGAFKLRDGLAF 126 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGRE 190 +I ++ L + + ++ L++ Y + + LT RE Sbjct: 127 PLITLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMANRTIDHIVLTPRE 186 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R + Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti] Length = 243 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 22/236 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85 + + ++ + R+ +T G + + Q+++ ++ DWP + Sbjct: 9 EFIDQLQHAATAAAVCERLLGITADFGLTALMAGTVPQPGTPAGQQKQ--HVLLCDWPGE 66 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR------------YCSL 133 + + V+ +L P + Sbjct: 67 WLERYVARNYVDHDPVVSHMKQLQAPFQWREASQSIRIDKSSGEVMGDAGAFKLRDGLAF 126 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGRE 190 +I ++ L + + ++ L++ Y K + LT RE Sbjct: 127 PLVTLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMASKSIDHIVLTPRE 186 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R + Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 222 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 ++++Y+ S ++++ QE +V P +V +A+ E D + V +P Sbjct: 17 SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74 Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV + E I + Y F++ + + + L + ++I + I Sbjct: 75 RLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIRALLERSQLIEAEWRSRI 134 Query: 163 G-LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+ + + +K + H + LT RE + L ++EG ++ +I L +S TV Sbjct: 135 NEPLSNHTSPRYKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNVKIGNSLHLSSRTVEK 194 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT + R+ + +A+ N+++ Sbjct: 195 YVSSLLRKTDSSNRAALVRFALENDLI 221 >gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 237 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 84/232 (36%), Gaps = 15/232 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWPFDLVR 88 DL R+ + + ALT F + F ++ I S+ P + + Sbjct: 5 EDLFQRLKTATTEHELAVSLQALTSEFDFRFFSIFDIPATFSDRLSKHIRLSNLPSEYIE 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF------------- 135 +V + P+ L + + + F Sbjct: 65 EYDSLNLLSNSSVFAMLRQSTAPMTRFLDLAVKERPTEEQQVMRAVFEKHNMTMGVYFPV 124 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECL 194 + R M + + +GL + + + K + K +T RE+E L Sbjct: 125 HGSNGRRAAMAFYGTRPALSFAETGVLGLCVLHAFDAYSKMTNKTGTKANGITTRELEVL 184 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS EIA IL +S +TVN Y+ S MRK R+ +A A+R +++ Sbjct: 185 HWAANGKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHLI 236 >gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 242 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + T D SL + + G + PK G++I + R L E+G++ Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRSVVNGHAYIHPKVTGKLINQLRRMTYLDEMGVI 159 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + A M G+D LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 160 SGAAAGMEPGVKFVAGEDNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 219 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K R+ A+ +++ Sbjct: 220 QKMEVDDRTQAVIQSIKYG 238 >gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 22/236 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85 + + ++ + ++ +T G + + Q+++ ++ DWP + Sbjct: 9 EYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPAGQQKQ--HVLLCDWPVE 66 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR------------YCSL 133 + + V+ +L P + Sbjct: 67 WLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQDIRIDKSSGEVMGDAGAFKLRDGLAF 126 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGRE 190 +I ++ L + + + L++ Y G ELT RE Sbjct: 127 PLITLDGQIVMVSLGGEAVELSAAEFGLVSLVSTYAVGRAMQLHTMSGNTIDHVELTPRE 186 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R + Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] Length = 222 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 ++++Y+ S + ++ QE +V P +V +A+ E D + V +P Sbjct: 17 SISDYLEMSGYFVISATNGQEAL--QLVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74 Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV + E I + Y F++ + + + L + ++I + I Sbjct: 75 RLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLERSQLIEAEWRSRI 134 Query: 163 G-LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+ + ++ K + H + LT RE + L ++EG ++ +I L +S TV Sbjct: 135 NEPLSNHTSSSHKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLSSRTVEK 194 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT + R+ + +A+ N+++ Sbjct: 195 YVSSLLRKTDSSNRAELVRFALENDLI 221 >gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii] Length = 243 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 22/236 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85 + + ++ + ++ +T G + + Q+++ ++ DWP + Sbjct: 9 EYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSGQQKQ--HVLLCDWPVE 66 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTF 135 + + V+ +L P F + + AG L F Sbjct: 67 WLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSDEVMGDAGAFKLRDGLAF 126 Query: 136 DVA--RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGRE 190 + +I ++ L + + + L++ Y ELT RE Sbjct: 127 PLITLDGQIVMVSLGGEAVQLSGAEFGLVSLVSTYAVGRAMQIHTMATSTIDHIELTPRE 186 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W + GK+ EI+ ILGIS +T ++ + K R A+A A+R + Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242 >gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + + A G ++ ++ +++ WP Sbjct: 12 DFIEGLGVYRKVPDAMNALEAAFGRFGFETIIVTGLPNPDQRFAQMVLAKRWPAGWFNLY 71 Query: 91 ALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDN-----------RYCSLTFDVA 138 + D++ V++ + P + P + R + Sbjct: 72 TQNNYDRFDPVVRLCRQSVNPFEWSEAPYDAELEPSAAEVMNRAGDFRMSRGFIVPIHGL 131 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWI 197 + L + + L+A Y + + + LT RE E ++W Sbjct: 132 TGYEAAVSLGGVHLDLNPRSKPALHLMAMYGFDHIRRLLEPTPYPSTRLTPREREVISWA 191 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S+GK++ EI IL I++ T ++A+ RK R+ A+A A+R+ I+ Sbjct: 192 SQGKSAWEIGEILHITQRTAEEHLATAARKLGAVNRTHAVALAIRHKII 240 >gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 226 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 19/212 (8%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 A+ +Y+ S + +V QE S++ + P LV + + D Y V QRP Sbjct: 17 AVKDYLELSGYSVVTAKNGQEAL--SLLETYHPHLLVSDIKMPRTDGYELVAQVRQRPEF 74 Query: 108 LFCPVFHTLPENITP------PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 PV ++ T AG D Y F++ + + L + +I+ + ++ Sbjct: 75 RLLPVVFLTEKSTTHERIRGYQAGCDV-YLPKPFEMEELGAVIRNLLERSQIMESEWRYK 133 Query: 162 IGLLAAYQANMFKS-------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L QA + KS ELT RE + L +++G ++ EI L +S Sbjct: 134 NRQLQEKQAELKKSQPPPPLPELPTLNPPPELTAREKQVLELLAQGLSNVEIGQQLHLSP 193 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV Y++S++RKT T R+ + +A+ +++V Sbjct: 194 RTVEKYVSSLLRKTETNNRAELVRFALEHHLV 225 >gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens] Length = 234 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 17/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 +L ++ + +W+ +++L + G S L S + S++ Sbjct: 1 MLEEILMCETLDAWSQVLFSLAKDCGFSSVLFGVKPTISTPFSSSTIISNYSKSWRAFYD 60 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPP---------AGMDNRYCSLTFDVARIRI 142 + + V+ P+ T I PP A + R Sbjct: 61 SNACYEVDPVVFHCLNSSLPLVWTKENFINPPELQLYEAASASGVRSGLCMPIHGPRGEF 120 Query: 143 GLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194 G++ + +I L + L+ Y F+ K+FE LT RE+ECL Sbjct: 121 GMLNFITDEKSPADLINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECL 180 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W++ GKTS EI+ IL + TVN ++ + MRK ++R A+ +R+ +V Sbjct: 181 KWVAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 254 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 15/231 (6%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88 D + + L M +TE F+++ L + V + WP +L+ Sbjct: 13 DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135 VL+R P + + +N + G + R Sbjct: 73 LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194 G + + E+ +A + + ++ LT RE++CL Sbjct: 133 HEPSGLRGAVSFAGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 W + GKTS EIA IL +S +TVN+Y+ +K T R+ A ++ + Sbjct: 193 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQARRQGAQDRL 243 >gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens] Length = 234 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 17/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 +L ++ + +W+ ++AL + G S L S + S++ Sbjct: 1 MLEDILMCETLEAWSKVLFALAKEYGFSSVLFGVKPTISTPFSSSTIISNYSRSWRSIYD 60 Query: 92 LSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCS---LTFDVARIRI 142 + + V+ P F PE A + CS + R Sbjct: 61 ANAYYEVDPVVFHCLNSSLPLVWTKENFINKPEQQLYEAASASGVCSGLCMPIHGPRGEF 120 Query: 143 GLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194 G++ + +I L + L+ Y F+ K+ E LT RE+ECL Sbjct: 121 GMLNFITDEKSPADVIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECL 180 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W++ GKTS EI+ IL + TVN ++ + MRK ++R A+ +R+ +V Sbjct: 181 KWVAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 250 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 33/208 (15%) Query: 50 YALTEYVGASHFLLVRWDLFQE---QKLDSIVSS--------DWPFDLVRCMALSEKDKY 98 ++ G +++Q+ Q +D IVS +W + M+LSE Sbjct: 65 RVVSSGFGFEAKSAEWGNIYQKNKFQYIDPIVSCSKSIRSSFNWT-SVPSMMSLSESQ-- 121 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 N L++ E+ G+ +F I L + GR + ++ Sbjct: 122 LNFLEQAEEM----------------GLKEGASIGSFSSRHIYKELNITSVSGRSLNSEQ 165 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L + L+ A ELT RE E L W SEGK+S EI +I I+ TV Sbjct: 166 LATLELINTVSAQAMTRL---TNPVEELTKREREILAWSSEGKSSWEIGMICSITERTVK 222 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I +K + R+ AI A+R ++ Sbjct: 223 FHLKNIYKKLNVQNRAQAIVCAIRQGLI 250 >gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 15/225 (6%) Query: 37 IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95 ++ + ++E G F+++ L + + + WP D +R + Sbjct: 21 GSIENEDDVRGALGRVSEGFGFRGFMVLAIPDSGSHSLTAQALMTTWPMDFLRRYDSARL 80 Query: 96 DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-------------LTFDVARIRI 142 V+QR P + + L A Sbjct: 81 IDGSPVIQRLRRSTIPFTYDAHQLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHR 140 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGK 201 + + D L E+ L A + + L+ RE+ECL W + GK Sbjct: 141 AAVAFGGDRSAVSGDELQELNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGK 200 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ E+A I+ +S TVN+Y+ RK + R +A A+R ++ Sbjct: 201 TTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245 >gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 243 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 24/232 (10%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + R+ + +L G + +++ + +++ WP D + Sbjct: 18 DAVERLDAPA----LVSQFESLIASCGFTAYIIAGLPSRNAGLPELTLANGWPRDW-FDL 72 Query: 91 ALSEKDKYYNVLQRPTELFC---------------PVFHTLPENITPPAGMDNRYCSLTF 135 +SE + + R P H + ++ L + Sbjct: 73 YVSENFSAVDPVPRHVASTVHPFVWSEAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHY 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECL 194 D I + K + + L++ Y + ++ G+ +LT RE E L Sbjct: 133 DDGSAAIS---MAGKDPDLSPAARGAMQLVSIYAHSRLRTLGRPKPGRRNKLTARECEIL 189 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W ++GKT+ EI++IL I+ TV ++ RK R+ A+A A+ ++ Sbjct: 190 QWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241 >gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 215 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 22/208 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 ++++Y+ S + ++ + QE +V P +V + + E D Y + RP Sbjct: 17 SISDYLEISGYTVISAENGQEAL--ELVDKHKPHLIVTDITMPEMDGYDLVKRIRSRPAF 74 Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII---LRDR 158 PV HT ++ G DN Y F++ + + + L + ++I LR R Sbjct: 75 RLLPVIFLTAHTAIQSRIRGYQLGCDN-YLPKPFELDELGVVIRALLERSQLIESELRSR 133 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + E ++ + F + LT RE + L ++EG+++ +I L +S T+ Sbjct: 134 VSESPVVTNGATSTF-------SHEISLTEREQQVLDLLTEGRSNVKIGEKLHLSPRTIE 186 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT + R+ + +A++N+++ Sbjct: 187 KYVSSLLRKTESNNRAELVRFALKNHLI 214 >gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 6/139 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + T D +L + + G + PK G++I + R L E+G + Sbjct: 100 VFETLRKGATGYLLKDMEAEALINAIRSVMTGHSYIHPKVTGKLINQLRRMTYLDEMGAV 159 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + A G+D LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 160 SGAAAGKETGVKFVAGEDNPLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSIL 219 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K R+ A+ ++++ Sbjct: 220 QKMEVDDRTQAVIHSIKFG 238 >gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia stabilis] Length = 239 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 16/235 (6%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPF 84 R D + + R+ A ++ +G + + R L + +I + Sbjct: 3 LRRQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLPVSKPSVAIFDTYPDG 61 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------ 138 + R A + + V V+ + + P D R L+ VA Sbjct: 62 WMARYQAQNYIEIDSTVRDGALSTNMIVWPDVDRSDPGPLWQDAREFGLSVGVAQSSWAA 121 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191 R GL+ + + + + L L+ + F + LT RE Sbjct: 122 RGAFGLLSIARHADRLTPAEINILTLQTNWLASLSHSLMSRFMVPKLSPAAGVTLTARER 181 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 243 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 20/218 (9%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 R +L G + +++ + +++ WP D + +SE + + R Sbjct: 28 LISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDW-FDLYVSENFSAVDPVPR 86 Query: 105 PTELFC---------------PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 P H + ++ L +D I + Sbjct: 87 HGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAIS---MAG 143 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAV 208 K + + L++ Y + ++ + LT RE E L W ++GKT+ EI+V Sbjct: 144 KDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISV 203 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IL I+ TV ++ RK R+ A+A A+ ++ Sbjct: 204 ILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241 >gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 242 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 6/139 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + T D SL + + G + PK G++I + R L E G + Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRTVAEGNAFIHPKVTGKLIQQLRRMEYLSETGAI 159 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A A G D LT RE E L ++EG+++ I L IS TV N+++SI+ Sbjct: 160 AEDTAIREAGVKFVAGDDNPLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSIL 219 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K R+ A+ A++ Sbjct: 220 QKMDVDDRTQAVINAIKFG 238 >gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297] gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297] Length = 240 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 21/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 DLL R+ T + ++++ V +FL D ++ ++P + R Sbjct: 2 DLLERLQQAQSTSELPEILESISQVVEFDYFLFGLALPNSITHSDILMYDNYPGEWRRVY 61 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRYCSLTFDV 137 S K ++Q + PV +G+ + SL Sbjct: 62 DESGYAKRDPIVQYSISNYMPVTWAQISESPSYSRSDLKIMWEAEASGLKAGF-SLPIHG 120 Query: 138 ARIRIGLMLLFP-----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGRE 190 A G++ + R+ + + I +L + K V K+ +LT RE Sbjct: 121 AVGEFGMISFASNHNTDEQRLKYAEAIPVIQMLVPAIQDAVKRLRVSESKEPPAKLTKRE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +ECLTW +EGK+S EI+ ILG S T ++++ K R AI+ A+ I+ Sbjct: 181 IECLTWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCGII 236 >gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 243 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 20/218 (9%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 R +L G + +++ + +++ WP D + +SE + + R Sbjct: 28 LISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDW-FDLYVSENFSAVDPVPR 86 Query: 105 PTELFC---------------PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 P H + ++ L +D I + Sbjct: 87 HGATTVHPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAIS---MAG 143 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAV 208 K + + L++ Y + ++ + LT RE E L W ++GKT+ EI+V Sbjct: 144 KDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISV 203 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IL I+ TV ++ RK R+ A+A A+ ++ Sbjct: 204 ILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241 >gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 35/251 (13%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78 S+++ +S L A + + + ++ G S+ L+ ++ L + + Sbjct: 1 MSYMTTSERQSLLAAELAVAGTRGLFAQGLGRVSAAFGLSYATLMHAPSPEDLLLKPLLI 60 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------------------ 120 S P VR + + R E P+ L + + Sbjct: 61 ESSLPAAYVRDFDRANMMRGCPFGVRLRESAVPLAWHLDDTVNGQAFPAELRALMLRHAI 120 Query: 121 -----TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 P +D R F R +G + +IL L AY A Sbjct: 121 PAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIVILHT-------LDAYNAVRRNE 173 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + H L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ Sbjct: 174 ENAHSA----LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQ 229 Query: 236 AIAYAVRNNIV 246 +A A+R ++ Sbjct: 230 LVAKAIRLKLI 240 >gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 239 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 16/238 (6%) Query: 24 SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83 S L DL ++ L+ + R+ AL G +L + I+++ W Sbjct: 2 SRLTEALDLAEQIGRLETAQDVSARLGALARDYGFHAHVLASFQGPGTVAEPRILAAGWA 61 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIR 141 + +++ V+ R T P L E P G+ + F + Sbjct: 62 QEWQERYLVNQYAVDDPVVVRATLASMPFRWSDALNEPWVTPRGVRVFDEARAFRLCDGV 121 Query: 142 I----------GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTG 188 G + L + + + L + L+ Y + ++ D W LT Sbjct: 122 FIPVYGPKGLEGGLSLGGERVDVGAEELKALHLVGLYAYDHVRALSQGDPAWSAGT-LTP 180 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ECL W++ GKTS EI+ +LGISR+T + Y+A +RK R+ A+A A R ++ Sbjct: 181 RELECLKWVAAGKTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAFRRAMI 238 >gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 78/218 (35%), Gaps = 15/218 (6%) Query: 44 SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEKDKYYNVL 102 + +++ G F+++ L + + + WP + +R + + V+ Sbjct: 28 DVKRVLDQISDAFGFRGFMVLAIPDSGCHSLAAQALLTSWPMEFLRRYDSAGLIEGSPVI 87 Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA-------------RIRIGLMLLFP 149 QR P + F+ A + + Sbjct: 88 QRLRRSTIPFTYDAHLLARRRVDGKGEAAISVFEAAGMPRGLYLPVHDAKGGRAAIAFGG 147 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAV 208 ++ D + + A + H + L+ RE+ECL W + GKT+ E+A Sbjct: 148 DREVVSSDEMQALNFWAGLLYSRLSEVRTHDRRRPGSLSRREIECLRWAAAGKTTVEMAR 207 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ +S TVN+Y+ RK + R +A A+R ++ Sbjct: 208 IMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGLI 245 >gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] Length = 239 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 90/239 (37%), Gaps = 18/239 (7%) Query: 24 SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83 + L + + + + + R+ L + G + F L SI+ S W Sbjct: 2 NPLTAALEFVESINNEETPDGVSKRIAELGQSFGFTSFCLAAIPEAGASFDGSIMLSGWR 61 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPPAGMDNRY-----C 131 + + + + ++ + P L Y Sbjct: 62 PEWQQRYLDRDYVQNDPIVAKARTASRPFLWSSVARDRNLTAAAQQVLSEARDYGMYDGV 121 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + + G ML+F + L +R L +G+ A+ + + + + LT Sbjct: 122 CVPVHGLQGYQG-MLIFGGPEVRLNEREISVLHLVGIYASNKVRELVGANTNRPRH-RLT 179 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ECL W + GKTS EI+ IL IS++T + Y+AS RK R+ A+A R ++ Sbjct: 180 PRELECLKWSAAGKTSWEISQILNISQHTADWYLASAARKLHAANRTHAVAEGFRLGLI 238 >gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 15/225 (6%) Query: 37 IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95 +D + ++E G F+++ L + + + WP D +R + Sbjct: 21 GAIDSEDDVRRALGRVSEGFGFRGFMVLAIPESGSHSLTAQALMTTWPMDFLRRYDSARL 80 Query: 96 DKYYNVLQRPTELFCPV---FHTLPENITPPAGMDN----------RYCSLTFDVARIRI 142 V+QR P H L G R L A Sbjct: 81 IDGSPVIQRLRRSTIPFTYDAHLLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHR 140 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGK 201 + + D + + L A + + L+ RE+ECL W + GK Sbjct: 141 AAIAFGGDRSAVSDDEMQALNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGK 200 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ E+A I+ +S TVN+Y+ RK + R +A A+R ++ Sbjct: 201 TTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245 >gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 229 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 20/214 (9%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 A+ +++ S + +V QE S++ + P LV + + + Y V QRP Sbjct: 17 AVKDFLELSGYSVVTAKNGQEAL--SLLETYHPHLLVSDIKMPRTNGYELVAQVRQRPEF 74 Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV T E I + Y F++ + + L + +II + ++ Sbjct: 75 RLLPVVFLTEKSTTSERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERSQIIESEWRYKN 134 Query: 163 GLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEIAVILGI 212 +A QA+ K D ELT RE + L +++G ++ EI L + Sbjct: 135 RQIAQKQAHSPKIEPEEKIIDPLPPKPTVELPELTEREKQVLELLAQGLSNVEIGQKLHL 194 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV Y++S++RKT T R+ + +A+ N++V Sbjct: 195 SPRTVEKYVSSLLRKTETNNRAELVRFALDNDLV 228 >gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 239 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 16/231 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 D + + R+ A ++ +G + + R L + +I + + Sbjct: 7 DAYHQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLPVSKPAVAIFDTYPDGWMAH 65 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------RIRI 142 + D V V+ + P D R L VA R Sbjct: 66 YQEQNYIDIDSTVRDGALSTNLIVWPDADKAGASPLWADARASGLAVGVAQSSWAARGAF 125 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANM-------FKSYDVHWGKDFELTGREVECLT 195 GL+ + + + + L + AN+ F + + LT RE E L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSGFMVPKLAPEANVVLTAREREVLC 185 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 186 WTAEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum] Length = 261 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 92/261 (35%), Gaps = 24/261 (9%) Query: 7 QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66 Q + + +R S L + + + + + G Sbjct: 4 QSHGKMPLASSRRESRGPDLFSFIECAIQTRSIAALFDL---LVNFASNEGFDKVAYGAL 60 Query: 67 DLFQEQKLDSIVSS----DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---HTLPEN 119 E++L + ++P D + A E V++R L P T Sbjct: 61 SCSNERRLPEYLPPPPTINFPSDWCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYE 120 Query: 120 ITP----------PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--- 166 + P AG+ + F + P +DR+ + LA Sbjct: 121 LQPRELRVLREAKEAGLKHGMSVPLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAF 180 Query: 167 -AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + D D LT RE ECL W++EGK++ I ++ ++ NTVN ++ +++ Sbjct: 181 HNAVAQITPPLDESCETDIPLTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVI 240 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK R+ A+A A R I+ Sbjct: 241 RKLGAANRTNAVAKATRRGII 261 >gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans ATCC BAA-247] Length = 239 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 34/244 (13%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPF 84 R D + + R+ A ++ +G + + R L S Sbjct: 3 LRRQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLP---------VSKPSV 52 Query: 85 DLVRCMALSEKDKY---------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 + Y V V+ + + P D R L+ Sbjct: 53 AIFDTYPDGWMAHYQAHNYIEIDSTVRDGALSTNMIVWPDVDQIAPCPLWQDARDFGLSV 112 Query: 136 DVA------RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGK 182 VA R GL+ + + + + L L+ + F + Sbjct: 113 GVAQSSWAARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAA 172 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ Sbjct: 173 GVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIS 232 Query: 243 NNIV 246 ++ Sbjct: 233 AGLI 236 >gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] Length = 239 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236 >gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 17/183 (9%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---HTLPENITP----------PAGMD 127 ++P D + A E V++R L P T + P AG+ Sbjct: 71 NFPSDWCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLK 130 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----AYQANMFKSYDVHWGKD 183 + F + P +DR+ + LA A + D D Sbjct: 131 HGMSVPLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETD 190 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL W++EGK++ I ++ ++ NTVN ++ +++RK R+ A+A A R Sbjct: 191 IPLTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRR 250 Query: 244 NIV 246 I+ Sbjct: 251 GII 253 >gi|311280044|ref|YP_003942275.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308749239|gb|ADO48991.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 216 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 35/184 (19%) Query: 68 LFQEQKLDSIVSSDWPFDLVRC------MALSEKDKYYN--VLQRPTELFCPVFHTLPEN 119 LF Q +DS W F L C + + Y+N +++ P + VFHT + Sbjct: 58 LFDMQSIDSQAMHQWCFALQNCPKQFKVLLFNTPQHYHNRDIVEWP--MISGVFHTETDE 115 Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 G+ N V R ++ Y Sbjct: 116 EHLIDGIKN--------VCRGEKCF-----------------PKVINDYIVQQLNLSHPQ 150 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + ELT RE E L + +G ++ EIA +L IS NTV +I ++ +K + K R+ A+ + Sbjct: 151 WNECVELTRREKEILCKLRQGASNIEIAHLLFISENTVKTHIYNLFKKLSVKNRTQAVFW 210 Query: 240 AVRN 243 A RN Sbjct: 211 ANRN 214 >gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] Length = 239 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 244 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 18/233 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L ++ D + +G HFL + + S +P + + Sbjct: 6 LFESLLNCDSVEELHSATTTIARAMGFEHFLYGVQVNTSLTRPYRFILSCYPEEWRKHYD 65 Query: 92 LSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMD---NRYCSLTFDVARIRI 142 + + P+ F E D S + R Sbjct: 66 KEGYANFDPTVSHCARTSIPIIWKKEIFKGRRETRVRNEAKDCGLVSGASFSVHGGRGEA 125 Query: 143 GLMLLFPKGRIILRDR-----LWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVEC 193 ++ L + + LL Y + + G K LT RE EC Sbjct: 126 AMLSLATSRESREAQNDILATMAKAQLLTCYLHEAVQRIVLSKGPLPVKKANLTEREQEC 185 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKT EIA I+ IS TV ++ + ++K R AI+ A+ ++ Sbjct: 186 LLWAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRALSMGLI 238 >gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616] Length = 239 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPETRVALTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis] Length = 239 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] Length = 239 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416] gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia] gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] Length = 259 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 16 DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75 D+ + + + + + + ++ +TE +G H+L + + Sbjct: 5 DKINATLIRDIGSNDEFDFE--------DLSGKLAEVTEVIGFEHYLFAVSVPVTVMRAE 56 Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129 ++V ++ P + +E + V+ P+ + +P++ + Sbjct: 57 NVVLTNQPLAWRQFYEDNEVMYFDQVVLHCRNSMLPLQWRSLLANDIPDDKNVIKLASDF 116 Query: 130 YCS--LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184 +T + L L+ R R E +L+ Y ++ Y Sbjct: 117 GLGDGITIPLRANHGCLGLISFSNRKGTRKIDHESTILSTYVGSLVADYINDIRNHVCEK 176 Query: 185 -------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE CL W++EGK+S E+A I+G S TVN +I + K +R+ A+ Sbjct: 177 QFGQVKSSLTLREQICLAWVAEGKSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAV 236 Query: 238 AYAVRNNIV 246 + A+ + Sbjct: 237 SKALLTGSI 245 >gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 239 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 234 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 8/221 (3%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92 + + + A ++ +F L R +V ++ P V Sbjct: 13 PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITNVPERRVGLFIA 72 Query: 93 SEKDKYYNVLQRPTELF-CPVFHTLPENITPPAGM------DNRYCSLTFDVARIRIGLM 145 + ++ NV + + PV E P+ + + R + Sbjct: 73 TLREALGNVRAKSAQFLATPVHGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRRYCL 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + ++ L A + + LT RE E + W SEGKTS E Sbjct: 133 VLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGRLTQREAEIVKWTSEGKTSAE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria] gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 239 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPESSVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLRWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 242 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 85/235 (36%), Gaps = 17/235 (7%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI----VSSDWP 83 D + R + D + + + + G H + E+ LD + V D+P Sbjct: 7 RLGDFIERTLRADTAPALMSELKSALVHWGFPH-MACGAFGEPERPLDDMSVPAVVVDYP 65 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLT 134 + + V+ R + + P + L + P M ++ Sbjct: 66 EEWQKYYFEKNYVTIDPVITRACQAYVPYRWDQLRDLTNPQKRMFKEATEAGLRHGITVP 125 Query: 135 FDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMF--KSYDVHWGKDFELTGREV 191 I + + I R L +L ++ + LT RE Sbjct: 126 VHGPNGSIFVASVASPHTDIDHLRSLSVANVLVTQVYSVLVGMRHPGAPSAPVSLTARER 185 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W + GK+S +I VIL IS NTVN ++ + M K TR AI A+R ++ Sbjct: 186 ECLIWSARGKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGLI 240 >gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 8/221 (3%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92 + + + + ++ +F L R +V ++ V Sbjct: 13 PELSRAINRTDFFRLLKSAAQHYNFDNFALARISEASAPFGERDVVITNVAERRVGLFIT 72 Query: 93 SEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFD-----VARIRIGLM 145 + K+ V + + H + P + N + S F R + Sbjct: 73 TLKEALGTVRAKTAQFLATPVHGRSAQPEVYPSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + + + +I L A + + LT RE E + W SEGKTS E Sbjct: 133 VLSGERQEPDQSEIADILLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSAE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia] Length = 239 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria] Length = 258 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLTTVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPVSWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGETGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQHAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans] Length = 239 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 AR GL+ + + + + L + AN+ S + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLSPEARVALTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 239 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGLI 236 >gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 201 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 14/185 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC---- 131 V + WP +L++ + V+ + + P ++ + + N+ Sbjct: 16 YTVITSWPAELLQRYDEEGMLQNSRVMAQLKKSTIPFSVSMDFLVNGEEHIANKTVIGLF 75 Query: 132 -------SLTFDVARI--RIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWG 181 S+ F V + R G + ++ RL E+ ++ + A + + + Sbjct: 76 ERFEMVNSVWFPVHDVTMRRGAISFSGNKAVLPTTRLAELLYISCHVFARLSEIRRLDLR 135 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE++CL W + GKTS EIA I+ +S +T+N+Y+ +K T R+ A+A A+ Sbjct: 136 VPETLSEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKAL 195 Query: 242 RNNIV 246 R ++ Sbjct: 196 RVGLI 200 >gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4] gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4] Length = 243 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 23/183 (12%) Query: 68 LFQEQKLDSIVSSDWPF---DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 FQ+ + IVSS+ F D + + +S +K+ ++ + E F TLP Sbjct: 79 AFQDPAIRHIVSSEPSFVWSDFSKTLPISRDEKW--LMDQAKEFFVSNGFTLP-----IL 131 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKD 183 +D R +TF + L+A+ A + Y + + Sbjct: 132 SLDGRRAGVTFA------------GSDIDDSPQARTGMALIASLVFARALELYGANQKQT 179 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E + WI+ GKT EI+VI G+S V ++ +IM K +RS AIA A R Sbjct: 180 TRLTPREREVIGWIANGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVSRSHAIAEAFRQ 239 Query: 244 NIV 246 ++ Sbjct: 240 KLI 242 >gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 506 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 12/169 (7%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV--ARIRIGLM 145 M + + D+ L + ++ PVF NI P + ++ + S L V R +G+M Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQSYVNKFHLSSLLVCPVIDNRRMLGIM 396 Query: 146 LLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWI 197 LL GR D R+ E L A + + + Y LT RE E L I Sbjct: 397 LLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQLI 456 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + EI L IS TV +++SI+RK K R+ A+A A+R I+ Sbjct: 457 ADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505 >gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 240 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + D SL + + G + PK G++I + R L E G + Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A G++ LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 159 AEGHTKE-AGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K R+ A+ +++ Sbjct: 218 QKMEVDDRTQAVINSIKYG 236 >gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa E681] Length = 240 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + D SL + + G + PK G++I + R L E G + Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A G++ LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 159 AEGHTKE-AGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K R+ A+ +++ Sbjct: 218 QKMEVDDRTQAVINSIKYG 236 >gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 AR GL+ + + + + L + AN+ S + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLAPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae] Length = 258 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 APGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 8/221 (3%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92 + + + A ++ +F L R +V + P V Sbjct: 13 PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITSVPERRVGLFIA 72 Query: 93 SEKDKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + K+ V + + H T P + + + R + Sbjct: 73 TLKETLGTVRAKSAQFLATPVHGRSAEPDTYPSDRLFNEFRSGVFLFIPLFTPEGRRYCL 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + + ++ L A + + LT RE E + W SEGKTS E Sbjct: 133 VLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSAE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia] gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARRADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEASVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 +R GL+ + + + + L A + ANM S + LT R Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 249 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 20/223 (8%) Query: 44 SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103 AL E G HF+ K +V S P +Q Sbjct: 22 GVQRLCAALGEAYGFDHFIYGASFPTSLIKPAVLVISGHPEAWRDHYQACGYLAVDPAVQ 81 Query: 104 RPTELFCPV----FHTLPENITPPAGMDNRY--------CSLTFDVARIRIGLMLLFPKG 151 T P+ P+ P + SL+ +R +G++ + Sbjct: 82 HCTRSIRPLIWQDLMLDPKIDEKPFTVMQEAREFGLVSGVSLSIRGSRGELGVLSFSSER 141 Query: 152 -----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTS 203 R + + ++ LL+AY F ELT RE ECL W +EGKTS Sbjct: 142 TAQQTRSEIDSAIPDLYLLSAYVHEAVGRLVTQGSLPFNRPELTAREHECLLWAAEGKTS 201 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA ILGIS T ++ + R+ +R A+A AV ++ Sbjct: 202 WEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQGLI 244 >gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria] Length = 258 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b] gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei DM98] gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 14] gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 91] gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 9] gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei B7210] gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei NCTC 13177] gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 112] gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei BCC215] gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei] gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei] gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei] gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b] gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] Length = 239 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 +R GL+ + + + + L A + ANM S + LT R Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii] Length = 258 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 8/221 (3%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92 + + + + ++ +F L R IV ++ V Sbjct: 13 PELSRAINRTDFFRLLKSAAQHYNFDNFALARISEASAPFGERDIVITNVAERRVGLFIT 72 Query: 93 SEKDKYYNVLQRPTELFCPVFHT-------LPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + K+ V + + H P ++ + + + R + Sbjct: 73 TLKEALGTVRAKTAQFLATPVHGRSAQPEDYPSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + + + ++ L A + + LT RE E + W SEGKTS E Sbjct: 133 VLCGERQEPDQSEIADMLLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSAE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 7894] Length = 239 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 +R GL+ + + + + L A + ANM S + LT R Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 239 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 234 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 8/221 (3%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92 + + + A ++ +F L R +V ++ P V Sbjct: 13 PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITNVPERRVGLFIA 72 Query: 93 SEKDKYYNVLQRPTELF-CPVFHTLPENITPPAGM------DNRYCSLTFDVARIRIGLM 145 + ++ NV + + PV E P+ + + R + Sbjct: 73 TLREALGNVRAKSAQFLATPVHGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRRYCL 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + ++ L A + + LT RE + + W SEGKTS E Sbjct: 133 VLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGRLTQREADIVKWTSEGKTSAE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 DREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 261 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 21/237 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRRKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++L F D L E + ++ +N + + LT R Sbjct: 128 AAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 187 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 188 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244 >gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 242 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 17/217 (7%) Query: 44 SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103 S + + G S +++ + +++ WP V + Sbjct: 27 SLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLANGWPRGWFELYVGRNYMAVDPVPR 86 Query: 104 RPTELFCPV--------------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 P H + + + L +D ++ + Sbjct: 87 HGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLVRGYCIPLHYDDG---GAMISMAG 143 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + + + L+ Y N +S + + LT RE E L+W ++GKT+ EI++I Sbjct: 144 EAPDLDPTAKGAMQLIGVYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEISMI 203 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++ RK R+ A+A A+ ++ Sbjct: 204 LRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI 240 >gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria] Length = 237 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 29/231 (12%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R+ L + M +Y G + L++ Q+ ++ + P V+ + Sbjct: 3 RLAGLIGRFTVDMGY----DYYGFT--LII---PMSMQRPKVVLFNQCPISWVQTYTDNN 53 Query: 95 KDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDVARIR 141 V+Q + P++ L E G+ + S A Sbjct: 54 MLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGE 113 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREVECLT 195 G++ R D L E + ++ AN + + LT RE ECL Sbjct: 114 NGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLF 172 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 173 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 223 >gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565] gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565] Length = 258 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 20/234 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + + T + + +G +F L+ QK + ++ P + Sbjct: 10 IDKFTKATKTSDIQQLLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTTWFDAYSE 69 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR-------------YCSLTFDVAR 139 ++ V+ + P+F + +P +R S + Sbjct: 70 NQYLTQDPVVYLGLKQTQPIFWNKLDCDSPWLPSASRDVMNLAADFGVRNGVSFPLHTPQ 129 Query: 140 IRIGLMLLFPKGRI---ILRDRLWEIGLLAAY----QANMFKSYDVHWGKDFELTGREVE 192 G++ K + ++ + + + A+Y + KS EL+ RE E Sbjct: 130 GEHGILSFITKDKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDMMKYLTELSDREKE 189 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W SEGKTS EIA ILGIS TVN ++ + KT +K RS AIA + + I+ Sbjct: 190 CLFWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSGII 243 >gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 506 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 12/169 (7%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV--ARIRIGLM 145 M + + D+ L + ++ PVF NI P ++ + S L V R +G+M Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQPYVNKFHLSSLLVCPVIDQRRLLGIM 396 Query: 146 LLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWI 197 LL GR D R+ E L A + + + Y LT RE E L I Sbjct: 397 LLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQLI 456 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + EI L IS TV +++SI+RK K R+ A+A A+R I+ Sbjct: 457 ADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505 >gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 241 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 91/251 (36%), Gaps = 35/251 (13%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78 S+++ +S L A + + + + G +H L+ ++ L + + Sbjct: 1 MSYMTTSERQSLLSAELAVAGTRGLFAQALGRVATAFGLAHATLMHAPSPEDLLLKPLLI 60 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF----------------------HTL 116 S P VR + + R E P+ H + Sbjct: 61 ESSLPAAYVRDFDRANMMRGCPFGLRLRESAVPLAWHLNDVVNGQAFPAELRALMLHHAI 120 Query: 117 PENI-TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 P + P +D R F R +G + IIL L AY Sbjct: 121 PAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILH-------ALDAYNTVRRNE 173 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 H L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ Sbjct: 174 ESAHNA----LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQ 229 Query: 236 AIAYAVRNNIV 246 +A A+R ++ Sbjct: 230 LVAKAIRLKLI 240 >gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli] Length = 242 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 19/236 (8%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-----IVSSDWPF 84 D + R +G HF L L Q+ S ++S ++P Sbjct: 4 RDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPS 63 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCP-----------VFHTLPENITPPAGMDNRYCSL 133 V V + + P + + T D + Sbjct: 64 RWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPI 123 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGRE 190 RI + + + + + L+ A+ A F + +LT RE Sbjct: 124 HEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHALYTMRFATEQTQIPTAVKLTSRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECLTW++ GK+S EI I+ IS +TVN ++ + M K T +R A A ++ Sbjct: 184 AECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239 >gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 239 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 7/115 (6%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGREV 191 R GL+ + + + ++ L A + ANM S + LT RE Sbjct: 122 RGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 20/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + M T +G + Q+ ++ + P V+ Sbjct: 8 EYLEHLTMVTDESRLAEVMSRFTVGIGYDDYRFAVILPTSMQRRKEVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 ++ ++Q P++ L E G+ + S Sbjct: 68 TVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190 A G++ + R L +L+ + + LT RE Sbjct: 128 ATGESGILSFITRERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRE 187 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 240 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 7/139 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + D SL + + G + PK G++I + R + E G + Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIHQLRRMTYVNEAGAM 158 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + G++ LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 159 AES-GSREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K R+ A+ +++ Sbjct: 218 QKMEVDDRTQAVINSIKYG 236 >gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis] Length = 239 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 16/231 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 D + + R+ A ++ +G + + R L + +I + + R Sbjct: 7 DAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLPVSKPSVAIFDTYPDGWMAR 65 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------RIRI 142 A + + V V+ + + P D R L+ VA R Sbjct: 66 YQAQNYIEIDSTVRDGALSTNMIVWPDVDRSDPGPLWQDAREFGLSVGVAQSSWAARGAF 125 Query: 143 GLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLT 195 GL+ + + + + L L+ + F + LT RE E L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVLC 185 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 186 WTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella australiensis 50-1 BON] Length = 217 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y +V ++ + + + + +L QA+ ++V D +LT Sbjct: 102 GYILKDAEVDQLVEAIHKAYRGQLYVQTE--MANPVLKEDQASPLYGFNVGIRYDDDLTQ 159 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE E L +++G ++ EIA L IS TV N+++SI RK R+ A YA+++ Sbjct: 160 REREVLALVAKGLSNGEIAKKLFISEKTVKNHLSSIFRKLNVSDRTQAAVYAIKHG 215 >gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 239 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 7/115 (6%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGREV 191 R GL+ + + + ++ L A + ANM S + LT RE Sbjct: 122 RGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + LT R Sbjct: 120 AARGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPAAGVTLTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K A + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGLI 236 >gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 8/221 (3%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92 + + + A ++ +F L R IV ++ V Sbjct: 13 PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDIVITNVAERRVGLFIA 72 Query: 93 SEKDKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + ++ + + H T P ++ + + R + Sbjct: 73 TLREALGTTRAKSAQFLATPVHGRSAQSDTYPSDLLFNEFRSGVFLFIPLFTPEGRRYCL 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + + ++ L A + + LT RE E + W SEGKTS E Sbjct: 133 VLSGEREEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSAE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 20/234 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R T ++ + +G +F L+ QK + ++ P + Sbjct: 12 IDRFTKAKKTSEIQQQLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTSWFEAYSE 71 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR-------------YCSLTFDVAR 139 V+ + P+F + +P +R S + Sbjct: 72 RHYLTQDPVVFLGLKQTQPIFWNKLDCDSPWLPSASREVMNLAADFGVRNGVSFPLHTPQ 131 Query: 140 IRIGLMLLFPKGRI---ILRDRLWEIGLLAAY----QANMFKSYDVHWGKDFELTGREVE 192 G++ K + ++ + + + A+Y + KS EL+ RE E Sbjct: 132 GEHGILSFISKEKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDLMKHLTELSDREKE 191 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W SEGKTS EIA ILGIS TVN ++ + KT +K R+ AIA ++ + I+ Sbjct: 192 CLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 245 >gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 261 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 21/237 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++L F D L E + ++ +N + + LT R Sbjct: 128 AAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 187 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 188 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244 >gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 260 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 97/247 (39%), Gaps = 28/247 (11%) Query: 16 DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75 D+ + VS + + R++ +D + + + ++ F +V ++ L Sbjct: 19 DDAHSDSVSEKERGTTMKTRIVLIDDHKLFREGIKRILDF--EQDFEVVAEGSDGDEAL- 75 Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-----------------VFHTLPE 118 ++V P ++ + + + N ++ +L V H L Sbjct: 76 ALVERYKPDVVIMDINMP----HVNGVEATRQLIEAYPDTKVIILSIHDDESYVMHALQT 131 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + +L V + G L PK + + + E L A + + + Sbjct: 132 GAMGYLLKEMDADALIEAVRVVAEGGSYLHPK---VTHNLVKEYRRLVAGEGGGKEKQNQ 188 Query: 179 HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + + L T RE E L +++GK++ IA L IS TV N++++I++K R+ A+ Sbjct: 189 DVCRPYHLLTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAV 248 Query: 238 AYAVRNN 244 A++N Sbjct: 249 VVAIKNG 255 >gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] Length = 258 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRCAGLIGRFTLDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+Q + P++ L E G+ + S Sbjct: 68 TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191 A G++ R D L E + ++ AN + + LT RE Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA + + I+ Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241 >gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 241 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-AAYQA 170 VF TL + + D SL + + G + PK L ++L + L A Sbjct: 100 VFETLRKGASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVA 159 Query: 171 NMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 ++D LT RE E L ++EG+++ I L IS TV N+++SI++ Sbjct: 160 GGNPAHDSALRYIDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQ 219 Query: 227 KTATKTRSGAIAYAVRNN 244 K R+ A+ A++N Sbjct: 220 KMEVDDRTQAVIIAIKNG 237 >gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 238 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 35/243 (14%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDL 86 +S L A + + + ++ G SH L+ ++ L + + S P Sbjct: 6 RQSLLSAELSTARTRSLFAQALGRISTAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAY 65 Query: 87 VRCMALSEK---------------------DKYYNVLQRPTELFCPVF-HTLPENI-TPP 123 VR + + N P EL + H +P + P Sbjct: 66 VRDFDRAHMMRGCPFGVRLRASAVPPAWHLNDASNGQAFPAELRALMLRHAIPAGVAMPT 125 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 D + F R +G + IIL A N K + Sbjct: 126 TAADGQRLVFWFCGERAALGQSEINELVMIILH---------ALDAYNAVKRNE--ECAH 174 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R Sbjct: 175 NALSNRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRL 234 Query: 244 NIV 246 ++ Sbjct: 235 KLI 237 >gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia thailandensis] Length = 239 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 +R GL+ + + + + L A + ANM S + LT R Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGLI 236 >gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 240 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 24/241 (9%) Query: 27 PTRSDLLARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSD 81 D R+ + M LT+ +G + FL++ + ++ + + ++ Sbjct: 1 MKLEDEFNRIEEVAAGFKTHYEVFKYMKGLTQDLGMTAFLIMTLPTVEFVEIGATKIITN 60 Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------------- 127 WP ++V V++R P F+ E I G Sbjct: 61 WPAEMVDYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGGGKKSTVIDLFRRYGM 119 Query: 128 NRYCSLTFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 + A G M + +I ++ I L + + + H K Sbjct: 120 EKGAYFPLHDAAGGRGAMSISGSRNFSMIEMAKILFIATLIYDRLSQLTLNEKH--KPIA 177 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T E++CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+R NI Sbjct: 178 FTSSELDCLRLTAGGRKSSEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNI 237 Query: 246 V 246 + Sbjct: 238 I 238 >gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7] Length = 260 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 81/236 (34%), Gaps = 20/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V+ + P++ LPE G+ + S Sbjct: 68 TDNHMLACDPVIPLARKQTLPIYWNRLDERARFLPEGTMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190 A G++ R L +L+ M + + LT RE Sbjct: 128 ATGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDSDPKDPLTERE 187 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V V Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSTGHV 243 >gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia cepacia] Length = 239 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189 AR GL+ + + + + L L+ + F + T R Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTQTAR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236 >gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565] gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565] Length = 268 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 86/245 (35%), Gaps = 27/245 (11%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYV----GASHFLLVRWDLFQEQKLDSIVSSDW 82 R LL + R+ L G ++ Q+ ++ + Sbjct: 9 MNRDQLLEYLEHFTSVTD-GNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQC 67 Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY---- 130 P V+ + V++ + P++ L E G+ + Sbjct: 68 PDSWVQAYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRN 127 Query: 131 -CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----- 184 S A G++ R D L E + ++ +N + + Sbjct: 128 GISFPLHGAAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSA 186 Query: 185 ---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V Sbjct: 187 GKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGV 246 Query: 242 RNNIV 246 ++ Sbjct: 247 STGLL 251 >gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 8/221 (3%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92 + + + + ++ +F L R IV ++ V Sbjct: 13 PELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVITNVAERRVGLFIT 72 Query: 93 SEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFD-----VARIRIGLM 145 + K+ V + + H + + N + S F R + Sbjct: 73 TLKEALGTVRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + + + ++ L A + + LT RE E + W SEGKTS E Sbjct: 133 VLSGERQEPDQSEIADMLLDAMRIFDKLYEEILTQEMSGRLTQREQEIVKWTSEGKTSAE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233 >gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 240 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165 VF TL + D SL + + G + PK G++I + R + E G + Sbjct: 99 VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYVNEAGAM 158 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A G++ LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 159 AES-GTREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K R+ A+ +++ Sbjct: 218 QKMEVDDRTQAVINSIKYG 236 >gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 262 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-EQKLDSIVSSDWPFDLVRC 89 + + W + + +G +H+L+ + + V + +P + C Sbjct: 3 QAFSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDC 62 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDV 137 +L+ + P+F + G + S+ Sbjct: 63 YCCDGLLDIDPILKHCRQELVPMFWA--QQGRRARGRTRHFWQRREEHGLCHGLSIPLRY 120 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAY-QANMFKSYDVHWGKDFELTGREV 191 R+R L + F + D +L Y + + + + + +LT RE+ Sbjct: 121 ERLRGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPREL 180 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W S GKTS EI+ IL S TV+ ++ + RK + +R A+ A ++ Sbjct: 181 ECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235 >gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a] Length = 241 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 16/200 (8%) Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFH 114 + F K + S++P V+ + K+ + P +F Sbjct: 44 YGTCSVTPFMRPKTS--IYSNYPEPWVQRYQAQNYALIDPTVKHSKLSSAPILWGNELFR 101 Query: 115 TLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLA 166 P+ + + + + A+ R+GL+ L + + I + + + A Sbjct: 102 ECPQLWSEARDSNLCHGLAQPSFNAQGRVGLLSLARRNKAISAEEFEALKPVTKAFAMAA 161 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + + ++ D E +GRE + L W ++GKTS+EI VI+G+ +TVN + +I R Sbjct: 162 HEKLSELENDDSSLNVQVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQR 221 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K R A++YAV + Sbjct: 222 KIGASNRVQAVSYAVALGYI 241 >gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGNRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V++ + P++ L E G+ + S Sbjct: 68 TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTER 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V ++ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243 >gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 262 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-EQKLDSIVSSDWPFDLVRC 89 + + W + + +G +H+L+ + + V + +P + C Sbjct: 3 QAFSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDC 62 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDV 137 +L+ + P+F + G + S+ Sbjct: 63 YCCDGLLDIDPILKHCRQELVPMFWA--QQGRRARGRTRHFWQRREEHGLCHGLSIPLRY 120 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAY-QANMFKSYDVHWGKDFELTGREV 191 R+R L + F + D +L Y + + + + + +LT RE+ Sbjct: 121 ERLRGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPREL 180 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W S GKTS EI+ IL S TV+ ++ + RK + +R A+ A ++ Sbjct: 181 ECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235 >gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-AAYQA 170 VF TL + + D SL + + G + PK L ++L + L A Sbjct: 89 VFETLRKGASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVA 148 Query: 171 NMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 ++D LT RE E L ++EG+++ I L IS TV N+++SI++ Sbjct: 149 GGNPAHDSALRYIDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQ 208 Query: 227 KTATKTRSGAIAYAVRNN 244 K R+ A+ A++N Sbjct: 209 KMEVDDRTQAVIIAIKNG 226 >gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 84/236 (35%), Gaps = 20/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLTMVTDESRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 L+ ++Q P++ L E G+ + S Sbjct: 68 TLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190 A G++ + R L +L+ + + LT RE Sbjct: 128 AAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERE 187 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 280 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-EQKLDSIVSSDWPFDLVRC 89 + + W + + +G +H+L+ + + V + +P + C Sbjct: 21 QAFSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDC 80 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDV 137 +L+ + P+F + G + S+ Sbjct: 81 YCCDGLLDIDPILKHCRQELVPMFWA--QQGRRARGRTRHFWQRREEHGLCHGLSIPLRY 138 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAY-QANMFKSYDVHWGKDFELTGREV 191 R+R L + F + D +L Y + + + + + +LT RE+ Sbjct: 139 ERLRGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPREL 198 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W S GKTS EI+ IL S TV+ ++ + RK + +R A+ A ++ Sbjct: 199 ECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 253 >gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V++ + P++ L E G+ + S Sbjct: 68 TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTER 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V ++ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243 >gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 240 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 22/240 (9%) Query: 27 PTRSDLLARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSD 81 D R+ + M LT+ +G + FL++ ++ + + ++ Sbjct: 1 MKLEDEFNRIEEVAAGFKTHYEVFKFMKGLTQDLGMTAFLIMTLPTVDFVEIGATKIITN 60 Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------------- 127 WP ++V V++R P F+ E I G Sbjct: 61 WPAEMVDYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGEGKKSTVIDLFRRYGM 119 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFEL 186 + A G M + + + + +I +A + + K Sbjct: 120 EKGAYFPVHDAAGGRGAMSISGSRNFTMLE-MAKILFIATLIYDRLSQLTLNEKHKPIAF 178 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T E++CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+R NI+ Sbjct: 179 TSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli] Length = 242 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 19/236 (8%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-----IVSSDWPF 84 D + R +G HF L L Q+ S ++S ++P Sbjct: 4 RDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPS 63 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCP-----------VFHTLPENITPPAGMDNRYCSL 133 V V + + P + + T D + Sbjct: 64 RWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPI 123 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGRE 190 RI + + + + + L+ A+ A F + +LT RE Sbjct: 124 HEPGGRIFLATVASHQQLTLGNDACVRAYALVTAFHALYTMRFATEQTQIPTAVKLTSRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECLTW++ GK+S EI I+ IS +TVN ++ + M K T +R A A ++ Sbjct: 184 AECLTWVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239 >gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 243 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 17/231 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVRC 89 L A + ++ + + G S + + ++ L +V S P +R Sbjct: 13 LSAELATARTQTAFAQALERTSSAFGFSQVAFLNAPVSEDSMLTPLVIEGSVQP-QFLRD 71 Query: 90 MALSEKDKYYNVLQRPTELFCPVF-HTLPENITPPAGMDNRY------------CSLTFD 136 + + +LQR + P H L +NI+ + + + Sbjct: 72 FDRQQLLRRCPMLQRVRDSVMPRAWHLLEKNISQDMELPRELHALLLSHNCPMGIVIPIN 131 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195 + + + + + L E+ ++ +++ + G L+ RE+E + Sbjct: 132 SSDGQRLVFWFMGNRSSLGQSELNELNMIMLQAHDIYNCIKRNDGSVLHMLSARELEVVR 191 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R ++ Sbjct: 192 WTAQGKTSVEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKLI 242 >gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 35/251 (13%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78 S+++ +S L A + + + ++ G SH L+ ++ L + + Sbjct: 1 MSYMTTSERQSLLSAELATARTRSLFAQALGRVSTAFGLSHATLMHAPSPEDLLLKPLLI 60 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------------------- 119 S P VR + + R + P L + Sbjct: 61 ESSLPVAYVRDFDRAHMMRGCPFGVRLRQSAVPPAWHLNDASNGQAFPAELRALMLRHAI 120 Query: 120 ----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 P D + F R +G IIL A N K Sbjct: 121 PAGVAMPTIAADGQRLVFWFCGERAALGQSETNELAMIILH---------ALDAYNAVKR 171 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ Sbjct: 172 NE--ECAHNALSTRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQ 229 Query: 236 AIAYAVRNNIV 246 +A A+R ++ Sbjct: 230 LVAKAIRLKLI 240 >gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 254 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 9/116 (7%) Query: 140 IRIGLMLLFPKG--RIILRDRLWEIGLLAAYQ-ANMFKSYDVHWG------KDFELTGRE 190 R+G++ L + LRDR+ +A + +++ + + H+ + ++L+ RE Sbjct: 137 GRLGILSLATRDVYSAELRDRIRHAIPIAQFVLSHLVEKLEAHFHVRLEDLQRYKLSERE 196 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W++ GKTS EI ILGI+ T ++ + M+K RS A+A A+++ ++ Sbjct: 197 RECLRWVAAGKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQHGVI 252 >gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEATIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46] Length = 260 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia thailandensis MSMB43] Length = 239 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 +R GL+ + + + + L + ANM S + LT R Sbjct: 120 ASRGVFGLLTIARHTDRLTIAEINHLTLQTNWLANMSHSLMSRFLVPKLAPESGVALTHR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W EGKT+ EI ILGIS TVN ++ +++ K + A+ A+ +V Sbjct: 180 EREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGLV 236 >gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 89/240 (37%), Gaps = 13/240 (5%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78 S+++ +S L + + + ++ G SH L+ ++ L + + Sbjct: 1 MSYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLI 60 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 S P ++ + + R E P L + A + Sbjct: 61 ESSLPAAYIKEFDRAHMMRGCPFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAI 120 Query: 139 RIRIGLMLLF-----------PKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFEL 186 + + + + + + + E+ ++ + + + + L Sbjct: 121 PAGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNAL 180 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R ++ Sbjct: 181 STRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 227 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 18/212 (8%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 ++++Y+ S + +V + QE ++V + P +V + + + Y V Q+P Sbjct: 17 SISDYLELSGYSVVTANDGQEAL--AMVDNYHPDLIVTDIIMPRMNGYELVRRVRQQPAF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161 PV E I + Y F++ + + L + +II + RL Sbjct: 75 RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLERSQIIQSEYRLSH 134 Query: 162 IGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISR 214 L ++ + + LT RE E L ++ G ++ ++ L +S Sbjct: 135 KENLGSFVPSKEVEIPNSLSTHIQQSHLLASLTPREQEVLELLTHGFSNADMGHQLHLSP 194 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV Y++S++RKTAT R+ + +A+++ +V Sbjct: 195 RTVEKYVSSLLRKTATSNRAELVRFAMKHGLV 226 >gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 238 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 90/236 (38%), Gaps = 13/236 (5%) Query: 24 SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDW 82 ++ L + W + + + S+ L++ + L +V S Sbjct: 2 PKTERQARLCRDLSAAIDRPQWLAALQQVMQAFSYSYVTLLKLPSIRNAYALPIVVESSL 61 Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------TPPAGMD-NRYC 131 P +V M + V++R P + +L + T GM Sbjct: 62 PVWVVNAMTRDGELADCPVIKRGASSMMPQYWSLDDKDINCGSLLEVSTLLRGMGITSGL 121 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGRE 190 + + LM ++ + L E+ ++A + + K LT RE Sbjct: 122 LVPVNGMDGNRHLMNFAGDCDVLSQGSLNELCMIALHALEAYDRLCRAGSKLPSPLTKRE 181 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ + W ++GKTS EIA +L IS +TVN Y+ + +RK R+ +A +R ++ Sbjct: 182 LDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGLI 237 >gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 240 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 24/235 (10%) Query: 33 LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87 R+ + M LT+ +G + FL + ++ + + ++WP ++V Sbjct: 7 FNRIEEVAAGFNTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDNVEIGATKIITNWPAEMV 66 Query: 88 RCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMDNRYCS 132 V++R P T+ E Y Sbjct: 67 DYYDAHSLLIDSPVIRRMLRSTSPFNYDVEAINTNRGEGKKSTVIELFFRYGMEKGAYFP 126 Query: 133 LTFDVARIRIGLMLLFPKGR-IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + D A R + + P+ +I +L I L + + + H K E T E+ Sbjct: 127 VH-DAAGGRGAMSISGPRNFSMIEMAKLLFIATLIYDRLSQLTLNEKH--KPIEFTPGEL 183 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +CL + G+ EIA +L ++ N VNN+I S ++K TR+ A+ A+R NI+ Sbjct: 184 DCLRLTAGGRKGSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSALRLNII 238 >gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 233 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 31/231 (13%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLV----------RWDLFQE--QKLDSIVSS 80 + ++ ++ + + +++ A ++ ++ E + L ++ Sbjct: 17 IKKLEKVNSLSDLNNEVNNIAKFLNAKNYAFCVFSTNLNEQESVKIYGELGRALSRLIQD 76 Query: 81 D-----WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 D + V+ + LSE ++ + + +F + F Sbjct: 77 DNLIRTYCQTEVKPLKLSEITNFFELKDSRKQKGFSIFCDT--------------LIIPF 122 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 G ++L + +L++ ++ ++ Y + FK K T RE+ECL Sbjct: 123 KGTLYDFGCLILRTENNKLLKEEHFKSIVIVIYMYDAFKRCKKKSNKTVNFTKREIECLK 182 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKTS EI+ IL I+ TVN +IA+ +RKT + R AIA I+ Sbjct: 183 WATEGKTSWEISKILTITDRTVNYHIANCIRKTNSSNRQQAIAKFYAMGIL 233 >gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4] Length = 260 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ] Length = 260 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L ++ + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLLSVTDGDRLAELIGRFTLGMGYDYYRFALIIPTSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGIL 243 >gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii] Length = 260 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei] Length = 239 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 +R GL+ + + + + L A + ANM S + LT R Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + L W EGKT+ EI IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 180 ERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 230 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 13/228 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90 L A + + + ++ G SH L+ ++ L + + + P +R Sbjct: 2 LSAELAGARTRSLFAQALGRVSSAFGLSHATLMHAPSSEDLLLRPLLIETSLPAAYIREF 61 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF-- 148 + + R E P L + + A + I + + Sbjct: 62 DRAHMMRGCPFGLRLRESAVPPVWHLNDAVNGQAFPAELRALMLRHAIPAGIAMPTITAD 121 Query: 149 ---------PKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWIS 198 + + + + E+ ++ + + + + L+ RE+E + W + Sbjct: 122 GQRLVFWFCGERAALAQSEVNELAMIILHALDAYNAVKRNEECTHNALSIRELEVVRWTA 181 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R ++ Sbjct: 182 QGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 229 >gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYFEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980] Length = 260 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYFEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m] Length = 260 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 20/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTLVTDGNRLAEVIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 L+ ++Q P++ L E G+ + S Sbjct: 68 TLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190 A G++ + R L +L+ + + LT RE Sbjct: 128 AAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERE 187 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30] gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51] gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24] gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 82/236 (34%), Gaps = 20/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190 A G++ R L +L+ + + LT RE Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMCNYIFEAAIRIVRVSLRDDDPQEALTDRE 187 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia] gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp. salmonicida] gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1] gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m] gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 22/234 (9%) Query: 33 LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87 R+ M LT+ +G + FL++ ++ + + ++WP ++V Sbjct: 7 FNRIEEAAAGFNTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKIITNWPAEMV 66 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSL 133 V++R P + + ++ GM+ Sbjct: 67 DYYDSHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFP 126 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVE 192 D A R + + + +L + +I +A + + K T E++ Sbjct: 127 VHDAAGGRGAMSISGSRNFTML--EMAKILFIATLIYDRLSQLTLNEKHKPIAFTSSELD 184 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+R NI+ Sbjct: 185 CLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 17/230 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 ++ AR + + + T+R+ + + F + + + ++P D V+ Sbjct: 15 NIFARTMDMQEFTAVTLRVLREL-RFDFFAYGMCSVTPFMRPR--TCMYGNYPEDWVQRY 71 Query: 91 ALSE------KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIG 143 + K+ V P +F P+ + + + + A+ R+G Sbjct: 72 QAANYAVIDPTVKHSKVSSAPILWSNELFRGCPDLWSEANDSNLCHGLAQPSFNAQGRVG 131 Query: 144 LMLLFPKGRIILRDRLWEIGLLA-AYQA------NMFKSYDVHWGKDFELTGREVECLTW 196 ++ L K I + L+ A+ A + +S + D E +GRE + L W Sbjct: 132 MLSLARKDNPISLQEFEALKLMTKAFAAAIHEKISELESDVRVFNTDVEFSGRECDVLRW 191 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++GKTS+EI VI+G+ +TVN + +I RK R A++YAV + Sbjct: 192 TADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila] gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida] gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 86/236 (36%), Gaps = 20/236 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-----AYQANMFKSYDVHWGKDFE--LTGRE 190 A G++ R L +L+ +QA + + + LT RE Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFQAAIRNVRVSLRDDEPQGALTDRE 187 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638] gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 27/238 (11%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R + R + + T+ + ++ L R + F K+ + S +P + Sbjct: 10 RRNCFLRFQEMGSADEVYEELQRQTQALEFDYYSLCVRHPVPFTRPKIS--IHSSYPAEW 67 Query: 87 VRCM------ALSEKDKYYNVLQRPTELFCPVF------------HTLPENITPPAGMDN 128 + A+ K N LQ +F H L + IT + N Sbjct: 68 ISQYQSENYYAIDPVLKRENFLQGHLPWTDALFADAQALWDGARDHGLRKGITQCLMLPN 127 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + G M+ + + L+ L ++ L + +++ + + + Sbjct: 128 HALGFLSVSRTSQFGKMMDSDEIELRLQ-VLVQMALTTLLR----FEHEMVMPPEMKFSK 182 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA + Sbjct: 183 REKEILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGFI 240 >gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 88/245 (35%), Gaps = 27/245 (11%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYV----GASHFLLVRWDLFQEQKLDSIVSSDW 82 + LL + L R+ L G ++ Q+ ++ + Sbjct: 1 MKQDQLLEYLEHLTTVTD-EDRLAELISRFTLGMGYDYYRFAVIIPMSMQRPKVVLFNQC 59 Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY---- 130 P V+ + ++Q + P++ L E G+ + Sbjct: 60 PDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRN 119 Query: 131 -CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------- 182 S A G++ R D L E + ++ +N + + Sbjct: 120 GISFPLHGAAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDD 178 Query: 183 -DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V Sbjct: 179 PQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGV 238 Query: 242 RNNIV 246 + I+ Sbjct: 239 SSGIL 243 >gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei] gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 17/213 (7%) Query: 49 MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE------KDKYYNV 101 + AL E + + F + + + ++P D V+ + K+ V Sbjct: 31 LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88 Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 P +F P+ + + R+ + + R+G++ L K I Sbjct: 89 SSSPILWSNELFRGCPDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLARKDNPISLQEFE 148 Query: 161 EIGLLA-AYQA------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + ++ A+ A + +S + D E +GRE + L W ++GKTS+EI VI+G+ Sbjct: 149 ALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TVN + +I RK R A++YAV + Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R D+L + + + TE + ++ L R + F ++ S +P Sbjct: 10 RRDMLHQFQSVAAGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAW 67 Query: 87 VRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 + VL+ LF C + Sbjct: 68 MSHYQAENYFAIDPVLRPENFMRGHLPWEDGLFRDAAALWEGARDHGLKKGVTQCLTLPN 127 Query: 137 VARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 A+ + + D L + + A + ++ + + + RE+E Sbjct: 128 HAQGFLSVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV ++ Sbjct: 188 LKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTLVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 ++ ++Q P++ L E G+ + S Sbjct: 68 TVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--------WGKDFELTGR 189 A G++ + R D L E + ++ +N + LT R Sbjct: 128 ATGENGILSFITRERA-SSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia thailandensis MSMB43] Length = 230 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 79/227 (34%), Gaps = 19/227 (8%) Query: 39 LDCTVSWTMRMYALTEYV-------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L T+ + + L E G H +V +VS +P + V Sbjct: 2 LSATLPESRDVRTLIETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYT 61 Query: 92 LSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY---CSLTFDVARIRI 142 S+ V + + P L E D S+ R+ Sbjct: 62 RSDYFAIDPVHRAAFQYSTPFSWNDIATSNLRERHLLMEAEDAGLDNGISIPLHQPLGRV 121 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVECLTWISE 199 L+ L D W L Q N+ LT RE CLTW++ Sbjct: 122 LLVSLSGTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCSPIPPSVHLTDREQMCLTWVAR 181 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GK+S IA +L IS+ TV+ +I + M K T++R+ A A R ++ Sbjct: 182 GKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170] Length = 260 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLTSVTDEDRLAELIGRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] Length = 240 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 19/189 (10%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----------FHTLPENITPP 123 ++I++ ++P + + ++Q F P+ H + E Sbjct: 50 ETIITDNYPASWRQQYDEAGFMHVDPIVQYSMTNFLPIRWSQIPVASNQAHEMFEEARIN 109 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGL---LAAYQANMFKSYD 177 + S+ R G++ + D + L L ++ + Sbjct: 110 GLKEG--FSIPIHGLRGEFGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCH 167 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT RE +CLTW +EGK++ EIA I+ S TV +IA+ +K R AI Sbjct: 168 KDAAPRIELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAI 227 Query: 238 AYAVRNNIV 246 A+ + Sbjct: 228 TKAILGGYI 236 >gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae NTUH-K2044] gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] Length = 240 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R D+L + + + TE + ++ L R + F ++ S +P Sbjct: 10 RRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAG----MDNRYCSLTFD 136 + VL+ + +F P C + Sbjct: 68 MSHYQAENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPN 127 Query: 137 VARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 A+ + + D L + + ++ + + + RE+E Sbjct: 128 HAQGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV ++ Sbjct: 188 LKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 251 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128 + + + + PF MA KD Y+ R ++ F H L + I P G + Sbjct: 81 DPMVRYLAHAQRPFRWREAMAAFRKDAYHR---RMEQMMVDAFGHGLEDGYIFPIHGRNG 137 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 SL+ I + + + + R W + L ++ + D LT Sbjct: 138 ILASLSLAGKPIELSPVEIALL-EAVARKAFWRLLDLKGEA----QALETVLPADTPLTR 192 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ ++ Sbjct: 193 REMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250 >gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 241 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 16/235 (6%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDL 86 ++ L + ++ + + + G SH ++ + L +V + P + Sbjct: 6 RQTLLSTEITAMESREHCAEILRTVAQAFGLSHGSILLAPCATDVHLLPLVMETTLPMEF 65 Query: 87 VRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGMDNRYC----------S 132 + K+ V+++ P + P ++ R Sbjct: 66 GHEFDRHQFVKFCPVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVV 125 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREV 191 F R+ M + + + E+G+LA + + + + L+ RE+ Sbjct: 126 FIFPSLDSRLYFMRFDGDRSPLSQCEVNELGMLAMAVFDTYDRLRRTELMNVDVLSVREL 185 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GKTS EI IL +S +T+N Y+ + M+K R+ +A A+R ++ Sbjct: 186 EVLRWTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240 >gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 240 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R D R L + T+ + ++ L R + F ++ V + +P Sbjct: 10 RRDCFLRFQALTSASEVYQELQRQTQALEFDYYALCLRHPVPFTRPRIS--VHATYPQRW 67 Query: 87 VRCMALSEKDKYYNVL--QRPTELFCP----VFHTLPENITPPAGMDNR----YCSLTFD 136 + VL + + P +F R C + + Sbjct: 68 MAQYQSENYFAIDPVLKPENFIQGHLPWTDELFADAEALWNGARDHGLRKGITQCLMLPN 127 Query: 137 VARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFK-SYDVHWGKDFELTGREVEC 193 A + + + + + L LL ++ + ++ + + + RE E Sbjct: 128 HALGFLSVSCTSVQAGAVTSEELELRLQMLLQMALTSLLRFEDEMVMPPEMKFSKREREI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 188 LKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] Length = 240 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R D+L + + + TE + ++ L R + F ++ S +P Sbjct: 10 RRDMLHQFQSVAAGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAW 67 Query: 87 VRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 + VL+ LF C + Sbjct: 68 MSHYQAENYFAIDPVLRPENFMRGHLPWEDGLFRDAAALWDGARDHGLKKGVTQCLTLPN 127 Query: 137 VARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 A+ + + D L + + A + ++ + + + RE+E Sbjct: 128 HAQGFLSVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV ++ Sbjct: 188 LKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m] Length = 260 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYEYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] Length = 240 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 AR GL+ + + + + + L A + AN+ S + LT R Sbjct: 121 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGKFLVPKLSPAASVTLTKR 180 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L+W SEG+T+ EI L IS TV +I +I+ K + A+ A+ ++ Sbjct: 181 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGLI 237 >gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m] Length = 260 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDEPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLVWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC 11218] Length = 240 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 19/189 (10%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----------FHTLPENITPP 123 +++++ ++P + + ++Q F P+ H + E Sbjct: 50 ETLITDNYPASWRQQYDEAGFMHVDPIVQYSMTNFLPIRWSQIPVASNQAHEMFEEARIN 109 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGL---LAAYQANMFKSYD 177 + S+ R G++ + D + L L ++ + Sbjct: 110 GLKEG--FSIPIHGLRGEFGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCH 167 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT RE +CLTW +EGK++ EIA I+ S TV +IA+ +K R AI Sbjct: 168 KDAAPRIELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAI 227 Query: 238 AYAVRNNIV 246 A+ + Sbjct: 228 TKAILGGYI 236 >gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 239 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 AR GL+ + + + + + L A + AN+ S + LT R Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L+W SEG+T+ EI L IS TV +I +I+ K + A+ A+ ++ Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236 >gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 228 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + E D +L + + G + P I L E LA N Sbjct: 99 FEIVKEGAAGFLLKDVETPTLVQAIQEVNKGNSFIHPT---ITHKLLGEFNRLA---QNS 152 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ ELTGRE E L +++G T+ EI+ L IS TV N++++I+RK Sbjct: 153 PRNIKSDEAVQSELTGREKEILELMAQGYTNKEISKELYISEKTVKNHVSNILRKMDVTD 212 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ A++ +V Sbjct: 213 RTQAVITALKCGVV 226 >gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1] gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1] gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1] Length = 239 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 AR GL+ + + + + + L A + AN+ S + LT R Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L+W SEG+T+ EI L IS TV +I +I+ K + A+ A+ ++ Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236 >gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W S GKTS EIA ILGI+ TVN ++ + RKT + R AIA + N I+ Sbjct: 187 ETECLFWASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNGIL 243 >gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 240 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 24/235 (10%) Query: 33 LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87 R+ + M LT+ +G + FL++ ++ + + ++WP ++V Sbjct: 7 FNRIEEVAAGFNTHYEVFKYMKGLTQDLGMTAFLIMTLPTVDFAEIGATKIITNWPAEMV 66 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRY-----CSL 133 V++R P F+ E I G NRY Sbjct: 67 DYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGEGKKSTVIELFNRYGMEKGAYF 125 Query: 134 TFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A G M + +I +L I L + + + H K E T E+ Sbjct: 126 PVHDAAGGRGAMSISGSRNFSMIEMAKLLFIATLIYDRLSQLTLNEKH--KPIEFTRNEL 183 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +CL + G+ EIA +L ++ N VNN+I S ++K TR+ A+ A+R NI+ Sbjct: 184 DCLRLTAGGRKGAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSALRLNIL 238 >gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 235 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 21/221 (9%) Query: 44 SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103 W + + +G +LL + I+++ +P D ++ + +++ Sbjct: 16 DWERHLRKILRRIGYERYLLSLGPSTTHDPFNRIMTT-YPSDWLKRYKDENFIQVDPIIR 74 Query: 104 RPTELFCPVFHTLPENITPPAGMDNRY--------------CSLTFDVARIRIGLMLLFP 149 F P+F G NR+ L F+ + + Sbjct: 75 HCRHHFAPLFWG--RARLKARGCTNRFWKEREGYGLLRGVSIPLRFNEMAGSLNVAQCVS 132 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDE 205 + D +G+L + + H LT RE E L W GKT+ E Sbjct: 133 DTDELADDLNGPLGMLFMLIPFLLEGSQKHLKTVGEPPSSLTLRESEVLKWTGVGKTTWE 192 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ILG S T+N +IA+ RK + +R A+ A+ ++ Sbjct: 193 MSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQGLI 233 >gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFNSSADGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V++ + P++ L E G+ + S Sbjct: 68 TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTER 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V ++ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKEVSTGLL 243 >gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] Length = 214 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 D+ + +L + + G + P +L L E DV Sbjct: 98 GCDGYILKDSNFDTLKKAIFSVYAGETYIEPSLMPLLNASLAE--------------RDV 143 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 K ELT RE+E L I+ G + EIA L IS TV N++++I +K R+ A Sbjct: 144 LKDKVSELTRRELEVLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAV 203 Query: 239 YAVRNNIV 246 +A++NNI+ Sbjct: 204 FAIKNNII 211 >gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 237 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 20/234 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLV 87 DLL R L C + + F + + ++ + +++P+ Sbjct: 6 DLLLR--KLSCEKDLQTAYRLVLNFFNNQGFEYCAFAAYLGSPDKHTSKVNLNNYPYGWD 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPA--GMDNRYCSLTFDVAR 139 R + ++ + P VF P+ G+ + D Sbjct: 64 RLYEQNGYASNDPLVAHCNQSSLPILWDETVFAHAPKLWRELNRQGLKYGWTQSVHDEQG 123 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKDFELTGREVE 192 L L I + + A + + S + L+ RE+E Sbjct: 124 AHCSLFSLARSHCPIDIEEHYANLGYAIFASQRLHALASKKLSDALAIQPKCHLSPREIE 183 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKT+ E+ IL +S TVN ++ S MRK + A+A A + +++ Sbjct: 184 VLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAKAAQIHVI 237 >gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 240 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 24/238 (10%) Query: 30 SDLLARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPF 84 D R+ + M LT+ +G + FL + ++ + + ++WP Sbjct: 4 EDEFNRIEEVAAGFKTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDIVEIGATKIITNWPA 63 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRY----- 130 ++V V++R P F+ E I G NRY Sbjct: 64 EMVDYYDAHNLMIDSPVIRRMMRSTSP-FNYDVEAINTNRGGGKKSTVIELFNRYGMEKG 122 Query: 131 CSLTFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 A G M + +I +L I L + + + H K E T Sbjct: 123 AYFPVHDAAGGRGSMSISGSRNFSMIEMAKLLFIATLIYDRLSQLTLNEKH--KPIEFTR 180 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E++CL + G+ +EIA +L ++ N VNN+I S+++K TR+ A+ A+R NI+ Sbjct: 181 SELDCLRLTAGGRKGNEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 109 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 46/100 (46%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L P +L + + L+ + F + LT RE E L W +EGKT+ EI Sbjct: 7 LTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTAREREVLCWTAEGKTACEI 66 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IL IS TVN ++ +I+ K + A+ A+ ++ Sbjct: 67 GQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 106 >gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 242 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 17/220 (7%) Query: 41 CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100 S + G S +++ D +++ WP Sbjct: 24 DGPSLIRQFETHIASGGFSAYIMAGLPSPGAGLADLTLANGWPRGWFELYVRENYIAVDP 83 Query: 101 VLQRPTELFCPV--------------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V + P H + + T + L +D I + Sbjct: 84 VPRHGATTVQPFEWSEAPYDRKQNRAAHKVMTHATEFGLVRGYCIPLHYDEGGAVISMAG 143 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 P + + + IG+ Y N +S + LT RE E L W + GKT+ EI Sbjct: 144 DQPDLDPVAKGAMQLIGV---YAHNRIRSLHRPKPQRRLLTSRECEILLWAAHGKTAWEI 200 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++IL I+ TV ++ +K R+ A+A A+ ++ Sbjct: 201 SIILHIAERTVKFHLIEASKKLNAVNRTAAVAKALAFGLI 240 >gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis z3032] gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032] Length = 241 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 16/233 (6%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R ++ R + + + T+ + +F L + + + +P + Sbjct: 10 RREMTTRFQEIQDSGDIYSLLKTETQNMEYDYFALCVRHPVPFTRPKLTLHTTYPEAWLE 69 Query: 89 CMALSEKDKYYNVLQRPTELFCPV------FHTLPE---NITPPAGMDNRY--CSLTFDV 137 VL+ L P+ F E N G+ C + + Sbjct: 70 HYQAENYFVIDPVLKPANYLIGPLSWNDALFAGAAEELWNAARDHGLVKGVTQCVIAPNR 129 Query: 138 ARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 A+ + + P+G + D RL + + + A M + +L+ RE E Sbjct: 130 AQGFLSVSGTSPRGHSMPDDELALRLQHL-VEQSLVAMMRLEDPAATVLEMKLSKREKEI 188 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 189 LQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGLI 241 >gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2] Length = 260 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TDNHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS +IA ILGI+ TVN ++ + RKT + R AIA V I+ Sbjct: 187 ETECLFWASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSRGIL 243 >gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1] Length = 260 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + V++ + P++ L E G+ + S Sbjct: 68 TDNHMLACDPVIRLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDNDPKDPLTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V V Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGVSTGHV 243 >gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila] Length = 260 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 83/232 (35%), Gaps = 22/232 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + T +G ++ Q+ + V +P V+ Sbjct: 8 EYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPRAEVFMQYPDPWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--------WGKDFELTGR 189 A G++ R D L E + ++ +N + LT R Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREHDPHEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238 >gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] Length = 240 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 13/231 (5%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R +L R + + T+++ + L + + + + +P V Sbjct: 10 RRSMLLRFQEMATAEDVYNELQQQTQHLEFDFYALCVRHPVPFTRPKTSLYTTYPKAWVA 69 Query: 89 CMALSEKDKYYNVL--QRPTELFCPVFHTLPENITPPAGMDNRY---CSLTFDVARIRIG 143 VL + ++ P TL + P + +T + Sbjct: 70 HYQSENYFAIDPVLKPENFSQGHLPWSDTLFRDAQPLWDAARNHGLRKGMTQCLMLPNRA 129 Query: 144 LMLLFPKGRIILRDRLW------EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195 L L I RL + LL ++ D+ + + RE E L Sbjct: 130 LGFLSVSRANIRNSRLANDEVELRMQLLVRESLSVLMRLEDDMVMVPEMRFSKREKEILK 189 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRSLPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis] Length = 241 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 17/213 (7%) Query: 49 MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 + AL E + + F + + + ++P D V+ + ++ Sbjct: 31 LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88 Query: 108 LFCPVF---HTLPENITPPAGMDNRYCSLTFDV----ARIRIGLMLLFPKGRII------ 154 P+ + + + A+ R+G++ L K I Sbjct: 89 SSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFE 148 Query: 155 -LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 L+ A + + +S + D E +GRE + L W ++GKTS+EI VI+G+ Sbjct: 149 ALKPVTRAFAAAAHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TVN + +I RK R A++YAV + Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 217 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 11/156 (7%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITP-PAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 + + + + T++ FH E + N Y + + + + Sbjct: 66 QVLRRLKDMDKTTKVIMLTFHEDREYLFETINLGANGYVLKDAESDSLIKAIRDVAMGES 125 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVI 209 I LA+ F D H K+ +LT RE E LT I+EG+ + EIA Sbjct: 126 YIHPS-------LASQLVKEFNRRDDHHDKEPREGKLTKREYEVLTLIAEGQNNKEIASN 178 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV N++++I +K R+ A YA ++NI Sbjct: 179 LFISEKTVKNHVSNIFKKIHVNDRTQAAIYAYKHNI 214 >gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 239 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 2/155 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + + V + Y + + + + Sbjct: 83 GIAATGGVKRAVPGVKIVMLTVSDEENDLFEAIKAGAVGYLLKSIPPHEVADAVRSVHHG 142 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I L+A + + + D LT RE+E L ++EG+ + EIA L Sbjct: 143 QSLISPS--MASKLMAEFASIARGTDDRPRLHTPHLTARELEVLKLVAEGRANREIARKL 200 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 201 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235 >gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 230 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 22/208 (10%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-- 113 +G H +V +VS +P + V ++ + + R + F Sbjct: 26 IGYQHHAIVELSGTSHPASIDVVSLHYPSEWVEHYTRNDYF-TIDPVHRAAFRYSTPFPW 84 Query: 114 -----------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 H L E AG+DN S+ R+ L+ L D W Sbjct: 85 NDIATSNLRERHLLMEA--EDAGLDNG-ISIPLHQPLGRVLLVSLSGTAPTHDADAKWRN 141 Query: 163 GLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L Q N + + + LT RE CLTW++ GK+S IA +L IS+ TV+ Sbjct: 142 AYLLGMQFN-LQLQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVD 200 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 +I + M K T++R+ A A R ++ Sbjct: 201 FHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTTVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P + LPE G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPNYWNRLDERARFLPEGSPDVMGLAAEFRLRHGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A ++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENRILSFITAERA-SSDLLLESSPILSWMSNYIFQAAIRIVRVSLREDEPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia fergusonii B253] Length = 251 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 37/243 (15%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL------------------- 68 R +L+R + + T+ + ++ L R + Sbjct: 21 RRTMLSRFQEMASAEDVFQELQLQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 80 Query: 69 -FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 +Q+ +I P + + L D ++ Q + H L +T + Sbjct: 81 YYQQHNFLAIDPVLKPENFSQG-HLLWDDALFSEAQPLWDAAR--AHGLRRGVTQYLMLS 137 Query: 128 NRYCSL----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 NR I L K ++++R+ L +LA Q M + + + K Sbjct: 138 NRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLN---VLARVQHEMVMTPAMRFSK- 193 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 194 -----RETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAAT 248 Query: 244 NIV 246 I+ Sbjct: 249 GII 251 >gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] Length = 240 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 82/233 (35%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R R L C + T+ + +F L R + F K+ V S +P Sbjct: 10 RRKCFLRFQELTCADEVYQELQQQTQALEFDYFSLCVRHPVPFTRPKIS--VHSSYPDRW 67 Query: 87 VRCMALSEKDKYYNVL--QRPTELFCPVFHTLPENITPPAGMDNRY--------CSLTFD 136 + VL + + P L + G + C + + Sbjct: 68 MAQYKSENYFAVDPVLKPENFIQGHLPWTDELFADAQELWGGAQDHGIRKGITQCLMLPN 127 Query: 137 VARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMF--KSYDVHWGKDFELTGREVEC 193 A + + + I + + + +L ++ + + + RE E Sbjct: 128 HALGFLSVSRTSLRENAIHHEEIELRLQMLVQMALTSLLRFEHETVMPPEMKFSKREREI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 188 LKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 237 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 13/183 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPP---AG 125 ++ S +P D ++ + V+ F P V + +N+ G Sbjct: 54 YLIDSTYPDDWMQHYIDNCYQNIDPVIATARHEFLPYGWGSVGVRNKSQKNMMQEFQDIG 113 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIIL-RDRLWEIGLLAAYQANMFKSYDVHWGK-D 183 + Y ++ V+ + L+ + + I RDR + Y A + + K D Sbjct: 114 FRSGY-AVPLPVSPSMLLLVGMASNDKEINFRDRTILQIAINQYHACYMQITNGGTSKED 172 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE ECL W+++GK + EI+ IL IS NTV ++ +IM+K R A+ A+ Sbjct: 173 CSLSDRERECLLWVAQGKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAINL 232 Query: 244 NIV 246 ++ Sbjct: 233 GLI 235 >gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ATCC 35469] gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC 35469] Length = 251 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 37/243 (15%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL------------------- 68 R +L+R + + T+ + ++ L R + Sbjct: 21 RRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 80 Query: 69 -FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 +Q+ +I P + + L D ++ Q + H L +T + Sbjct: 81 YYQQHNFLAIDPVLKPENFSQG-HLLWDDALFSEAQPLWDAAR--AHGLRRGVTQYLMLS 137 Query: 128 NRYCSL----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 NR I L K ++++R+ L +LA Q M + + + K Sbjct: 138 NRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLN---VLARLQHEMVMTPAMRFSK- 193 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 194 -----RETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAAT 248 Query: 244 NIV 246 I+ Sbjct: 249 GII 251 >gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/215 (23%), Positives = 77/215 (35%), Gaps = 37/215 (17%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R T ++ + +G +F LL+ + + ++ L Sbjct: 10 IDRFTKAKKTSDIQQQLERFSHQMGFDYFRLLIIFPISMQKSH---------VALFNNCP 60 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 S D Y +R PV + P +F Sbjct: 61 TSWFDAYS---ERHYLTQDPVVFLGLKQTQP------------------------IFWNK 93 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 L + + KS EL+ RE ECL W SEGKTS EIA ILG Sbjct: 94 LDCDSPWLPSASYIFNSALQLIKSRPDLMKYLTELSDREKECLFWASEGKTSWEIATILG 153 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TVN ++ + KT +K R+ AIA ++ + I+ Sbjct: 154 ISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 188 >gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 247 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 19/187 (10%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITP---PAGMDN 128 S++P + + ++ V++ + + + I ++ Sbjct: 57 ISNYPDEWFKNYFEEGMQRHDPVVRYCMQNTSAIRWRQLMDLEHYVDAIGEKIMIRASES 116 Query: 129 RYC---SLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDV-----H 179 C S+ I + L L R+ + ++ +F+ Y Sbjct: 117 GLCDGLSIPIKAPSGEIAIFSLASNREEGLNQRINACLPFAQSFGTQVFECYSALMLKLA 176 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 K LT RE E L W EGKT+ EI+ IL +S TV +++S K R A+A Sbjct: 177 QNKQTHLTAREKESLFWACEGKTTWEISKILDVSERTVIFHLSSATSKLGAVNRQHAVAK 236 Query: 240 AVRNNIV 246 A+ + ++ Sbjct: 237 AILSGLI 243 >gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 251 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 32/203 (15%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 + A + L+ + + + + PF MA KD Y+ R ++ F Sbjct: 70 QIYAAKKYALI------DPMVRYLAHAQRPFRWREAMAAFRKDAYHR---RMEQMMVDAF 120 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 G+++ Y +G + L K + EI LL A F Sbjct: 121 GH---------GLEDGYI-FPIHGRSGILGSLSLAGKPIELSP---VEIALLEAVARKAF 167 Query: 174 ----------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++ + D LT RE+E L +++EG TS EI+ +L IS +TV+ Y+ Sbjct: 168 WRLLDLKGEAQALETVLPADTPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNG 227 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 + K K R A+A A R+ ++ Sbjct: 228 LQDKLKAKNRQHAVALAFRHGLI 250 >gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4] gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 250 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 16/208 (7%) Query: 54 EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA-----LSEKDKYYNVLQRPT 106 + +G H + L + + ++ +P + + L + N Sbjct: 41 DLIGFDHAVYGLAKLNHHGCITAYETLNFSYPAEWLDAYRTNNFHLLDPITTENFKNYSL 100 Query: 107 ELFCPVFHT-LPENITPPAGMD----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 + + F+T E A +D + Y + R + + + R+ L Sbjct: 101 QYWKDTFNTYDVEAKFLSAALDFRLVDGYAIGITNSFRTEGCIFSISGPIKKEPRNELV- 159 Query: 162 IGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + LLA + F+ S + +T RE E L WI +GK+S +I+ IL IS TV Sbjct: 160 LNLLAPHLHQAFRQVLSVEKKGKISTTITIREREVLNWIKKGKSSWDISTILAISERTVK 219 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++MRK +R A+A A+ ++ Sbjct: 220 FHVDNVMRKLDAVSRIHAVAVALSVGLI 247 >gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168] gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168] Length = 240 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 86/239 (35%), Gaps = 29/239 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + + + ++ L VR + F ++ S +P Sbjct: 10 RRSMLLRFQEMASAKDVYSELQRQAQLLEFDYYALYVRHPVPFTRPRISFQTS--YPEAW 67 Query: 87 VRCMALSEKDKYYNVL--QRPTELFCP----------------VFHTLPENITPPAGMDN 128 V VL + + P H L + +T + N Sbjct: 68 VSRYQAENYSAIDPVLKPENFIQGHLPWSDDLFNDAQTLWDAARAHGLRKGVTQCVMLPN 127 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELT 187 R V + + + L+ + E + L+ + M + ++ + K Sbjct: 128 RALGFLSVVRASLRSNPIDDDEVELRLQLLVRESLAALSRLEDEMVMAPEMRFSK----- 182 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 183 -REKEILKWTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGLI 240 >gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] Length = 165 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 3/163 (1%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D V LS + P + P + D ++ G Sbjct: 4 DPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATLEEERGG 61 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTS 203 + + I + + LLA+Y D + LT RE E L W++EGKT Sbjct: 62 LTFAGRQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKTD 121 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI ++GISR+ V+ ++ S K +R+ A+A R ++ Sbjct: 122 WEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164 >gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 250 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 2/155 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + R + V + Y + + + + Sbjct: 94 GIAAAGAIKRAVPRTRIVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHNG 153 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I L+ + D LT RE+E L ++EG+ + EIA L Sbjct: 154 QSLISPS--MASKLMVEFATMARGGEDRPRAHAPHLTARELEVLKLVAEGRANREIARKL 211 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 212 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 246 >gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 225 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 7/150 (4%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL---FPKGRIILR 156 ++ + + + + P G R + + I L P I Sbjct: 74 PLIAALQQSNHGIMALMDSHTHPDYGK--RLLLAGYHGDKKAIYLTSFGDRQPSSEEIDA 131 Query: 157 DRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L + + ++Y + + + +LT RE E L W+ GK++ EI+ +L IS Sbjct: 132 LYLLTPHLYMASSYVCDRNIRVETLPAPESQLTTRECELLPWLKLGKSNWEISRLLNISE 191 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 TV ++ +I RK R+ A++ A+ Sbjct: 192 RTVKYHLQNIYRKLDVHNRTHAVSKAIELG 221 >gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii] Length = 260 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTLVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ + D L + + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAEQA-SSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 22/183 (12%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITP 122 +Q +V D + + + + ++ FH E Sbjct: 53 QQLSPDVVLLDISMPKQNGI---QTLRRLKDMDSTIKIIMLTFHEDREYLFETINLGANG 109 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 D SL + + GL ++P L L + + N + Sbjct: 110 YVLKDAESESLIKAIRDVYQGLNYIYPT----LATELVK-------EFNRREVKSQKRNN 158 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE E LT ++EG + EI L IS TV N++++I +K R+ A YA + Sbjct: 159 EDELTRREYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYK 218 Query: 243 NNI 245 +NI Sbjct: 219 HNI 221 >gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii] Length = 260 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLTMVTDEDRLSELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ + D L + + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAEQA-SSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440] Length = 220 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + S V L F+ + + Sbjct: 52 DVVVMDVRMPVLDGIGASRLLAGAGVANPVKVLVVTTFNLDEYVYEALRAGASGFLLKDA 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A++ G+ + ++ + + L+ Y A + + D LT RE+E L Sbjct: 112 PPAQLLHGIRTVATGAALLAPEVTRQ--LVGRYAARIRPAEGS--SGDIPLTPRELEVLR 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EIA L IS+ TV Y++ I+ K + R A+ YA R+ +V Sbjct: 168 LIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218 >gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 229 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + + + + ++ D E IV P ++ + + + ++ Sbjct: 15 FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70 Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 EL+ V H L + +L V + G L PK Sbjct: 71 LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPK 130 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207 + + + E LA + ++V+ L T RE E L +++GK++ I Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N++++I++K R+ A+ A++N Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNNRTQAVVVAIKNG 224 >gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida] Length = 238 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 16/231 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D L R+ ++ W + LT +G S+FL+ + ++ SD+P Sbjct: 7 DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140 V+Q P+ +N P+ + + +L R Sbjct: 67 DAESYAAVDPVVQHCLNANRPLLW-DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRG 125 Query: 141 RIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 G++ L P + L LL Y + LT RE E L Sbjct: 126 EAGMLCLKPSESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQ 185 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKT+ EI++IL + + ++ + +I RK +R A+ A++ + Sbjct: 186 WSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236 >gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ECD227] Length = 240 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 37/243 (15%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL------------------- 68 R +L+R + + T+ + ++ L R + Sbjct: 10 RRTMLSRFQEMASAEDVFQELQLQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 69 Query: 69 -FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 +Q+ +I P + + L D ++ Q + H L +T + Sbjct: 70 YYQQHNFLAIDPVLKPENFSQGH-LLWDDALFSEAQPLWDAAR--AHGLRRGVTQYLMLS 126 Query: 128 NRYCSL----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 NR I L K ++++R+ L +LA Q M + + + K Sbjct: 127 NRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLN---VLARLQHEMVMTPAMRFSK- 182 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA Sbjct: 183 -----RETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAAT 237 Query: 244 NIV 246 I+ Sbjct: 238 GII 240 >gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei DM98] gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 14] gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 91] gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 9] gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei B7210] gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 7894] gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei NCTC 13177] gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 112] gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei BCC215] gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei] gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 230 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 14/204 (6%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-- 113 +G H +V +VS +P + V ++ + + R + F Sbjct: 26 IGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYTRNDYFA-IDPVHRAAFRYSTPFSW 84 Query: 114 -----HTLPENITPPAGMDNRY---CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L E D S+ R+ L+ L D W L Sbjct: 85 NDVATANLRERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYL 144 Query: 166 AAYQANM-FKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 Q N+ F+S LT RE CLTW++ GK+S IA +L IS+ TV+ +I Sbjct: 145 LGMQFNLQFQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIE 204 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + M K T++R+ A A R ++ Sbjct: 205 NAMEKLNTRSRTFAAVKATRQGLI 228 >gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 17/213 (7%) Query: 49 MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE------KDKYYNV 101 + AL E + + F + + + ++P D V+ + K+ V Sbjct: 31 LRALRELRFDFFRYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88 Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 P +F P+ + + R+ + + R+G++ L K I Sbjct: 89 SSSPILASNELFRGCPDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLARKDNPISLQEFE 148 Query: 161 EIGLLA-AYQA------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + ++ A+ A + +S + D E +GRE + L W ++GKTS+EI VI+G+ Sbjct: 149 ALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TVN + +I RK R A YAV + Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQASRYAVAMGYI 241 >gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551] gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551] gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] Length = 236 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 A GL+ L + L + + + AN+ + + + LT RE Sbjct: 121 AHGAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAVLTARE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ ++ Sbjct: 181 REVLCWTGEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 165 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D V LS + P + P + D ++ G Sbjct: 4 DPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATLEEERGG 61 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTS 203 + I + + LLA+Y D + LT RE E L W++EGKT Sbjct: 62 LTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKTD 121 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI ++GISR+ V+ ++ S K +R+ A+A R ++ Sbjct: 122 WEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164 >gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5] gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5] Length = 243 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 17/239 (7%) Query: 25 HLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVG----ASHFLLVRWDLFQEQ-KLDSI 77 +RSDLL + ++ + M++L +G + ++ + +EQ ++ Sbjct: 4 RELSRSDLLLACTAIQQALNIEDQDSMHSLLSTLGNCLDFTCAIICLVEFQEEQPLFQTL 63 Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---------AGMDN 128 V P + + + + V Q+ P+ + +N P G+ + Sbjct: 64 VQHQCPEPWLETYVVRKLWRTDPVFQQVRRSPEPLRWSQTQNRHSPNPALLEASRHGLTD 123 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELT 187 R I L + I + LLA + + D L+ Sbjct: 124 GISIGYGAGNRTLISLAGSRQQIHAISSLACRVLPLLAPLIHSASVRIAHRQDIPDTNLS 183 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGK+++EI++IL ISR+TV ++ I +K R AIA A+R ++ Sbjct: 184 ERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAKALRAGLI 242 >gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] Length = 240 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 13/231 (5%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R +L R + + T+++ + L + + + + +P V Sbjct: 10 RRSMLLRFQEMATAEDVYTELQQQTQHLEFDFYALCVRHPVPFTRPKTSLHTTYPKAWVA 69 Query: 89 CMALSEKDKYYNVL--QRPTELFCPVFHTLPENITPPAGMDNRY---CSLTFDVARIRIG 143 VL + ++ P TL + P + +T + Sbjct: 70 HYQSENYFAIDPVLKPENFSQGHLPWNDTLFRDAQPLWDAARNHGLRKGMTQCLMLPNRA 129 Query: 144 LMLLFPKGRIILRDRLW------EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195 L L I RL + LL ++ D+ + + RE E L Sbjct: 130 LGFLSVSRASIRNSRLASDEVELRMQLLVRESLSVLTRLEDDMVMAPEMRFSKREKEILK 189 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 246 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 13/204 (6%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--- 112 G ++ ++ +++ WP + + + + V++ + F P Sbjct: 41 YGFETIIVTGIPNHKQSFSQMVMAKRWPDEWFKLYTQNNYHRDDPVVRHLRKSFNPFEWS 100 Query: 113 -----FHTLPENITPPAGMDN----RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 P + R + + L + + Sbjct: 101 DAPYSRRNEPRAAAVMDRAADFRMSRGFIVPVHGLAGYEAAVSLGGDHIDLNPRSKPALH 160 Query: 164 LLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+A Y + +S LT RE E L W ++GK++ EI IL I++ T ++A Sbjct: 161 LMAMYAFDRIRSLVSPANDAPPRLTHRECETLNWTAQGKSAWEIGEILQIAQRTAEEHLA 220 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + RK ++ A+A A+R ++ Sbjct: 221 TAARKLGAVNKTHAVAIAIRQKLI 244 >gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 219 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 4/175 (2%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + +V D ++ + + V L F+ + + Sbjct: 48 RLHPDVVVMDVRMPVLDGIGATRLLAGAGVANPVKVLVVTTFNLDEYVYEALRAGASGFL 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A++ G+ + ++ + + L+ Y A + + D + LT RE+ Sbjct: 108 LKDAPPAQLLHGIRTVASGAALLAPEVTRQ--LVGRYAARIRPAEDS--SSEIPLTPREL 163 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I++G ++ EIA L IS+ TV Y++ I+ K + R A+ YA R+ +V Sbjct: 164 EVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218 >gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 236 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 83/233 (35%), Gaps = 14/233 (6%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDL 86 +S L A + + + + G SH L+ ++ L + + S P Sbjct: 3 RQSLLSAELAVAGTRGLFAQALGRVATAFGLSHATLMHAPSPEDLLLKPLLIESSLPPAY 62 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--------LTFDVA 138 VR + + R E P+ L + C Sbjct: 63 VRDFDRANMMRGCPFGLRLRESAVPLAWHLNDARQWSGLSRRTACPDAAPRDTGGRCHAD 122 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWGKDFE----LTGREVEC 193 +++ L R E G A Y +Y+ + L+ RE+E Sbjct: 123 QLQSTAAALVFLFLRRTRRTRPERGQRAGDYHPPALDAYNTVRRNEESAHNALSARELEV 182 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A A+R ++ Sbjct: 183 VRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 235 >gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 264 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 17/233 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 DL+A+ + + L+ +G +F L Q+ D I+ + P V Sbjct: 16 DLIAQFETAADERTIVTLLRELSGRMGFDYFRLALIFPSTIQRPDVIIFNGCPQAWVDTY 75 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR-------------YCSLTFDV 137 S +++ P+ N R +L + Sbjct: 76 TSSGFFAIDPIVKCAMTKSTPILWADVVNDEERCDEQGREMMQLANEYGICDGITLPWHG 135 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKDFELTGREVEC 193 A +GL+ + L + ++ ++F++ L+ RE+E Sbjct: 136 ANGHVGLLSFITSTPRTQQQWLSAVPFISWLSMHIFEAVARVCLAGLSPHDALSLRELEV 195 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGK +IA ILGI+ TV ++ +++ K ++S AI++A++ +V Sbjct: 196 CRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGMV 248 >gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] Length = 239 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + W+ + + +G S L + ++ + ++P Sbjct: 5 DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139 + + + T+ P+F H E + + ++ AR Sbjct: 65 DKAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122 Query: 140 IRIGLMLLFPKGRIIL-RDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGREV 191 +G + L + +R E L A Q+ +++ K LT RE Sbjct: 123 GELGALSLSVEAESRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVNKPVVLTSREK 182 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + GKTS EI+VI S VN ++ +I RK +R A AV ++ Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237 >gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 243 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 18/185 (9%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNR-Y 130 S++ D + + P+ E G + Sbjct: 56 SNYSADWLNKYTAEKLHHVDPTFSHCISKSTPLIWSPKIFSAQKQKEMYEEACGYGVKSG 115 Query: 131 CSLTFDVARIRIGLMLLFPK---GRIILRDRLWEIGLLAAYQANMFKS------YDVHWG 181 +L A+ +G++ + RD + LA ++ + +S Sbjct: 116 VTLPIHGAKGELGIVCFVSDTKPDKRFHRDANHHLPELACFRDFILESSLQFMKPSRQVE 175 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +T RE+ECL W + GK+S EI IL + TVN + ++I RK +T +R AI A+ Sbjct: 176 NPISVTHRELECLKWSASGKSSWEIGHILNCTEATVNFHFSNIRRKFSTTSRQQAIVKAI 235 Query: 242 RNNIV 246 ++ Sbjct: 236 SLGLI 240 >gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 243 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 3/164 (1%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 FD + LS + P L P + D ++ G Sbjct: 81 FDPIVQATLSSTTGFRWSETDPAGLQDPKARQVMNEAVEFGLGDG--FTVPLATLEEERG 138 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKT 202 + + I + + L+A+Y D + LT RE E L W++EGKT Sbjct: 139 GLTFAGRQLDISPGQRGMLTLIASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 198 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI ++GISR+ V+ ++ S K +R+ A+A R ++ Sbjct: 199 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 233 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 35/236 (14%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDL 86 +S L A + + + ++ G SH L+ ++ L + + S P Sbjct: 6 RQSLLSAELAVAGTRGLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAY 65 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-----------------------TPP 123 VR + + R E P+ L + + P Sbjct: 66 VRDFDRANMMRGCPFGLRLRESAVPLAWHLNDAVNGQAFPAELRALMLHHAIPAGVAMPT 125 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 +D R F R +G + IIL L AY VH Sbjct: 126 IAVDGRRLVFWFCGERAALGQSEVNELAIIILH-------ALDAYNTVRRNEESVHNA-- 176 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A Sbjct: 177 --LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 230 >gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 240 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDWPFDL 86 RS++ + L + TE +G +F L+ F ++ + S +P Sbjct: 10 RSEVKQQFQALMACSDLKPLLQQFTESLGFDYFAFLIQHPVPFSRPRIH--LHSTYPKLW 67 Query: 87 VRCMA----------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 V+ LS + L E+F + E ++ + Sbjct: 68 VKRYEKQNYYAVDPVLSLCQRPGRGLMWTEEMFAGAGNLWREAREYGLQSGFSCSAMAPN 127 Query: 137 VARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFK--SYDVHWGKDFELTGREVEC 193 A + + P + + L ++ LLA + + S D E + RE+E Sbjct: 128 RALGILSISSQQPIPLKLCHEELEVKLHLLAELSLDTLERFSDDAMMVLKKEFSQRELEI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W EGKT+ EI++IL IS +TVN + ++ ++ ++ YA ++ Sbjct: 188 LKWTGEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240 >gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 221 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 48/96 (50%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + I + E L M + + ELT RE E L I++GK++ EIA L Sbjct: 112 AKAIRQTAKGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATEL 171 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A YA+++ +V Sbjct: 172 FITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207 >gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] Length = 233 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 10/221 (4%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R + RMI + M L+ Y+G L V Q+ + D P ++ Sbjct: 6 RYQRMLRMIKVLIVDDHEMVRLGLSTYIGVQPDLEVVDQAENGQEGVEMALKDRPDIILM 65 Query: 89 CMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + + KD + + + + ++ M+ S A Sbjct: 66 DLVMPVKDGIEATKEILKAWPQARIIILTSFIDDAKVYPAMEAGAASYILKTATAE---- 121 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + I + E L M + + ELT RE E L I++GK++ E Sbjct: 122 ---EIAKAIRQTASGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQE 178 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L I+ TV ++++I+ K + R+ A YA+++ +V Sbjct: 179 IATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 219 >gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] Length = 210 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + ++ PV + P N + A G+ + Sbjct: 29 LMVSNYPARWQERYIEARFANIDGAVKAALGSDLPVTWSAPANASKSAFWAEALSFGIAH 88 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L I + + + AN+ + + D Sbjct: 89 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 147 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 148 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 207 Query: 244 NIV 246 ++ Sbjct: 208 GML 210 >gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSAIL 243 >gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 236 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + ++ PV + P N + A G+ + Sbjct: 55 LMVSNYPARWQERYIEARFANIDGAVKAALGSDLPVTWSAPANASKSAFWAEALSFGIAH 114 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L I + + + AN+ + + D Sbjct: 115 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233 Query: 244 NIV 246 ++ Sbjct: 234 GML 236 >gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 242 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 23/234 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ W + L E G L+ + D+ V S + + R Sbjct: 9 MAPLLDAADEAEWFSAVAGLAETWGFDRLLVAMLPRPTIRLEDAYVRSTYAPEWRRTYDE 68 Query: 93 SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132 + P+ H L +T P N+ Sbjct: 69 QGLVHIDPTVAHCATRSTPLVWSPEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + V ++ L ++ Q ++ K LT RE E Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLNTHAQTLLPK---LTPRERE 185 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 186 CLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239 >gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida] Length = 238 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 16/231 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D L R+ ++ W + LT +G S+FL+ + ++ SD+P Sbjct: 7 DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140 V+Q P+ +N P+ + + +L R Sbjct: 67 DAESYAAVDPVVQHCLNANRPLLW-DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRG 125 Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 G++ L P+ + + L LL Y + LT RE E L Sbjct: 126 EAGMLCLKPFESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQ 185 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKT+ EI++IL + + ++ + +I RK +R A+ A++ + Sbjct: 186 WSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236 >gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 13/216 (6%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R++ D + + E + ++ + +E + S P ++ + + Sbjct: 5 RVLIADDHTMVRQGLKQILE-LEKDMAVIAQAPNGEEAIRLAKECS--PDVILMDINMPG 61 Query: 95 KDKYYNVLQR-----PTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLLF 148 + + + P+ + H E + M Y D + + + Sbjct: 62 MNGLQAIKEMKADNIPSRIIVLTIHEDREYLFKTLQMGAEGYVLKDADPVVLVEAIRSVN 121 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 I + E+ + N +D ++ LT REVE L I+EG + EIA Sbjct: 122 RGQSYIQANMTREL----VREFNKITLHDKSKSEESNLTAREVEVLELIAEGMINKEIAK 177 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N++++I RK R+ A YA ++N Sbjct: 178 RLYISEKTVKNHVSNIFRKLNVSDRTQAAIYAFKHN 213 >gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 240 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 29/239 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDFYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 L F + LR +L L+A D+ + + Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 245 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 19/234 (8%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R L + L R+ ++++Y+ S + ++ + QE ++V P +V Sbjct: 14 RGVLSMPLTILVVDDDLGTRL-SISDYLELSGYSVITANDGQEAL--TMVEVYHPDLIVT 70 Query: 89 CMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARI 140 + + + Y V Q+P PV E I + Y F++ + Sbjct: 71 DIVMPRMNGYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEEL 130 Query: 141 RIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192 + L + +II + + L + S H K LT RE E Sbjct: 131 AAAIHNLLERSQIIQSEYRFSQKDNSGSPLPSKIVESHHSVFTHVEKSHLLSSLTPREQE 190 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ EI L +S TV Y++S++RKT T R+ + +A+ + +V Sbjct: 191 VLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGLV 244 >gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 245 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 9/181 (4%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNR 129 ++ ++ D + + ++ K + H E + + Sbjct: 46 DELSPDVILVDLSLPGMNGLEVARALKRRQPQ---AGVIILTMHQDDEQLFNAIRAGASA 102 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKDFE 185 YC+ + ++ I ++ +G ++ + + +A+ + F+ G Sbjct: 103 YCTKDIEPEQL-IDVITRVARGEYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSP 161 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EIA L IS TV N+I SI+RK A R+ A+ YA+R+ Sbjct: 162 LTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGW 221 Query: 246 V 246 + Sbjct: 222 I 222 >gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 17/213 (7%) Query: 49 MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 + AL E + + F + + + ++P D V+ + ++ Sbjct: 31 LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88 Query: 108 LFCPVF---HTLPENITPPAGMDNRYCSLTFDV----ARIRIGLMLLFPKGRII------ 154 P+ + + + A+ R+G++ L K I Sbjct: 89 SSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFE 148 Query: 155 -LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 L+ A + + +S + E +GRE + L W ++GKTS+EI VI+G+ Sbjct: 149 ALKPVTRAFAAAAHEKISELESDVRVFNTGVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TVN + +I RK R A++YAV + Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 242 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 72/234 (30%), Gaps = 23/234 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ W + L E G L+ + D+ + S + R Sbjct: 9 MAPLLNAADEAEWFSAVAKLAETWGFDRLLIAMLPRPTMRLEDAYIRSTYAPAWRRTYDE 68 Query: 93 SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132 + P+ H L +T P N+ Sbjct: 69 QGLVHIDPTVAHCATRSTPLVWSPEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + V ++ L ++ Q ++ K LT RE E Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHAQSLLPK---LTPRERE 185 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 186 CLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239 >gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii ATCC BAA-894] gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894] Length = 241 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 14/232 (6%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R ++ R + + + T+ + +F L + + + +P + Sbjct: 10 RREMTTRFQEIQDSSDIYSLLKTETQNMEYDYFALCVRHPVPFTRPKLTLHTTYPEAWLE 69 Query: 89 CMALSEKDKYYNVLQRPTELFCPV------FHTLPE---NITPPAGMDNRY--CSLTFDV 137 VL+ L P+ F E N G+ C + + Sbjct: 70 HYQAENYYVIDPVLKPANYLVGPLSWNDALFAGAAEELWNAARDHGLVKGVTQCVIAPNR 129 Query: 138 ARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 A+ + + P+G + D L L+ M + D + +L+ RE E L Sbjct: 130 AQGFLSVSGTSPRGHSMADDELALRLQHLVEQSLVTMMRLEDPAATVLEMKLSKREKEIL 189 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 190 QWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGLI 241 >gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 221 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 48/96 (50%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + I + E L M + + ELT RE E L I++GK++ EIA L Sbjct: 112 AKAIRQTASGERVLEPQVTTKMMNRMNHPQSQYDELTNREREVLQLIAQGKSNQEIATEL 171 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A YA+++ +V Sbjct: 172 FITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207 >gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 240 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAKAMWDAAQRFGLRRGVTQCVM 124 Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 L F + LR +L L+A D+ + + Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum CFBP2957] gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum CFBP2957] Length = 236 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 A GL+ L + L ++ + + AN+ + + + LT RE Sbjct: 121 AHGAFGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTARE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ ++ Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 240 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 23/236 (9%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 147 LFPKGR---IILRDRLW-----------EIGLLAAYQANMFKS--YDVHWGKDFELTGRE 190 L + I R L + LLA + D+ + + RE Sbjct: 125 LPNRALGFLSISRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter winogradskyi Nb-255] Length = 241 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 24/234 (10%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLVR 88 +AR+ + + +G SH L + EQ++ ++V WP Sbjct: 12 FIARVDKASTPAEIADAVVDVARPLGFSHVLAGIIPIPGMTAEQQISNVVLHRWPKAWSE 71 Query: 89 CM----------------ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +E + + P + E G Sbjct: 72 RYFTKGYLFDDPTIQRVNTSTEPFLWSELEPTYRNTPAPT-RVMGEAREFNLGCGFTVPM 130 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 +T + L + ILR +L I + A +A + LT RE++ Sbjct: 131 ITLNGQTAGFSLASERAEVPSILRGQLQLIAMYAFARA----LGQKYKPAPVNLTPREMD 186 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W++EGK+ EI+VIL +S + V+ + K R+ +A A+R+N++ Sbjct: 187 ILQWMAEGKSDWEISVILKVSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLI 240 >gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 234 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147 +S + + +R + V ++ + + + YC+ D A + + ++ Sbjct: 61 GMSGLELCRVLKRRHPQAAIVVLTMHEDDEQLFSSIRVGASAYCTKDIDPAEL-VTVIRR 119 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKDFELTGREVECLTWISEGKTS 203 +G ++ + + +A+ + F+ +V G LT REVE L ++ G ++ Sbjct: 120 VARGEYLINENVLSRPFVASRVLDQFRELAQIDEVSSGVFSPLTPREVEILDCVARGNSN 179 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA +L IS TV N+I SI+RK A R+ A+ YA+R+ + Sbjct: 180 KEIARLLNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGWI 222 >gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHLTLVTDGNRLAEVIGRFTLGMGYDYYRFALILPTSMQRRKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 ++ ++Q P++ L E G+ + S Sbjct: 68 TVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGR 189 A G++ + R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITRERA-SSDLLLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEALTER 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W S+GKTS EIA ILGI+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFWASDGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKRVSSGIL 243 >gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 254 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 18/230 (7%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 + + R+ ++ L ++ L Q+ D + + P + Sbjct: 7 PQEEQHFRIQNCKTPQMLANQLTILCAANNFEYYQLCLTLRRGLQQTDLTLLTQTPDNWA 66 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVF----------HTLPENITPPAGMDNRYCSLTFDV 137 A + + ++ QR P+F + LP + GM+ ++ Sbjct: 67 EHYAKNNTIQNDSLYQRAQTQSRPLFWQSEAKPEHENFLPMDCWRQFGMEEG-IAVPLHG 125 Query: 138 ARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 G L + +R + + + L ++ + + L+GRE ECL W Sbjct: 126 PAGFCGYFALSRHKKEPIRLQDFFHLSYLGHILQE--QAIQLFSPEQSNLSGREKECLFW 183 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +SEGKTS EIA ILGI+ TVN ++ + +RK+ K R +A NI+ Sbjct: 184 VSEGKTSWEIAQILGITERTVNFHLNNAIRKSGCKNRYQTVAK----NII 229 >gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032] gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032] Length = 229 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + + + + ++ D E IV P ++ + + + ++ Sbjct: 15 FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70 Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 EL+ V H L + +L V + G L PK Sbjct: 71 LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPK 130 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207 + + + E LA + ++V+ L T RE E L +++GK++ I Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N++++I++K R+ A+ A++N Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 224 >gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct] Length = 240 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + W+ + + +G S L + ++ + ++P Sbjct: 5 DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139 + + + T+ P+F H E + + ++ AR Sbjct: 65 DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122 Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREV 191 +G + L + + L + +L Y +++ K LT RE Sbjct: 123 GELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREK 182 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + GKTS EI+VI S VN ++ +I RK +R A AV ++ Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237 >gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense] Length = 275 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 84/245 (34%), Gaps = 17/245 (6%) Query: 19 RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDS 76 + ++ + L + L + + E G +L + + + Sbjct: 27 SEASIAAMSGLDATLEEIGQLGDAEKIPALLQRIAERYGLKTVAYLGTGTLDRRVPRQEP 86 Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----FHTLPENITPPAGMDNRY-- 130 ++ +P + V +Q P+ F ++ G + + Sbjct: 87 FIAVTYPPEWVERYRARGYINIDPAIQIGLRRLLPIDWDEFGKAEGDLRQFFGEASEFGL 146 Query: 131 --CSLTFDVARIRIGLMLLFPKGRIILRDRLW-------EIGLLAAYQANMFKSYDVHWG 181 ++F V L R+ W ++AA+ D + Sbjct: 147 GLRGISFPVHGCGGDRALFSVTADFSKREWHWARRTAFRHFPIIAAHLHEAVLRTDGVFR 206 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+ECL W SEGKT E VILG+S +TV Y+ S K + + A + A Sbjct: 207 SQPRLSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLAT 266 Query: 242 RNNIV 246 ++ ++ Sbjct: 267 KSGLL 271 >gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 2/155 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + R + V + Y + + + + Sbjct: 57 GIAAAGAIKRAVPRTRIVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHNG 116 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I L+ + + D LT RE+E L ++EG+ + EIA L Sbjct: 117 QSLISPS--MASKLMVEFATMARGTEDRPRVNAPHLTARELEVLKLVAEGRANREIARKL 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 175 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 209 >gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 238 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 2/155 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + R + V + Y + + + + Sbjct: 82 GIAAAGAIKRAVPRTRIVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHNG 141 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I L+ + + D LT RE+E L ++EG+ + EIA L Sbjct: 142 QSLISPS--MASKLMVEFATMARGTEDRPRAHAPHLTARELEVLKLVAEGRANREIARKL 199 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 200 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 234 >gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida] Length = 238 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 84/231 (36%), Gaps = 16/231 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D L R+ ++ W + LT +G S+FL+ + + ++ SD+P Sbjct: 7 DELLRLNEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQEVLIYSDYPDAWRTRY 66 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140 V+Q + +N P+ + + +L R Sbjct: 67 DAESYAAVDPVVQHCLNANRALLW-DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRG 125 Query: 141 RIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 G++ L P + L LL Y + LT RE E L Sbjct: 126 EAGMLCLKPSESGPQATATMIESLPTATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQ 185 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKT+ EI++IL + + ++ + +I RK +R A+ A++ + Sbjct: 186 WSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236 >gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1710b] gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] Length = 394 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ C S + +G +F R + + +P + Sbjct: 166 FNEILNATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 223 Query: 93 SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143 ++ V+Q P ++H + M + S I Sbjct: 224 ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 283 Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195 ++ + ILR L + A M + D + +LT RE E L Sbjct: 284 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 343 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A ++ Sbjct: 344 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 394 >gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 6/172 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134 +V D ++ +A + + P ++ L E + + + Sbjct: 52 DVVVMDIRMPVLDGIAATRLLA-GAGVPHPVKVLVVTTFNLDEYVYEALRAGASGFLLKD 110 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 R+ G+ + ++ D + L+ Y A + + D LT RE+E L Sbjct: 111 APPDRLLHGIRTVAAGAALLDPDVTRQ--LVGRYAARIRPTGGTD--PDIPLTPRELEVL 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+EG ++ EIA L ISR TV +++ I+ K + R A+ YA R +V Sbjct: 167 RLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVYAYRQGLV 218 >gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 221 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 48/96 (50%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + I + E L M + + ELT RE E L I++GK++ EIA L Sbjct: 112 AKAIRQTASGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATEL 171 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A YA+++ +V Sbjct: 172 FITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207 >gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208] Length = 229 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + + + + ++ D E IV P ++ + + + ++ Sbjct: 15 FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70 Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 EL+ V H L + +L V + G L PK Sbjct: 71 LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207 + + + E LA + ++V+ L T RE E L +++GK++ I Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N++++I++K R+ A+ A++N Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 224 >gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1] gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18] gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] Length = 239 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 84/235 (35%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + W+ + + +G S L + ++ + ++P Sbjct: 5 DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139 + + + T+ P+F H E + + ++ AR Sbjct: 65 DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122 Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGREV 191 +G + L + + L + +L Y Q+ +++ K LT RE Sbjct: 123 GELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREK 182 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + GKTS EI+VI S VN ++ +I RK +R A AV ++ Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237 >gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 84/235 (35%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + W+ + + +G S L + ++ + ++P Sbjct: 5 DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139 + + + T+ P+F H E + + ++ AR Sbjct: 65 DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122 Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGREV 191 +G + L + + L + +L Y Q+ +++ K LT RE Sbjct: 123 GELGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREK 182 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + GKTS EI+VI S VN ++ +I RK +R A AV ++ Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237 >gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 240 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 31/240 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFH-------------------TLPENITPPAGMD 127 V VL +P H L +T + Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHWDDVLFHEEQAMWDAAQRFGLRRGVTQCVMLP 126 Query: 128 NRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 NR L+F + +R + + L ++ +M + ++ + K Sbjct: 127 NRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSK---- 182 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 183 --REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 240 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDMLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 L F + LR +L L+A D+ + + Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 240 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 31/240 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFH-------------------TLPENITPPAGMD 127 V VL +P H L +T + Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLP 126 Query: 128 NRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 NR L+F + +R + + L ++ +M + ++ + K Sbjct: 127 NRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSK---- 182 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 183 --REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 240 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 31/240 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPQAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFH-------------------TLPENITPPAGMD 127 V VL +P H L +T + Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLP 126 Query: 128 NRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 NR L+F + +R + + L ++ +M + ++ + K Sbjct: 127 NRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSK---- 182 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 183 --REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila] Length = 260 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TV ++ + RKT + TR AIA V + I+ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSGIL 243 >gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] Length = 234 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + ++ PV + P N + A G+ + Sbjct: 53 LMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 112 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L I + + + AN+ + + D Sbjct: 113 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 171 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 172 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 231 Query: 244 NIV 246 ++ Sbjct: 232 GML 234 >gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum V4] gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum V4] Length = 251 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 46/99 (46%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 P+ IL + + L ++ + LT RE+E L WI +GKT+ EI+ Sbjct: 151 SPRHETILNGLKYPLHLALLNCSHPQEVEKPAKESPQALTARELEILKWIMDGKTNWEIS 210 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IL IS TV ++ +I K + R A+A A ++ Sbjct: 211 CILKISEATVKFHLKNIFLKLDVQNRCQAVATAFHRRLL 249 >gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42] gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168] gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642] gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY] gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5] gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName: Full=Protease production enhancer protein gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis] gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis] gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis] gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis subsp. subtilis str. 168] gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens FZB42] gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42] gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis] gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5] gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens LL3] Length = 229 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + + + + ++ D E IV P ++ + + + ++ Sbjct: 15 FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70 Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 EL+ V H L + +L V + G L PK Sbjct: 71 LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207 + + + E LA + ++V+ L T RE E L +++GK++ I Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N++++I++K R+ A+ A++N Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 224 >gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 19/234 (8%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R L + L R+ ++++Y+ S + ++ + QE ++V + P +V Sbjct: 14 RGVLSMPLTILVVDDDLGTRL-SISDYLELSGYSVITANDGQEAL--TMVEAYHPDLIVT 70 Query: 89 CMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARI 140 + + + Y V Q+P PV E I + Y F++ + Sbjct: 71 DIVMPRMNGYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEEL 130 Query: 141 RIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192 + L + +II + + L + S H K LT RE E Sbjct: 131 AAAIRNLLERSQIIQSEYRFSQKDNLGSPLPSKIVESHHSVFTHVEKSHLLSSLTPREQE 190 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ EI L +S TV Y++S++RKT T R+ + +A+ + +V Sbjct: 191 VLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGLV 244 >gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 236 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + ++ PV + P N + A G+ + Sbjct: 55 LMVSNYPARWQERYIEARFANVDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 114 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L I + + + AN+ + + D Sbjct: 115 GWSSASR-GADGAIGVLSLSRTQGPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233 Query: 244 NIV 246 ++ Sbjct: 234 GML 236 >gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 237 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 11/211 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + ++ + + E VGA+ E+ +V D +R + Sbjct: 22 VREGLTMVLGLMPELEVVGAASDG-AEAVALAERLDPDVVLMD-----LRMPRCDGVEAT 75 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + +R + V T ++ + + Y + IR L + I Sbjct: 76 RLLRERRPGVRVVVLTTYSDDRSVLDALRAGARGYLTKDAGGPEIREALRRVLDDRAAID 135 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + LL A + V + LT RE E LT ++EG ++ EIA L +S Sbjct: 136 PA--VQHHLLEALAGGRPEPVPVAPQRPAGLTAREAEVLTLVAEGLSNAEIARRLVVSEG 193 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++ ++ K + R+ A+A+A RN +V Sbjct: 194 TVKSHMNHLLAKIDARDRAQAVAFAYRNGLV 224 >gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 234 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ W + L E G L+ + D+ V S + R Sbjct: 1 MAPLLDAADEAEWFGAIAGLAETWGFDKLLIAMLPRPTIRLEDAYVRSTYSPTWRRTYDE 60 Query: 93 SEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 + P +F T P+ +L G Sbjct: 61 QGLVHIDPTVAHCATRATPLIWSPDIFKTAPQLSMYEEARAHGLRSGITLPIHGPNQEAG 120 Query: 144 LMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFE-----LTGREVECL 194 +M F + I + L + + + H + LT RE ECL Sbjct: 121 MM-CFVNDNNPNDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECL 179 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 180 KWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 231 >gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum CMR15] Length = 236 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 A GL+ L + L ++ + AN+ + + LT RE Sbjct: 121 AHGAFGLLTLARGADPLSAAELEQLSATTNWLANLAHALMSPFLMPKLVPESSAALTARE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ ++ Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236 >gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis] Length = 234 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 17/231 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ ++ W + L G S LL + D+ V S++ + Sbjct: 1 MSPILAASDETQWFDAVAGLAGSWGFSQVLLAILPRPGMRLEDAYVRSNYASSWRQAYTD 60 Query: 93 SEKDKYYNVLQRPTELFCPV------FHTLP-ENITPPAGMDNRYCSLTFDVARIRIGLM 145 + T+ P+ F T P +++ A +T + R Sbjct: 61 QGFAYIDPTVSHCTKHSSPLVWSPDLFATTPQKSMYEEASAHGLRAGVTLPIHGPRQEAG 120 Query: 146 LLFPKGRIILRDRLWE--------IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195 +L D+ W+ + L+ + + + + +LT RE ECL Sbjct: 121 MLCFVNDSNPNDKFWQHIDTALPNLVLMRDLVIDTSQRHLSAHAQTLIPKLTPRERECLK 180 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 181 WTALGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIATQLGLI 231 >gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 240 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 L F + LR +L L+A D+ + + Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter intermedius] Length = 236 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 14/229 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTE---YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLLA++ L+ + + + VG H +V + ++ K + I +P + V Sbjct: 7 DLLAKLHDLENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFI-HVGYPTEWV 65 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRYCSLTFDVA 138 + ++++ + P F +NI + ++ Sbjct: 66 NFYIENNYIVSDPIIKKSRFMSHPYFWHEIKNINKAEKKIIRDVSEFGIKKGLTIPVHTH 125 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWI 197 I + + I R+ + L+ + +K D LT RE ECLTW Sbjct: 126 DRVIYAICFAFTDKNIDREIELYLRALSNFFITGYKKLDEPADMSLPILTPREKECLTWT 185 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++GK+S E +I+G+S TVN +I + + K R + A+ ++ Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234 >gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes] Length = 236 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 14/229 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTE---YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLLA++ L+ + + + VG H +V + ++ K + I +P + V Sbjct: 7 DLLAKLHDLENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFI-HVGYPTEWV 65 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRYCSLTFDVA 138 + ++++ + P F NI + ++ Sbjct: 66 NFYIENNYIVSDPIIKKSRFMSHPYFWHEIRNINKSEKKIIRDVSEFGIKKGLTIPVHTH 125 Query: 139 RIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 I + + + ++ L+ L + A K + LT RE ECL W Sbjct: 126 DRLIYAICFAFTDKNVDQEIELYLRALSNFFIAGYKKLDEPTDMSPPILTPREKECLRWT 185 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++GK+S E +I+G+S TVN +I + + K R + A+ ++ Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234 >gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 235 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 17/232 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + W + + +G +LL F + + + + +P D ++C Sbjct: 3 DDFSCLAKFLDCRDWESHLRKVLCRLGYKTYLL-SIGGFTTNEPSNRIITTYPLDWLKCY 61 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140 +++ F P+F + ++ S+ + Sbjct: 62 EDENFILIDPIVKHCRRHFMPLFWGGARRRARGRSKEFWRARERHGLSQGVSIPLRCREM 121 Query: 141 RIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194 + P + G+L + + H E LT RE E L Sbjct: 122 LGSFNVAHPVDSNEEFDDEVNVTFGVLFMLVPFLLEGSQRHLKAPGEQSCSLTMRETEVL 181 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W GKT+ EI+ ILG S TVN +IA+ RK R A+ A+ + Sbjct: 182 KWSGAGKTTWEISRILGCSERTVNFHIANASRKLGASNRLQAVGMALAQEFI 233 >gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] Length = 210 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + ++ PV + P N + A G+ + Sbjct: 29 LMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 88 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L I + + + AN+ + + D Sbjct: 89 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 147 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 148 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 207 Query: 244 NIV 246 ++ Sbjct: 208 GML 210 >gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei] gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 236 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + ++ PV + P N + A G+ + Sbjct: 55 LMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 114 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L I + + + AN+ + + D Sbjct: 115 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233 Query: 244 NIV 246 ++ Sbjct: 234 GML 236 >gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae] Length = 234 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 25/235 (10%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ ++ +W + L G S +L + D+ + +++ + Sbjct: 1 MSPVLDAPEEAAWFDAVTKLASSWGFSQLMLAILPRPGMRLEDAFIRTNYSAAWRQTYND 60 Query: 93 SEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIR 141 + + T P+ ++ E +L R Sbjct: 61 HGMAYFDPTVTHCTTRSSPLIWSPELFATEQQQSMYEEARAYGLRAG--ITLPIHGPRQE 118 Query: 142 IGLMLLFPKGRIILRDRLWE----------IGLLAAYQANMFKSYDVHWGKDFELTGREV 191 +G++ D W+ + + D +LT RE Sbjct: 119 VGMLCFV--NDASPSDGFWDDVNRALPNLVLLRDLVLDTSHRHLTDHVQSLIPKLTPREK 176 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ECL W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 177 ECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVIATQMGLI 231 >gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22] gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22] Length = 240 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAAYQA 170 H L +T + NR + + IL D L ++ + + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVCESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 227 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 86/212 (40%), Gaps = 18/212 (8%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 ++++Y+ S + ++ + QE +V P +V + + + + Y V Q+ Sbjct: 17 SVSDYLELSGYSVITANDGQEAL--FMVDEYNPDLIVTDIIMPQMNGYELVRRVRQQAMF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161 PV E I + Y F++ + + L + +II + R Sbjct: 75 RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLERSQIIQSEYRFSH 134 Query: 162 IGLLA-------AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L N + LT RE E L ++ G ++ ++ L +S Sbjct: 135 KESLGISGLTKPGDAHNSLSTQIQTSHLHSSLTHREQEVLELLTHGLSNADMGHQLHLSP 194 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV Y++S++RKT+T R+ + +A+++ +V Sbjct: 195 RTVEKYVSSLLRKTSTSNRAELVRFAMKHGLV 226 >gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 236 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 20/231 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 L + + C + + ++ +G H + L R L +++ +++P Sbjct: 9 LQALQSIQCAHQLFQTILSFSKELGFDHCAYGL-RMPL-PLTNPKTLMFNNYPTAWQAQY 66 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA--------RIRI 142 +Q P+ T + +P + + CS V + Sbjct: 67 QAKNYLAIDPTVQHAMRSLLPIIWTD-DLFSPASDLWEEACSFGLRVGWAQSSRDFNGFV 125 Query: 143 GLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLT 195 G++ L I L +A + + + + L+ RE+E L Sbjct: 126 GMLTLARSNEPITEIELDANKFKMAWLTQVAHLGMSRCLTPKLMQEVNVTLSNREIEVLR 185 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W ++GKTS EI+ IL I+ TVN +I +++ K ++ A A ++ Sbjct: 186 WTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAAMLGLL 236 >gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 256 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 85/233 (36%), Gaps = 21/233 (9%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLV--- 87 L + R ++ + AS F L E+ +L SD+P V Sbjct: 26 LSSETHHAVTIPDAVRRCRWISVDINASAFGLYFVSPSPERARLVPCFDSDYPGIAVATK 85 Query: 88 -----RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-----PPAGMDNRYCSLTFDV 137 + + T+ + N+ P + Sbjct: 86 FIAGANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHA 145 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELTGREVEC 193 R + GL++ + +D L+EI L A A + S G+ ++ RE+EC Sbjct: 146 DRGQCGLVVFLGSKMALPQDALYEIHARCFSLFAAVARIRPSD---AGRMRAISKRELEC 202 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G TS+EIA +L +S +T N Y+ +K R+ A+A A+R ++ Sbjct: 203 LKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 243 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 25 HLPTRSDLLARMIP------LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78 +R D+L ++P ++ +S + + L ++L++ + E Sbjct: 18 RAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQ-KNYLILE-NTSDEWNRLYFS 75 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 D V LS + P + P + D ++ Sbjct: 76 KGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATL 133 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197 G + I + + LLA+Y D + LT RE E L W+ Sbjct: 134 EEERGGLTFAGPRLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWV 193 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKT EI ++GISR+ V+ ++ S K +R+ A+A R ++ Sbjct: 194 AEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] Length = 218 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y D A +R + + + L + D+ GK +LT Sbjct: 104 DGYVLKDSDSATLRKAITAVHMGEGYVEPS-------LTPLLNSSLVERDIMTGKVNDLT 156 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE++ L I+ G + EIAV L IS TV N+I++I RK R+ A +A++N IV Sbjct: 157 KRELQVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQAAVFAIKNKIV 215 >gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL W SEGKTS EIA ILGI+ TVN ++ + RKT + R AIA V + ++ Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGML 243 >gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 228 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 17/230 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDLVRC 89 +L + + + TE + ++ L R + F ++ S +P + Sbjct: 1 MLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAWMSH 58 Query: 90 MALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAG----MDNRYCSLTFDVAR 139 VL+ + +F P C + A+ Sbjct: 59 YQAENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHAQ 118 Query: 140 IRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + D L + + ++ + + + RE+E L W Sbjct: 119 GFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILKW 178 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKTS E+A+IL IS NTVN + ++ RK ++ YAV ++ Sbjct: 179 TAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 228 >gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 229 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + + + + ++ D E IV P ++ + + + ++ Sbjct: 15 FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70 Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 EL+ V H L + +L V + G L PK Sbjct: 71 LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207 + + + E LA + ++V+ L T RE E L +++GK++ I Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N++++I++K R+ A+ A++N Sbjct: 188 ESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNG 224 >gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 239 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 1/155 (0%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + R + V + Y + + + + Sbjct: 82 GIAAAGAIKRSVPRVRVVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHSG 141 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I ++ + A A D LT RE+E L ++EG+ + EIA L Sbjct: 142 QSLISPSMASKLMVEFATMARGG-GEDRPRAHAPHLTARELEVLKLVAEGRANREIARKL 200 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 201 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235 >gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 223 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 14/208 (6%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL---QRPTE 107 A+ +Y+ S + ++ QE S++ + P LV + + +KD Y V Q P Sbjct: 17 AVKDYLELSGYSVITAQNGQEAL--SLLETYRPHLLVSDIKMPQKDGYTLVRHLRQLPEF 74 Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-- 160 PV T E I + Y F++ ++ + L K +II + + Sbjct: 75 RLLPVVFLTERGTKEERIQGYEVGCDVYLPKPFEMDELKAVIRNLVEKTQIIQSEWRFSQ 134 Query: 161 -EIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 E + + ++ V LT RE + L ++ G ++ EI L +S TV Sbjct: 135 GESQPKPTLEPSQKEAIAVPSLLNSLHLTSRESQVLNLLARGLSNGEIGQNLHLSSRTVE 194 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT T R+ + +A+ ++++ Sbjct: 195 KYVSSLLRKTETNNRAELVRFALDHHLI 222 >gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] Length = 326 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDF 184 ++ R +M DR LAA ++ + + K Sbjct: 203 RSGITVPLRGPRGSCAIMSFARHCEREFHDRTIAYLQLAATHFHLRVAKIANLNAVQKIP 262 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE EC+ W++ GK+S +I VI+ IS NTVN +I ++MRK T +R+ A A+ Sbjct: 263 ALSLREKECVLWVARGKSSWDIGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIKAISLG 322 Query: 245 IV 246 I+ Sbjct: 323 II 324 >gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli] Length = 241 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR---IILRDRLW-EIGLLA--AYQANM 172 G+ S+ +G + R IL D L ++ LL + A M Sbjct: 108 EAARAHGLRRGVHSVFNAAQTGALGFLSFSRCSRREIPILSDELQLKMQLLVRESLMALM 167 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 168 RLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPN 227 Query: 233 RSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 228 KTQVACYAAATGLI 241 >gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens PA1] Length = 243 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 25 HLPTRSDLLARMIP------LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78 +R D+L ++P ++ +S + + L ++L++ + E Sbjct: 18 RAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQ-KNYLILE-NTSDEWNRLYFS 75 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 D V LS + P + P + D ++ Sbjct: 76 KGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATL 133 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197 G + I + + LLA+Y D + LT RE E L W+ Sbjct: 134 EEERGGLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWV 193 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGKT EI ++GISR+ V+ ++ S K +R+ A+A R ++ Sbjct: 194 AEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 227 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 86/212 (40%), Gaps = 18/212 (8%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 ++++Y+ S + ++ D QE ++V + P +V + + + Y V Q+ Sbjct: 17 SISDYLELSGYSVIMADDGQEAL--AMVEENNPDLIVTDIVMPRLNGYELVRRVRQKAEF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161 PV E I + Y F++ + + L + +II + R Sbjct: 75 RLLPVILLTERTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLERSQIIQSEYRFPH 134 Query: 162 IGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISR 214 L + + LT RE E L ++ G ++ +I L +S Sbjct: 135 QDNLETSITGKLRDSNHALSTQIHAPKLLSSLTTREQEVLELLTHGLSNADIGNQLHLSP 194 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV Y++S++RKT T R+ + +A+++ +V Sbjct: 195 RTVEKYVSSLLRKTLTSNRAELVRFAMKHGLV 226 >gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 208 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 43/77 (55%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 M S +LT RE+E L I++GKT+ EIA L IS TV ++++I+ K Sbjct: 131 GKMMNSMRKPSLPHEQLTSREMEVLLLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLD 190 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A+ YA ++ +V Sbjct: 191 VQDRTQAVIYAFKHGLV 207 >gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 23/236 (9%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 147 LFPKGRIIL---RDRLW-----------EIGLLAAYQANMFKS--YDVHWGKDFELTGRE 190 L + L R L + LLA + D+ + + RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKRE 184 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 74/234 (31%), Gaps = 25/234 (10%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ C S + +G +F R + +P + Sbjct: 10 FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQIAGMSS-SRCTLDGFPAEWRLRYDS 67 Query: 93 SEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIR 141 ++ V+Q P+ + + + C + R Sbjct: 68 ADYLSIDPVVQHCRCRTVPLIWSDDLYTTGRAKIMRDEAKSYGLVYGLSCPVH---DRGG 124 Query: 142 IGLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWGKD--FELTGREVE 192 ML RD + L + A M + D + +LT RE E Sbjct: 125 TISMLSMATDAPFERDTIDVLRLLSLSQLLASFVHAAMQELLDCRLRRQGSCDLTARERE 184 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A ++ Sbjct: 185 SLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum ATCC 27405] gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 1313] Length = 216 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 42/77 (54%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + N + + +LT RE+E L I++G + EIA L IS TV N++++I +K Sbjct: 138 EFNRVTVNEKAKKTENDLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKL 197 Query: 229 ATKTRSGAIAYAVRNNI 245 R+ A YA ++NI Sbjct: 198 NVSDRTQAAIYAYKHNI 214 >gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter xylosoxidans A8] Length = 237 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 20/233 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 DLL + ++ A+ + +G S+ + L F + ++ SD+P Sbjct: 7 DLLLTTNSATSEQAVFTKVAAVAQELGFSYCAYGLRAALPFTNPQ--FVMISDYPIAWQE 64 Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPP--AGMDNRYCSLTFDVARI 140 A + + ++ + P VF PE G+ + D A Sbjct: 65 RYAQARYLEIDPTVKHCSRSSIPIVWSDRVFAETPELWDEAQAVGLCVGWSQSNLD-AYG 123 Query: 141 RIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVEC 193 G++ L + + L L A + + LT RE E Sbjct: 124 TGGMLTLARQKEQLSDAELLSKELRMRWLVTAAHLAFSKVLLPRFKLAPNVPLTRRETEI 183 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W ++GKTS +++ IL I+ +TV + + + K + R+ A+A A ++ Sbjct: 184 LKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAALLGLL 236 >gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis EO147] gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis C6786] Length = 230 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 20/207 (9%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-- 113 +G H +V ++VS +P + V ++ + + R + F Sbjct: 26 IGYQHHAIVELSGASHSASVNVVSLHYPSEWVEHYTRNDYFD-IDPIPRAAFRYSTPFSW 84 Query: 114 -----------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 H L E AG+DN S+ + L+ L + W Sbjct: 85 SDVATSNLRERHLLMEA--EDAGLDNG-ISIPLHQPLGHVLLINLSGTAPTHDAEAKWRN 141 Query: 163 GLLAAYQANMF---KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L Q ++ LT RE CLTW++ GK+S IA +L IS+ TV+ Sbjct: 142 AYLLGMQFHLQFQSMRTSRPIPPSVHLTDREQICLTWVARGKSSWVIANMLDISKYTVDF 201 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I + M K T++R+ A A R ++ Sbjct: 202 HIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum] Length = 236 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 A GL+ L + L ++ + + AN+ + + + LT RE Sbjct: 121 AHGAFGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTTRE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ ++ Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum PSI07] gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum PSI07] Length = 236 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 AR GL+ L + L + + AN+ + + + LT RE Sbjct: 121 ARGAFGLLTLARHADPLTAAELDRLSATTNWLANLAHTLMSPFLMPKLVPESNAVLTARE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ ++ Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIVIGLI 236 >gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 223 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F + T D+ + + I G L+ P + L E L+ + Sbjct: 92 IFDLVRAGATGYLLKDSESSQIVAAIRAIYRGESLIHPS---VASKILAEFSLM-----S 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K W + +LT RE+ L +++GKT+ EIA L +S TV N++ +I K Sbjct: 144 QKKGKKPAWVEH-DLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVY 202 Query: 232 TRSGAIAYAVRNNIV 246 R+ A A+R ++ Sbjct: 203 DRTQAAILAIRKGLI 217 >gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 272 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L W+ GK++ EIA IL IS TV N++ +I+RK + RS A A A R + Sbjct: 210 ITPREKEILQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGL 269 Query: 246 V 246 + Sbjct: 270 I 270 >gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 23/236 (9%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPQAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 147 LFPKGRIIL---RDRLW-----------EIGLLAAYQANMFKS--YDVHWGKDFELTGRE 190 L + L R L + LLA + D+ + + RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKRE 184 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 219 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 5/183 (2%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 DL + + D +V D ++ + + V L F+ Sbjct: 41 AAVDLAAKLRPDVVVM-DVRMPVLDGIEATRLLAGAGVPHPVKVLVVTTFNLDEYVYEAL 99 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + +++ G+ + ++ + + L+ Y A + + D +D Sbjct: 100 RAGAGGFLLKDAPPSQLLQGIRTVAAGAALLDPEVTRQ--LVGRYAARIRPTGDA--ARD 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L I++G +++EIA L ISR TV +++ I+ K + R A+ YA R Sbjct: 156 IPLTPRELEVLRLIADGLSNNEIAAALVISRETVKTFVSRILTKLGLRDRVQAVIYAYRQ 215 Query: 244 NIV 246 +V Sbjct: 216 GLV 218 >gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 234 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 23/234 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ ++ + V+W + L + G L+ + D+ + S + + Sbjct: 1 MSPLLEAENDVTWFRELARLADDWGFDRVLVGILPRPGMRLEDAFIRSTYSPTWRQFYNE 60 Query: 93 SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132 + P+ H L ++ P + Sbjct: 61 QGFAHIDPTVAHCMTKSSPLIWSPDLFDTYPAQTMYEEARAHGLRAGVSLPIHGPRQESG 120 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L V ++ L ++ Q ++ K LT RE E Sbjct: 121 LICFVNDHNPSDDFWRHLDVVLPNLVLLRDLVIDTSQPHLNTHTQALVPK---LTPREQE 177 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 178 CLKWTARGKSTWEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIATQLGLI 231 >gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 308 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 6/108 (5%) Query: 137 VARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + G L P R++ R L E LL + QA + +LT RE E Sbjct: 196 AQQAGEGATALEPGQRLLARPLGASGLGETMLLLSVQAAGAEP--AARLPRVDLTPRETE 253 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+WI++GKT+ +IA ILG+S TVN ++ I K +TR+ A A A Sbjct: 254 VLSWIAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALA 301 >gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein [Ralstonia solanacearum GMI1000] gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 A GL+ L + + L ++ + AN+ + + LT RE Sbjct: 121 AHGAFGLLTLARRADPLTAAELEQLSATTNWLANLAHALMSPFLMPKLVPESSAALTARE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ ++ Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236 >gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 303 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 VR + + + + + E + Y + + Sbjct: 140 VRMPKRTGIEACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAA 199 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I LL + + + + H +LT RE+E L +++G + Sbjct: 200 IRAVHGGQSLISPS--MASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNN 257 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L IS NTV N++ +I+ K +R A+ YAVR ++ Sbjct: 258 RDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAVREKLL 300 >gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)] Length = 241 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 17/213 (7%) Query: 49 MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 + AL E + + F + + + ++P D V+ + ++ Sbjct: 31 LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88 Query: 108 LFCPVF---HTLPENITPPAGMDNRYCSLTFDV----ARIRIGLMLLFPKGRII------ 154 P+ + + + A+ R+G++ L K I Sbjct: 89 SSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFE 148 Query: 155 -LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 L+ A + + +S + +GRE + L W ++GKTS+EI VI+G+ Sbjct: 149 ALKPVTRAFAAAAHEKISELESDVRVFNTGVAFSGRECDVLRWTADGKTSEEIGVIMGVC 208 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TVN + +I RK R A++YAV + Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 87/234 (37%), Gaps = 18/234 (7%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 +D + + L+ L GAS F ++ D D V ++W +L+ Sbjct: 7 TDYVDEISRLETAYDVFRYARRLGNDFGASRFSILTLDKQTSAISDLGVVNNWDPELIAV 66 Query: 90 MALSEKDKYYNVL--------------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 + K VL + P L + M C Sbjct: 67 YDENGLSKASPVLGHFETGNRVMTYDMDTMLQERAPESAALARELFNDFDMKYGACCPVN 126 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVE 192 D R GL+ ++ D + LL+ Y + + V + L+GRE++ Sbjct: 127 DGKGNRGGLVF-SGNELVLNPDDGAMLHLLSNYLYDHLVQISATSVTRSEMPSLSGREMD 185 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL+ + GKTS E A L +S +TV +Y+A +K R A+A A+R ++ Sbjct: 186 CLSHAALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALRLGLL 239 >gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + +L V + G L PK + + + E LA+ + Sbjct: 91 VTHALKTGASGYLLKEMDADALVEAVKVVADGGSYLHPK---VTHNLVKEYRRLASDENG 147 Query: 172 MFKSY-DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + Y V + L T RE E L +++GK++ I L IS TV N++++I++K Sbjct: 148 SSEGYTQVEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMN 207 Query: 230 TKTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 208 VNDRTQAVVVAIKNG 222 >gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 216 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 41/77 (53%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + N Y+ LT REVE L I+EG + EIA L IS TV N+I++I +K Sbjct: 138 EFNRVTLYEQDKSIANNLTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKL 197 Query: 229 ATKTRSGAIAYAVRNNI 245 R+ A YA ++NI Sbjct: 198 DVNDRTQAAIYAFKHNI 214 >gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 238 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ C S + +G +F R + + +P + Sbjct: 10 FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 67 Query: 93 SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143 ++ V+Q P ++H + M + S I Sbjct: 68 ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127 Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195 ++ + ILR L + A M + D + +LT RE E L Sbjct: 128 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 187 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A ++ Sbjct: 188 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein [Sinorhizobium meliloti 1021] gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family, regulator of sinI [Sinorhizobium meliloti 1021] gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 245 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 +R P+F E G+ S +A + IG + + R L + Sbjct: 95 RRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDF 154 Query: 163 GLLAA-YQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L A + A+M + + +D LTGRE E LTW + GK+ EIA ILGIS TV Sbjct: 155 QLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVR 214 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ + RK + + A+A+AVR+ ++ Sbjct: 215 FFMTNARRKLNVVSNTQAVAHAVRHALI 242 >gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + V L F+ + + Sbjct: 52 EVVVMDVRMPVLDGIEATRLLAGAGVPHPVKVLVVTTFNLDKYVYEALRAGASGFLLKEA 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 +++ G+ + ++ + L+ Y A + + D +D LT RE+E L Sbjct: 112 PPSQLLHGIRTVATGAALLDPEVTRR--LVGTYVARIRPAEDT--SRDIPLTPRELEVLR 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EIA L IS TV +++ I+ K + R A+ YA R +V Sbjct: 168 LIADGFSNSEIAAALQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218 >gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] Length = 294 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 14/248 (5%) Query: 13 NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72 + + + + + D L R+ P ++ T + + G SH ++ + Sbjct: 46 SGQADVGAAVPGAMSGALDRLNRLAPPWDEIALTQLLGDVATDFGFSHAAVLSVPSTDDG 105 Query: 73 KLD-SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---HTLPENITPP----- 123 ++ S+W + + V+ P TL P Sbjct: 106 GTATRLLLSNWSESFGQAYEQLGLHRSKLVVGALKTDPMPFVWDIDTLYGADEPDPSPAA 165 Query: 124 -AGMDNRYCSLTFDVARIRI---GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 M+ Y + F G + + + + + E+ L A M + Sbjct: 166 RMLMEAEYLAGAFFPVHGLTAFNGALSFAGRSCALPAEAIRELHLFAFALFGMLAAARFE 225 Query: 180 WGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + + L+ RE +CL GKTS EI +IL +S T++ Y+ + RK R+ A+A Sbjct: 226 ENRRNNPLSVRERDCLKLAMLGKTSSEIGIILSLSEYTISQYLTAAQRKLDASNRTHAVA 285 Query: 239 YAVRNNIV 246 A + + Sbjct: 286 LAAQLGYL 293 >gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 AR GL+ + + + + + L A + AN+ S + LT R Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA-IAYAVRNNIV 246 E E L+W SEG+T+ EI L IS TV +I +I+ K + A + A+ ++ Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVVKAIGMGLI 237 >gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 6/172 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134 +V D ++ + + + RP ++ L E + + + Sbjct: 52 DVVVMDVRMPVLDGIEATRLLA-GEGVARPVKVLVVTTFNLDEYVYEALRAGASGFLLKD 110 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 +++ G+ + ++ + + L+ Y A + + + + LT RE+E L Sbjct: 111 APASQLLQGIRTVAGGAALLAPEVTRQ--LVGRYAARVRPAENAPA--EVPLTPRELEVL 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G ++ EIA L IS TV Y++ I+ K + R A+ YA R +V Sbjct: 167 LLMADGLSNSEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218 >gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] Length = 242 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 14/230 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + + + G HF++ ++ ++ P Sbjct: 11 DFVEGLDDCHDHDQVAHSVERILAEFGFEHFVITGLPNPNDRLDQVLLIRRLPAGWFEHY 70 Query: 91 ALSEKDKYYNVLQRPTELFCPV--------FHTLPENITPPAGMDN----RYCSLTFDVA 138 A V + P T P I + R S+ Sbjct: 71 ARHNYMYLDPVFRNCRATTSPFDWGEAPYDPETEPGAIEVMQRATDFGMARGFSVPIHGP 130 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTW 196 + + + + ++A Y + K LT RE E LTW Sbjct: 131 EGCEACFSMSGRNPDLTGRTKPAVHMIAMYAFERARQVGRRPAKPPSNPLTQREQEVLTW 190 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GK+S + A I+ I+ T + + K R+ A+ A+++ + Sbjct: 191 AALGKSSRDTAEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKFI 240 >gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum] Length = 251 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 10/166 (6%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDNRYCSLTFDVARI 140 PF MA KD + +R ++ F H L + I P G + SL+ I Sbjct: 93 PFRWREAMAAFHKDAH---QRRMEQMMVDAFGHGLEDGYIFPIHGRNGTLASLSLAGKPI 149 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + + + R W + L + + D LT RE+E L +++EG Sbjct: 150 ELSPVEIALL-EAVARKAFWRLLDLKGEA----PALETVLPADTPLTRREMEILHYLAEG 204 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ ++ Sbjct: 205 MTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250 >gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans] gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 237 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 65/184 (35%), Gaps = 14/184 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY 130 ++ S++P E ++ PV F E R Sbjct: 53 VLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDDLFAPARELWEEARSFGLRA 112 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDF 184 +G ML + + W+ L+ A +M + + Sbjct: 113 GLAHTCRDAGGMGGMLTLARAGETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQPEI 172 Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ REVE L W EGKTS EIA IL I+ TVN +I+ M K ++ A+ A Sbjct: 173 AVQLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAM 232 Query: 243 NNIV 246 ++ Sbjct: 233 LGLL 236 >gi|67921004|ref|ZP_00514523.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67857121|gb|EAM52361.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 231 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 19/211 (9%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPT 106 A+ +Y+ + + ++ S+V + P L+ + + KD Y + Q P Sbjct: 16 VAVKDYLEMHGYGCITAQNGEDAF--SLVQTYRPHLLISDIKMPRKDGYTLVKELRQLPE 73 Query: 107 ELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 PV T I + Y F++ ++ + L + +II + W Sbjct: 74 FRLLPVVFLTECSTTESRIQGYQVGCDVYLPKPFEMDELKAVIRNLLERSQIIQSE--WR 131 Query: 162 IGLLAAYQAN-------MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 + N K + FELT RE E L ++ G ++ EI L +S Sbjct: 132 FSQNKSVNQNTPQQQQQAAKISIQAEIEFFELTRRESEVLDLLTMGLSNGEIGQRLHLSP 191 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T+ Y++S++RKT T R+ + +A +++ Sbjct: 192 RTIEKYVSSLLRKTDTSNRAELVRFAFDHHL 222 >gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall stress [Bacillus subtilis subsp. spizizenii str. W23] Length = 211 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCSLTFDVAR 139 P ++ + + D Q EL P V + ++ ++ S ++ Sbjct: 48 PDVILMDLVMEGMDGIEATKQICRELPDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSK 107 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + R + +A + + H LT RE+E L I+E Sbjct: 108 AA----EIADAIRAASKGEPKLESKVAGKVLSRLRHSGEHALPHESLTKRELEILCLIAE 163 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT+ EI L I+ TV +I +I+ K R+ A YA RN++V Sbjct: 164 GKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210 >gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli H489] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046] gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227] gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli E24377A] gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC 3083-94] gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019] gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei Ss046] gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii Sb227] gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A] gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94] gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019] gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407] gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae CDC 74-1112] gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G] gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68] gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli E1520] gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli TA007] gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC O1] gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli CFT073] gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89] gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11] gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88] gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39] gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972] gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605] gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1] gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11] gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88] gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39] gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82] gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972] gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE15] gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034] gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972] gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146] gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1 str. NRG 857C] gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3] gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1] gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3] gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli WV_060327] gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1] gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli H252] gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli H263] gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2] gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1] gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Escherichia coli AA86] gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1] gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC 9905] gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143] gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli TW10509] gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073] gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89] gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] Length = 244 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 168 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 229 PNKTQVACYAAATGLI 244 >gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14] gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14] Length = 207 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 72/179 (40%), Gaps = 17/179 (9%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127 L I P ++ + + E + + ++ ++ V + ++ + +D Sbjct: 40 LSYIEQHHLPDIVLLDLVMPEMNGIEITEVLKRQYPQVKVLVLTSYVDDEHVISAIDKGA 99 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y + ++ + + RII + ++ ++ +L+ Sbjct: 100 DGYEMKDVEPQKLIETIHKVLNGERIIHPEA-----------KSVIETVSKKPHFTNKLS 148 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N ++ Sbjct: 149 KREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207 >gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 221 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 90/204 (44%), Gaps = 15/204 (7%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 ++++Y+ S + +V ++ +++ P L+ + + E D Y V Q+P Sbjct: 17 SVSDYLQLSGYSVVTAANGKQAL--EMLNRYQPHLLITDIVMPEMDGYDLVRQVRQQPAF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV E I + Y S F++ + + L + ++I D Sbjct: 75 RLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLLDRMQMIQTDWHIRT 134 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + +Y + + LT RE E LT +++G ++ +I L +S T+ Y++ Sbjct: 135 KSQARGEMETLAAY-----QQWGLTQREQEVLTLLTKGLSNAQIGDRLHLSARTIEKYVS 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S+++KT R+ + +A+ ++++ Sbjct: 190 SLLQKTEVHNRAELVRFALEHHLL 213 >gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 24/235 (10%) Query: 33 LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87 R+ M LT+ +G + FL++ ++ + + ++WP ++V Sbjct: 7 FNRIEEAAAGFNTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKIITNWPAEMV 66 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD--------------NRYCSL 133 V++R P F+ E I G + Sbjct: 67 DYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYF 125 Query: 134 TFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A G M + ++ +L I L + + + H K T E+ Sbjct: 126 PVHDAAGGRGAMSISGSRNFSMVEMAKLLFIATLIYDRLSQLTLNEKH--KPVAFTQSEL 183 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +CL + G+ S EIA +L +S + VNN I S++RK TR+ A+ A+R NI+ Sbjct: 184 DCLRLTAGGRKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSALRLNII 238 >gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A] gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171] gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1] gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354] gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271] gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591] gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A] gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171] gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1] gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042] gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354] gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010] gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180] gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271] gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 256 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDV 178 P +L R + GL++ + +D L+EI L A A + S Sbjct: 131 PLAPGTSGIALPVHADRGQCGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPSD-- 188 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G+ ++ RE+ECL + G TS+EIA +L +S +T N Y+ +K R+ A+A Sbjct: 189 -AGRTRAISKRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVA 247 Query: 239 YAVRNNIV 246 A+R ++ Sbjct: 248 KALRLGLI 255 >gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans] Length = 214 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 65/184 (35%), Gaps = 14/184 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY 130 ++ S++P E ++ PV F E R Sbjct: 30 VLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDDLFAPARELWEEARSFGLRA 89 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDF 184 +G ML + + W+ L+ A +M + + Sbjct: 90 GLAHTCRDAGGMGGMLTLARAGETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQPEI 149 Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ REVE L W EGKTS EIA IL I+ TVN +I+ M K ++ A+ A Sbjct: 150 AVQLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAM 209 Query: 243 NNIV 246 ++ Sbjct: 210 LGLL 213 >gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 229 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + + + + ++ D E IV P ++ + + + ++ Sbjct: 15 FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70 Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 EL+ V H L + +L V + G L PK Sbjct: 71 LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207 + + + E LA + ++V+ L T RE E L +++GK++ I Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N++++I++K R+ A+ A++N Sbjct: 188 ESLFISEKTVENHVSNILQKMNVNDRTQAVVVAIKNG 224 >gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 19/234 (8%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDWPFDL 86 RS++ + L + + TE +G +F L+ F ++ + S +P Sbjct: 10 RSEVKEKFQALTASFELKTLLQQFTESLGFDYFAFLIQHPVPFTRPRIH--LHSTYPKLW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPA--GMDNRYCSLTFDVA 138 V+ VL + F G+ + + Sbjct: 68 VKRYEKQNYYAVDPVLTLCQRPGRGMAWSEEQFTDAGNLWHEAREYGLQSGFSCSAMAPN 127 Query: 139 RIRIGLMLLFPKGRIILRDRLWEI----GLLAAYQANMFK--SYDVHWGKDFELTGREVE 192 R+ IG++ + + I ++ R E+ LLA + + S D + RE+E Sbjct: 128 RV-IGILSISSQQPISVQLRHAELEVKLHLLAELSLDTLERFSDDAMMVLKKAFSQRELE 186 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKT+ EI++IL IS +TVN + ++ ++ ++ YA ++ Sbjct: 187 ILKWTAEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240 >gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response regulator) [Geobacillus kaustophilus HTA426] Length = 224 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L T + +L V + G L PK + + + E L + Sbjct: 91 VMRALQTGATGYLLKEMDADTLIEAVRIVAEGGSYLHPK---VTHNLIREYRRLTTEKGG 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +V LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 148 AVVKQEVRRPLHL-LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVN 206 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 207 DRTQAVVVAIKNG 219 >gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 603 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 5/183 (2%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 DL + D +V D ++ + + V L F+ Sbjct: 425 AAVDLAGRLRPDLVVM-DVRMPVLDGIEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEAL 483 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + A++ G+ + ++ + + L+ Y A + + D Sbjct: 484 RAGASGFLLKDAPPAQLLHGIRTVASGAALLAPEVTRQ--LVGRYAARIRPAEGTPA--D 539 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L I++G ++ EIA L IS+ TV Y++ I+ K + R A+ YA R Sbjct: 540 VGLTPRELEVLRLIADGLSNSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRT 599 Query: 244 NIV 246 +V Sbjct: 600 GLV 602 >gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] Length = 244 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 8/136 (5%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLAA-YQANM 172 G+ +L R+ L+ + P+ R L + L A + A+M Sbjct: 106 EAAEDIGLSTEGVALPLPSPAGRMALLAISANMSPPEWAEYRRCHLRDFQLAANLFHASM 165 Query: 173 FKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + D +D LT RE E LTW + GK+ EIA ILGIS TV ++++ RK Sbjct: 166 LEQAMADAIDDRDTRLTSRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNV 225 Query: 231 KTRSGAIAYAVRNNIV 246 + + A+A AVR+ ++ Sbjct: 226 VSNTQAVAQAVRHALI 241 >gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 225 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA- 170 V L T + +L V + G L PK + + + E LA+ + Sbjct: 91 VMRALQTGATGYLLKEMDADTLIEAVKIVAEGGSYLHPK---VTHNLIREYRRLASEKGE 147 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N + +V W LT RE E L +++GK++ I L IS TV N++++I++K Sbjct: 148 NKERKREVRWPLHL-LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNV 206 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 207 NDRTQAVVVAIKNG 220 >gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 15/187 (8%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDN 128 D++++ ++P + S+ +++ F P+ H I N Sbjct: 50 DTLIADNYPLAWRQQYDESQFMLIDPIVRYSMTNFLPIRWSEIRAHHQDSQIIFEEARLN 109 Query: 129 RY---CSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGLLAAYQA---NMFKSYDVH 179 S+ R G++ + + LL A + Sbjct: 110 GLKEGFSIPVHGLRGEFGMLSFATSDTRHYDLNLPAIQASQLLVPLLAQNIDNIVRCHRD 169 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ELT RE +CL+W +EGK++ EIA I+ S TV ++++ +K R AI Sbjct: 170 AKPRAELTCREGQCLSWAAEGKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITK 229 Query: 240 AVRNNIV 246 A+ + Sbjct: 230 AILGGYI 236 >gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ TL + + L V + G + PK + + E L+ + Sbjct: 96 VYRTLRAGASGYLLKEMGTSDLVDAVRVVASGGAYIHPK---VTGKLIEEFRRLSEQEGT 152 Query: 172 MFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 +S+ V + + LT RE E L ++EGK++ I L IS TV N+++SI+ Sbjct: 153 AERSFSVDESQAIDPKVIESLTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSIL 212 Query: 226 RKTATKTRSGAIAYAVRNN 244 +K + R+ A+ +++N Sbjct: 213 QKLNVQDRTQAVVISIKNG 231 >gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 83/242 (34%), Gaps = 33/242 (13%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVR 88 D+L + + + +G +F L +K ++ V S++P Sbjct: 4 DILDQTSSAKTERDIHDILSRIAARLGFDYFFYG--TLSDMRKPENPVKTVSNYPMAWQE 61 Query: 89 CMALSEKDKYYNVLQRPTELFCP--------------VFHTLPENITPPAGMDNRYCSLT 134 S + V++ P F AG S Sbjct: 62 KYKSSGYIRIDPVVRHCGHRLIPLQWNDGICHCREQRNFMEDARGHGLVAGA-----SFP 116 Query: 135 FDVARIRIGLMLLFPKG-------RIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDF 184 + ++ L + + G LAA + S Sbjct: 117 VHSRHGEVSILSLASRSAGGTTSLSAKHAPATFAQGALAAAFVREGMERISNRPDHEPSA 176 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+ECL WI+ GK+S EIA+ILGIS N V ++ +M K ++R A+ A+ + Sbjct: 177 PLTHRELECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMASG 236 Query: 245 IV 246 +V Sbjct: 237 VV 238 >gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] Length = 218 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 4/118 (3%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y ++ ++ + I +LA + + S D H K LT Sbjct: 103 GYVLKDVHPDQLIQTILGVARGESFIPPA--LTAKVLAEF--SRLTSVDHHDKKHSTLTE 158 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++G+++ +IA L IS TV N++ +I +K R+ A YA++ +V Sbjct: 159 RELEVLKQVAKGQSNKDIAKTLFISEKTVKNHLTNIFQKIGVADRTQAALYAIKEKLV 216 >gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75] gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75] Length = 228 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 101 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 152 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 153 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 212 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 213 PNKTQVACYAAATGLI 228 >gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa] Length = 239 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 25/237 (10%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 D + + W+ + + +G S F L+ D Q+ + IV ++P Sbjct: 5 DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLHKD-SQDYENAFIV-GNYPAAWHE 62 Query: 89 CMALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDV 137 + + + + T+ P+F H E + + ++ Sbjct: 63 HYDRTGYARVDPTVSQCTQNVLPIFWEASIYQTRKQHEFFEEASAAGLVYG--LTMPLHG 120 Query: 138 ARIRIGLMLLFPKGR------IILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGR 189 AR +G + L + + L + +L Y Q+ +++ K LT R Sbjct: 121 ARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSR 180 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W + GKTS EI+VI S VN ++ +I RK +R A AV ++ Sbjct: 181 EKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237 >gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 EDL933] gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. Sakai] gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC4024] gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. TW14359] gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK2000] gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK966] gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. EDL933] gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. Sakai] gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. TW14359] gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. 493-89] gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. USDA 5905] gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. LSU-61] gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1044] gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei] gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 238 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ C S + +G +F R + + +P + Sbjct: 10 FNEILNATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 67 Query: 93 SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143 ++ V+Q P ++H + M + S I Sbjct: 68 ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127 Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195 ++ + ILR L + A M + D + +LT RE E L Sbjct: 128 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 187 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A ++ Sbjct: 188 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator [Pseudomonas fluorescens] Length = 241 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 33/239 (13%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHF----------------LLVRWDL-----F 69 DL M+ L + + +Y+G + + + + Sbjct: 13 DLRMEMLKLQESAQVFALLEREVQYLGFDFYAYGIRHSIPFTRPKTEIYGSYPQPWMERY 72 Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--TLPENITPPAGMD 127 Q+Q +I S ++ + +E + +VL + L T P Sbjct: 73 QQQNYAAIDPS-----ILNGLRSTEMVVWNDVLFGKGSVLWGEAQDWGLRVGATVPIRTP 127 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + S+ R + R ++R RL I LAA + + + EL+ Sbjct: 128 DGALSVLSVARR----NTAISAVEREVIRLRLRCIIELAAGRLSELGHSNTQSDPQ-ELS 182 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W ++GK+S EIA+ILGIS NTVN ++ I +K ++ A AYA ++ Sbjct: 183 AREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241 >gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. W3110] gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12 substr. W3110] gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 11/214 (5%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R++ +D + AL E VG + V + ++ ++V S P +V + + Sbjct: 20 RVLLVDDHPLLRHGLRALLEQVGGAE---VVGEAGDGEEAIALVLSLNPDVVVMDLVMPG 76 Query: 95 K---DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 + ++ R +L V ++ + A + V + G + Sbjct: 77 VTGIEATRTLIDRRPDLGVLVLTMSEDDASVFAALRAGARGY---VLKGADGNDFIAAVR 133 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + + ++ + A + F + G ELT RE E L ++ GK++ EIA L Sbjct: 134 AVARGEAVYGPAV--ARRIRRFLTTGPESGPFPELTQREREILDLLASGKSNAEIARRLF 191 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S+ TV N++ SI K R+ A+ A R + Sbjct: 192 LSQKTVKNHLTSIFAKLQVADRTQAVVRARRAGL 225 >gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC1212] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70] gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70] Length = 221 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L +T + NR + +L + ++ ++ L L+A + N Sbjct: 94 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 150 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + Sbjct: 151 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 208 Query: 234 SGAIAYAVRNNIV 246 + YA ++ Sbjct: 209 TQVACYAAATGLI 221 >gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli O127:H6 str. E2348/69] gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6 str. E2348/69] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTSEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 248 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 43/64 (67%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +FEL+ RE+E L W+ +GK+S +I+VIL IS TV ++ +IM K +R+ A+A A+ Sbjct: 182 NFELSKREIEVLNWVKKGKSSWDISVILAISVRTVKFHVENIMVKLNAVSRTHAVAIALS 241 Query: 243 NNIV 246 ++ Sbjct: 242 AGVI 245 >gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 220 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 15/204 (7%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 A+T+Y+ A + ++ ++ +V P LV + + + D Y V Q+P Sbjct: 17 AVTDYLEAVGYTVISAATGKQAW--QLVQQYRPHLLVTDIRMPQMDGYELVKLVRQQPAF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV + E I + Y + F++ + + L + +I+ + Sbjct: 75 RLLPVIYLTECSQTQERIRGYKLGCDAYLAKPFNLEELAAVIRNLLDRVQIVQTE----- 129 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + + D +LT RE + L + EG ++ +I L +S TV Y++ Sbjct: 130 IQAVSQATPSREPVDTALINALDLTQREQQVLRLLMEGLSNAQIGEQLHLSSRTVEKYVS 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++KT T R+ + +A+ +N++ Sbjct: 190 KLLQKTETSNRAEIVRFAMEHNLL 213 >gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli EC4100B] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp. 4_1_40B] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 17/231 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + L +G FL + +++V+ ++P + Sbjct: 7 LIQENQQITSHDDLENVLNGLNNLIGHEFFLFGLSFQPTLKTSETLVTDNYPNSWRQQYD 66 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFDVARIR 141 S +++ F P+ + G+ + S+ R Sbjct: 67 ESGFMHIDPIVKYSITNFLPIRWDDAKRVNNDGRVIFEEARCNGLKAGF-SIPIHGLRGE 125 Query: 142 IGLMLLFPKGRI---ILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVECLT 195 G++ + + + L+ A+ Y LT REV+CL Sbjct: 126 FGMISFATSDTKSYDLNQQSIHTSQLIVPLLAHNIGNITRYHKDAKPRAVLTAREVQCLA 185 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGK++ EIA I+ S TV + ++ +K R AI A+ + Sbjct: 186 WAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAILGGYI 236 >gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 234 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ C S + +G +F R + + +P + Sbjct: 6 FNEILNATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 63 Query: 93 SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143 ++ V+Q P ++H + M + S I Sbjct: 64 ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 123 Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195 ++ + ILR L + A M + D + +LT RE E L Sbjct: 124 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 183 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A ++ Sbjct: 184 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 234 >gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638] gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718] gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638] gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431] gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14] gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. H 2687] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. G5101] Length = 240 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] Length = 459 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 A GL+ L + L + + + AN+ + + + LT RE Sbjct: 344 AHGAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAVLTARE 403 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W EGKT+ EI IL IS TVN ++ +++ K A + A+ A+ ++ Sbjct: 404 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 459 >gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 202 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 6/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 VR S + + ++ + + A + + Y +I Sbjct: 39 VRMPGNSGIEACTAIKEKAPRTKILILTASDDESDLFAAIKAGASGYLLKDLPTEQIAES 98 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I L+A + + + LT RE+E L ++ GK + Sbjct: 99 VRMAHTGQSMIPP--HMASQLIAEF-SRLSNEPPKEATAGPRLTERELEVLGLVARGKAN 155 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS NTV N++ +I+ K +R A YA+R N++ Sbjct: 156 KEIATQLFISENTVKNHVRNILEKLQLHSRVEAALYAMRRNLI 198 >gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli SMS-3-5] gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9] gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5] gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W] gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli M863] gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v] Length = 240 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis M50/1] Length = 213 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 7/119 (5%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N Y + A ++ ++ + I + L+ + M D K LT Sbjct: 100 NGYLLKDSESAELKKAILAVVNGEDYI------QPSLIPVLNSKMLDR-DSDSSKIESLT 152 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +S G + EIA L IS TV N++++I +K R+ A +A+RNN++ Sbjct: 153 RRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQAAVFAIRNNLI 211 >gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 234 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 2/161 (1%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + R + + + + + Y + + + Sbjct: 73 MPRRGGIDATSAIKQAVPSAKIVMLTISDEEGDLYDAIKAGAMGYLLKEISIDEVATAIR 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + +I LL+ + + K+ LT RE+E L +++G + + Sbjct: 133 AVHGGQSLISPS--MASKLLSEFALMIKKADSRPQLPTPRLTDREMEVLRLVAKGLNNRD 190 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS NTV N+I +I+ K +R A+ YAVR ++ Sbjct: 191 IAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 231 >gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 207 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 73/179 (40%), Gaps = 17/179 (9%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127 L + P ++ + + E + + ++ ++ V + ++ + +D Sbjct: 40 LSYLEQHHLPDIVLLDLVMPEMNGIEITEVLKRQYPQVKVLVLTSYVDDEHVISAIDKGA 99 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y + ++ + + RII + I + S H+ +L+ Sbjct: 100 DGYEMKDVEPQKLIETIHKVLNGERIIHPEAKSVIEAV---------SKKPHFTN--KLS 148 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N ++ Sbjct: 149 KREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207 >gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989] gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989] gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1] Length = 240 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L +T + NR + +L + ++ ++ L L+A + N Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227 Query: 234 SGAIAYAVRNNIV 246 + YA ++ Sbjct: 228 TQVACYAAATGLI 240 >gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-------- 154 +R P+F E G+ +L R+ L+ + + Sbjct: 95 RRRFPECEPLFVAAEE-----IGLSTEGVALPLPSPAGRMALLAISANMSPVEWSAYRRC 149 Query: 155 -LRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 LRD +L A+ + + + +D LTGRE E LTW + GK+ EIA ILGI Sbjct: 150 HLRDFQLAANLFHASMLEHSAMAGAMEDERDLRLTGRETEVLTWSAAGKSYWEIATILGI 209 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ + RK + + A+A+AVR+ ++ Sbjct: 210 SERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 243 >gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9] gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9] Length = 244 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 168 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 229 PNKTQVACYAAATGLI 244 >gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736] gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736] gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357] gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli H120] gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3] gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli E1167] gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736] Length = 240 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 225 PNKTQVACYAAATGLI 240 >gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli E482] gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82] Length = 240 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L +T + NR + +L + ++ ++ L L+A + N Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227 Query: 234 SGAIAYAVRNNIV 246 + YA ++ Sbjct: 228 TQVACYAAATGLI 240 >gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 208 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A N F+ +LT RE+E L I+ GK++ E+A L I TV ++ Sbjct: 124 SQVATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVT 183 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++++K + R+ A YA ++ IV Sbjct: 184 NVLQKLGVEDRTQAAIYAFKHGIV 207 >gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185] gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185] Length = 244 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 168 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 229 PNKTQVACYAAATGLI 244 >gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11] gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088] gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE11] gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088] Length = 244 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 168 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 229 PNKTQVACYAAATGLI 244 >gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 227 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-- 169 V H L T + +L V + G L PK I + + E L+ Sbjct: 91 VTHALKSGATGYLLKEMDSDALIEAVKVVAEGGSYLHPK---ITHNLVEEFRKLSNRYTP 147 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ LT RE E L +++GK++ I L IS TV N++++I++K Sbjct: 148 GGTYQQPPAVVPPLHLLTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLK 207 Query: 230 TKTRSGAIAYAVRNN 244 K R+ A+ A++N Sbjct: 208 VKDRTQAVVTAIKNG 222 >gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580] gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580] gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis] gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis] gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis] gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] Length = 229 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + +L V + G L PK + + + E LA + Sbjct: 92 VTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK---VTHNLVNEFRRLATSGVS 148 Query: 172 MFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 ++V+ L T RE E L +++GK++ I L IS TV N++++I++K Sbjct: 149 SHAQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKM 208 Query: 229 ATKTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 209 NVNDRTQAVVVAIKNG 224 >gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 214 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A N F+ +LT RE+E L I+ GK++ E+A L I TV ++ Sbjct: 130 SQVATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVT 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++++K + R+ A YA ++ IV Sbjct: 190 NVLQKLGVEDRTQAAIYAFKHGIV 213 >gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 1/156 (0%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 M+ E + T++ H E + L R + + L Sbjct: 60 DMSGIEATRQIRAASASTQVLVLTIHDQEEYLLEAIAAGASGFVLKDVEPRTLVEAVRLC 119 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G + L +L + + G LT RE E L ++EG ++ EI Sbjct: 120 CRGEGYVHPTL-SARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQ 178 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N+I SI RK R+ A+ +A+R Sbjct: 179 RLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214 >gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 11/225 (4%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSS 80 P R++ D M + + + VG DL ++ D +V Sbjct: 5 PPSGSAPTRVLVCDDQALIRMGLVTIIDAQPDMEVVGECGDGRTGVDLARKLDPDVVVM- 63 Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 D ++ + + V L F+ + + R+ Sbjct: 64 DIRMPVLDGLEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDRL 123 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 G+ + ++ D + L+ Y + + +D LT RE+E L I++G Sbjct: 124 LHGIRTVAMGAALLDPDVTRQ--LVGRYATRIRPTDGAP--EDIPLTPRELEVLRLIADG 179 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ EIA L IS+ TV +++ I+ K + R A+ YA R+ + Sbjct: 180 LSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVYAFRHGL 224 >gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y T V+R+ L L F + R+ L + + ++ D LT Sbjct: 100 GYILKTAPVSRLIEALNLAFDGQQSWTREELRRV-------TGALATPRMNQDIDVPLTQ 152 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L ++ G T+ EIA +LGIS TV ++ I+RK R+ A +AVR N+V Sbjct: 153 RESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVRKNLV 210 >gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 218 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 1/156 (0%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 M+ E + T++ H E + L R + + L Sbjct: 60 DMSGIEATREIRSASASTQVLVLTIHDQEEYLLEAIAAGASGFVLKDVEPRTLVEAVRLC 119 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G + L +L + + G LT RE E L ++EG ++ EI Sbjct: 120 CRGEGYVHPTL-SARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQ 178 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV N+I SI RK R+ A+ +A+R Sbjct: 179 RLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214 >gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 6/172 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134 +V D ++ + + + P ++ L E + + + Sbjct: 52 EVVVMDVRMPVLDGIEATRLLA-GAGVPHPVKVLVVTTFNLDEYVYEALRAGASGFLLKD 110 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 +++ G+ + ++ + + L+ Y A + + +D LT RE+E L Sbjct: 111 APPSQLLHGIRTVATGAALLDPEVTRQ--LVGTYAARIRPAEGPP--RDIPLTPRELEVL 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L IS+ TV +++ I+ K + R A+ YA R +V Sbjct: 167 RLIANGLSNSEIAATLVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGLV 218 >gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 225 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 21/227 (9%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R+ +D + + + E+ G F +V + L IV P ++ + Sbjct: 1 MTTRIAIIDDHQLFREGIKRILEFDG--DFEVVAEGSDGREALS-IVEEHRPDLVLMDIN 57 Query: 92 LSEKDKYYNVLQRPTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDV 137 + + + ++ E + V L T + +L V Sbjct: 58 MPDTNG-VEATKQLIETYPDTKVVVLSIHDDENYVMRALQTGATGYLLKEMDADTLIEAV 116 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 + G L PK + + + E L + LT RE E L + Sbjct: 117 RIVAEGGSYLHPK---VTHNLIREYRRLTTETNSNVMVQQEVRRPLHLLTRRECEVLQLL 173 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++GK++ I L IS TV N+++SI++K R+ A+ A++N Sbjct: 174 ADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNG 220 >gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 5/182 (2%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 DL + D +V D ++ + + V Q+ L F+ Sbjct: 41 AAVDLAGRLRPDVVVM-DVRMPVLDGIEATRLLAGAGVPQQVKVLVVTTFNLDEYVYEAL 99 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + +++ G+ + ++ + + L+ Y A + + D Sbjct: 100 RAGASGFLLKDAPPSQLLHGIRTVATGAALLDPEVTRK--LVGTYAARIRPAAGTPH--D 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L I++G+++ EIA L IS+ TV +++ I+ K + R A+ YA R Sbjct: 156 NPLTPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYRQ 215 Query: 244 NI 245 + Sbjct: 216 GL 217 >gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 211 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE E L +++G ++ +IA L IS TV N++++I+RK + R+ A+ A++ Sbjct: 147 ELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRG 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 261 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 19/249 (7%) Query: 15 EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQ 70 S + +++ R+ + + +T +G + L + Sbjct: 14 AKPIANWLASRVDATLEIIRRLDSVATADELGDSLLEITSPLGVEAIVAGVLPSSANHHM 73 Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---- 126 + + WP L R AL++ +L + +F Sbjct: 74 DHGDEKT-PGHWPALLTRE-ALAQNKLQSELLIDLEKQTTHIFTRDAATGEASHLRFVYA 131 Query: 127 -DNRYCS------LTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYD 177 DN + + F + + G + RD + + +A Y D Sbjct: 132 RDNDAEAWPDGERIVFPIVTVADMQCGFAFLGENLSRDETAMEILSFIANYAFARMVKVD 191 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +LT R+ E L W + GKT EIA IL +S++TV+ Y+ R+ AI Sbjct: 192 RMCKSKPKLTDRQSEVLKWAALGKTDWEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAI 251 Query: 238 AYAVRNNIV 246 A+R ++ Sbjct: 252 VLAMRYGLI 260 >gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS] gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC 8739] gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a] gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli UMN026] gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280] gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299] gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS] gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a] gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026] gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280] gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299] Length = 240 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L +T + NR + +L + ++ ++ L L+A + N Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227 Query: 234 SGAIAYAVRNNIV 246 + YA ++ Sbjct: 228 TQVACYAAATGLI 240 >gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 251 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 27/238 (11%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 21 RRAMLLRFQEMATAEGVYTELQYQTQRLEFDYYSLCVRHPVPFTRPKIS--LRTTYPQAW 78 Query: 87 V------RCMALSEKDKYYNVLQRPTELFCPVFH------------TLPENITPPAGMDN 128 V +A+ K N + +FH L +T + N Sbjct: 79 VTHYQAENYIAIDPVLKPENFREGHLHWDNVLFHEAQAMWDAAQRFGLRRGVTQSVMLPN 138 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 R V+R +G F + LR +L L+A D+ + + Sbjct: 139 RAVGF-LSVSRGSLGCSS-FTYDEVELRLQLLARESLSAL---TRLEDDIVMVPEMRFSK 193 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 194 REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 251 >gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis] gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 9/222 (4%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWPFD--L 86 +D L R+ + +S + M A GA L+ R+ F +Q D I+ D P + Sbjct: 23 TDFLNRL-QISYNLSGCLYMDASITSAGA---LVYRYGHTFDKQAKDPILMLDAPVLRNV 78 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 + ++ + + + L + +E + L + P + S+ A + I Sbjct: 79 LSQLSRAMEPVDMHDLAQLSEEGLLLRSKLRDLPLPRQAVSYPLLSVDGRGAILAIASNA 138 Query: 147 LFPKGRIILRDRLWEIGLLAA-YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSD 204 + R R +I LLA + A + K D G LT RE E L W + GK+ Sbjct: 139 CEEEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGTRLGGVPTLTRREQETLRWTAAGKSYW 198 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E AVILGIS TV ++A+ K + + A+A A++ ++ Sbjct: 199 ETAVILGISERTVRYFMANARTKLDAVSNTQAVAKALQRGLI 240 >gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1] gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1] Length = 240 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L +T + NR + +L + ++ ++ L L+A + N Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSVREIPILSDELQLKMQL-LVRESLMALMRLN-- 169 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227 Query: 234 SGAIAYAVRNNIV 246 + YA ++ Sbjct: 228 TQVACYAAATGLI 240 >gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 234 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 21/233 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ W + L E G L+ + D+ + S + + Sbjct: 1 MAPLLNAADEAEWFGVITGLAETWGFDRILVAMLPRPTMRLEDAYLRSTYAPAWRQTYDE 60 Query: 93 SEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIR 141 + P+ +L E +L Sbjct: 61 QGMVHIDPTVAHCLSRSAPLIWTPEIFATPAQQSLYEEARSYGLGAG--VTLPIHGPNQE 118 Query: 142 IGLMLLFPKGRIIL------RDRLWEIGLLAAYQANMFKSY-DVHWGKDF-ELTGREVEC 193 G+M + L + LL + K + D H +LT RE EC Sbjct: 119 AGMMCFVNDDKPADGFRRHVNAALPNLVLLRDLVIDTSKQHLDSHAQSLMPKLTPREREC 178 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 179 LKWTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRRAAAVIAAQLGLI 231 >gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806] gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 218 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 17/207 (8%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 A+ +Y+ + + +V E +++ + P LV + + D Y V Q+P Sbjct: 17 AVKDYLELAGYSVVAASNGLEAL--NLLDTYHPHLLVSDIKMPRLDGYSLVTKVRQQPEF 74 Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV + E I + Y F++ ++ + L + +++ +R ++ Sbjct: 75 RLLPVIFLTERGSTEERIRGYQVGCDIYLPKPFEMEELKAVIRNLLERSQMVQSERQYQK 134 Query: 163 GLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 K+ DV DF+LT RE E L ++ G ++ EI L +S T+ Sbjct: 135 ----LKPEESPKTRDVLTSSLQDDFKLTNREREVLEHLARGLSNSEIGQKLHLSSRTIEK 190 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT T R+ + +++ + ++ Sbjct: 191 YVSSLLRKTTTNNRAELVRFSLEHRLI 217 >gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302] gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302] Length = 244 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L +T + NR + +L + ++ ++ L L+A + N Sbjct: 117 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 173 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + Sbjct: 174 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 231 Query: 234 SGAIAYAVRNNIV 246 + YA ++ Sbjct: 232 TQVACYAAATGLI 244 >gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 339 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 L E +L +++A + + LT RE E L+W+S+GKT+ +IA ILG+S Sbjct: 248 ASGLGESMVLLSHEAPQTPA--ARRLQQVALTPRETEVLSWLSKGKTNRDIADILGMSPR 305 Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240 TVN ++ I K +TR+ A A A Sbjct: 306 TVNKHLEHIFEKLGVETRTAAAAVA 330 >gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] Length = 225 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + D L + + G ++P L RL + + + Sbjct: 91 VVEVIKAGAAGYLLKDVEPSMLVAAIRAVYEGESFIYPT----LAKRLLDETIRRGEKKK 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE+E L +++G ++ EIA L +S TV N++ +I RK Sbjct: 147 QESAVQPARRGEERLTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVT 206 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ YA+R+ IV Sbjct: 207 DRTQALIYAIRHKIV 221 >gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 234 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 71/234 (30%), Gaps = 23/234 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ W + L E G L+ + D+ V S + R Sbjct: 1 MAPLLDAADEAEWFGAIAGLAETWGFDKLLIAMLPRPTIRLEDAYVRSTYSPIWRRTYDE 60 Query: 93 SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132 + P+ H L +T P N+ Sbjct: 61 QGLVHIDPTVSHCATRATPLIWSPDIFTTASQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + V + L ++ Q ++ K LT RE E Sbjct: 121 MMCFVNDSNPSDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPK---LTPRERE 177 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 178 CLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231 >gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 234 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 71/234 (30%), Gaps = 23/234 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ W + L E G L+ + D+ V S + R Sbjct: 1 MAPLLNAADEAEWFGTIAGLVETWGFEKLLIAMLPRPTIRLEDAYVRSTYSPIWRRTYDE 60 Query: 93 SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132 + P+ H L +T P N+ Sbjct: 61 QGLVHIDPTVSHCATRATPLIWSPDIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + V + L ++ Q ++ K LT RE E Sbjct: 121 MMCFVNDSNPNDEFWQHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPK---LTPRERE 177 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 178 CLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231 >gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 269 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ W + L+E G L+ + D+ + S + + Sbjct: 36 MAPLLDAANEAEWFGVITGLSETWGFDRILVAMLPRPTMRLEDAYLRSTYAPAWRQAYDE 95 Query: 93 SEKDKYYNVLQRPTEL-----------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141 + + P +L E + Sbjct: 96 QGMVHFDPTVAHCLSRSGPLIWTPEIFATPAQQSLYEEARSYGLGAGVTLPIHGPNQEAG 155 Query: 142 IGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195 + + K R + L + LL + + + + +LT RE ECL Sbjct: 156 MMCFVNDDKPSDGFRRHVNAALPNLVLLRDLVIDTSRQHLNSHAQTLLPKLTPRERECLK 215 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 216 WTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 266 >gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 210 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y T + I + F + + +A ++ + + +LT R Sbjct: 101 YLLKTSKASEIADAIRATFHGQSVFEPE-------VAGKVMRNYRKQEERLPHE-QLTSR 152 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L +++GKT+ E+A L IS TV ++++I+ K + R+ A+ YA R+ +V Sbjct: 153 EMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 172 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 58/121 (47%) Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 + + + R ++L + + + + ++ L A + + Sbjct: 51 LSGVFLFIPLFTPEGRRYCLVLSGERQEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGR 110 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W SEGKTS EIA+ILG+S +TVN++I + RK R +A A+RN + Sbjct: 111 LTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 170 Query: 246 V 246 V Sbjct: 171 V 171 >gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 186 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 8/144 (5%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 L ++ + + Y ++ + ++ +I R+ + Sbjct: 48 PSCRVLVLTMYEHDEYLMAALRAGADGYLLKDSSSDQVVAAIRMVLQGDSVI-HPRMTK- 105 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ +Q +S + ELT RE E L +++G ++ EIA L IS TV +I Sbjct: 106 KLITYHQQTKSESN------ENELTEREKEILFELAKGLSNKEIAEALYISDKTVKIHIN 159 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I RK K+RS A+ YAVRN +V Sbjct: 160 KIFRKLNVKSRSQAVIYAVRNQLV 183 >gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium cellulolyticum H10] Length = 216 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 41/77 (53%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + N Y+ LT REVE L I+EG + EIA L IS TV N+I++I +K Sbjct: 138 EFNRVTLYEQDKSIINNLTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKL 197 Query: 229 ATKTRSGAIAYAVRNNI 245 R+ A YA ++NI Sbjct: 198 DVNDRTQAAIYAFKHNI 214 >gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 186 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ ++ + Y ++ + ++ +I R+ + L Sbjct: 50 CRVLVLTMYEHDEYLMSALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVI-HPRMTK-KL 107 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q +S + ELT RE E L + +G ++ EIA L IS TV +I I Sbjct: 108 ITYHQQTKLESN------ENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 161 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 RK K+RS A+ YAVRN +V Sbjct: 162 FRKLNVKSRSQAVIYAVRNQLV 183 >gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens] Length = 244 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 24/196 (12%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR--PTELFC 110 + A+++ L+ + + S P + + D + L Sbjct: 71 LQRYQAANYALI------DPTVKHSKVSSAPILWSNELFRNCPDLWSEANDSSLCHGLAQ 124 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 P F+T + SL L P + L +I L Sbjct: 125 PSFNTQGRVGVLSLARKDNAISLQ--------EFEALKPVTKAFAAAALEKISALETDV- 175 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + D E + RE + L W ++GKTS+EI VI+G+ +TVN + +I RK Sbjct: 176 -------RAFNTDVEFSERECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGA 228 Query: 231 KTRSGAIAYAVRNNIV 246 R A++YAV + Sbjct: 229 SNRVQAVSYAVALGYI 244 >gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D ++ + + + V L F+ + + Sbjct: 52 DIVVMDVRMPVLDGIEATRRLAGAGVADPVKVLVVTTFNLDEYVYEALRAGASGFLLKDA 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A++ G+ + ++ + + L+ Y A + + + LT RE+E L Sbjct: 112 PPAQLLHGIRTVATGAALLAPEVTRQ--LVGRYAARIRPA--QATPAETALTPRELEVLR 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EIA L IS+ TV Y++ I+ K + R A+ YA R +V Sbjct: 168 LIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218 >gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 224 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L T + +L V + G L PK + + + E L + Sbjct: 91 VMRALQTGATGYLLKEMDADTLIEAVRIVAEGGSYLHPK---VTHNLIREYRRLTTEKGG 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +V LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 148 AVVKQEVRRPLHL-LTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVN 206 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 207 DRTQAVVVAIKNG 219 >gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241] gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293] gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241] gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 213 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 7/156 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + + L ++ + + Y ++ + +L+ Sbjct: 62 GIEATELVKKIYPSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I R+ + L+ +Q M + ELT RE E L + +G ++ EIA +L Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVL 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +I I +K K+RS A+ YAVRN +V Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pyogenes M49 591] gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 213 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + VL++ E V + +N +D + Sbjct: 55 MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D H ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 213 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 7/161 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L + + L ++ + + Y ++ + Sbjct: 57 LPEKNGIEATELVKKKYPSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSDQVVAAIR 116 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L+ +I R+ + L+ +Q M + ELT RE E L + +G ++ E Sbjct: 117 MLYRGDSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKE 169 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA +L IS TV +I I +K K+RS A+ YAVRN +V Sbjct: 170 IAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] Length = 215 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + VL++ E V + +N +D + Sbjct: 57 MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGA----------KGY 105 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D H ELT RE + L +++G Sbjct: 106 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 165 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 166 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 210 >gi|21224466|ref|NP_630245.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256784341|ref|ZP_05522772.1| two-component system response regulator [Streptomyces lividans TK24] gi|289768220|ref|ZP_06527598.1| two-component system response regulator [Streptomyces lividans TK24] gi|4007689|emb|CAA22374.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289698419|gb|EFD65848.1| two-component system response regulator [Streptomyces lividans TK24] Length = 219 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 5/180 (2%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 DL +E + D +V D ++ + + V L F+ Sbjct: 44 DLARELRPDVVVM-DIRMPVLDGLEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEALRAG 102 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + + R+ G+ + ++ D L+ Y A + + +D L Sbjct: 103 ASGFLLKDAPPDRLLHGIRTVAMGAALLDPDVTRR--LVGRYAARIRPAEGT--ARDIPL 158 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L I++G ++ EIA L IS TV +++ I+ K + R A+ +A R+ +V Sbjct: 159 TPRETEVLRLIADGLSNSEIAAALVISPETVKTFVSRILTKLDLRDRVQAVVFAYRHGLV 218 >gi|126658803|ref|ZP_01729947.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126619901|gb|EAZ90626.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 224 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPT 106 A+ +Y+ + + ++ S+V + P LV + + KD Y + Q P Sbjct: 16 VAVKDYLEMHGYAAITAQNGEDAF--SLVQTYRPHLLVSDIKMPYKDGYTLVKELRQLPE 73 Query: 107 ELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 PV T E I + Y F++ ++ + L + +II + + Sbjct: 74 FRLLPVVFLTECDTTEERIQGYQVGCDVYLPKPFEMEELKAVIRNLLERSQIIQSEWRFS 133 Query: 162 -----IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 Q K + +LT RE E L ++ G ++ EI L +S T Sbjct: 134 QEQSQTQKNLQQQQEAAKISIQAEMEFLDLTRRESEVLDLLTTGLSNGEIGQRLHLSPRT 193 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + Y++S++RKT T R+ + +A+ +++V Sbjct: 194 IEKYVSSLLRKTDTSNRAELVRFALDHHLV 223 >gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 210 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170 VF L T ++ + + G +L P+ ++++R + L Sbjct: 90 VFAALEAGATSYLLKTSKASEIADAIRATFHGQSVLEPEVAGKVMQNRRRQRARL----- 144 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +LT RE+E L +++GKT+ E+A L IS TV ++++I+ K Sbjct: 145 -----------PHEQLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGV 193 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ A+ YA R+ +V Sbjct: 194 QDRTQAVIYAFRHGLV 209 >gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 255 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 23/234 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 +A ++ +W + L E G L+ + D+ V S + R Sbjct: 22 MAPLLDAADEAAWFGAVADLAETWGFDRLLIAMLPRPTIRLEDAYVRSTYAPAWRRTYDE 81 Query: 93 SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132 + P+ H L +T P N+ Sbjct: 82 QGLVHIDPTVAHCATRSTPLVWSPEIFITAPQRSMYEEARAHGLRAGVTLPIHGPNQEAG 141 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + V ++ L ++ Q ++ K LT RE E Sbjct: 142 MMCFVNDANPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHTQTLLPK---LTPRERE 198 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK++ EI+ IL S VN ++ +I K +R A A + ++ Sbjct: 199 CLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 252 >gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 234 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D + VA +R G L P+ ++ L +RL Sbjct: 95 FSALQAGARGFLTKDAGAEEIARAVADVRSGAAGLSPQVQLRLLERLAGPAAAPEPAPVA 154 Query: 173 FKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ + LT RE E L I+ G ++ EIA L +S TV +I ++ KTA Sbjct: 155 TEAAPEAVRRPSLPDGLTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTA 214 Query: 230 TKTRSGAIAYAVRNNI 245 + R+ A+AYA R+ I Sbjct: 215 VRDRAQAVAYAFRHGI 230 >gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens TA208] gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 214 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 48/94 (51%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R + R + + N D + K ++LT RE + L I++GK++ EIA L Sbjct: 115 REVYSGRYRLSADIVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLF 174 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS TV ++++++ K R+ A YAV+ NI Sbjct: 175 ISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNI 208 >gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] Length = 213 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 7/156 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + + L ++ + + Y ++ + +L+ Sbjct: 62 GIEATELVKKIYPSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I R+ + L+ +Q M + ELT RE E L + +G ++ EIA +L Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAKVL 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +I I +K K+RS A+ YAVRN +V Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] Length = 214 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 9/147 (6%) Query: 102 LQRPTELFCPVFHTLPEN--ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 ++P + E+ I + Y + ++ + G ++ + Sbjct: 73 REQPQTAILVLTAHEEEDQIIRLIEAGVDGYLLKDVSPETLYGAIVTVARGGSVLNPAIV 132 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 ++ + + S D ELT RE E L I++G T+ +IA L IS TV N Sbjct: 133 QKVLAKRRFNRTVAHSGD-------ELTEREKEVLGLIAQGSTNADIASALFISEKTVKN 185 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I +I RK K R+ A YA++N +V Sbjct: 186 HITNIFRKLQVKDRTQAALYAIKNRLV 212 >gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYN-----VLQRPTELFCPVFHTLPENITPPAG 125 +Q +V D V + ++ K + VL P + V + + Sbjct: 46 DQVDPDLVLMDTDLPGVNGLEVARVIKRSHPHIAIVLFGPVQSGAFVVKAIRAGVAACVP 105 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 + + L + ++R G +P ++L E+ D Sbjct: 106 PNIEFADLLGTLRQVRRGE---YPINDLVLAS--PEVAATVLEAFRQMVGDDDIQTIFSP 160 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G T+ EIA L IS TV N+I+SI+RK A R+ A+ YA+R Sbjct: 161 LSARELEVLELVAAGHTNREIAARLDISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGW 220 Query: 246 V 246 + Sbjct: 221 I 221 >gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 210 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y T + I + F + + +A ++ + + +LT R Sbjct: 101 YLLKTSKASEIADAIRATFHGQSVFEPE-------VAGKVMRNYRKQEERLPHE-QLTSR 152 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L +++GKT+ E+A L IS TV ++++I+ K + R+ A+ YA R+ +V Sbjct: 153 EMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 240 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ + + +P Sbjct: 10 RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPQAW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V VL +P H +++ + F + R ++ Sbjct: 68 VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 L F + LR +L L+A D+ + + Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQIACYAAATGLI 240 >gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo] Length = 213 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 15/166 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARI 140 DLV L + VL++ E V + +N +D Y T A I Sbjct: 55 MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEI 113 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + I + K++D H ELT RE + L +++G Sbjct: 114 LNAIRKVLKGELAIETE-----------VDKKIKAHDQHPDLHEELTAREYDILHLLAKG 162 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 163 YDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 253 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 3/102 (2%) Query: 148 FPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSD 204 P+ D + + +L A + D LT RE ECL W + GKTS Sbjct: 150 APERSQRHTDAISGLAVLTALHLHEAVRRLDASMSNAPIPSLTSREKECLQWAAAGKTSW 209 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA IL +S TV +I + +K R A+A A+ ++ Sbjct: 210 EIARILSVSERTVIFHIGNATKKLGATNRRQAVARAISLRLI 251 >gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 224 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 14/208 (6%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL---QRPTE 107 A+ +Y+ + ++ QE S++ + P L+ + + +KD Y V Q P Sbjct: 17 AVKDYLELYSYSVITAKNGQEAL--SLLVAYRPHLLISDIKMPQKDGYTLVRYIRQLPEF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----R 158 PV E I + Y F++ ++ + L + ++I + + Sbjct: 75 RLLPVIFLTERDSTGERIQGYEVGCDVYLPKPFEMEELKAVVRNLLERTQMIQSELGFSK 134 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 G + + + T REV+ L ++ G ++ +I L +S TV Sbjct: 135 RKSFGKQKNNFSQETEDKNQSLANYLHFTPREVQVLNLLTTGLSNGDIGQKLHLSPRTVE 194 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RKT T R+ + +A+ ++++ Sbjct: 195 KYVSSLLRKTETNNRAELVRFALDHHLI 222 >gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005] Length = 213 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + VL++ E V + +N +D + Sbjct: 55 MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D H ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVGDRTQAVVYAFRHHLV 208 >gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 220 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 9/170 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + K + + R L V + N Y Sbjct: 50 DLVLMDIRMPVMGGLEAVRKLRAMDPQVRI--LILTVSEEDDDLFEAIRAGANGYLLKNV 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + +I GLLAA LT RE+E L Sbjct: 108 DPDELISSIQKVAAGEAVI-------PGLLAARIVAELHKEATPEDVLEPLTSRELEVLG 160 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++S G ++ EIA L IS +TV N+I +I+ K R A AYA+R I Sbjct: 161 YLSTGASNREIAKQLFISEHTVRNHIQNILGKLHLTNRVQAAAYAIRQGI 210 >gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA +L IS TV +I I Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 251 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 26/186 (13%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 + + + + PF MA + D + +R ++ F G+++ Y Sbjct: 81 DPMVRYLAHAQRPFRWRESMAAFDGDAH---QRRMEQMMVDAFGH---------GLEDGY 128 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF----------KSYDVHW 180 +G + L K + EI LL A F ++ + Sbjct: 129 L-FPIHGRNGILGSLTLGGKPIDLSP---VEIALLEAVARKSFWRLLDLTGEAEALETVL 184 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A Sbjct: 185 PTETPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALA 244 Query: 241 VRNNIV 246 R+ ++ Sbjct: 245 FRHGLI 250 >gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family [Thiomonas sp. 3As] Length = 237 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 20/228 (8%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93 + + C + ++ +G H + L R L + ++ +++P Sbjct: 12 LQTITCDAQLFEIVVSMVHSLGFDHCSYGL-RMPL-PVSRPKVVLLTNYPRAWENRYTEK 69 Query: 94 EKDKYYNVLQRPTELFCPV------FHTLPENITPPA--GMDNRYCSLTFDVARIRIGLM 145 ++ T PV F + + G+ + + DV +GL+ Sbjct: 70 GYLAVDPTVRHGTHSLQPVVWSDAFFASSRDLWEEARSFGLCVGWAQSSRDVNST-MGLL 128 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKDFELTGREVECLTWIS 198 + G I L + + A+ M + + LT RE+E L W + Sbjct: 129 SVSRSGEPISEIELRDKEMQLAWLTQMVHLGMSRILTAKLMPAVTAPLTDREIEVLRWTA 188 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GKT+ EIA IL IS T N +IA+ + K ++ A+ A ++ Sbjct: 189 DGKTASEIADILNISERTANFHIANAIAKLHAPNKTAAVIRAGMLGML 236 >gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 425 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 19/231 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ C S + +G +F R + + +P + Sbjct: 197 FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPTEWRLRYDA 254 Query: 93 SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143 ++ V+Q P ++H M + S I Sbjct: 255 ADYLSIDPVVQHCRCRTVPLIWHDELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 314 Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195 ++ + ILR L + A M + D + +LT RE E L Sbjct: 315 MLSMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 374 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A ++ Sbjct: 375 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 425 >gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 238 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 19/231 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 ++ C S + +G +F R + + +P + Sbjct: 10 FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPTEWRLRYDA 67 Query: 93 SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143 ++ V+Q P ++H M + S I Sbjct: 68 ADYLSIDPVVQHCRCRTVPLIWHDELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127 Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195 ++ + ILR L + A M + D + +LT RE E L Sbjct: 128 MLSMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 187 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W GKT+ EI+ ILGIS TV ++++ RK R+ A+ A ++ Sbjct: 188 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|332706485|ref|ZP_08426546.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354369|gb|EGJ33848.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 230 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 89/215 (41%), Gaps = 21/215 (9%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 ++++Y+ S + ++ + Q+ S++ + P LV + + D Y V Q+P Sbjct: 17 SVSDYLEMSGYSVITAENGQQAL--SMIETYHPHLLVTDINMPRIDGYELVRKVRQKPPL 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV + I + Y F++ + + L + ++I + + Sbjct: 75 RLLPVVFLTELNSTNQRIKGYQSGCDVYLPKPFEMEELGAVIQSLLVRSQVIHTELRFPP 134 Query: 163 GLLAAYQ----ANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVILG 211 + S D++ + +LT RE + L ++ G ++ EI L Sbjct: 135 QTTKEPVDKPASRSINSVDINHQSENNTQAYALQLTEREQQVLNLLATGLSNVEIGNQLY 194 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S T+ +++S+ RKT T R+ + +A+ ++++ Sbjct: 195 RSPRTIEKHVSSLFRKTDTSNRAELLRFALEHHLI 229 >gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a] gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a] Length = 237 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 2/161 (1%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + R + + + + + Y + + + Sbjct: 76 MPRRGGIDATSAIKEAVPSAKIVMLTISDEEADLYDAIKAGAMGYLLKEISIDEVAADIR 135 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 ++ +I LL+ + A + D LT RE+E L +++G + + Sbjct: 136 AVYGGQSLISPS--MASKLLSEFAAMIKNKDDRPQLPTPRLTDREMEVLRLVAKGMNNRD 193 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS NTV N+I +I+ K +R A+ YAVR ++ Sbjct: 194 IAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 240 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 8/112 (7%) Query: 143 GLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVH--WGKDFELTGREVECL 194 L L I +D L E + +LA + D + + + RE+E L Sbjct: 129 ALGFLSVSREGIQKDPLAEDETQMRLQMLAEFSTTALLRLDDSAILTPEMKFSKRELEIL 188 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKTS EI++IL IS NTVN + ++ +K ++ YAV ++ Sbjct: 189 KWTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACYAVATGLI 240 >gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13] Length = 239 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 10/143 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRDRLWEIGLLAAY 168 V H L + +L V + G L P + RL E G+ + Sbjct: 92 VTHALQTGARGYLLKEMDADALVDAVKVVADGGSYLHPKVTHNLVREYRRLTENGVRSGV 151 Query: 169 QANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + + E LT RE E L +++GK++ I L IS TV N++ Sbjct: 152 RGGNGGGSTATTYQQIEIRRPLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHV 211 Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244 ++I++K R+ A+ A++N Sbjct: 212 SNILQKMNVNDRTQAVVVAIKNG 234 >gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC BAA-895] gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895] Length = 240 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86 R +L R + + T+ + ++ L R + F K+ V + +P Sbjct: 10 RRSMLVRFQEMATAEDVYTELQHQTQQLEYDYYALCVRHPVPFTRPKIS--VHTTYPQAW 67 Query: 87 VRCMALSEKDKYYNVL--QRPTELFCP----VFHTLPE--NITPPAGMDNRY--CSLTFD 136 V VL + + +F + G+ C + + Sbjct: 68 VAHYQSENYFSIDPVLKPENFRQGHLAWNDALFSEAQSLWDAARAHGLRRGATQCLMLPN 127 Query: 137 VARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKS--YDVHWGKDFELTGREVEC 193 A + + + D + + LL + ++ + + RE E Sbjct: 128 RALGFLSVSRASARHAPFAHDEIELRLQLLVRESLSALTRLEDEMVMTPEMRFSKREKEI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS EIA+IL IS NTVN + ++ +K ++ YA ++ Sbjct: 188 LKWTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 213 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 7/156 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + L ++ + + Y ++ + +L+ Sbjct: 62 GIEATELVKKFHSSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I R+ + L+ +Q M + ELT RE E L + +G ++ EIA +L Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVL 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +I I +K K+RS A+ YAVRN +V Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + +L V + G L PK L + + + A + Sbjct: 91 VTHALKTGASGYLLKEMDADALVEAVKVVADGGSYLHPKVTHNLVNEYRRLSAVGAGSSG 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + S LT RE E L +++GK++ I L IS TV N++++I++K Sbjct: 151 GYSSQIEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVN 210 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 211 DRTQAVVVAIKNG 223 >gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 229 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 43/86 (50%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 E+ D L+ RE+E L ++ G+T+ EIA L IS TV N+ Sbjct: 136 EVAATVLEAFRQMVGDDDVQTVFSPLSARELEVLELVAAGRTNREIAAQLDISNQTVKNH 195 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 I+SI+RK A R+ A+ YA+R + Sbjct: 196 ISSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|172036050|ref|YP_001802551.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171697504|gb|ACB50485.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 224 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 15/210 (7%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPT 106 A+ +Y+ + + ++ S+V P LV + + KD Y + Q P Sbjct: 16 VAVKDYLEMHGYTAITAQNGEDAF--SLVQKYRPHLLVSDIKMPYKDGYTLVKELRQLPE 73 Query: 107 ELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW- 160 PV T I + Y F++ ++ + L + +II + + Sbjct: 74 FRLLPVVFLTECDTTENRIQGYQVGCDVYLPKPFEMEELKAVIRNLLERSQIIQSEWRFS 133 Query: 161 -EIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNT 216 E + ++ + + EL T RE E L ++ G ++ EI L +S T Sbjct: 134 QEQAQIQKNLQQQQEAAKISIQAEMELLDLTRRESEVLDLLTMGLSNGEIGQRLHLSPRT 193 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + Y++S++RKT T R+ + +A+ +++V Sbjct: 194 IEKYVSSLLRKTDTSNRAELVRFALDHHLV 223 >gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 237 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 2/161 (1%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + R + + + + + Y + + + Sbjct: 76 MPRRGGIDATSAIKEAVPSAKIVMLTISDEEADLYDAIKAGAMGYLLKEISIDEVAADIR 135 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 ++ +I LL+ + A + D LT RE+E L +++G + + Sbjct: 136 AVYGGQSLISPS--MASKLLSEFAAMIKNKDDRPQLPTPRLTDREMEVLRLVAKGMNNRD 193 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS NTV N+I +I+ K +R A+ YAVR ++ Sbjct: 194 IAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 76/180 (42%), Gaps = 19/180 (10%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMD-- 127 LD + ++ P ++ + + E + + + + + V + ++ + +D Sbjct: 40 LDYLENNTLPDIVLLDLVMPEMNG-IEITEWMKKKYPNVKILVLTSYIDDEHVISAIDKG 98 Query: 128 -NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + Y + ++ + + +II ++ ++ +L Sbjct: 99 ADGYEMKDVEPEQLIKTIKHVLAGEKIIHPQA-----------QHVIETVSKKPHYANKL 147 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE E LT +++GKT+ EIA L +S T+ +++ I K R+ A YA++NN++ Sbjct: 148 SKRESEVLTEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVTDRTQAAIYAMQNNLI 207 >gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] Length = 242 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 13/229 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + + S + + +G +++ + +I+++ WP + Sbjct: 12 DYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWFEMY 71 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI-- 140 A + + + + P P + + F V Sbjct: 72 AREQFHRCDPIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPIHYD 131 Query: 141 -RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197 +G + + + + D + L++ + + ++ L+ E E L+W Sbjct: 132 DAVGAVSIAGEHPNLAPDARGALHLISIFTHSRLRALARATAGNPGRRLSRIEAEVLSWA 191 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GKT+ E A ILG+S V ++ RK ATK ++ +A A+ N + Sbjct: 192 ARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI 240 >gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + + S + + +G +++ + +I+++ WP + Sbjct: 12 DYVDAIEASKTSASVLSQFEKMIGDLGFHAYIMAGVPAPGQSLQHTILANGWPSEWFDLY 71 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI-- 140 A + +Y + + P + P + + F V Sbjct: 72 AREQFHRYDPIPRHCLSTLNPFAWSEAPYDRNDEPGAHEVMTRARDFRLNEGFCVPIHYD 131 Query: 141 -RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197 +G + L + + D + L++ + + ++ G+ L+ E E L+W Sbjct: 132 DAVGAVSLAGERPNLAPDARGALHLISIFTHSRLRALARATSGGQSRRLSRIEAEVLSWA 191 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GKT+ E A ILG+S V ++ RK TK ++ +A A+ N + Sbjct: 192 ARGKTAWETARILGVSERNVRWHLEEAQRKLETKNKTATVATALVNGEI 240 >gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp. subtilis str. 168] gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5] gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis] gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis BSn5] Length = 211 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCSLTFDVAR 139 P ++ + + D Q EL P V + ++ ++ S ++ Sbjct: 48 PDVILMDLVMEGMDGIEATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSK 107 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + R + +A + + + LT RE+E L I+E Sbjct: 108 AA----EIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCLIAE 163 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT+ EI L I+ TV +I +I+ K R+ A YA RN++V Sbjct: 164 GKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210 >gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp. subtilis str. 168] gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp. subtilis str. 168] gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp. subtilis str. SMY] gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yhcZ gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp. subtilis str. 168] Length = 214 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 11/175 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRY 130 ++ P ++ +++ E D + + + L E++ P + Sbjct: 40 RVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKA 99 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L + + + + + +M +D K ++LT RE Sbjct: 100 YQLKDTEPEELVKTRQVHGGEYKLSTAIMPHV------LTHMKNQHDPEKEKYYQLTRRE 153 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + LT I+ GK++ EIA L IS TV ++++++ K R+ A +AV+ N+ Sbjct: 154 KDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 208 >gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 234 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 19/228 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQKLDSIVSSDWPFDLVRCMA 91 +R+ + R+ A+ Y + + R L L S++P Sbjct: 12 FSRIEKPQHLGATLSRVAAILGY-EFVAYGIRRPLPLSNPPSLT---VSNYPARWQERYQ 67 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYCSLTFDVARIRIG 143 + V + PV + N + A G+ + + S T A +G Sbjct: 68 GLRLAEIDPVARAANASDRPVVWSSQGNDSDQAFWQEASSFGLMHGWSSATR-GAEGTLG 126 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198 ++ L G I + + AN+ + + + LT RE + L W + Sbjct: 127 VLSLARGGDAIDEVERDRNEFIVHWLANVAHAALAPFLPAAGEPEANLTSRETDVLKWTA 186 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GKT+ EI+ IL IS +TVN ++ +IM K T + A+A A ++ Sbjct: 187 DGKTAYEISRILSISESTVNFHVKNIMSKLGTSNKIQAVAKAALTGML 234 >gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 237 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 12/237 (5%) Query: 16 DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLF 69 DEQR+ P+ + + +I +D + + + E VG + + Sbjct: 4 DEQRSPEAPRAPSEENPIRVLI-VDDHALFRRGLEMVLAQEPDIEVVGEAADGSEAVTMA 62 Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 E D ++ + R + + + + + Sbjct: 63 GEMAPDIVLMD---VRMPRRGGIDATSAIKEAVPSAKIVMLTISDEEADLYDAIKAGAMG 119 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + + ++ +I LL+ + + + D LT R Sbjct: 120 YLLKEISIDEVAADIRAVYNGQSLISPS--MASKLLSEFASMIKNKDDRPQLPTPRLTDR 177 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L +++G + +IA L IS NTV N+I +I+ K +R A+ YAVR ++ Sbjct: 178 EMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 217 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ F+ + D L+ RE + LT I+ GK++ EI L IS TV N+I +I Sbjct: 134 ISEKMCGEFQRLALRNVHDEPLSRRETDVLTLIARGKSNKEIGDELYISEKTVKNHITNI 193 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 RK R+ A YAV+N IV Sbjct: 194 FRKIQVTDRTQAALYAVKNRIV 215 >gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319] gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319] gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319] Length = 227 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + +L V + G L PK L + A Q++ Sbjct: 91 VTHALQTGARGYLLKEMDADALIEAVKVVAEGGSYLHPKVTHSLVKEYRRLA--AQGQSS 148 Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + + L T RE E L +++GK++ I L IS TV N++++I++K Sbjct: 149 SYPHEPIEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNV 208 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 209 NDRTQAVVVAIKNG 222 >gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 213 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +L + + V + +N +D + Sbjct: 55 MDLVMP-ELGGVEATLKILDKWKDAKILVLTSYLDNEKIYPVIDAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D H ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILYLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto BEST195] Length = 215 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-----ENITPPAGMDNR- 129 ++ P ++ +++ E D + + + L E++ P + Sbjct: 40 RVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKA 99 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + L + + + + +M +D K ++LT R Sbjct: 100 YQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHV------LTHMKNQHDPEKEKYYQLTRR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + LT I+ GK++ EIA L IS TV ++++++ K R+ A +AV+ N+ Sbjct: 154 EKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 213 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA +L IS TV +I I Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 246 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 15/230 (6%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + R++ ++VG + F + R ++ +++ + WP D + Sbjct: 15 LIDALDEVRDPFEAQTRIFEHIQHVGFTSFTITRLPRPSDRLGPNMLFNMWPKDWLTHYD 74 Query: 92 LSEKDKYYNVLQRPTELFCPVF-------HTLPENITP------PAGMDNRYCSLTFDVA 138 ++ V+++ P P+ G+ +C D Sbjct: 75 RVGHYRFDPVVRQCYRTTEPFAWSEVPFDADQPDRARRVMDEAAAFGLGFGFCIPVHDAL 134 Query: 139 RIRIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + G+ L + + + R L +GL A A L+ RE + L+W Sbjct: 135 GFQGGVSLAGERIDLSPKIRRGLHMLGLYAWGAATRTTEDRRRSEPGRLLSARERDVLSW 194 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G+T +EIA ILG+S TV ++ S K + + + A+R + Sbjct: 195 AAMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVEALRKREI 244 >gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 192 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 161 EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + LLA + D+ + + RE E L W +EGKTS EIA+IL IS NTVN Sbjct: 105 RLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVN 164 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ +K ++ YA ++ Sbjct: 165 FHQKNMQKKFNAPNKTQIACYAAATGLI 192 >gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC 796-83] Length = 159 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 32 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 83 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 84 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 143 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 144 PNKTQVACYAAATGLI 159 >gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 207 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 74/179 (41%), Gaps = 17/179 (9%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127 L + ++ P ++ + + E + + ++ ++ V + ++ + +D Sbjct: 40 LSFLKENEQPDIVLLDLVMPEMNGIEITEILKKQYPQIKVLVLTSYVDDEHVISAIDKGA 99 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y + ++ + + RII + N+ ++ +L+ Sbjct: 100 DGYEMKDVEPQKLIETIHKVLNGERIIHPEA-----------KNVIEAVSKKPHFTNKLS 148 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N ++ Sbjct: 149 KREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207 >gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 213 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 L ++ + + Y ++ + +L+ +I R+ + Sbjct: 74 PSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK- 131 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ +Q M + ELT RE E L + +G ++ EIA +L IS TV +I Sbjct: 132 KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHIN 186 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I +K K+RS A+ YAVRN +V Sbjct: 187 KIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI] gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 213 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA +L IS TV +I I Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] Length = 215 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 F H LP +G Y + ++ + + + D L + Sbjct: 85 FSDQAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD---IASALISQ 137 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + + H+ LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 138 TLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKL 197 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 198 NLSDRTQAALYAVKNGIV 215 >gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 7/156 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + + L ++ + + Y ++ + +L+ Sbjct: 62 GIEATELVKKIYPSCRVLVFTMYEHDEYLMDALQVGADGYLLKDSSSEQVVAAIRMLYRG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I R+ + L+ +Q M + ELT RE E L + +G ++ EIA L Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEAL 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +I I +K K+RS A+ YAVRN +V Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2] gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1] Length = 223 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 21/217 (9%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 + + +G S L + ++ + ++P + + + T+ Sbjct: 7 LQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQS 66 Query: 109 FCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR----- 152 P+F H E + + ++ AR +G + L + Sbjct: 67 VLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGARGELGALSLSVEAENRAEA 124 Query: 153 -IILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + L + +L Y +++ K LT RE E L W + GKTS EI+VI Sbjct: 125 NRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVI 184 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S VN ++ +I RK +R A AV ++ Sbjct: 185 CNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 221 >gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] Length = 326 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 25/191 (13%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 + D Q LDS W + +L E PV H + + Sbjct: 153 YQVDPVQIHALDSCAPFTWSYCRPENTSLRRVLN---------EQHRPVSHYMQNH---- 199 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAA-YQANMFKSYD 177 N C +T + + G + + + D L IGLLA +Q ++F +D Sbjct: 200 ----NMRCGVTVPLHLPKGGFVTVTAIHTGLDTDNEIETVLARIGLLAHTFQEHVFPLFD 255 Query: 178 VHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 W + L+ RE ECL W +EG T+ EIA L S TVN ++ + RK R Sbjct: 256 EAWYHCRHVHLSPREQECLAWSAEGLTAKEIARKLHRSLATVNLHLNNAARKLGASNRVQ 315 Query: 236 AIAYAVRNNIV 246 A+ A+ ++ Sbjct: 316 AVVRAMHYRLL 326 >gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 236 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 12/218 (5%) Query: 40 DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99 + + +G H + +D+P D + Sbjct: 17 ASEREVFECIQRASRALGFQHVSYGFQAPLPLSRPKFTWLNDYPGDWQTHYMDAGYPAVD 76 Query: 100 NVLQRPTELFCPV------FHTLPENITPPAGMDNRY----CSLTFDVARIRIGLMLLFP 149 + R + P F +PE ++ +L + L P Sbjct: 77 PRIIRARQSSEPFIWNETLFSEVPELWADLQARGIQHGWSQSTLHEPGGIGMLSLCRSTP 136 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIA 207 L+ RL + LA F LT RE+E L W ++GK++ +IA Sbjct: 137 ITEQDLQTRLQHMQWLALLAHKAFSKLIRARIASNAPSLTERELEVLRWTADGKSAQDIA 196 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IL +S+NTV+ +I + + K ++ A+ AV + Sbjct: 197 EILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAVLLGL 234 >gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto BEST195] Length = 211 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCSLTFDVAR 139 P ++ + + D Q EL P V + ++ ++ S ++ Sbjct: 48 PDVILMDLVMEGMDGIQATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSK 107 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + R + +A + + + LT RE+E L I+E Sbjct: 108 AA----EIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFLIAE 163 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT+ EI L I+ TV +I +I+ K R+ A YA RN++V Sbjct: 164 GKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210 >gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 224 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + +L V + G L PK + + + E L + Sbjct: 91 VMRALQTGAAGYLLKEMDADTLIEAVRIVAEGGSYLHPK---VTHNLIREYRRLTTEKGG 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +V LT RE E L +++GK++ I L IS TV N+++SI++K + Sbjct: 148 AVVKQEVRRPLHL-LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVN 206 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 207 DRTQAVVVAIKNG 219 >gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA +L IS TV +I I Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144] gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus epidermidis RP62A] gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144] gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU144] gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU045] gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU028] Length = 207 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 19/174 (10%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCS 132 IV D + + ++E K Q+ E+ V + ++ + +D + Y Sbjct: 50 DIVLLDLVMPEMNGIEITEILK-----QQYPEIKVLVLTSYVDDEHVISAIDKGADGYEM 104 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + ++ + + RII ++ K+ +L+ RE E Sbjct: 105 KDVEPQKLIETIHKVLQGERIIHPQA-----------KSVIKAVSKKPHYTNKLSKREKE 153 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + +GKT+ EIA L +S TV +++ I K R+ A YA+ N ++ Sbjct: 154 VLKEMVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENKLI 207 >gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +L + + V + +N +D + Sbjct: 55 MDLVMP-ELGGVEATLEILDKWKDAKVLVLTSYLDNEKIYPVIDAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D H ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] Length = 215 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRSGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ASTLISQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + H+ LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 QEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 71 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE ECL W + GKTS EIAVILG+S TVN +I + K R A+A A+ Sbjct: 5 PLSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIALSQG 64 Query: 245 IV 246 ++ Sbjct: 65 LL 66 >gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 7/156 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + D L ++ + + Y ++ + +L+ Sbjct: 62 GIEATDLVKKNYPNCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I R+ + L+ +Q M + ELT RE E L + +G ++ EIA L Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEAL 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +I I +K K+RS A+ YAVRN +V Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 215 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +L + + V + +N +D + Sbjct: 57 MDLVMP-ELGGVEATLEILDKWKDAKVLVLTSYLDNEKIYPVIDAGA----------KGY 105 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D H ELT RE + L +++G Sbjct: 106 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 165 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 166 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 210 >gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 209 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 13/180 (7%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 DL ++ L IV D + + ++EK K L + I+ Sbjct: 43 DLHAQKILPDIVLLDLVMPEMNGIEVTEKLK--KEFPSIKILVLTSYADDEHVISAINKG 100 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + Y + + + + +II + + + +L Sbjct: 101 ADGYEMKDVEPDELIQSIHKVLEGNKIIHPE-----------VQKVIEDVAKKPHHINKL 149 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE E L +++GKT+ EIA L +S TV +++ I K R+ A YA+ N ++ Sbjct: 150 SNRETEVLKEMAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENKLI 209 >gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 122 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 P +D R F R +G + IIL A N+ + + Sbjct: 6 AMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILH---------ALDAYNIVRRNE-- 54 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E + W ++GKTS EI IL +S +TVN Y+ + ++K R+ +A Sbjct: 55 ESAHNALSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 114 Query: 240 AVRNNIV 246 A+R ++ Sbjct: 115 AIRLKLI 121 >gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 237 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMD 127 ++ S++P V ++ P+ + G+ Sbjct: 52 FMLQSNYPQTWVDRYVSQNYFAVDPTVRHGLSQMSPLIWRADSQTQSVEFWDEAEHHGLR 111 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHW 180 + +C + IGL+ + G I L E G +A Y +M Sbjct: 112 HGWC-MPSISRTGAIGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLAKFVP 170 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L W + GKT EI I+ + TV ++ + MRK ++ A A Sbjct: 171 EYAVELTARERETLQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKA 230 Query: 241 VRNNIV 246 ++ Sbjct: 231 AMLGLL 236 >gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 L ++ + + Y ++ + +L+ +I R+ + Sbjct: 74 PSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVLAAIRMLYRGDSVI-HPRMTK- 131 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ +Q M + ELT RE E L + +G ++ EIA +L IS TV +I Sbjct: 132 KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHIN 186 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I +K K+RS A+ YAVRN +V Sbjct: 187 KIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA +L IS TV +I I Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 10/134 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L + + +G LL P+ L A Sbjct: 95 VYEALRAGASGFLLKDAPPSQLLHGIRTVAMGAALLDPEV----------TRQLVGRYAA 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +D LT RE+E L I++G ++ EIA L IS+ TV +++ I+ K + Sbjct: 145 RIRPVEDGAPRDLPLTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKLGLR 204 Query: 232 TRSGAIAYAVRNNI 245 R A+ YA R + Sbjct: 205 DRVQAVVYAYRRGL 218 >gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 226 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 10/189 (5%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITP-- 122 + Q +V P +V + L + V++R V T+ E+ Sbjct: 33 EASDGQAAIRLVDKLSPDVVVVDINLEGLNGLEATRVIRRRYPNVGVVILTMHEDDEQLF 92 Query: 123 --PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYD 177 Y + R+ + ++ KG I+ + L +A+ F+ + + Sbjct: 93 NAIKAGAAAYVTKDTSPDRL-VDIIRRVGKGEYIINENLITKPFVASRVLKQFRDLAALE 151 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT REVE L I+ G ++ EIA + IS TV N+I SI+RK A R+ A+ Sbjct: 152 DEENLFTPLTSREVEILDCIARGMSNKEIARQMSISDQTVKNHITSILRKLAVNDRTQAV 211 Query: 238 AYAVRNNIV 246 YA++ + Sbjct: 212 IYALKRGWI 220 >gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA L IS TV +I I Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 21/235 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + W+ + + +G S L + ++ + ++P Sbjct: 5 DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139 + + + T+ P+F H E + + ++ AR Sbjct: 65 DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122 Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREV 191 +G + L + + L + +L Y +++ K LT E Sbjct: 123 GELGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSWEK 182 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + GKTS EI+VI S VN ++ +I RK +R A AV ++ Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237 >gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 455 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + + L+ RE+E L ++ G ++ EIA L IS NTV ++ +I K +R+ A Sbjct: 1 MELPNNEPLSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEAT 60 Query: 238 AYAVRNNI 245 YA+RN I Sbjct: 61 LYAIRNGI 68 >gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] Length = 294 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE+E L ++EG +++EI+ +L IS +TV ++I I K R+ A +A R Sbjct: 231 PTPLTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDRTQAAVWAAR 290 Query: 243 NNIV 246 +N++ Sbjct: 291 HNLI 294 >gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia] gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 75/235 (31%), Gaps = 20/235 (8%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDL 86 R L + A +G H F L R L K ++ S++P Sbjct: 5 REKYLNGFATAKSEADVFLEFSADVRALGFDHCSFGL-RIPL-PISKPQFMLQSNYPQTW 62 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVA 138 V ++ P+ G+ + +C + Sbjct: 63 VERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQFWEEAGQHGLRHGWC-MPSVSR 121 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191 IGL+ + G I L E G A Y +M + ELT RE Sbjct: 122 TGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVRER 181 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + GKT EI I+ + TV ++ + MRK ++ A A ++ Sbjct: 182 EALQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236 >gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGR 189 + R + GL++ + +D L+E+ + A + + G+ ++ R Sbjct: 139 IAFPVHADRGQCGLVVFLGSEMTLQQDALYEVHARCFSLFAAVARIRPGDAGRMRAISKR 198 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+ECL + G TS+EIA +L +S +T N Y+ +K R+ A+A A+R ++ Sbjct: 199 ELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 222 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 11/208 (5%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + E GAS +V + L+ V P ++ + L+E D V + Sbjct: 13 IREGLQRVLE--GASGLQVVGHAAAADPLLER-VRQLAPDVVLLDLGLAEDDARDLVGRL 69 Query: 105 PTELFCPVFHTLPENITPPAGMD------NRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 PV + + P A + Y + A + + +I + Sbjct: 70 GRAPSAPVVVGITDRADPQALLGLVQAGLGGYLLANREAAGLAEAIRACTAGIFVIDAEI 129 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + E+ + + +V + L+ RE+E L+ I+ GK++ ++A L IS TV Sbjct: 130 MSELAHDSPLYRYVPAPEEVERAR--LLSQRELEVLSRIARGKSTAQVARELYISPKTVR 187 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 N+++ IM+K + R+ A+ +A+R ++ Sbjct: 188 NHLSHIMQKLGVRDRTQAVLFALRVGLI 215 >gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] Length = 210 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 +R+ E + M + D + ELT RE E L ISEGK++ EIA L I+ T Sbjct: 122 ERVLEPEVTTKMMEKMSRRNDPVLHE--ELTNRENEILMLISEGKSNQEIADELFITLKT 179 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++++I+ K + R+ A YA ++ +V Sbjct: 180 VKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 247 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE E L W+ GKT+ EI+ IL IS+ TV N++ +I+RK + RS A A + + Sbjct: 183 MTKRESEILQWLHMGKTNWEISSILDISQLTVKNHVQNILRKLDVQNRSQAAVKAAKLGL 242 Query: 246 V 246 + Sbjct: 243 I 243 >gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74] Length = 147 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + IL D L ++ LL + A Sbjct: 20 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 71 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 72 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 131 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 132 PNKTQVACYAAATGLI 147 >gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 10/134 (7%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D + V + G L P + L +RL G + Sbjct: 98 FPALRAGARGYLTKDAGGEEILRAVRSVVSGQAGLAPSVQRRLLERLDRPGTVVT----- 152 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT REVE L I+EG ++ EIA L +S TV +I ++ KT K Sbjct: 153 -----SPEEAPDGLTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKD 207 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA R +V Sbjct: 208 RAQAVRYAFRKGLV 221 >gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 213 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA L IS TV +I I Sbjct: 134 ITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 210 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 14/181 (7%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAG 125 +K + P ++ + + E D + + P V F + Sbjct: 37 RKGSELALQLKPDIILMDLVMDEMDGVEATRAIIKEWPEAKIVVVTSFLDDEKLYPVIEA 96 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 Y T + I + + ++ E + + M + + D Sbjct: 97 GATSYLLKTSRASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD-- 148 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 149 LTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 245 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 73/229 (31%), Gaps = 16/229 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMA 91 + R + + G F++ D ++ WP Sbjct: 16 IERFQTTTSPRALIDAVRDAAAAYGYRSFVIAAAPKLACNAFDKRVLLRHWPEAWFGQYL 75 Query: 92 LSEKDKYYNVLQRPTELFCPV-------------FHTLPENITPPAGMDNRYCSLTFDVA 138 + + + + + M +C F + Sbjct: 76 QDNYQDHDPIAAHARQQTRAFCWSDAPWDRSDKKTAAVMDCAAHDYDMRRGFCVPIFGMR 135 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWI 197 + P+ + L+A Y N + + + L+ RE E + W Sbjct: 136 GYEAAISFGGPEIDA-SPAATAAMELIAIYAMNQLMTMREPPARRQTTLSPREREVVAWA 194 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GKT+ + A IL IS +TVN ++AS MRK T++ A+ ++R + Sbjct: 195 AVGKTAWDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRGEI 243 >gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1] gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1] Length = 245 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 11/145 (7%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQA 170 F L ++R+ L ++ +I G L P R++ RL + G +A A Sbjct: 101 FPALQCGADGYLLKEDRFEVLVEELQKIVRGQPPLSPAIARRLLSHFRLGDSGSMALDSA 160 Query: 171 N--------MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + + V+ D E LT RE E LT++S+G T EIA ++GI TVN++I Sbjct: 161 HAPGDFQPARPAAPAVYAEPDHERLTPRETEVLTYLSKGFTIKEIAGLMGIKWFTVNDHI 220 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +I RK +R+ A A + +V Sbjct: 221 KAIYRKLNVSSRAEAAVLASKQGLV 245 >gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 251 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 10/178 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128 + + + + PF MA D + +R ++ F H L + + P G + Sbjct: 81 DPMVRYLTHAQRPFRWRESMAAFNSDAH---RRRMEQMMVDAFGHGLEDGYLFPIHGRNG 137 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 SL+ I + + + + R W + L ++ + + LT Sbjct: 138 ILGSLSLGGRPIELSPVEIALL-EAVARKTFWRLLELTGEA----EALETVLPAETPLTR 192 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ ++ Sbjct: 193 REMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGLI 250 >gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens DSM 7] Length = 214 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R + R + + N D + K ++LT RE + L I++GK++ EIA L Sbjct: 115 REVYSGRYRLSADIVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLF 174 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS TV ++++++ K R+ A YAV+ N+ Sbjct: 175 ISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNV 208 >gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 216 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 79 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 136 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA L IS TV +I I Sbjct: 137 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 191 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 192 FKKLNVKSRSQAVIYAVRNQLV 213 >gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens GS-15] Length = 246 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 165 LAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA Y + D+ LT RE+E ++W++ GK EI+VILGIS TV + Sbjct: 159 LAPYFHEALRRTVQTDLPSACLATLTPREIEVISWLANGKNYWEISVILGISERTVKFHT 218 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++I++K RS A+A A+ ++ Sbjct: 219 STIVQKLGAANRSHAVAIAISTGLI 243 >gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 251 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 78 VSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHTL--PENITPPAGMDNR 129 + ++P D + L++ +K Y RP V P+ + + Sbjct: 57 LVCNYPDDWMEHYRLNQYEKKDPVPQYGISASRPFTWASVVAQRKWHPDQMKVMHEAEEA 116 Query: 130 Y----CSLTFDVARIRIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYD------ 177 ++ + + + DR L ++ LA F + Sbjct: 117 RLCDGIAVPVCGVNGELAGFGIASSHGGVSPDRTLLHKVQALAIQFHLAFTELEKIETPL 176 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT RE E ++W +EGK+ IA ILG+S +TV ++ ++ +K R+ A Sbjct: 177 TENLAEVYLTEREKEIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLAT 236 Query: 238 AYAVRNNIV 246 A+R+ ++ Sbjct: 237 VKAIRHGLI 245 >gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] Length = 238 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 24/237 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLL+ + + + ++ +G + + + E K +I+ +++P Sbjct: 6 EDLLSAFLVVKNEYQLFDIVKSIASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141 + + K +Q P+ T E +R Sbjct: 64 KRYVEQQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189 IG + R D+L E A Y + + DV + K + LT R Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKTS EIA ILG++ TVN ++++ M+K + A AV ++ Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627] gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627] Length = 228 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 11/136 (8%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170 H L +T + NR + + + D L ++ LL + A Sbjct: 101 HGLRRGVTHYFMLPNRALGF--------LSFSRSSTREIPVPGDELQLKMQLLVRESLMA 152 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 153 LMRLNDEMVMTPEMHFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 212 Query: 231 KTRSGAIAYAVRNNIV 246 ++ YA ++ Sbjct: 213 PNKTQVACYAAATGLI 228 >gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1] gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1] gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1] Length = 238 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 16/186 (8%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRYCSLTF 135 I+ +++P + + + +Q P V+ + N S Sbjct: 53 IMLNNYPEAWQKRYVKQQYVRVDPTVQHCMLSLQPLVWSSQSANTQSQKDFWEEARSYGL 112 Query: 136 DVARIRIGLMLLFPKGRIILR---DRLWEIGLLAAYQANMFKSYDVHWGK---------- 182 +V + + +G + L D+L E A Y + S VH Sbjct: 113 NVGWAQSSRDFIGTRGMLTLARSTDQLLEKEQKAQYTNMFWLSQTVHSSIAKIVNETEFA 172 Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE E L W +EGKTS EIA ILG++ TVN ++ + M+K + A A Sbjct: 173 QFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRA 232 Query: 241 VRNNIV 246 V I+ Sbjct: 233 VMLGIL 238 >gi|220932804|ref|YP_002509712.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994114|gb|ACL70717.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 209 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 44/95 (46%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 I R E L + K K LT RE E L + G ++ +IA L Sbjct: 113 EAIKAARRGEPVLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLC 172 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++++I++K K R+ A+ A+ NN+V Sbjct: 173 ISETTVKTHVSNILKKLDVKDRTQAVIKAIENNLV 207 >gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510] gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510] Length = 287 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA + A + D +L+ RE E L W S GKTS E ++LG+S TVN Y+ + Sbjct: 206 LALHSAMVSSEPDDAEEVPCKLSPREREVLDWASRGKTSWETGMVLGLSEKTVNFYLRNA 265 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K T+ A A AVR ++ Sbjct: 266 CQKMNAATKVQAAAQAVREGLI 287 >gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 184 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 8/142 (5%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + ++ +I R+ + L Sbjct: 48 CRVLVLTMYEHDEYLMAALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVI-HPRMTK-KL 105 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q +S + ELT RE E L + +G ++ EIA L IS TV ++ I Sbjct: 106 ITYHQQTKSESN------ENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHVNKI 159 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 RK K+RS A+ YAVRN +V Sbjct: 160 FRKLNVKSRSQAVIYAVRNQLV 181 >gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ D LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEDSVPNTLGTLTEREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 272 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 17/231 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVRCMA 91 + W + + +G +L+ + ++ + + + +P + Sbjct: 23 FTSLAKDANRCDWERLLNKVLRQLGFGSYLISLGPVAPRDTDPLAGLITTFPKRWLEHYR 82 Query: 92 LSEKDKYYNVLQRPTELFCPVF------------HTLPENITPPAGMDNRYCSLTFDVAR 139 + +L+ P+F E L +++ R Sbjct: 83 CDGLIEIDPILRHCRRELVPLFWDSERRRARGRSRHFWEQREQHGLRSGVSIPLRYEMLR 142 Query: 140 IRIGLML---LFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++++ +L Y A + +LT +E++CL Sbjct: 143 GTLSVAFDDTQITEQKGFSNPAVYQLFMLIPYLLAGIRHQLQRPAQPRQDLTPKEMDCLY 202 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W SEGKT+ EI+ IL S T++ ++ + RK + +R A++ AV +V Sbjct: 203 WASEGKTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACGLV 253 >gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 292 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L+ +G +L R+ E GLL+ Q + ++ + F+LT RE E L W++ GKT+ EI Sbjct: 195 LWHQGERLLFTRI-EPGLLSI-QRHAAQAEPEALARIFQLTAREAESLYWVALGKTNKEI 252 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 IL IS TVN ++ + K +TR+ A A Sbjct: 253 GEILQISPRTVNKHLEHVFEKLGVETRTAAAA 284 >gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] Length = 215 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 F H LP +G Y + ++ + + + D L + Sbjct: 85 FSDQAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD---IASTLISQ 137 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + + H+ LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 138 TLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKL 197 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 198 NLSDRTQAALYAVKNGIV 215 >gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 222 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 11/220 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + +++ + + E GA +V E LD V P ++ ++L Sbjct: 1 MLKILVATGRPLVREGLQRILE--GAPGLQVVGHAAGPEPLLDR-VRELVPDVVLLDLSL 57 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------NRYCSLTFDVARIRIGLML 146 + D V + PV + + P A + Y + A + + Sbjct: 58 AAGDARELVGRIGRMPGSPVVVGITDRADPHALLGLVQAGLGGYLLANREAAGLSEAIRA 117 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 +I + + E+ + + +V + L+ RE+E L+ I+ GKT+ ++ Sbjct: 118 CTAGIFVIDAEIMSELASDSPLYRYVPAPEEVERAR--LLSQRELEVLSRIARGKTTAQV 175 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV N+++ IM+K + R+ A+ +A+R ++ Sbjct: 176 ARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGLI 215 >gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum 12472) Bound To C6-Hsl gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators [Chromobacterium violaceum ATCC 12472] Length = 265 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 14/187 (7%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENIT 121 Q Q+++ +++ +P D + + ++ +++ E F + + Sbjct: 68 QIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKGSEEKRFI 127 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLF------PKGRIILRDRLWEIGLLAAYQANMFKS 175 A + +TF A R + + P L L + A + Sbjct: 128 AEASSNGMGSGITFSAASDRNNVGSILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIAN 187 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + L+ RE + W+S GKT+ EIA IL IS TV ++A+++RK R+ Sbjct: 188 LPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTH 247 Query: 236 AIAYAVR 242 AI + Sbjct: 248 AIVLGMH 254 >gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 233 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 3/156 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + + V + Y + + + + Sbjct: 76 GIDAASAIKREVPTAKIVMLTVSDDEADLFEAIKAGAVGYLLKSIPPHEVASAVRAVHNG 135 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +I L+ + A S D LT RE+E L ++EG+ + EIA Sbjct: 136 LSLISPS--MASKLIVEFAALARGSDDRPSRVPAPHLTARELEVLKLVAEGRANREIARK 193 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS NTV N++ +I+ K +R A+ YAVR + Sbjct: 194 LFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 229 >gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 208 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 11/210 (5%) Query: 44 SWTMRMYALTEYVGASHFLLVRWDLFQEQK-LDSIVSSDWPFDLVRCMALSEKDKYYNVL 102 + AL + HF+LV + L+ S D + ++ Sbjct: 2 DFFRLFKALAAVHDSEHFVLVELSTDDKPLDLNRGHSLHNVSDAFLDAEAVSAKRDDPLV 61 Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI---RIGLMLLFPKGRIILRDRL 159 P TP ++ + R GL+LL + R + Sbjct: 62 ACLLTSTAPKSFDATTTKTPLIARCGSKSAVVVPLHTAVGKRFGLILLRNRERPL----H 117 Query: 160 WEIGLLAAYQANMFKSY-DVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNT 216 E+ L+A + +F+ Y +V D L+ RE++ ++W SEGKTS EIA+ILG+S +T Sbjct: 118 SEVALIAYDASIVFQRYFEVVLSLDSISGLSEREIQIVSWTSEGKTSSEIAIILGLSEHT 177 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 VN+YIA+I+RK R+ +A A+RN ++ Sbjct: 178 VNSYIAAILRKLQVVNRAQMVASALRNGLI 207 >gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 219 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 5/183 (2%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 DL + D +V D ++ + + V L F+ Sbjct: 41 AAVDLAGRLRPDVVVM-DVRMPVLDGIEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEAL 99 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + A++ G+ + ++ + + L+ Y A + + D Sbjct: 100 RAGASGFLLKDAPPAQLLHGIRTVASGAALLAPEVTRQ--LVGRYAARIRPAEGTPA--D 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE+E L I++G + EIA L IS+ TV Y++ I+ K + R A+ YA R Sbjct: 156 VGLTPRELEVLRLIADGLANSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRT 215 Query: 244 NIV 246 +V Sbjct: 216 GLV 218 >gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida] gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 248 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 17/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + + + ++L K D ++ ++P Sbjct: 12 IITKINSSSSNDQINQCLIEVANTLNCEYYLFSIISNKSMIKPDVLILDNYPQKWRDHYD 71 Query: 92 LSEKDKYYNVLQRPTELFCPVF---------HTLPENITPPAGMDNRYCSLTFDVAR--I 140 + KY ++ P+ T N+ A Y +F + Sbjct: 72 ETNLIKYDPIVDYCFFNHSPILWDIFGKKTLKTNKPNVIQEAKSLGLYSGFSFPIHSVNG 131 Query: 141 RIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECL 194 G++ + D L+ ++ A + ++ + +LT RE ECL Sbjct: 132 SFGMISFAHSNKKQSTDCLFSTACMYIPLIIPALLDSYYRINKNNTESTHDLTKREKECL 191 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W EGK+S EI++ILG + TV ++ + K T R +++ A+ + Sbjct: 192 AWACEGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAILTGAI 243 >gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 237 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMD 127 ++ S++P V ++ P+ + G+ Sbjct: 52 FMLQSNYPQTWVDRYVSQNYFAVDPTVRHGLSQMSPLIWRADSQTQSVEFWDEAEHHGLR 111 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHW 180 + +C + IGL+ + G I L E G +A Y +M Sbjct: 112 HGWC-MPSISRTGAIGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLARFVP 170 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L W + GKT EI I+ + TV ++ + MRK ++ A A Sbjct: 171 EYAVELTARERETLQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKA 230 Query: 241 VRNNIV 246 ++ Sbjct: 231 AMLGLL 236 >gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 212 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 17/135 (12%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L T ++ + + + G +L P+ + + Sbjct: 90 VYPALEAGATSYMLKTSKASDIADAIRKTHGGQSILEPE-------------VTGKMMSR 136 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M K H ELT RE+E L ++EGKT+ EI L I+ TV ++++I+ K + Sbjct: 137 MRKPSHPHE----ELTNREMEILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQ 192 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ YA ++++V Sbjct: 193 DRTQAVIYAFQHSLV 207 >gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLNSLTD 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 214 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y V + + ++ +I I + + N S G ELT Sbjct: 102 GYLLKDVSVDALISTIKAVYAGETVIAP----RITQMLLREVNNPVSGGPASGGLAELTA 157 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE E + I+EGK + EIA L IS TV N+I+SI RK R+ A YA++ N+ Sbjct: 158 REREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTNL 214 >gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 186 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 8/142 (5%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + ++ +I R+ + L Sbjct: 50 CRVLVLTMYEHDEYLMAALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVI-HPRMTK-KL 107 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q +S + ELT RE E L + +G ++ EIA L IS TV +I I Sbjct: 108 ITYHQQTKSESN------ENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 161 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 RK K+RS A+ YAVRN +V Sbjct: 162 FRKLNVKSRSQAVIYAVRNQLV 183 >gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5] gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5] Length = 215 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 10/175 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRY 130 ++ P ++ +++ E D + + + L E++ P + Sbjct: 40 RVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKA 99 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L + + G L + + +M +D K ++LT RE Sbjct: 100 YQLKDTEPEELVKTLRQVHAGEYKLSTAI-----MPHVLKHMKNQHDPEKEKYYQLTRRE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + LT I+ GK++ EIA L IS TV ++++++ K R+ A +AV+ N+ Sbjct: 155 KDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 301 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVE 192 A + + P G + L GL + + D + + LT RE E Sbjct: 186 WLQSASGAGEIFMPMPGGGRLGARHLGASGLTESMLLLRLAAADTPPRQPEVPLTPRETE 245 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L W+++GKT+ +IA ILG+S TVN ++ I K +TRS A A A + Sbjct: 246 VLAWLAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRSAATAVASK 295 >gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68] gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6] gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68] gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6] gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 210 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + R++ + + M + D + Sbjct: 94 IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNDPVLHE 147 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA + Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205 Query: 243 NNIV 246 + +V Sbjct: 206 HGLV 209 >gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 248 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 36/250 (14%) Query: 17 EQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYVGASHF 61 E + S + + RSDL +++ + + R+ E G+++ Sbjct: 14 ETKLSRLHRISGRSDLFPKLVSMQKLIDAQNFALYRLSGSGLPSKQRLVCELENWGSANP 73 Query: 62 LL--VRWDLFQEQKLDSIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 ++ + + E ++ I S P + +E + QR P Sbjct: 74 VMNKAFVEAYGEAMIEHIEKSLLPLMWNGRDSDSTAETPDFAAFTQRLKPHLLPFAGV-- 131 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSY 176 + + + G ++ K + D + E+ G + Sbjct: 132 --------------AFPVRLGSVGNGYVVFTAKFMDVASDMIVELHGRSCQIMMELLSLD 177 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + L+ RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R A Sbjct: 178 ERRSPAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQA 237 Query: 237 IAYAVRNNIV 246 IA A+R + Sbjct: 238 IAKAIRFGYI 247 >gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 212 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 21/203 (10%) Query: 55 YVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQR 104 +G S +L + D ++ ++ S P ++ + + + D + Sbjct: 14 RIGVSSYLTAQADIEVVAEAGDGEEAVTLALSHRPDIILMDLVMPKMDGIEATAAIRREW 73 Query: 105 PTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P V L + PA Y T I + I+ + ++ Sbjct: 74 PEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSRAGDIAKAIRDTHAGQSILEPEVAGKL 133 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 M + + + +LT RE+E L +S G ++ EI L IS TV +++ Sbjct: 134 ---------MSRMHKKPPAEHEQLTARELEVLELMSRGMSNQEIGDALYISLKTVKVHVS 184 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +I+ K R+ A+ YA + N+ Sbjct: 185 NILSKLGVHDRTQAVIYAFKENL 207 >gi|315647821|ref|ZP_07900922.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276467|gb|EFU39810.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 222 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + D L + R+ G++ L P +L + + L +++ Sbjct: 90 VLPAIRAGARGYLLKDIEPEELVAAIRRVFQGMVELHPDAAGLL---MTHVTLPEGAESS 146 Query: 172 MFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ +LT RE E L I+ G + EI+ L I+ TV +++ ++ K Sbjct: 147 SGPGRQEEAVQELDKLTRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGV 206 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A YA+++ IV Sbjct: 207 ADRTQAAIYALKHGIV 222 >gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 251 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 10/178 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128 + + + + PF +A KD +R ++ F H L + I P G + Sbjct: 81 DPMVRYLAHAQRPFRWRESLAAFGKDA---QRRRMEQMMVDAFGHGLEDGYIFPVHGRNG 137 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 SL+ + + + + + R W + L + ++ + D LT Sbjct: 138 ILGSLSLAGKPVELSPVEIA-LFEAVARKSFWRMLEL----KDEAQALETVLPADTPLTR 192 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++EG TS EI +L IS +TV+ Y+ + K K R A+A A R+ ++ Sbjct: 193 REMEILHYLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHRLI 250 >gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 234 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + + ++ PV + N + A G+ + Sbjct: 53 LMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAH 112 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L + I + + + AN+ + + D Sbjct: 113 GWSSASR-GADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 171 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 172 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 231 Query: 244 NIV 246 ++ Sbjct: 232 GML 234 >gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 211 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 19/221 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-------KLDSIVSSDWPFD 85 + R++ D + A+ E S++++ EQ + IV D+ Sbjct: 1 MKRILIADDHAVVRSGLRAIVET--QSNWIVAGEATNGEQAVGLAVETMSDIVIVDYSMP 58 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L+ + +S + K ++ E+ H E ++ R D + I + Sbjct: 59 LMNGLEVSRRLKALDLRT---EVLILTMHEDEELLSEAVLAGVRGFLFKSDAKKHLISAI 115 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 GR L E LL YQ N H D LT RE + I+EG T+ Sbjct: 116 EALLDGRPYFTSALVE-KLLHDYQLNK------HGRSDMLLTSREQSVVQLIAEGHTNRS 168 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++VIL +S TV + AS MRK + + + YA+R +V Sbjct: 169 MSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIRKKLV 209 >gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 251 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 6/151 (3%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 ++ R ++L PV H + +N P + + + + + + + D Sbjct: 102 TSLQNRLSDLNKPVTHYMCDNNMPSGATVPLHLP---NGGFVTVTGIHTGAGHELDIHDV 158 Query: 159 LWEIGLLA-AYQANMFKSYDVH--WGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 L E+ LLA +Q +F +D + L+ RE ECLTW +EG T+ EIA L S Sbjct: 159 LAELSLLALTFQECVFPLFDSSILTCRHVRLSKRERECLTWAAEGLTAKEIARKLNRSIA 218 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ + RK R A+ A+ ++ Sbjct: 219 TVTLHLNTAARKLGASNRVQAVVRAMHYRLL 249 >gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis] Length = 229 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 24/217 (11%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + + + + ++ D E IV P ++ + + + ++ Sbjct: 15 FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70 Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 EL+ V H L + +L V + G L PK Sbjct: 71 LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207 + + + E LA + ++V+ L T RE E L +++GK++ I Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS V N++++I++K R+ A+ A++N Sbjct: 188 ESLFISEKAVKNHVSNILQKINVNDRTQAVVVAIKNG 224 >gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus CNRZ1066] gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus thermophilus ND03] Length = 214 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136 P +V + + E D L+ E + + E I P Y T Sbjct: 51 PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + ++ I + N K +D H +LT RE + L Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPNLHDDLTARERDILAL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209 >gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] Length = 210 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 I+ D V + ++ K + + +F +++ + Y Sbjct: 49 DIILMDINMPNVNGIKAAKMIKSNDPKNKI--MFLTIYNDKEYLMEALKIGVEGYILKDA 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + ++ G I + EI L + +LT RE E L Sbjct: 107 DSDELIKAIRIISNGGVYIHPSLIREIESLEKNECKK------------DLTDREFEILN 154 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+EG ++ EIA L +S TV N++ +I RK K R+ A Y ++NN Sbjct: 155 LIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203 >gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 71 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 130 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 131 SGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLNSLTD 189 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 190 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 247 >gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 215 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + H + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEHSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 4/170 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + V L F+ + + Sbjct: 52 DVVVMDVRMPVLDGIEATRLLAGAGVAHPVKVLVLTTFNLDEYVYEALRAGASGFLLKDA 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 R+ G+ + ++ + L A + + LT RE+E L Sbjct: 112 PPDRLLHGIRTVATGAALLDPEVTRR---LVGRHAARIRPV-PGAAPEVPLTPRELEVLR 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++EG ++ EIA L IS+ TV +++ I+ K + R A+ YA R+ + Sbjct: 168 LLAEGLSNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL 217 >gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 223 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPGKDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAAELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ D LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYADHLPSGEDPVPDALHTLTDREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|332523307|ref|ZP_08399559.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314571|gb|EGJ27556.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 213 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +LQ+ +E V + +N ++ + Sbjct: 55 MDLVMP-ELGGVEATLEILQKWSEAKILVLTSYLDNEKIYPVIEAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K+++ H ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILYLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208 >gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Acinetobacter calcoaceticus PHEA-2] Length = 238 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 24/237 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLL+ + + + + +G + + + E K +I+ +++P Sbjct: 6 EDLLSEFLIVKNEYQLFEIVKSTASKLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIR 141 + + K +Q P T E +R Sbjct: 64 KRYMEQQYVKIDPTVQHCMVSLQPLVWSSQFAKTQEEKDFWEEARSYGLNVGWAQSSRDF 123 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------------DFELTGR 189 IG + R D+L E A Y + S VH + LT R Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLSQTVHSSIAKVVNEVEFAQFNLYLTNR 181 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKTS EIA ILG++ TVN ++ + M+K + A AV ++ Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 10/139 (7%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 E +F + + L V ++ G + + + I + Sbjct: 93 ETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVYEG------EPVVPSSLAMKMIAEFS 146 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 S + ELT RE E L ++S G ++ EIA L IS NTV N++ I+ Sbjct: 147 RTAETRMPSSESV----TELTEREREVLQYLSAGASNKEIARALFISENTVRNHVRHILD 202 Query: 227 KTATKTRSGAIAYAVRNNI 245 K R+ A AYAVRN I Sbjct: 203 KLHLSNRAQAAAYAVRNGI 221 >gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 213 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVIAAIRMLYRGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA L IS TV +I I Sbjct: 134 ITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 223 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 76/222 (34%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAHELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ + LT REVE L +++G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLHTLTEREVEVLKLVAKGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150] gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150] Length = 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136 P +V + + E D L+ E + + E I P Y T Sbjct: 51 PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + ++ I + N K +D H +LT RE + L Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209 >gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 236 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + + ++ PV + N + A G+ + Sbjct: 55 LMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAH 114 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L + I + + + AN+ + + D Sbjct: 115 GWSSASR-GADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233 Query: 244 NIV 246 ++ Sbjct: 234 GML 236 >gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501] gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501] Length = 210 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + R++ + + M + D + Sbjct: 94 IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNDPVLHE 147 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA + Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205 Query: 243 NNIV 246 + +V Sbjct: 206 HGLV 209 >gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 213 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L ++ + + Y ++ + +L+ +I R+ + L Sbjct: 76 CRVLVFTMYEHDEYLMDALQSGADGYLLKDSSSEQVVAAIRMLYQGDSVI-HPRMTK-KL 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + +Q M + ELT RE E L + +G ++ EIA L IS TV +I I Sbjct: 134 ITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K K+RS A+ YAVRN +V Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210 >gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus LMG 18311] Length = 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136 P +V + + E D L+ E + + E I P Y T Sbjct: 51 PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + ++ I + N K +D H +LT RE + L Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPNLHDDLTARERDILAL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209 >gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 233 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 20/234 (8%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 +L + ++ A VG +++L W L + + +++P Sbjct: 2 EQILFDLESTRSEHDAYEKIAAAVREVGFEYSAYYLHTPWPL---SRPKIYMLTNFPEAW 58 Query: 87 VRCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRY-CSLTFDVAR 139 + + V++ + + P VF P RY SL Sbjct: 59 QQRYHAARYVDVDPVIRHARQSYAPIIWSDAVFEETPHLWQEAQAHGLRYGYSLAAVSNC 118 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVE 192 G+M + + R L + L A + ELT REVE Sbjct: 119 GVAGMMSMARSHGPLTRRELQQQELKMRWLVNAAHLAITRAVLPKLSPDNAIELTAREVE 178 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W+++GKT+ EI++I+ IS TVN ++ + + K T + A+A A ++ Sbjct: 179 VLKWVADGKTASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAAMLGLL 232 >gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 243 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 P I + SL + I + L + I E + AA + Sbjct: 116 GDPAAIRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSHGEARMPAAETDGVGS 175 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + G+ F+ T +E E + W+ EGKT+ EI IL +S TV ++ ++ K R+ Sbjct: 176 AD----GEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRA 231 Query: 235 GAIAYAVRNNIV 246 A+A R ++ Sbjct: 232 QAVAKVSRLGLI 243 >gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136 P +V + + E D L+ E + + E I P Y T Sbjct: 51 PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + ++ I + N K +D H +LT RE + L Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209 >gi|313890015|ref|ZP_07823651.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121606|gb|EFR44709.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 213 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +LQ+ +E V + +N ++ + Sbjct: 55 MDLVMP-ELDGVEATLEILQKWSEAKILVLTSYLDNEKIYPVIEAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K+++ H ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILYLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208 >gi|288904712|ref|YP_003429933.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830715|ref|ZP_07463880.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977633|ref|YP_004287349.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731437|emb|CBI12989.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427223|gb|EFM30330.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177561|emb|CBZ47605.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 20/208 (9%) Query: 42 TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101 + + + E VG + L +L E K D +V DLV +S + + Sbjct: 19 GLKSFLNLQPDVEVVGEAGNGLDGINLALELKPDVVV-----MDLVMP-EMSGVEATLKL 72 Query: 102 LQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 L+ E V + +N Y T A I + + I + Sbjct: 73 LEEWKEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE- 131 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 K++D+ +LT RE + L +++G + IA L IS TV Sbjct: 132 ----------VDKKIKAHDMQPELHEDLTARERDILRLLAKGYDNQTIADELFISLKTVK 181 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++I+ K R+ A+ YA ++++V Sbjct: 182 THVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] Length = 304 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%) Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 L E + P R +F + + L P GR+ + L+ + A +A ++ Sbjct: 181 LGEWLDGPHSSGERR--KSFMLGLSENLAVQLHPLGRVGPDENLFRV--TAEDEAGQVQA 236 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 FELT RE E L WI++GK++ +I ILG+S TVN ++ I K + R+ Sbjct: 237 ----LQGSFELTQREAEVLIWIAKGKSNKDIGEILGLSPRTVNKHLEQIFVKLGVENRAS 292 Query: 236 AIAYAVR 242 A A Sbjct: 293 AAVRAAE 299 >gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] Length = 269 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 21/241 (8%) Query: 25 HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDW 82 + S+ + + + L+ G + + + + I+ + + Sbjct: 29 RSMSLSEDFSSRAKSTPELDLETTLNDLSTLYGLKNITYFSASIPYAND--DEHILITTY 86 Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127 V + VL + PV F E G+ Sbjct: 87 STTWVEHYFSLKYQDVDPVLHAGSRSLLPVDWGHLSTTGETSRNFFGEAKEYGIGETGLT 146 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFE 185 + + A I + L + R+ + + A + H + Sbjct: 147 IPVRGMLGEEAMISLNSDLRARDWELFCREMISDFTYFAHLLHDSVTRSRIHQHETDHPQ 206 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L W + GKT+ E +ILG++ TV+ Y+ + K T++ A+A+AV+ + Sbjct: 207 LTKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVATKTQAVAFAVKERL 266 Query: 246 V 246 + Sbjct: 267 I 267 >gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24] gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans TK24] gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALKAGASGFLLKDAPANELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ + LT REVE L ++ G ++ Sbjct: 118 IRVVANGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTDREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei F0415] gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei F0415] Length = 213 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 9/166 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 P +V + + E D L E L + +DN + + Sbjct: 50 PDVVVMDLVMPEMDGVEATLAILKEWKAAKILVLT------SYLDNEKIYPVIEAG-AKG 102 Query: 143 GLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 ++ I+ R G +A K +D H +LT RE + L +++G Sbjct: 103 YMLKTSSAAEILNSIRKVAQGQVAIETEVDQKIKYHDQHPDLHDDLTARERDVLALLAKG 162 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K + R+ A+ YA ++N+V Sbjct: 163 YDNQTIADELFISLKTVKTHVSNILAKLNVEDRTQAVVYAFQHNLV 208 >gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 210 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P ++ + + E D + Q P V L + PA Y T Sbjct: 48 PDIILMDLVMPEMDGIEATKQIIAQWPEAKIIVVTSFLDDEKVYPALEAGATSYMLKTSK 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 I + F ++ + ++ A M + ++ + ELT RE+E L Sbjct: 108 ANEIANAIRATFYGQSVLEPEVTNKV------MAKMKQKKELLPHE--ELTNREMEVLLL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++GKT+ EIA L I+ TV ++++I+ K + R+ A+ YA ++++V Sbjct: 160 MAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAFKHSLV 209 >gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 233 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A+ N F+ ELT RE+E L +++GK++ +IA L I TV ++ Sbjct: 149 SQVASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVT 208 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +++ K + R+ A YA +N + Sbjct: 209 NLLAKLGVEDRTQAAIYAYKNGL 231 >gi|306832892|ref|ZP_07466025.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424967|gb|EFM28100.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 20/208 (9%) Query: 42 TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101 + + + E VG + L +L E K D +V DLV +S + + Sbjct: 19 GLKSFLNLQPDVEVVGEAGNGLDGINLALELKPDVVV-----MDLVMP-EMSGVEATLKL 72 Query: 102 LQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 L+ E V + +N Y T A I + + I + Sbjct: 73 LEEWKEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE- 131 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 K++D+ +LT RE + L +++G + IA L IS TV Sbjct: 132 ----------VDKKIKAHDMQPELHDDLTARERDILRLLAKGYDNQTIADELFISLKTVK 181 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++I+ K R+ A+ YA ++++V Sbjct: 182 THVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale DSM 17629] gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale M104/1] Length = 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 8/154 (5%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGR 152 E K + ++ H E + + N Y + A ++ + + Sbjct: 65 EVLKALKDRKSKVKVLVLTVHNETEYLMKAVDIGINGYVLKDSESAELKKAIFTIADGET 124 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 I + L+ A + M + + D LT RE+E L ++ GK + +IA + I Sbjct: 125 YI------QPSLIPALNSKMIQKNEDELKID-ALTKREMEVLKEMAVGKFNRDIAKEMKI 177 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV N+I+SI +K R+ A +A+RNNI+ Sbjct: 178 SERTVKNHISSIFKKLEVTDRTQAAVFAIRNNII 211 >gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ + LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGDEPVPDTLHTLTEREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|254410670|ref|ZP_05024449.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182876|gb|EDX77861.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 216 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 32/221 (14%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTEL 108 +++Y+ S + +V + QE S++ P +V + + + + Y V +RP Sbjct: 1 MSDYLEMSGYSVVTAEDGQEAL--SLIDKYHPHLIVTDINMPKLNGYELVQQVRKRPAFR 58 Query: 109 FCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 PV + E I + Y F++ + + L + +++ E+ Sbjct: 59 LLPVVFLTERSSTEERIKGYQLGCDLYLPKPFEMKELSAVIRNLLERSQMMQA----ELR 114 Query: 164 LLAAYQANMFKSYDVHWGKD------------------FELTGREVECLTWISEGKTSDE 205 + S + LT RE + L ++ G ++ E Sbjct: 115 FSSTDTGPSTPSPETTEATPKSESTPRAIASPTSPSNVLHLTQREQQVLDLLTTGLSNSE 174 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L +S T+ Y++S++RKT T R+ + +A+ N++V Sbjct: 175 IGNKLHLSPRTIEKYVSSLLRKTETSNRAEIVRFALENHLV 215 >gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 212 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + ++Q+ E + + ++ ++ S T + I Sbjct: 53 MDLVMD-EMDGIEATKEIMQKWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPP--AGMDN 128 ++ +++P + + + P+ F +P G+ Sbjct: 54 VLLNNYPQAWRARYLEAGYLHVDPSVAQACRSQAPIVWSDRLFQDVPALWDEAKAHGLRV 113 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWG 181 + + D + G++ L + L E + +A + DV Sbjct: 114 GWAQSSLD-SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGY 172 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K ++ A+ A Sbjct: 173 SDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAA 232 Query: 242 RNNIV 246 + Sbjct: 233 MLGYL 237 >gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDF 184 +L + ++ + + I L EI L LA + + + Sbjct: 121 TLPIHTPDSALSVLSVARECTAISAVELEEIRLRLRCIIELATMRLGEL-GHPSSQAEQL 179 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE E L W ++GK+S EIA+ILGIS NTVN ++ I +K ++ A AYA Sbjct: 180 ELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLG 239 Query: 245 IV 246 ++ Sbjct: 240 LI 241 >gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] Length = 212 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + ++Q+ E + + ++ ++ S T + I Sbjct: 53 MDLVMD-EMDGIEATKEIMQKWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens TA208] gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens LL3] Length = 210 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EGKT+ EI L I+ TV +I +I+ K R+ A YA RN++ Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 211 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 14/174 (8%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCS 132 S P ++ + + E D + + + F + Y Sbjct: 44 LSYKPDIILMDLVMPEMDGIEATKEILHQWPEAKIIILTSFIDDEKVFPAINAGAKSYIL 103 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 T ++I + + + ++ N + H+ D +LT RE+E Sbjct: 104 KTSSASQIAKAIRDTYQGDGVFEPQVTDKL-------VNRIQMKQQHFPHD-DLTQRELE 155 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I++GK++ EIA L I+ TV ++++I+ K + R+ A YA ++ ++ Sbjct: 156 VLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHQLI 209 >gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 221 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A+ N F+ V ELT RE++ L +++GK++ +IA L I TV ++ Sbjct: 137 SQVASKMMNRFRQPKVEAPAHEELTEREMDVLRLLAQGKSNQDIADELIIGIKTVKFHVT 196 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +I+ K + R+ A YA +N + Sbjct: 197 NILAKLGVEDRTQAAIYAYKNGL 219 >gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42] gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42] Length = 210 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EGKT+ EI L I+ TV +I +I+ K R+ A YA RN++ Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|329117459|ref|ZP_08246176.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] gi|326907864|gb|EGE54778.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] Length = 213 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 18/207 (8%) Query: 42 TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101 + + M E +G + DL E + D +V DLV + + ++ Sbjct: 18 GLKSFLNMQKDIEVIGEASNGRQGIDLALELRPDVLV-----MDLVMP-EMGGVEATLDI 71 Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 L + TE V + +N +D + ++ I+ + Sbjct: 72 LSKWTEAKVLVLTSYLDNEKIYPVIDAGA----------KGYMLKTSSAAEILNAIKKVA 121 Query: 162 IGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 G LA K +D + ELT RE + L +++G + IA L IS TV Sbjct: 122 KGQLAIETEVDKKIKEHDKNPELHEELTAREFDILYLLAKGYDNQTIADELFISLKTVKT 181 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++I+ K R+ A+ YA +++IV Sbjct: 182 HVSNILSKLDVDDRTQAVVYAFQHHIV 208 >gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 248 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 30/256 (11%) Query: 7 QVNIVL-NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65 ++ IV+ N +++ F + SD+ + + + G L + Sbjct: 6 EIEIVMKNWQEDLLDIFSDAQASTSDVFEHIEAAALALGFEHVA------YGFKAPLPLS 59 Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPEN 119 ++ +++P + + + P+ F +P Sbjct: 60 EPKV-------VLLNNYPQAWRARYLEAGYLHVDPSVAQACRSQAPIVWSDRLFQDVPAL 112 Query: 120 ITPP--AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQA 170 G+ + + D + G++ L + L E + +A Sbjct: 113 WDEAKAHGLRVGWAQSSLD-SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVAL 171 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + DV D LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K Sbjct: 172 SRLLRADVAGYSDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHA 231 Query: 231 KTRSGAIAYAVRNNIV 246 ++ A+ A + Sbjct: 232 VNKTAAVVRAAMLGYL 247 >gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] Length = 267 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 149 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 206 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 207 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 234 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 6/134 (4%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSY 176 + ++ SL + + G ++L P I+ D RLW G ++ ++ Sbjct: 101 GVRGFVAKEDGASSLAGAIRQAVAGNLVLSPTSSAIISDQARLWANGSAQPSESTSKQTQ 160 Query: 177 DVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE E LT + + KT+ +IA L +S TV ++++I+ K + Sbjct: 161 TQQSASPLPHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATVKTHVSAIIAKLGVQD 220 Query: 233 RSGAIAYAVRNNIV 246 R GA+ YA+++N+V Sbjct: 221 RVGAVVYALQHNLV 234 >gi|195978655|ref|YP_002123899.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975360|gb|ACG62886.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 197 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +L + E V + +N +D + Sbjct: 39 MDLVMP-ELGGVEATLEILSKWKEARVLVLTSYLDNEKIYPVIDAGA----------KGY 87 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D ELT RE + L +++G Sbjct: 88 MLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTAREYDILHLLAKGY 147 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 148 DNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 192 >gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 75/235 (31%), Gaps = 20/235 (8%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDL 86 R L + A +G H F L R L K ++ S++P Sbjct: 5 REKYLNGFATAKSEADVFLEFSADVRALGFDHCSFGL-RIPL-PISKPQFMLQSNYPQTW 62 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVA 138 V ++ P+ G+ + +C + Sbjct: 63 VERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQFWEEADQHGLRHGWC-MPSVSR 121 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191 IGL+ + G I L E G A Y +M + ELT RE Sbjct: 122 TGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVRER 181 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + GKT EI I+ + TV ++ + MRK ++ A A ++ Sbjct: 182 EALQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236 >gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 214 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136 P +V + + E D L+ E + + E I P Y T Sbjct: 51 PDVVVMDLVMPELDGVQATLELLKEWPEARILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + ++ I + N K +D H +LT RE + L Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209 >gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] Length = 212 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + ++Q E + + ++ ++ S T + I Sbjct: 53 MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFKHDLV 209 >gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPGKDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAAELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ + LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDALHTLTDREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAG 125 +K + + P ++ + + E D + + P V F + Sbjct: 37 RKGSELALALKPDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEA 96 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 Y T + I + + ++ E + + M + + +D Sbjct: 97 GATSYLLKTSRASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHED-- 148 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 149 LTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 >gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] Length = 218 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + + S DV ++ + ++ + I + L + D + LT Sbjct: 100 DGFISKDCDVEILKRAVYSVYEGKKYIQPE-------LEKFLNINVTQEDDPEERIKNLT 152 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 RE+E L IS+G + +I+ L I+ TV N+++SI RK R+ A +AV+N Sbjct: 153 KREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQAAVFAVKN 208 >gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 248 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 32/243 (13%) Query: 22 FVSHLPTRSDLLARMIPL---------------DCTVSWTMRMYALTEYVG--ASHFLLV 64 + +RSDL +++ + ++ E G A+ Sbjct: 19 RSPVVTSRSDLFPKLVAMQKLVGARNFVVTKAAASGFPNKKKLTCELENWGMNAAEQSAQ 78 Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 + LD I +S P + ++ P + + + P A Sbjct: 79 FIRAVGDILLDHIETSLLPVIWRNK----NAGGFADLPDVPA-----LMRRIENDTLPYA 129 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKD 183 G +L + I G ++ ++ + + E + +M + Sbjct: 130 G-----LALPVRLGTIGNGYIVFCGSNLVLDNEVVIEQHIKCCEIMVDMLALDERKVAPS 184 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+ CL +G+ S+EIAV LG+S +TVN Y+ S K + R AIA A+R Sbjct: 185 EALSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRL 244 Query: 244 NIV 246 + Sbjct: 245 GYI 247 >gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 21/234 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPFDLVRC 89 D + + L S M G +F L E +++++ P + Sbjct: 10 DFVETVRQLPDVASILDAMSRTLGQHGFDYFCSSYVAPLSTESPREAVLAERLPAGFLDM 69 Query: 90 MALSEKDKYYNVLQRPTELFCPV--FHTLPENITPP-------------AGMDNRYCSLT 134 + ++ + L+ P F P + +D + Sbjct: 70 YSEAQYVWHDPALRYCRTTLQPFRWFREAPYDPEREPRAVELVRRARDFGMVDGVVIPVI 129 Query: 135 FDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQ-ANMFKSYDVHWGKDFELTGREVE 192 R + F I L +R L + L+A Y + K + L+ RE E Sbjct: 130 SPAGRTGQ---VWFGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLRERE 186 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LT + G++SDEIA L I+ TV +I S +K TR+ A+ A+R+ I+ Sbjct: 187 VLTLAAVGRSSDEIADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRII 240 >gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] Length = 238 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 24/237 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLL+ + + + + +G + + + E K +I+ +++P Sbjct: 6 EDLLSAFLVVKNEYQLFEIVKSTASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141 + + K +Q P+ T E +R Sbjct: 64 KRYVERQYVKIDPTVQHCMASLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189 IG + R D+L E A Y + + DV + K + LT R Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKTS EIA ILG++ TVN ++++ M+K + A AV ++ Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14] gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14] Length = 267 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 149 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 206 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 207 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 208 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 168 YQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 Y ++ ELT RE+E L +S+G ++ EIA L +S TV N++ +I Sbjct: 124 YIHPSLMQEIEDSNEELLRKELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHVYNI 183 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 RK K R+ A Y ++N + Sbjct: 184 FRKLGVKDRTQAAIYMLKNQTI 205 >gi|225871059|ref|YP_002747006.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225700463|emb|CAW94880.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 213 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +L + E V + +N +D + Sbjct: 55 MDLVMP-ELGGVEATLEILSKWKEARVLVLTSYLDNEKIYPVIDAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPNLHEELTAREYDILHLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 208 >gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] Length = 307 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 80/246 (32%), Gaps = 30/246 (12%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS------- 80 + R+ M + + +G +F + + Q L++ + Sbjct: 44 PLDRFIMRLNAAVSAAEMKAVMESSIKSLGYKYF---SYHILQTPVLNATNETRHTFGIN 100 Query: 81 DWPFDLVRCMALSE----------KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++P + V A + + + A Sbjct: 101 NYPEEWVERYASERYVYCDPIVGISLSRKTPFRWSDAIDSDKLTEEERCVIEDAAKRGIV 160 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL----------AAYQANMFKSYDVHW 180 LT + L ++ +D L E L+ A + Sbjct: 161 NGLTVPLMSRHGELAIMTVIPDEKFQDSLPEAHLIHIISQFFHSCALPVVMEEHLIGSYR 220 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + L+ RE E + W+S+GK+S EIA ILGIS +V Y+ S+ RK R+ A+ A Sbjct: 221 RRRSFLSAREKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKA 280 Query: 241 VRNNIV 246 + ++ Sbjct: 281 IMLGLI 286 >gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467] Length = 206 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + + R++ + ++ + K + + Sbjct: 90 IEAGAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHE 143 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA + Sbjct: 144 D--LTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQ 201 Query: 243 NNI 245 + + Sbjct: 202 HGL 204 >gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] Length = 252 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 17/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 14 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 74 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W EGK+S +I+ ILG S TV ++ + K T R +I+ A+ + Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 245 >gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri] gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri] gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt] gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105] gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106] Length = 250 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 17/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 12 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 71 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 72 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 131 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 132 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 191 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W EGK+S +I+ ILG S TV ++ + K T R +I+ A+ + Sbjct: 192 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134 IV D ++ + + ++ P ++ L + + + + Sbjct: 52 DIVVMDVRMPVLDGIEATR-QLAGAGVEDPVKVLVVTTFNLDKYVYEALRAGASGFLLKD 110 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 A++ G+ + ++ D + L+ Y A + + D D LT RE+E L Sbjct: 111 APPAQLLHGIRTVASGAALLDPDVTRQ--LVGRYAARIRPAEDTP--DDTALTPRELEVL 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+ G ++ EIA L IS TV Y++ I+ K + R A+ YA R + Sbjct: 167 RHIANGLSNSEIAATLVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRGL 217 >gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 251 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 32/243 (13%) Query: 22 FVSHLPTRSDLLARMIPL---------------DCTVSWTMRMYALTEYVG--ASHFLLV 64 + +RSDL +++ + +M E G A+ Sbjct: 22 RSPVVTSRSDLFPKLVAMQKLVGARNFVVTKAAASGFPNKKKMTCELENWGMNAAEQSAQ 81 Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 + LD I +S P + ++ P + + + P A Sbjct: 82 FIRAVGDILLDHIETSLLPVIWRNK----NAGGFADLPDVPA-----LLRRIENDTLPYA 132 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKD 183 G +L + I G ++ I+ + + E + +M + Sbjct: 133 G-----LALPVRLGTIGNGYIVFCGTNLILDNEVVIEQHIKCCEIMVDMLALDERKVAPS 187 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+ CL +G+ S+EIAV LG+S +TVN Y+ S K + R AIA A+R Sbjct: 188 EALSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRL 247 Query: 244 NIV 246 + Sbjct: 248 GYI 250 >gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] Length = 238 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 24/237 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLL+ + + + + +G + + + E K +I+ +++P Sbjct: 6 EDLLSAFLVVKNEYQLFDIVKSTASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141 + + K +Q P+ T E +R Sbjct: 64 KRYVEGQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189 IG + R D+L E A Y + + DV + K + LT R Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKTS EIA ILG++ TVN ++++ M+K + A AV ++ Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 262 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 16/171 (9%) Query: 83 PFDLVRCMALSEKDKY----YNVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFD 136 P D V MA + Y L R + L ++ P N L Sbjct: 99 PVDPVHRMAFARATPYRWADIRGLNRIEQRVLGEARDAGLTSGVSIPLRETNGDILL--- 155 Query: 137 VARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + L P+ + + RL IG L + + EL+ R+ ECL Sbjct: 156 -----VNLASPSPEIKTEVHMRLASSIGALFHQELHRLMKPH-RPEPALELSPRQQECLA 209 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W++ GK+S IA I+GIS +TV+ +IA M+ +R+ A +AV ++ Sbjct: 210 WVARGKSSWAIASIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 260 >gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] Length = 194 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 14/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128 ++ S++P + + ++ PV + N + A G+ + Sbjct: 13 LMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAH 72 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183 + S + A IG++ L + I + + + AN+ + + D Sbjct: 73 GWSSASR-GADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 131 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K + + A+A A Sbjct: 132 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 191 Query: 244 NIV 246 ++ Sbjct: 192 GML 194 >gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis V583] gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1] gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2] gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3] gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5] gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96] gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704] gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1] gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6] gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG] gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis V583] gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1] gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2] gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3] gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5] gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96] gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704] gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1] gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6] gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG] gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62] gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF] Length = 210 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + + R++ + ++ + K + + Sbjct: 94 IEAGAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHE 147 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA + Sbjct: 148 D--LTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQ 205 Query: 243 NNI 245 + + Sbjct: 206 HGL 208 >gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] Length = 238 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 16/186 (8%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRYCSLTF 135 I+ +++P + + +Q P V+ + N S Sbjct: 53 IMLNNYPEAWQKRYVKQQYVVVDPTVQHCMLSLQPLVWSSQSANTQSQKDFWEEARSYGL 112 Query: 136 DVARIRIGLMLLFPKGRIILR---DRLWEIGLLAAYQANMFKSYDVHWGK---------- 182 +V + + +G + L D+L E A Y + S VH Sbjct: 113 NVGWAQSSRDFIGTRGMLTLARSTDQLSEKEQKAQYTNMYWLSQTVHSSIAKIVNDAEFA 172 Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LT RE E L W +EGKTS EIA ILG++ TVN ++ + M+K + A A Sbjct: 173 QFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRA 232 Query: 241 VRNNIV 246 V I+ Sbjct: 233 VMLGIL 238 >gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 226 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L T D +L V + G L PK I + + E L+A + Sbjct: 91 VMRALQMGATGYLLKDMDADTLIEAVKIVAEGGSYLHPK---ITHNLIREYRRLSAGKNE 147 Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 L T RE E L +++GK++ I L IS TV N++++I++K Sbjct: 148 KEGEGKREARWPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNV 207 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 208 NDRTQAVIVAIKNG 221 >gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 236 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 16/232 (6%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R+ L ++ + S + T +G + E + + I +++P + Sbjct: 5 RNTRLPKLEGENEITSVFEMVINQTYELGFQYCSFKMSSQVSENQTNPIEFTNYPKEWTT 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMD-NRYCSLTFDVARIR 141 + V++ PV F P + ++ N + + Sbjct: 65 VYNQARYFDVDPVVKHCKRCVLPVVWEGTLFKDAPSLWSLAQTLNVNVAWTQAVHDFQGV 124 Query: 142 IGLMLLFPKGRIILRDRLWEIG--------LLAAYQANMFKSYDVHWGKDFELTGREVEC 193 ++ L + L+E + A A + +LT RE E Sbjct: 125 FSMLTLSRGTDDVSPVELYEKAGHVLWLCHAMHAVVAQKYAGKPSAL-PPSKLTPRETEI 183 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L W + GKT+ +IA IL +S TV +I+S +K + A+ A + + Sbjct: 184 LKWSAMGKTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAGL 235 >gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y A++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYSAHLPTGEEQVPDTLSTLTD 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|192360065|ref|YP_001981449.1| two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190686230|gb|ACE83908.1| two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 312 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL +Q + + F +TGRE + L WI+ GKT+ EI IL +S TVN ++ Sbjct: 229 LLRLHQRAQPEDETQSLRQQFAVTGREADVLRWIANGKTNREIGQILDMSPRTVNKHLEQ 288 Query: 224 IMRKTATKTRSGAIAYAVR 242 I +K + R+ A A A++ Sbjct: 289 IFKKLGVENRTSAAAAAIK 307 >gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1] gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1] Length = 213 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 13/170 (7%) Query: 82 WPFDLVRCMALSEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 P ++ + + E D N + F I Y Sbjct: 48 QPHLILMDLVMPEMDGIQATKLIKNQHPNIEIMMLTSFSDQDHVIPAIEAGAAGYQLKDI 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + L + + + + +LT RE + L Sbjct: 108 EPDELVDSIRKLVRGENSLHPKA-------TNHLLKRVSRKNQPPHQIHQLTNRERDVLK 160 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +++GK++ EIA L I+ TV +I++I K R+ A YAV++ + Sbjct: 161 ELAKGKSNKEIAASLYITEKTVKTHISNIFAKLEVSDRTQAALYAVKHGL 210 >gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTD 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] Length = 199 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 37 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSK 96 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + D LT RE E L Sbjct: 97 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 148 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197 >gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 216 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A+ N F+ ELT RE+E L +++GK++ +IA L I TV ++ Sbjct: 132 SQVASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVT 191 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +++ K + R+ A YA +N + Sbjct: 192 NLLAKLGVEDRTQAAIYAYKNGL 214 >gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus subtilis subsp. spizizenii str. W23] Length = 215 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 12/176 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129 ++ P ++ +++ E D +++ + F + ++ E++ P + Sbjct: 40 RVIEETKPDLVLMDLSMPEMDG-IQAIKKAVQQFSGINIIVLTSYSDQEHVIPALQAGAK 98 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 L + + G+ L + + +M +D K ++LT R Sbjct: 99 AYQLKDTEPEELVKTLRQVHDGQYKLSSAI-----MPHVLTHMRNQHDPEKEKIYQLTRR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + L I+ GK++ EIA L IS TV ++++++ K R+ A +AV+ N+ Sbjct: 154 EKDVLNEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAGGEAMLAPSITRR-LLDKYAEHLPSGDEQVPDTLHTLTD 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C] gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 8/153 (5%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152 E + L+ P + T + P Y D + + + Sbjct: 72 EALRRLRDLENPARVLIVTSFTEQRTVVPALRAGAAGYLYKDIDPDALAGAIRSVHAGHV 131 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 ++ + LLAA G+ LT RE E L I++G+++ EIA L + Sbjct: 132 LLQPE--VAEALLAAQDDQSGPG-----GRPGSLTDREREVLGLIADGRSNREIARTLVL 184 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S TV ++++I+ K R+ A +AVR+ I Sbjct: 185 SEKTVKTHVSNILMKLDLSDRTQAALWAVRHGI 217 >gi|325289912|ref|YP_004266093.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324965313|gb|ADY56092.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 212 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D +L + ++ G +L P L ++ Sbjct: 90 VFQVLQTGVAGYLLKDVFPKTLVNSIRKVYSGEPILAPSVTGKLLGQI------------ 137 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S F L+ RE+E L ++ G ++ EI + L IS TV N++++I RK + Sbjct: 138 ---STPSKNKNSFGLSKREMEILRAVARGSSNKEIGISLYISEKTVKNHLSNIFRKLEVE 194 Query: 232 TRSGAIAYAVRNNIV 246 R+ A AV+ N+V Sbjct: 195 DRTQAAIKAVKLNLV 209 >gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 14/169 (8%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 I+ D + + ++ K N + +F +++ + Y Sbjct: 49 DIILMDINMPNINGIKAAKMLKNDNPKNKI--MFLTIYNDKEYLMEALKIGVEGYILKDA 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + G I + EI L + ELT RE++ L+ Sbjct: 107 DSDELIKAIRTISNGGVYIHPSLVSEIENLDTDECKK------------ELTDREMQILS 154 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+EG ++ EIA L +S TV N++ +I RK K R+ A Y ++NN Sbjct: 155 LIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203 >gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 321 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 16/171 (9%) Query: 83 PFDLVRCMALSEKDKY----YNVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFD 136 P D V MA + Y L R + L ++ P N L Sbjct: 158 PVDPVHRMAFARATPYRWADIRGLNRIEQRVLGEARDAGLTSGVSIPLREANGDILL--- 214 Query: 137 VARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + L P+ + + RL IG L + + EL+ R+ ECL Sbjct: 215 -----VNLASPSPEIKTEVHMRLASLIGALFHQELHRLMKPH-RPEPALELSPRQQECLA 268 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W++ GK+S IA I+GIS +TV+ +IA M+ +R+ A +AV ++ Sbjct: 269 WVARGKSSWAIAAIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 319 >gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C] gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C] Length = 270 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 152 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 209 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 210 RELEVLKLVATGMNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 267 >gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 269 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 151 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 208 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 209 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 266 >gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTD 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] Length = 206 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 Y T I + + R++ + ++ + K + +D L Sbjct: 94 AAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHED--L 145 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA ++ + Sbjct: 146 TNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204 >gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 214 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136 P +V + + E D L+ E + + E I P Y T Sbjct: 51 PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 I + ++ I + N K +D H +LT RE + L Sbjct: 111 ATEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209 >gi|225868023|ref|YP_002743971.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701299|emb|CAW98303.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 213 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV L + +L + E V + +N +D + Sbjct: 55 MDLVMP-ELGGVEATLEILSKWKEARVLVLTSYLDNEKIYPVIDAGA----------KGY 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ I+ R G LA K++D ELT RE + L +++G Sbjct: 104 MLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTAREYDILHLLAKGY 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 208 >gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] Length = 210 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 Y T I + + R++ + ++ + K + +D L Sbjct: 98 AAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHED--L 149 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L I++GK++ EIA L I+ TV ++++I+ K R+ A YA ++ + Sbjct: 150 TNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208 >gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 298 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 42/82 (51%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 ++ L + + ++ LT RE + L W+S GKT+ EIA IL +S TVN + Sbjct: 214 QLHALIRLVTPKKRGTEEDLQRELNLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNKH 273 Query: 221 IASIMRKTATKTRSGAIAYAVR 242 + I +K R+ A + ++R Sbjct: 274 LEQIYKKLNVDNRTAAASISLR 295 >gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ + LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLDTLTDREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 205 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Sbjct: 135 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 194 Query: 239 YAVRNNIV 246 Y ++N + Sbjct: 195 YMLKNETI 202 >gi|294499258|ref|YP_003562958.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349195|gb|ADE69524.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 212 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 49/100 (49%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ +++ + + + KS + LT RE + L I++GK++ E Sbjct: 112 LVAAIRKLMNGENQLHPKVTTHLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKE 171 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I V L I+ TV ++++I+ K + R+ A YAV++ I Sbjct: 172 IGVALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211 >gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074] gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074] Length = 267 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 149 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 206 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 207 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] Length = 196 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 14/180 (7%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAG 125 +K + P ++ + + E D + + P V F + Sbjct: 23 RKGSELALELRPDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEA 82 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 Y T + I + + ++ E + + M + + +D Sbjct: 83 GATSYLLKTSRASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLYED-- 134 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 135 LTEREFEILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 194 >gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 221 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 11/177 (6%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-R 129 +Q L +V D ++ + E + + T++ + E + P Sbjct: 46 KQLLPDVVIMD---LVMPEIDGVEATRRVKAVSPTTQVIVLTSFSDDEKVFPAIKAGAIS 102 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + ++ + L+ + A D LT R Sbjct: 103 YLLKDVSPLELARAVRSAKRGEAVLHPE--VAAKLMQEFSAPRNNDPDAEA-----LTER 155 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E++ L I+ G ++ EIA L IS TV ++++I+ K R+ A YA+R +V Sbjct: 156 EMDVLRLIARGHSNREIADSLIISEKTVKTHVSNILSKLHLADRTQAAIYALRQRLV 212 >gi|295704610|ref|YP_003597685.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802269|gb|ADF39335.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 212 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 48/100 (48%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ +++ + + + KS + LT RE + L I++GK++ E Sbjct: 112 LVAAIRKLMNGENQLHPKVTTHLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKE 171 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I L I+ TV ++++I+ K + R+ A YAV++ I Sbjct: 172 IGAALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211 >gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] Length = 212 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y + ++ + ++ +I L+ ++ D Sbjct: 90 IKAGAMGYLLKDSSIDQVAQAIRVVADGQSLISPS--MAAKLMEEFK--QMARPDRSPVP 145 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE+E L +++G + EIA L IS NTV N++ +I+ K +R A+ YAVR Sbjct: 146 GPKLTDRELEVLGLVAKGLNNREIAKRLFISENTVKNHVRNILEKLQAHSRMEAVMYAVR 205 Query: 243 NNIV 246 ++ Sbjct: 206 QKLL 209 >gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum] Length = 265 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 16/188 (8%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---------HTLPENI 120 Q Q+L+ +++ +P D + + E ++ + R PV + Sbjct: 68 QIQRLERVLNVSYPSDWLDQY-MKENYAQHDPILRIHLGQGPVMWEERFNRAKGAEEKRF 126 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLF------PKGRIILRDRLWEIGLLAAYQANMFK 174 A + +TF A R + + P L L + A Sbjct: 127 IAEATQNGMGSGITFSAASERNNIGSILSIAGREPGRNAALVAMLNCLTPHLHQAAIRVA 186 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + L+ RE + W+S GKT+ EIA IL IS TV ++A+++RK R+ Sbjct: 187 NLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRT 246 Query: 235 GAIAYAVR 242 AI + Sbjct: 247 HAIVLGMH 254 >gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 235 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 18/231 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 D+L R+ ++ +G H + L F + +++ S + R Sbjct: 7 DVLGRLDEASEPSQVLAQVSVAARQLGFEHCAYGLRTLVPF--TRPKTLMFSTYDERWSR 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPA--GMDNRYCSLTFDVARI 140 + + + PV F P+ G+ + F+ Sbjct: 65 RYISAGYLQVDPTVAHGVHSGTPVIWSNEVFRDAPQMWDEARSFGLRVGWAQSVFEPD-A 123 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-----DVHWGKDFELTGREVECLT 195 R+G++ L + + LL N LT R+VE L Sbjct: 124 RVGMLSLARSSEPLTAAEMRAKDLLFQGLVNKAHRAFCRLLGGPLAGIEPLTKRQVEVLR 183 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +GKTSDEIA IL IS+ TV+ ++ + M + T+S A A+A R ++ Sbjct: 184 WTGDGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASRLGLL 234 >gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42] gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42] Length = 214 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 45/94 (47%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R + R + + D K +LT RE + L I++GK++ EIA L Sbjct: 115 REVYSGRYRLSADIVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEIAKGKSNKEIAAALF 174 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS TV ++++++ K R+ A YAV+ N+ Sbjct: 175 ISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNV 208 >gi|311696551|gb|ADP99424.1| two-component response regulator [marine bacterium HP15] Length = 279 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S + FELT RE + L WI+ GKT+ EI IL +S TVN ++ + RK + R Sbjct: 206 NSATAALRQRFELTLRESDVLLWIANGKTNREIGQILDMSPRTVNKHLEQVFRKLGVENR 265 Query: 234 SGAIAYAVR 242 + A A A+R Sbjct: 266 TAAAASAIR 274 >gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 270 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 152 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 209 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 210 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 267 >gi|217978159|ref|YP_002362306.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503535|gb|ACK50944.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 306 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 G+ + L F RI + + RL E A A K Sbjct: 192 GLGPKCAVLQFGSRRIECQFLSRTGPDEFLY--RLKEADSEAGDGAQRLKEA-------M 242 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L W++ GK++ +I+ IL IS TVN ++ I RK + R+ A AV+ Sbjct: 243 TLTSREAEVLVWLAAGKSNRDISAILSISPRTVNKHLEQIFRKLGVENRAAAAVMAVQT 301 >gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] Length = 223 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + + G ++PK L +RL+ + + Sbjct: 91 VLELLKNGALGYLLKDVEPSVLIKAIHMVNEGNPFVYPK----LAERLFGSTAVYGDVSR 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M K + LT RE++ L I++G ++ +I LG+S TV N++ SI K Sbjct: 147 MAKEI-WDESRGERLTPREMDVLGCIAKGFSNQDIGKALGLSEKTVKNHLTSIFHKLKVN 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ Y ++N IV Sbjct: 206 DRTQALVYVLKNKIV 220 >gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] Length = 199 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 37 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 96 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 97 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 148 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197 >gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 217 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 6/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC- 131 +++++ P ++ + + D + + E+ + T ++ G+ Sbjct: 42 RLIANNHPHVVLMDLRMPVLDGVRATGRIRELFPEVRVIILTTFDDDDLVFDGLRAGAIG 101 Query: 132 -SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L + + +G L+ + ++A + + S L+ RE Sbjct: 102 YLLKDVSSDNLFEAVRAAYRGEYFLQPSIT-AKVVAEFARSPRPSSAKMAELTEPLSPRE 160 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E L ++EGK++ EIA L IS TV N+++SI+ K K R A+ A I+ Sbjct: 161 IEVLFLVAEGKSNREIAEQLVISEGTVKNHLSSILSKLGAKDRLQAVIRAREAGIL 216 >gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12] gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium DO] gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12] gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 210 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + R++ + + M + + + Sbjct: 94 IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNEPVLHE 147 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA + Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205 Query: 243 NNIV 246 + +V Sbjct: 206 HGLV 209 >gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 196 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 34 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 93 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 94 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 145 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 146 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 194 >gi|254504710|ref|ZP_05116861.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222440781|gb|EEE47460.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 248 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 6/144 (4%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 + +L R +F + +F + + L+P GR+ + Sbjct: 106 HTLLARTGAADATLFQLGRALGEWLESGADTPKRGSFMLGLSEELAVQLYPLGRVGPDEN 165 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + ++ V +F+LT RE E L WI++GK++ +I IL +S TVN Sbjct: 166 LFRV--TAEDEEGQVRALQV----EFQLTQREAEVLIWIAKGKSNKDIGEILNLSPRTVN 219 Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242 ++ I K + R+ A A Sbjct: 220 KHLEQIFVKLGVENRASAAVRAAE 243 >gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii AYE] gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB900] gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB056] gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB058] gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB059] gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR family) [Acinetobacter baumannii AYE] gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] Length = 238 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 24/237 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLL+ + + + + +G + + + E K +I+ +++P Sbjct: 6 EDLLSAFLVVKNEYQLFEIVKSTASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141 + + K +Q P+ T E +R Sbjct: 64 KRYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189 IG + R D+L E A Y + + DV + K + LT R Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKTS EIA ILG++ TVN ++++ M+K + A AV ++ Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 210 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 78/204 (38%), Gaps = 20/204 (9%) Query: 55 YVGASHFLLVRWDL--FQEQKL----DSIVSSDWPFDLVRCMALSEKDKYYNVLQ----R 104 +G S +L + DL E K + S P ++ + + D + Sbjct: 14 RLGVSTYLSTQSDLEIVGEAKDGLEGKKMALSLQPDIILMDLVMDNMDGIQATQEILADW 73 Query: 105 PTELFCPVFHTLPENITPPA--GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P V + + PA Y T I + + +I + E Sbjct: 74 PKANILIVTSFIDDEKVYPAMQAGAKGYILKTSSANEIASAIRRTYAGESVIAP-TVNEK 132 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + +AN +D +LT RE E L I+ GK++ EIA L I+ TV +++ Sbjct: 133 LIAHEVEANRHHLHD-------DLTTREREVLQLIAAGKSNQEIADELFITLKTVKTHVS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I+ K + R+ A YA +N +V Sbjct: 186 NILSKLGVEDRTQATIYAFQNQLV 209 >gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] Length = 204 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 42 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + +D LT RE E L Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHED--LTERESEILLL 153 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202 >gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 15/190 (7%) Query: 65 RWDLFQEQKLDSIVSSD--WPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119 + E ++I ++ P ++ + + KD + R + + + Sbjct: 29 EIVAYAEDGDEAIAQTERWMPDLILMDIRMPGKDGLETTREIKLRYPYVKIVLITVSDDA 88 Query: 120 ITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 + Y + L + + + LA F Sbjct: 89 AHLFEALKQGAQGYLLKNLEPGTWLEYLRAIASDEAPLSSE-------LALRILQEFPVN 141 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 G+ LT RE E L W+++G T+ EIA +L IS TV N++ +I++K + R Sbjct: 142 RRTSGEQPPLTAREREILGWVAQGMTNREIAGVLHISDQTVKNHLKNILQKLHLENRVQL 201 Query: 237 IAYAVRNNIV 246 YA+ + Sbjct: 202 TRYALEQGWI 211 >gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099] gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099] Length = 248 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 46/86 (53%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 ++ L + + + +L+ RE EC+ WI+ GK+S EI ILGIS NTVN + Sbjct: 161 QLAALHFHVRVTKGTSSNALKQVQDLSLREKECILWIARGKSSWEIGKILGISGNTVNFH 220 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + + MRK T +R+ A A IV Sbjct: 221 LKNAMRKLDTASRTVAAIKATSLGIV 246 >gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15] gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15] Length = 210 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + R++ + + M + + + Sbjct: 94 IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNEPVLHE 147 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L ISEGK++ EIA L I+ TV ++++I+ K + R+ A YA + Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205 Query: 243 NNIV 246 + +V Sbjct: 206 HGLV 209 >gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 204 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDK----YYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 42 PDIILMDLVMDEMDGVEATRSIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 153 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202 >gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 173 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L + IT M N V+ + + + + L ++ L + Sbjct: 46 HGLRKGITQCLMMPNHALGF-LSVSCTSLQAHSISSEEVELRLQMLVQMALTTLLR---- 100 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K + Sbjct: 101 FEHETVMPPEMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNK 160 Query: 234 SGAIAYAVRNNIV 246 YA ++ Sbjct: 161 IQIACYAAATGLI 173 >gi|328885551|emb|CCA58790.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 249 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D + + + G L P + L D+L E A Q + Sbjct: 111 FPALRAGARGYLTKDAGGEEIVRALRDVTDGRAGLSPAVQRRLLDQLVEG---AGRQESP 167 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT RE E L +++G ++ EIA L IS TV +I ++ KT + Sbjct: 168 VAAEGAAASSGDGLTERETEVLVLVADGLSNQEIAGRLRISTATVKTHINNLFAKTGVRD 227 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA ++ +V Sbjct: 228 RAQAVRYAYQHGLV 241 >gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] Length = 196 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 34 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 93 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + D LT RE E L Sbjct: 94 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 145 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 146 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 194 >gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 210 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 48 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 >gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] Length = 208 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197 Query: 239 YAVRNNIV 246 Y ++N + Sbjct: 198 YMLKNETI 205 >gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074] gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074] gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRR-LLDKYAEHLPSGDEPVPDTLHTLTD 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESGLV 218 >gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 233 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + + G ++PK L +RL+ ++ Sbjct: 101 VLEMLKNGALGYLLKDVEPNVLIKAIHMVNEGNPFVYPK----LAERLFGTPAISGDVGR 156 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M K + LT RE++ L I++G ++ +I LG+S TV N++ S+ K Sbjct: 157 MAKEI-WDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVN 215 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ Y ++N IV Sbjct: 216 DRTQALVYVLKNKIV 230 >gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1] gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1] Length = 225 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 3/133 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + +L V + G + PK + + + + LA Q Sbjct: 91 VSHALKTGALGYLLKEMDSEALIEAVKVVAAGGSYIHPK---VTHNLISDYRRLANTQET 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++GK++ I L IS TV N++++I++K Sbjct: 148 GGFKQTEVRRPLHLLTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVN 207 Query: 232 TRSGAIAYAVRNN 244 R+ A+ ++N Sbjct: 208 DRTQAVVTGIKNG 220 >gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 223 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPATELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ + LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLHTLTEREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 99 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 161 EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + LLA + D+ + + RE E L W +EGKTS EIA+IL IS NTVN Sbjct: 12 RLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVN 71 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ +K ++ YA ++ Sbjct: 72 FHQKNMQKKFNAPNKTQIACYAAATGLI 99 >gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 187 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + ++Q E + + ++ ++ S T + I Sbjct: 28 MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 86 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 87 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 136 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 137 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 184 >gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114] gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] Length = 250 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 74/216 (34%), Gaps = 20/216 (9%) Query: 51 ALTEYVGASH---FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 L+E H +L K D + ++P + + +Y V+ Sbjct: 28 CLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDPVVDYSKS 87 Query: 108 LFCP----VFHTLPENITPPAGMDNR-------YCSLTFDVARIRIGLMLLFPKGRIILR 156 P VF P + S A G++ + I Sbjct: 88 HHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFAHSDKDIYT 147 Query: 157 DRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 D L+ +L + N K D LT RE ECL W SEGK++ +I+ IL Sbjct: 148 DSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGKSTWDISKIL 207 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G S TV ++ + K T R +I+ A+ + Sbjct: 208 GCSERTVTFHLTNTQMKLNTTNRCQSISKAILTGAI 243 >gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 258 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 V + L+ RE E L W+ EGK+S +IA++LGI TV ++A++MRK R+ Sbjct: 184 RASVPDREPIALSRREREVLDWLKEGKSSWDIAMVLGIRERTVRFHVANLMRKLGAVNRA 243 Query: 235 GAIAYAVRNNIV 246 +A A+R ++ Sbjct: 244 QTVALALRRGLI 255 >gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 254 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 24/240 (10%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD--SIVSSDWPFDLVR 88 +L+ + +D + + M + + + + ++ +V+ +P +L Sbjct: 15 ELIDVLAEVDTSDKFVACMKGEMQRIVPHEWFICSVGRIGRNGIEPIHVVTHKFPDELFA 74 Query: 89 CMALSEKDKYYN-VLQRPTELFCPVFHTLPEN--------ITPPAGMDNRYCSLTFDVAR 139 ++ S+ N VL R E P+ + D R V Sbjct: 75 LISGSDPKVLDNPVLSRWWETRAPIAINFEDCSGSWPQVMAERAIKFDARNLLGHGQVDI 134 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHW-------GKDFEL 186 + DR + L L A A S++ G+ EL Sbjct: 135 GGAFVTYFSFHRIPQRLDRKQTLLLARIVPNLYAAFARAHPSFESAATVKRLNDGRGAEL 194 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T R++E L W+ +GKT+ EI+VILG+S + V ++ I RK R+ A+A A +++ Sbjct: 195 TPRQIEILEWLRQGKTNWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEAASRSVI 254 >gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 287 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG T+ EI+ +L IS +TV +++ + K R+ A +A +NN+ Sbjct: 227 LTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQAAVWAAKNNL 286 Query: 246 V 246 V Sbjct: 287 V 287 >gi|134299954|ref|YP_001113450.1| two component LuxR family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052654|gb|ABO50625.1| two component transcriptional regulator, LuxR family [Desulfotomaculum reducens MI-1] Length = 218 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 40/75 (53%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S D K LT RE+E L +++G+++ IA L IS TV N++ +I +K Sbjct: 142 RLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANALYISEKTVKNHLTNIFQKIGVA 201 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YA++ +V Sbjct: 202 DRTQAALYAIKEKLV 216 >gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X513] gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 205 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Y ++N Sbjct: 141 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200 Query: 245 IV 246 + Sbjct: 201 TI 202 >gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 208 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197 Query: 239 YAVRNNIV 246 Y ++N + Sbjct: 198 YMLKNETI 205 >gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C] gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C] Length = 223 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 76/222 (34%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L+V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEGDLVVVGEAGDGLQALEQVRALQPDVVLMDIR 57 Query: 92 LSEKDKYYNVLQ-------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D Q P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPDRNGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEQSLPDTLGTLTEREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTE 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDTLHTLTD 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 237 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 16/184 (8%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENI--TPPAGMDNR 129 + S++P + + ++ PV F PE G+ + Sbjct: 54 LLSNYPEAWKQRYMEAGYIDIDPTMKHMRRFQTPVVWTDAFFSRTPELWRDAQAHGLRHG 113 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFK--SYDVHWGK 182 + TFD G++ L + L L++ M + + Sbjct: 114 WSQSTFDSC-GVSGMLTLARSTGPVTPAELERNEFRMRWLVSTTHLAMTRVLMPKLMPDT 172 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A Sbjct: 173 ERGLTDREVEVLKWAADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAAM 232 Query: 243 NNIV 246 ++ Sbjct: 233 LGLL 236 >gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] Length = 215 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPFLQVGVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] Length = 199 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 37 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 96 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 97 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 148 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197 >gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 204 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 42 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 153 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202 >gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 210 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 48 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 >gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36] gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36] Length = 244 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 G D + DV I L++ + + I +A + +F + K Sbjct: 119 YVGSDGLSILVKTDVGSTLISLVI---PESSLDAEHNQLIEYIAPHIHEVFNRQGENIRK 175 Query: 183 DF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E L W EGK++ + ++IL IS TV + ++I +K RS AIA Sbjct: 176 SLWKPNLSKRELEVLNWAKEGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIAR 235 Query: 240 AVRNNIV 246 A+ +V Sbjct: 236 AIHFGLV 242 >gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 214 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 5/162 (3%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DLV + + ++ + L V + ++ ++ S +R Sbjct: 56 MDLVMD-GMDGIETTRQLMNQFPNLKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRA--- 111 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + R R + +A+ N F+ +LT RE+E L +++GK++ Sbjct: 112 -SEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREMEVLRLVAQGKSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +IA L I TV ++ +I+ K + R+ A YA +N + Sbjct: 171 QDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212 >gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +AA N F+ K +LT RE++ L +++GK++ EIA L I TV ++ Sbjct: 141 SQVAAKMMNRFRQPQQTTAKAHEQLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHV 200 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 +I K R+ A YA + + Sbjct: 201 TNIFSKLGVDDRTQAAIYAHKQGL 224 >gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067] gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171] Length = 212 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + ++Q E + + ++ ++ S T + I Sbjct: 53 MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 6/177 (3%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNR 129 E+ +V D ++ + + + + RP ++ L E + + Sbjct: 47 ERLRPDVVVMDVRMPVLDGIEATRRLA-GAGVDRPVKVLVVTTFNLDEYVYEALRAGASG 105 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + A++ G+ + ++ + + L+ Y A + LT R Sbjct: 106 FLLKDAPPAQLLHGIRTVSTGAALLDPEVTRQ--LVGRYAARIRPPDAAAAD--ARLTPR 161 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L I+ G ++ EIA L IS+ TV +++ I+ K + R A+ YA R +V Sbjct: 162 ELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218 >gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 248 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 130 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 187 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 188 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 245 >gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] Length = 215 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13] Length = 210 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 13/176 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPP---AGMDNR 129 + + P ++ + + E D +++R + + + Sbjct: 41 ELAEALKPDVILMDLVMPEMDGIEATKQIVERNIPSKVLILTSFADQDHVIPAIRAGATG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + ++ + + + + ++ + F ELT R Sbjct: 101 YQLKDVEPDQLIESIRAVHRGESQLHPK-------VTSHVMSHFTKGFGSTNLHEELTKR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E+E L I++GK++ EIA L I+ TV ++++I+ K R+ A YAV++ I Sbjct: 154 ELEVLAEIAKGKSNKEIASSLFITEKTVKTHVSNILAKLEVADRTQAALYAVKHGI 209 >gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 215 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 F H LP +G Y + ++ + + + D + +A Sbjct: 85 FSDQAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD------IASAL 134 Query: 169 QANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + F + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ Sbjct: 135 LSQTFPQEEQQESSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSIL 194 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R+ A YAV+N IV Sbjct: 195 GKLNLSDRTQAALYAVKNGIV 215 >gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum CMR15] Length = 238 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPP--AGMDN 128 ++ +++P + + + P+ F +P G+ Sbjct: 54 VLLNNYPQAWRVRYLEAGYLHVDPSVAQACRSQAPIVWSDRLFQDVPALWDEAKAHGLRV 113 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWG 181 + + D + G++ L + L E + +A + DV Sbjct: 114 GWAQSSLD-SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGY 172 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K ++ A+ A Sbjct: 173 VDDSLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAA 232 Query: 242 RNNIV 246 + Sbjct: 233 MLGYL 237 >gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 254 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] Length = 199 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 37 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 96 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + D LT RE E L Sbjct: 97 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 148 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197 >gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] Length = 171 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + ++Q E + + ++ ++ S T + I Sbjct: 12 MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 70 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 71 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 120 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 121 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 168 >gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 223 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + + G ++PK L +RL+ ++ Sbjct: 91 VLELLKNGALGYLLKDVEPNVLIKAIHMVNEGNPFVYPK----LAERLFGTSSISGDVGR 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M K + LT RE++ L I++G ++ +I LG+S TV N++ S+ K Sbjct: 147 MAKEI-WDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVN 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ Y ++N IV Sbjct: 206 DRTQALVYVLKNKIV 220 >gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 204 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 42 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 153 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202 >gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e] gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S] gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161] gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e] gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes L99] gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816] gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220] gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str. Scott A] Length = 212 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + ++Q E + + ++ ++ S T + I Sbjct: 53 MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus N315] gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300] gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224] gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796] gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315] gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300] gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224] gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus aureus 04-02981] gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796] gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp. aureus CGS03] gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] Length = 207 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124 E L+ + + P ++ + + + + E+ V + ++ + Sbjct: 34 ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPEIKVLVLTSYVDDEHVIS 93 Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + Y + ++ + + ++I ++F++ Sbjct: 94 AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202 Query: 242 RNNIV 246 N ++ Sbjct: 203 ENKLI 207 >gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P +++ + + P ++ L E + Sbjct: 42 DQVRALQPDEVLMDIRMPRMAGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTE 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218 >gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002] gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC 7002] Length = 231 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLL 147 + E + Q + H+ P I YC D + + + + Sbjct: 62 GIGGVETCRQIKQQQPQLPILVLTSHSQPTLINRLIEAQAQGYCLKGVDAESLILAIQSI 121 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 +I A +Q M + +D LT RE E L I+ GK++ EIA Sbjct: 122 AAGASWWDAQATQQIR--AQFQQPMAEMPRSVPAQDNPLTQREGEILALIANGKSNSEIA 179 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ +TV ++ +I++K + R+ A+ A+R+ ++ Sbjct: 180 ETLYIAASTVRVHVHAILQKLEARDRTQAVVIALRHGLI 218 >gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 214 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 7/173 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCS 132 + P ++ + + D + + L V + ++ ++ S Sbjct: 44 RLAQEYHPDVVLMDLVMDGMDGIETTRELMKQFPNLKVIVLTSYLDDEKMYPVIEAGAFS 103 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 +R + R R + +A+ N F+ +LT RE+E Sbjct: 104 YLLKTSRA----SEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREME 159 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +++GK++ +IA L I TV ++ +I+ K + R+ A YA +N + Sbjct: 160 VLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212 >gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191 RI + + I L Y A+ + + + T RE Sbjct: 113 HGRIAMWSVARSADPISDLELAATEGRLIYLAHAAHAVNSRLADAPAAAMQMGPFTTREK 172 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GKT+ EIA IL IS T+ ++ +IM K + ++ AI AV I+ Sbjct: 173 EVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 237 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143 VR D + ++ + E Y + + Sbjct: 74 VRMPRRGGIDATSAIKEKVPSAKIVMLTISDEEADLFDAIKAGAMGYLLKEISIDEVAAD 133 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ +I LL+ + A + D LT RE+E L +++G + Sbjct: 134 IRAVYNGQSLISPS--MASKLLSEFAAMIKTKDDRPQLPTPRLTDREMEVLRLVAKGLNN 191 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L IS NTV N+I +I+ K +R A+ YAVR ++ Sbjct: 192 RDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] Length = 215 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191 RI + + I L Y A+ + + + T RE Sbjct: 113 HGRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREK 172 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GKT+ EIA IL IS T+ ++ +IM K + ++ AI AV I+ Sbjct: 173 EVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 206 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 44 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 103 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + D LT RE E L Sbjct: 104 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 156 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 204 >gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 221 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 17/203 (8%) Query: 49 MYALTEYVGASHFL-------LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101 + L++ + + ++ L + Q ++ D I+ ++ + E + Sbjct: 23 LAMLSDALDDAGYMVLVALDGLSALNRVQRRRPDLILLD----AMMPGLDGFETCRRLKA 78 Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDR 158 ++ L + G + Y + + + RI+L R Sbjct: 79 QPASADIPVVFMTGLTDTRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTSRILLSAR 138 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + + + + F+LT REVE L W++ GKT+ +I ILG+S TVN Sbjct: 139 EAQQPSVLTLED---EPAHRLLSARFQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVN 195 Query: 219 NYIASIMRKTATKTRSGAIAYAV 241 ++ + K +TR+ A + A+ Sbjct: 196 KHLEHVYVKLGVETRTAATSVAL 218 >gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 125 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 182 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 183 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 240 >gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 165 LAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +AA N F+ L+ RE++ L ++ G+T+ EIA +L IS TV N+I Sbjct: 137 VAAQVLNAFRQMAAEEDTQSIYSPLSPRELQVLELVAAGRTNKEIAKVLDISNQTVKNHI 196 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +SI+RK A R+ A+ YA+R + Sbjct: 197 SSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W] gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI] gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W] gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 210 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 48 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 >gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 255 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 3/218 (1%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 + + R+I + +++ + + LL R + F +D +S F+L+ Sbjct: 40 DEFVRRVIAQELLSDMRIQLEGQADSIREGRKLLARHE-FDVLMVDLRLSDGMGFELISE 98 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + + ++ E V T + S V + G + P Sbjct: 99 ARSHQSNGEI-IVISALEDDSHVLRAFELGATGYLLKNAWLQSFAEAVLHVVNGGAAITP 157 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAV 208 + L RL A + G+D LT RE E L +++ G S EI Sbjct: 158 RLARRLLHRLNNNHRHAHQGDPAGHAPPPRQPGRDATLTPRESEILRFVACGYVSAEIGE 217 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGI+ TVN +I SI +K +R+ A+ +AV ++ Sbjct: 218 RLGITWQTVNVHIKSIYKKLHVHSRAQAVNFAVHTGLI 255 >gi|320547873|ref|ZP_08042156.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320447413|gb|EFW88173.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 214 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + + L E K D +V DLV +S + +L+ E V Sbjct: 30 IEVVGEAGNGIDGIKLALELKPDVVV-----MDLVMP-EMSGVEATLKLLKEWKEAKILV 83 Query: 113 FHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 + +N Y T A I + + I + Sbjct: 84 LTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIHKVARGDLAIETE-----------V 132 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 K++D +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 133 DKKIKAHDQKPELHEDLTARERDILKLLAKGYDNQTIADELFISLKTVKTHVSNILAKLE 192 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A+ YA ++++V Sbjct: 193 VDDRTQAVVYAFKHHLV 209 >gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] Length = 207 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 45 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 104 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 105 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 156 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 157 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 205 >gi|289811480|ref|ZP_06542109.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 115 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 161 EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + LLA + D+ + + RE E L W +EGKTS EIA+IL IS NTVN Sbjct: 28 RLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVN 87 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ +K ++ YA ++ Sbjct: 88 FHQKNMQKKFNAPNKTQIACYAAATGLI 115 >gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 269 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 151 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 208 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 209 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 266 >gi|329929253|ref|ZP_08283011.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936739|gb|EGG33180.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 220 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 13/181 (7%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-PAGMDNRYC 131 L +V D ++ + + + K + + +++ P Y Sbjct: 46 LLPDVVLMDLNMPVLNGIDTTARLKKELPYIK---VIVLTSFVDYDHVLPAIRAGARGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------ 185 + + G+ +F + D GLL + + + + E Sbjct: 103 LKDIEPEELVAGIRRVFQGQVELHPDA---AGLLMTHVTSPAGEDEANGSSHQEAAQLNK 159 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G + EI+ L I+ TV +++ ++ K R+ A YA+++ I Sbjct: 160 LTRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGI 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942] gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus atrophaeus 1942] Length = 211 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 41/82 (50%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A + + + LT RE+E L ++EGKT+ EI L I+ TV ++ +I Sbjct: 129 VAGKVLSRLRHSNDSALPHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K R+ A YA RN +V Sbjct: 189 LSKLEVADRTQAAVYAHRNKLV 210 >gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 3/184 (1%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 ++R + +D+ ++S P ++ R + ++ P+E +F ++ Sbjct: 44 IIRTNTADVALIDAGLTSSDPLEIARQTRHLAP-RTAIIMLTPSEDEERLFQSIKVGAAA 102 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + L V ++ G L+ ++ + +L L + ++ + K Sbjct: 103 YYTRNITSEELVDAVRKVSQGEYLIN--DDVLSKPQLASRVLRSFHELTVEKEEGTPKDS 160 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ REVE L +I+ G ++ EIA L IS TV N+I SI++K + R+ A+ +A+R Sbjct: 161 YSPLSSREVEILDYIARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVHALR 220 Query: 243 NNIV 246 + + Sbjct: 221 HGWI 224 >gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 238 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 24/237 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLL+ + + + + +G + + + E K +I+ +++P Sbjct: 6 EDLLSEFLIVKNEYQLFEIVKSTASKLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141 + K +Q P+ T E +R Sbjct: 64 KRYLEQHYVKIDPTVQHCMVSLQPLVWSSQSAKTQEEKDFWEEARSYGLNVGWAQSSRDF 123 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------------DFELTGR 189 IG + R D+L E A Y + S VH + LT R Sbjct: 124 IGTRGMLTLAR--SSDQLSEKEQKAQYTNMYWLSQTVHSSIAKVVNEMEFAQFNLYLTNR 181 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKTS EIA ILG++ TVN ++ + M+K + A AV ++ Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 254 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAQAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 206 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 44 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 103 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + D LT RE E L Sbjct: 104 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 156 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 204 >gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF-ELT 187 Y S T D + + ++ I L + AA + + + D H + ++ Sbjct: 120 YLSRTIDWDDLINSVDMVRSGNYPINDLVLNTPAVAAAVMDSFRQLTMDTHTEHVYSPMS 179 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G+T+ EIA L IS TV N+I+SI+RK A R+ A+ +A++ + Sbjct: 180 PREIEVLELVAAGQTNKEIAARLEISNQTVKNHISSILRKLAVNDRTQAVVFALQRGWI 238 >gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 231 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 15/183 (8%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF--------------CPVFHTLPENIT 121 +V + P ++ + + + + +R E+ V H L Sbjct: 45 PLVEAHQPDIVLMDINMPKVNG-VEATKRLMEVHPEVRVIILSIHDDETYVMHALGAGAV 103 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 + L + + + PK L + + ++ V Sbjct: 104 GYLLKEMATDELVNAIRSVYREGGYVHPKVTPNLLQEYRRLMKMKQTMSSQPIEKRVAEA 163 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L +++G ++ I+ L IS TV N+++SI+RK R+GA+ A+ Sbjct: 164 PLHVLTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVVEAI 223 Query: 242 RNN 244 R Sbjct: 224 RRG 226 >gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 46/85 (54%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 ++ +M ++ K ++LT RE + L I+ GK++ EIA L IS TV + Sbjct: 125 SSAIMPHVLTHMRTQHEPEKEKYYQLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTH 184 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 +++++ K R+ A +AV++++ Sbjct: 185 VSNLLAKLDVADRTQAALFAVKHHL 209 >gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 198 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 10/178 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128 + + + + PF MA +R ++ F H L + + P G + Sbjct: 28 DPMVRYLAHAQRPFRWRESMAAFNG---STHRRRMEQMMVDAFGHGLEDGYLFPIHGRNG 84 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 SL+ I + + + + R W + L ++ + + LT Sbjct: 85 ILGSLSLGGKPIELSPVEIALL-EAVARKTFWRLLELTGEA----EALETVLPAETPLTR 139 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++EG TS EI+ +L IS +TV+ Y+ + K K R A+A A R+ ++ Sbjct: 140 REMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGLI 197 >gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator [Thermoanaerobacter sp. X514] gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X514] gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 208 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L IS+G ++ EIA L +S TV N++ +I +K K R+ A Y ++N Sbjct: 144 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 203 Query: 245 IV 246 + Sbjct: 204 TI 205 >gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 309 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 + L S D + F+LT RE E L WI++GK++ +I ILG+S TV Sbjct: 220 AIGANEFLFRLTTENGMSDDETLRQHFQLTPRESEVLLWIAKGKSNRDIGEILGLSSRTV 279 Query: 218 NNYIASIMRKTATKTRSGAIAYAVR--NNI 245 ++ I K + R+ A A + + I Sbjct: 280 TKHLEQIYVKLGVENRASAAVKATQVLHGI 309 >gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L] gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L] Length = 210 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + + E + + M + + + ELT RE E L I+EGK++ EIA L I+ T Sbjct: 122 ETVLEPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLLIAEGKSNQEIADELFIALKT 179 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V ++++I+ K R+ A+ YA R+ + Sbjct: 180 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 >gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 132 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + + E + + M + + + ELT RE E L I+EGK++ EIA L I+ T Sbjct: 44 ETVLEPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLLIAEGKSNQEIADELFIALKT 101 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V ++++I+ K R+ A+ YA R+ + Sbjct: 102 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 130 >gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 254 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78] gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPVKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRR-LLDKYAGHLPSGEEQPPSTLQTLTE 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A +A + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVFAYESGLV 218 >gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 131 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 7/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 ++ + + Y ++ + +L+ +I R+ + L+ +Q Sbjct: 1 MYEHDEYLMDALQAGADGYLLKDSSSNQVVAAIRMLYRGDSVI-HPRMTK-KLITYHQQK 58 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M + ELT RE E L + +G ++ EIA +L IS TV +I I +K K Sbjct: 59 MK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVK 113 Query: 232 TRSGAIAYAVRNNIV 246 +RS A+ YAVRN +V Sbjct: 114 SRSQAVIYAVRNQLV 128 >gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 254 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 228 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191 RI + + I L Y A+ + + + T RE Sbjct: 113 HGRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREK 172 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GKT+ EIA IL IS T+ ++ +IM K + ++ AI AV I+ Sbjct: 173 EVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis serovar chinensis CT-43] Length = 210 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 48 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + D LT RE E L Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 >gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus RF122] gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus aureus RF122] Length = 207 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124 E L+ + + P ++ + + + + ++ V + ++ + Sbjct: 34 ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITVYIKAHYPDIKVLVLTSYVDDEHVIS 93 Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + Y + ++ + + ++I ++F++ Sbjct: 94 AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202 Query: 242 RNNIV 246 N ++ Sbjct: 203 ENKLI 207 >gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 253 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 135 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 192 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 193 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 250 >gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 229 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDE 205 +G + + + + +AA + F+ + L+ RE+E L ++ G+T+ E Sbjct: 121 RRGDYPINEMVLALPDVAAQVLSAFRQMVIDEDTQSIFSPLSPRELEVLELVAAGRTNKE 180 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ L IS TV N+++SI+RK A R+ A+ YA+R + Sbjct: 181 IALNLDISNQTVKNHVSSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 210 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + P V F + Y T Sbjct: 48 PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVXVTSFLDDEKLYPVIEAGATSYLLKTSR 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + + ++ E + + M + + + ELT RE E L Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EGK++ EIA L I+ TV ++++I+ K R+ A+ YA R+ + Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208 >gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 235 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + +L V + G + PK + + + E LA N Sbjct: 98 VTHVLKTGASGYLLKEMDTEALIEAVKVVGNGGSYIHPK---VTHNLIKEYRRLANETGN 154 Query: 172 MFKS--YDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + +V + + L T RE E L +++GK++ I L IS TV N++++I++K Sbjct: 155 NGEIGFREVEYRRPLHLLTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKM 214 Query: 229 ATKTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 215 GMNDRTQAVVDAIKNG 230 >gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] Length = 151 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + + E + + M + + D LT RE E L I+EGK++ EIA L I+ T Sbjct: 63 ETVLEPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLLIAEGKSNQEIADELFIALKT 120 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V ++++I+ K R+ A+ YA R+ + Sbjct: 121 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 149 >gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 213 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 30/189 (15%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPE------- 118 EQ + +V ++ P L+ + + + + + ++ H E Sbjct: 39 EQCIQKVVDTN-PDVLLLDINMPTMNGLQTLQELRRNNNKQKVLMLTIHNEIEYLLRAVD 97 Query: 119 -NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 + D+ L + I G + P L++R+ Sbjct: 98 IGVNGYVLKDSESSVLKKAIYTIYQGETYIEPSLTPELKERMQSPS-------------- 143 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE++ L ++EG + EIA L IS TV N++++I +K + R+ A Sbjct: 144 --SSNTEILTRREIDVLKLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDRTQAA 201 Query: 238 AYAVRNNIV 246 YA++NN V Sbjct: 202 VYAIKNNFV 210 >gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 264 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL+ +++ + ++ + LT Sbjct: 146 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLSEFKSMIQRTDERRLVPAPRLTD 203 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 204 REMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261 >gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL+ +++ + ++ + LT Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLSEFKSMIQRTDERRLVPAPRLTD 189 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 190 REMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 249 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 131 GYLLKEISTDEVSTAIRAVADGQSQISPS--MAAKLLTEFKSMIQRTDERRLVPAPRLTD 188 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 189 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510] gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510] Length = 310 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 50/145 (34%), Gaps = 20/145 (13%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 L R P P + P G R T+ + + ++ Sbjct: 181 AAGLVRLRRPSPPGGAMEPFALELPDGEGVRRLEFTYLSPAGPDEYLFRLSEPTAGRQEA 240 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + L LT RE E L WI+ GK + +I ILGIS TVN Sbjct: 241 ILRDAL--------------------GLTAREAEVLLWIANGKPNRDIGEILGISPRTVN 280 Query: 219 NYIASIMRKTATKTRSGAIAYAVRN 243 ++ + K + R+ A A A+R Sbjct: 281 KHLEQVFAKLGVENRASAAALAIRT 305 >gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum] Length = 233 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 18/173 (10%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 Q Q+L+ +++ +P D + + E ++ + R PV E G + + Sbjct: 68 QIQRLERVLNVSYPSDWLDQY-MKENYAQHDPILRIHLGQGPVM--WEERFNRAKGAEEK 124 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + G+ R + L G + L+ R Sbjct: 125 RFIAEATQNGMGSGITFSAASERNNIGSILSIAG---------------REPGNMPLSQR 169 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 E + W+S GKT+ EIA IL IS TV ++A+++RK R+ AI + Sbjct: 170 EYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMH 222 >gi|146343657|ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196463|emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families (two-component signal transduction system) [Bradyrhizobium sp. ORS278] Length = 305 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +F LT RE E L+W+S+GKT+ +IA ILG+S TV+ ++ I K + R+ A A Sbjct: 236 EFSSEFGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295 Query: 239 YA 240 A Sbjct: 296 IA 297 >gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] Length = 215 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2] Length = 297 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 46/107 (42%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D+ I + F I + + L + ++ +T RE E L Sbjct: 187 DLKESAILTINCFLSPLPIQYLGIQDSYHLLKVVEPSTSKTSTYLQENLPITKRESEVLY 246 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 WIS GKTS EI+ IL IS T N ++ I +K ++ A A A+R Sbjct: 247 WISFGKTSWEISQILDISPRTANKHLEQIYKKLGVDNKTSAAAIALR 293 >gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 209 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + R++ + ++ M + + Sbjct: 94 IEAGAAGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKM---------MDRLTNRTPIL 144 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA + Sbjct: 145 HEDLTNREQEVLLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFK 204 Query: 243 NNIV 246 + ++ Sbjct: 205 HGLI 208 >gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10] gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10] Length = 209 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y T I + R++ + ++ M + + Sbjct: 94 IEAGAAGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKM---------MDRLTNRTPIL 144 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA + Sbjct: 145 HEDLTNREQEVLLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFK 204 Query: 243 NNIV 246 + ++ Sbjct: 205 HGLI 208 >gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P + + L L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPD----IANALLSQTLPVEEKEE 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 DV LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 147 EPSIVDV-------LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 199 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 200 DRTQAALYAVKNGIV 214 >gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262] gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262] gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL F2-208] gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378] Length = 212 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + +++ E + + ++ ++ S T + I Sbjct: 53 MDLVMD-EMDGIEATKEIMKNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K+ LT RE E L I+ Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 211 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 5/194 (2%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG DL E + D +V D ++ + + +V L Sbjct: 22 LEVVGECGDGRAAVDLAHELRPDVVVM-DVRMPILDGIGATRLLAGPDVEAPTKVLIVTT 80 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F+ + + A++ G+ + ++ + + L+ Y + + Sbjct: 81 FNLDEYVYEALRAGASGFLLKDARPAQLLQGIRTVAAGTSLLAPEVTRQ--LVGRYASRI 138 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 G LT RE++ L I++G ++ EIA L +S TV Y++ ++ K + Sbjct: 139 RPPQRAQEGS--ALTPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRD 196 Query: 233 RSGAIAYAVRNNIV 246 R A+ YA R+ +V Sbjct: 197 RVQAVVYAYRHGLV 210 >gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 13/223 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L+V + Q+ V + P ++ + Sbjct: 1 MTIRVLLVDDQPLLRTGFRMILE---AESDLVVVGEAGDGQQALDQVRALQPDVVLMDIR 57 Query: 92 LSEKDKYYNVLQ-------RPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIG 143 + D + P ++ L E + + + + Sbjct: 58 MPRMDGVEATRRIAGPDRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDVPAEELVQA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ ++ LL Y + + LT REVE L ++ G ++ Sbjct: 118 IRVVADGAAMLAPSVTRR--LLDMYATKLPSGDEAPPQALTVLTEREVEVLRLVARGLSN 175 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 176 AEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESGLV 218 >gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (luxr family) [Ralstonia solanacearum PSI07] gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum PSI07] Length = 238 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 27/248 (10%) Query: 13 NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72 N +++ F + SD+ A + + + G L + Sbjct: 3 NWQEDLIDIFSEAATSTSDVFAHIEAAALALGFEHVA------YGFRAPLPLSEPKI--- 53 Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGM 126 I+ +++P + + Q P P+F P Sbjct: 54 ----ILLNNYPQAWRERYLEAGYLHVDPSVAHACRSQAPVIWSDPLFQYTPALWDEAQAQ 109 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDV 178 R + + +G ML + L R + + +A + D+ Sbjct: 110 GLRVGWAQSSLDSLGVGGMLSLSRSCEPLTARELADNTRRMQWLTHMAHLALSRLLRADL 169 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 D LTGREVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K ++ A+ Sbjct: 170 AGDSDDSLTGREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVV 229 Query: 239 YAVRNNIV 246 A + Sbjct: 230 RAAMLGYL 237 >gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 205 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L IS G ++ EIA L +S TV N++ +I +K K R+ A Y ++N Sbjct: 141 DLTPREIEILKLISNGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200 Query: 245 IV 246 + Sbjct: 201 TI 202 >gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 13/177 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNR 129 +V+S P ++ + + E D + + + P+ + A N Sbjct: 41 RMVTSVNPDVVLLDIRMPEGDGLTTLGRIKLERPDLPILILSTYDNPTYVARAVALGANG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y R+ + RD L + + ++ + LT R Sbjct: 101 YVLKGDPRDRLVDAIHTAANGESAWTRDELRRV-------TGALATPRLNADVEVPLTQR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L ++ G T+ EIA L IS TV ++ I+RK R+ A +AVR +V Sbjct: 154 ESEVLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVRKGLV 210 >gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 211 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EGK++ IA L IS TV ++++I+ K R+ A+ YA ++N+ Sbjct: 148 LTAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDRTQAVVYAFQHNL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 85/205 (41%), Gaps = 22/205 (10%) Query: 55 YVGASHFLLVRWD-------LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQR 104 +G S +L + D ++ +D + P ++ + + D N++++ Sbjct: 14 RIGVSSYLSAQKDIDVVAEANDGDEAVD-LALQLKPDIILMDLVMKRMDGIEATKNIIEK 72 Query: 105 PTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 E + + ++ ++ Y T I + + I+ + + Sbjct: 73 WPEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSKAKDIADAIRATYGGQSILEPEVTGK 132 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 I + M K + H +LT RE+E L ++EGK + EIA L I+ TV ++ Sbjct: 133 I------MSQMRKKQEAHL--HDQLTEREMEVLKLMTEGKANQEIADELYIALKTVKVHV 184 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++I+ K R+ A+ YA +NN++ Sbjct: 185 SNILNKLEVHDRTQAVIYAFKNNLI 209 >gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato str. DC3000] Length = 254 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 25/198 (12%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK----------YYNVLQRPTELFCP 111 L+ + QE + V P ++ + + E D Y NV F Sbjct: 30 LVGEANNGQEALMK--VEETQPDIVLMDLYMPEMDGIEATACIKKEYPNVKVLVLTSFSD 87 Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 H LP +G Y + ++ + + + D + ++ + Sbjct: 88 QAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD------IASSLLSQ 137 Query: 172 MFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 138 TLPQEEAEVPSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKL 197 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 198 QLSDRTQAALYAVKNGIV 215 >gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato Max13] gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato K40] gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 254 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|261407693|ref|YP_003243934.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284156|gb|ACX66127.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 220 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 11/180 (6%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 L +V D ++ + + L + F + Y Sbjct: 46 LLPDVVLMDLNMPVLNGID--TTARLKKELPHIKVIVLTSFVDYDHVLPAIRAGARGYLL 103 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------L 186 + + G+ +F + D GLL + + + + E L Sbjct: 104 KDIEPEELVAGIRRVFQGQVELHPDA---AGLLMTHVTSPAGEDEANGSSHQEAAQLDKL 160 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L I+ G + EI+ L I+ TV +++ ++ K R+ A YA+++ IV Sbjct: 161 TRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220 >gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 304 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 41/79 (51%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L + + K+ +LT RE E L WI+ GKT+ EIA IL +S TVN ++ Sbjct: 220 VLLRLEDGDKPTGPALLKKELDLTDRESEVLHWIANGKTNREIAEILEMSPRTVNKHLEQ 279 Query: 224 IMRKTATKTRSGAIAYAVR 242 I K + R+ A A+R Sbjct: 280 IFPKLGVENRTSAAGVALR 298 >gi|304406459|ref|ZP_07388115.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344517|gb|EFM10355.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 220 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y + + + ++ + D + + A + D + Sbjct: 95 IRAGAKGYLLKDIEPDELVRAIRRVWQGQVELHPDAASRLMNILAEPESNRDDPDEAAKR 154 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L I+ G ++ EI L I+ TV +++ ++ K R+ A +AV+ Sbjct: 155 LSELTKREHEVLRLIATGMSNKEIGDSLSITEKTVKTHVSHVLEKLGFADRTQAAIFAVK 214 Query: 243 NNI 245 I Sbjct: 215 QGI 217 >gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans TK24] Length = 252 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 134 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 191 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 192 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 249 >gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] Length = 309 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 R + D + + AG + + R G L Sbjct: 146 RHLLAVRGDGTVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQGTFTL 205 Query: 148 FPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + L+ + L A S D + F LT RE E L WI++GK++ Sbjct: 206 QRASQTGLQISYLGAIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSN 265 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR--NNI 245 +I ILG+S TV ++ I K + R+ A A + + I Sbjct: 266 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQVLHGI 309 >gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 232 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGK 201 GL+ + + + L Y ++ F + +LT REVECL W S G Sbjct: 127 GLIAFIGIPSDLSGVIINLLHLAGLYTSSRFAALLFEEATNPTDLTPREVECLKWSSNGL 186 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TS EIA LGISR+T + Y+ +K + R+ A+ A R ++ Sbjct: 187 TSSEIAEKLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKGLI 231 >gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 349 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189 AR GL+ + + + + + L A + AN+ S + LT R Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244 E E L+W SEG+T+ EI L IS TV +I +I+ K + A+ R+ Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVGRQGDRHG 235 >gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 257 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 13/183 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 ++S P ++ + L D + ++R V ++ E+ + Sbjct: 45 LISEHEPDVVLTDLNLPNMDGLEFTRTIRRQYPNIGVVMLSVYESDEHAFNALRAGAAAY 104 Query: 135 FDVA---RIRIGLMLLFPKGRIILRDRLWEIGLLA--------AYQANMFKSYDVHWGKD 183 + + ++ +G ++ D ++E +A Q + D+ Sbjct: 105 YSKEISPKTLATVLRRVARGEYVINDVMFEDPRVADRILTQFRGLQTGIVAEPDLDISLF 164 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L I+ G T+ +IA L IS TV N+I+SI+RK + R+ A+ YA+R Sbjct: 165 SPLSDREIEVLEHIASGATNKDIADALKISTQTVKNHISSILRKLSLNDRTQAVLYALRR 224 Query: 244 NIV 246 + Sbjct: 225 GWI 227 >gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 16/170 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D L+R EL P F + Y Sbjct: 54 PDVILMDIKMPGTDG-IEALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDI 112 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + + LL Q + S + LT RE E L+ Sbjct: 113 DPDALAGAIRSVHAGHVLLQPE--VAVALLT--QDDQGPSS----SRGGALTDREREVLS 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ I Sbjct: 165 HIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214 >gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 251 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 133 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 190 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 191 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 248 >gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 213 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 10/215 (4%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93 AR++ D V + L E + V ++ Q +I + P ++ + + Sbjct: 4 ARVVIADDHVLVREGLRKLLE---LDSNIKVIDEVGDGQGAINIARKEKPDIIIMDVNMP 60 Query: 94 EKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 D V++R + T+ E + + + G L+ Sbjct: 61 GTDGIVATRVIKRELPSVRIIALTVYEGEEVVDMVKAGASAYIL---KDVAGSELVDTIH 117 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R++ + + + + +S + + LT RE + LT + +G T+ E+A ++ Sbjct: 118 RVMNGEVVIYPRVANRLVRELRQSEN--RKSEIRLTKREKDVLTLLVKGNTNKEMAEVMF 175 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV N++ SI RK K R+ A YA++N IV Sbjct: 176 ISEKTVKNHLTSIFRKLGVKDRTHAAIYALKNRIV 210 >gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 306 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L WI+ GKT+ EIA IL +S TVN ++ I K + R+ A A+R Sbjct: 242 ELNLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVALR 301 >gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 252 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 134 GYLLKEISTDEVSTAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 191 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 192 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 249 >gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 250 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 189 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] Length = 254 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 26/194 (13%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF--C 110 E+ + H+ F++ +D ++S R + D + F Sbjct: 75 VEHYNSHHY------YFKDPGMDHLLSG-------RKVDQLWTDYTVRPTSKVDSDFFND 121 Query: 111 PVFHTLPENITPPAGMDNRYCS--LTFDV-ARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L +T P N++ +F R ++G +L+ A Sbjct: 122 VRSAGLKFGVTIPLECSNKHLVGGASFASCERTQLGFDAQMTSNYPVLKG--------AV 173 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + + + + F T RE ECL W++ G+ + EIA IL +S TV ++I +K Sbjct: 174 HLFHTYAQEPETLSEFFGFTPREHECLLWLTAGRANKEIAHILNLSEKTVEHHIKRACKK 233 Query: 228 TATKTRSGAIAYAV 241 R+ A+A A+ Sbjct: 234 LRVTNRTHAVARAM 247 >gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 307 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 R + D + + AG + + R G L Sbjct: 144 RHLLAVRGDGTVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQGTFTL 203 Query: 148 FPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + L+ + L A S D + F LT RE E L WI++GK++ Sbjct: 204 QRASQTGLQISYLGAIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSN 263 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR--NNI 245 +I ILG+S TV ++ I K + R+ A A + + I Sbjct: 264 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQVLHGI 307 >gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 225 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 14/225 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYV---GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 + ++ +D + + + L + G + F +V +Q L ++ S P ++ Sbjct: 4 QTILPILLVDDELRFRQGLRTLLSFYSATGTTTFEIVGEAATVDQALT-LIHSQRPALVL 62 Query: 88 RCMALSEKDKYYNVLQRPTELF---CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + L++ D + + F V E+ M + F Sbjct: 63 LDLELAQGDGVELLTRLRGSAFAGKVLVLSAHQEDDWVFRAMQSGASGYVFKTHLAAQLC 122 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGK 201 + +LRD ++ +A +F + V LT RE E L W+ G Sbjct: 123 AAITT----VLRDEIYLPPEVATQFFRLFHYYAGHTVQSRSRIHLTEREQEVLHWLVRGA 178 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++DEIA L I+ TV ++++I K +R+ AI A++ +V Sbjct: 179 SNDEIARNLYITIATVKAHLSAIFEKLQVTSRTQAIVAALKLGLV 223 >gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis] gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis] Length = 277 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S G+ L+ RE+E L W+ GKT+ EI I+ +S T+ N++ +I+RK + RS Sbjct: 202 STTARNGRIKPLSKRELEVLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRS 261 Query: 235 GAIAYAVRNNIV 246 A + A++ ++ Sbjct: 262 QAASKALKLGLI 273 >gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 242 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 14/236 (5%) Query: 25 HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLD-SIVSSD 81 HL +L + + G S+ + +V +++ +++S Sbjct: 6 HLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGFVLAST 65 Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRYCS 132 P R + ++R P TP AG + Sbjct: 66 MPEGWARRYVTQGYALHDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGIRAGIT 125 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGRE 190 + F G + + + I + L+A Y + L+ RE Sbjct: 126 VPFVTLDGEPGGISVSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPARLSPRE 185 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W +EGKT EI +++GI+ V+ ++ S K T R+ +A A+R+ ++ Sbjct: 186 REALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGLI 241 >gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 254 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADHLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] Length = 223 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + + G ++PK L +RL+ + + Sbjct: 91 VLELLKNGALGYLLKDVEPNVLIKAIHMVNEGNPFVYPK----LAERLFGSTAVYGDVSR 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M K + LT RE++ L I++G ++ +I LG+S TV N++ SI K Sbjct: 147 MAKEI-WDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSIFHKLKVN 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ Y ++N IV Sbjct: 206 DRTQALVYVLKNKIV 220 >gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 248 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 12/180 (6%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 EQ+ D +V + F+ + DK + VF G+ Sbjct: 73 EQQNDPVVK--YIFEKQSPI---RWDKLVEYQDFSSTKGLLVFEKA-AAYGLYNGLSIPI 126 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDFEL 186 S + ++A + + R++ +++ L Y + D + EL Sbjct: 127 RSTSENIAVFSVAIDERSDANRVLDNAQMFCHTFATHLFERYVLLEISASDETDRR--EL 184 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+ECL W EGKT+ EI+ I+ +S TV ++ + K R A+A A++ I+ Sbjct: 185 TKRELECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVALAIKKGII 244 >gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3] gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4] Length = 269 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 17/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 31 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 90 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 91 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 150 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 151 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 210 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W EGK+S +I+ ILG S+ TV ++ + K T R +I+ A+ + Sbjct: 211 AWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 262 >gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 253 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + + Y + + + + +I L+ + A +S Sbjct: 121 DTDLFEAIKAGASGYLLKEISIDEVPQAVRAVHGGQSLISPS--MASKLITEFAALAKRS 178 Query: 176 YD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + +LT RE+E L ++ G + EIA L IS NTV N++ +I+ K +R Sbjct: 179 EERQQQVPAPKLTEREMEVLRLVARGLGNREIAKELFISENTVKNHVRNILEKLQLHSRM 238 Query: 235 GAIAYAVRNNIV 246 A+ YAVR ++ Sbjct: 239 EAVVYAVREKLL 250 >gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b] gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 240 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 17/233 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDWPFDL 86 R + + + + + E +G +F L+ F ++ + S +P D Sbjct: 10 RGETEIQFQAVTAVLQLKALLQKHIETLGFDYFAFLIQHPVPFTRPRI--FLFSTYPEDW 67 Query: 87 VRCMALSEKDKYYNVL---QRP---TELFCPVFHTLPENITPPA--GMDNRYCSLTFDVA 138 V+ VL QRP E +F G+ + + Sbjct: 68 VKHYESENYYAVDPVLLLCQRPGHGVEWTRDLFTGAGNLWAEANAYGLMSGFSCSAMASN 127 Query: 139 RIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKS--YDVHWGKDFELTGREVEC 193 R L + + R+ ++ LA + + + + + RE+E Sbjct: 128 RAIGILSIASGQQSKTQHLRVELEVKLHFLAELSLRVLERLNDNAMVVLSNDFSQRELEI 187 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W +EGKTS EI++IL IS +TVN + ++ ++ ++ YA ++ Sbjct: 188 LKWTAEGKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240 >gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +L+ RE+E L + +GKT+ +IA L +S TV +++ I K R+ A YA+ Sbjct: 144 NNKLSKREMEVLKEMVKGKTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIE 203 Query: 243 NNIV 246 N ++ Sbjct: 204 NKLI 207 >gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri] gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri] gi|225902|prf||1403259A luxR gene Length = 250 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 17/232 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 12 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 71 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 72 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 131 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 132 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 191 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W EGK+S +I+ ILG S+ TV ++ + K T R +I+ A+ + Sbjct: 192 AWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 250 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 189 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete 8FN] Length = 210 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 38/75 (50%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + LT RE E L ++ GKT+ EIA L IS TV ++ +I+RK Sbjct: 136 ALATPRLDLDVEVPLTAREAEVLKHLTSGKTNKEIANSLTISYETVKEHVQNILRKIGVT 195 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A R IV Sbjct: 196 DRTQAAVWAFRKGIV 210 >gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp. aureus ST398] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 17/185 (9%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124 E L+ + + P ++ + + + + + V + ++ + Sbjct: 34 ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPHIKVLVLTSYVDDEHVIS 93 Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + Y + ++ + + ++I ++F++ Sbjct: 94 AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202 Query: 242 RNNIV 246 N ++ Sbjct: 203 ENKLI 207 >gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754] gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus COL] gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754] gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus O11] gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus O46] gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus T0131] gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124 E L+ + + P ++ + + + + ++ V + ++ + Sbjct: 34 ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVLVLTSYVDDEHVIS 93 Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + Y + ++ + + ++I ++F++ Sbjct: 94 AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202 Query: 242 RNNIV 246 N ++ Sbjct: 203 ENKLI 207 >gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 886 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 23/254 (9%) Query: 2 NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61 F++ ++ ++ R + R L + + S + +V + Sbjct: 646 EFDVSTIDDLMVELVRVRLLLLRGDSRRLSPLPSLHGILGDRSVDRYYH----FVESRKI 701 Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 L+ R +L + D + SD +L+ ++K L L E + Sbjct: 702 LMARLELHRGGFDDLLSVSD---ELINAGRKLGRNKSVIELSILRSLAL-------EGMG 751 Query: 122 PPAGMDN---RYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMF---- 173 P +N ++ +R+ + P I+ R ++ L Y + Sbjct: 752 KPEDAENVLLFILPEAYEAGFLRLFVDEGPPLAFILCRLEKKVTNSFLREYIGKILTLIE 811 Query: 174 -KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K+ D K L+ RE+ L ++ G T+ EIA L IS TV + +I +K K Sbjct: 812 KKASDAGSCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKN 871 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ A + I+ Sbjct: 872 RTEAVVKANISGII 885 >gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 131 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 188 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 189 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m] Length = 260 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 84/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G++ R D L E + ++ +N + + LT R Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL SEGKTS +IA IL I+ TVN ++ + RKT + R AIA V + I+ Sbjct: 187 ETECLFCASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSGIL 243 >gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 214 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 17/218 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R++ +D + + +L E F +V E+ L I LV + + Sbjct: 6 RLVVVDDHALFRRGLISLLE--EMPEFDVVGEASDGEEALKVIAQRHPDIALV-DVNMPR 62 Query: 95 KDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 D V + L + + I N Y + +R L+ + Sbjct: 63 MDGIALVQALRRQKSALKVLMLTISQEDQDLIGAIRAGANGYILKNTEPEDLRKALLNIA 122 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 ++ + + +L Q S L+ RE+E L ++EG T+ +IA Sbjct: 123 EGKGVLSPEVV--PPVLGVMQRGTLDSSPQL------LSDRELEVLQCLAEGLTTQQIAS 174 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS NTV +I I+ K R+ A+ A + I+ Sbjct: 175 RLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGIL 212 >gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124 E L+ + + P ++ + + + + ++ V + ++ + Sbjct: 34 ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVLVLTSYVDDEHVIS 93 Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + Y + ++ + + ++I ++F++ Sbjct: 94 AINKGADGYEMKDIEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202 Query: 242 RNNIV 246 N ++ Sbjct: 203 ENKLI 207 >gi|222153503|ref|YP_002562680.1| response regulator protein [Streptococcus uberis 0140J] gi|222114316|emb|CAR42990.1| response regulator protein [Streptococcus uberis 0140J] Length = 213 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 13/175 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--ITPPAGMDNRYCSL 133 + P LV + + E L+ + PE + + +DN Sbjct: 43 ELALELKPDVLVMDLVMPELGGVEATLE--------ILKEWPEAKILVLTSYLDNEKIYP 94 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREV 191 D + ++ I+ + G LA K++D ELT RE Sbjct: 95 VIDAG-AKGYMLKTSSAAEILNAIQKVAKGQLAIETEVDKKIKAHDRKPNLHDELTAREY 153 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L +++G + IA L IS TV ++++I+ K R+ A+ YA R+++V Sbjct: 154 DILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208 >gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 131 GYLLKEISTDEVSTAIRAVADGQSQISPS--MAAKLLTEFKSMIQRTDERRLVPAPRLTD 188 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 189 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|110680752|ref|YP_683759.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] gi|109456868|gb|ABG33073.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 17/153 (11%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + ++ L PVF + L I P R+ F + + G P Sbjct: 163 TALRVLRDTENVEPQQILGGPVFKSWLDSCIQLPTSQTRRFSCEDFTLDFLGGG-----P 217 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 G ++L+ A +NM S + F+LT RE E L W+S GKT+ +IA I Sbjct: 218 SGELLLQ---------IARTSNMRPS--TYLETAFDLTPREAEVLYWLSMGKTNRDIAQI 266 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L +S T+N ++ + +K R+ A A R Sbjct: 267 LSLSSRTINKHLEQVFQKMGVDNRTAAAVAADR 299 >gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 251 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 133 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 190 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 191 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 248 >gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 209 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 9/124 (7%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + Y T I + ++ GR++ ++ ++ + ++ Sbjct: 94 IEAGASGYLLKTSAAHDIAQAIRTIYQGGRVVEPQVSNKL---------RNETSNRNFHL 144 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L IS GK++ EIA L I+ TV ++++I+ K + R+ A YA + Sbjct: 145 HDELTNREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFK 204 Query: 243 NNIV 246 + + Sbjct: 205 HGYI 208 >gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +F LT RE E L+W+S+GKT+ +IA ILG+S TV+ ++ I K + R+ A A Sbjct: 236 EFSSEFGLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295 Query: 239 YA 240 A Sbjct: 296 IA 297 >gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 305 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + D + F LT RE E L WI++GK + +I ILG+S TVN ++ I K + R Sbjct: 232 PNQDETLRRHFGLTAREAEVLLWIAKGKANRDIGDILGLSPRTVNKHLEQIYAKLGVENR 291 Query: 234 SGAIAYAVR 242 + A A + Sbjct: 292 ASAAVRAAQ 300 >gi|116694039|ref|YP_728250.1| response regulator [Ralstonia eutropha H16] gi|113528538|emb|CAJ94885.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 297 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + W++ GKT+ +IA ILG+S TVN ++ I K +TR+ A+A A R N+ Sbjct: 236 LTLREAEVMAWVARGKTNRDIADILGMSPRTVNKHLEHIYEKLGVETRTAAVA-ATRRNL 294 >gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 209 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + + H D LT RE E L ++ G + EIA L IS TV ++ Sbjct: 126 AAQVTGKMMERLRKPTSHLHDD--LTEREQEVLQLMARGMANQEIADELFISLKTVKTHV 183 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++I+ K R+ A+ YA ++NIV Sbjct: 184 SNILSKLDVVDRTQAVVYAFKHNIV 208 >gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L] gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W] gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L] gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W] gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 216 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 76/222 (34%), Gaps = 29/222 (13%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ R++ +D + AL + + ++ + Q S+V + P ++ + Sbjct: 1 MMIRILLVDDQSLIRRGLKALLK-LEEDLQVVGEAENGQ--TAISLVKTLQPDVILMDIR 57 Query: 92 LSEKDKYYNVLQRPTE---LFCPVFHTLPE----------NITPPAGMDNRYCSLTFDVA 138 + D + + V T + D L + Sbjct: 58 MPVMDGVAATREICQQFPDTKVLVLTTFDDDQYVTQAIQCGAAGYLLKDTPPEELAQSIR 117 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 ++ G L P + ++ + S W ELT RE E L I+ Sbjct: 118 AVQKGYTQLGPGIGRKVAAQMRDP----------TPSPPPGWD---ELTPREQEILRLIA 164 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G ++ EIA L IS TV N++ I+ + + R+ A A Sbjct: 165 TGASNREIAQTLYISEKTVKNHVTHILSRLNVRDRTQAAILA 206 >gi|302554629|ref|ZP_07306971.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472247|gb|EFL35340.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 235 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D + V + G L P + L +RL E G Sbjct: 107 FPALAAGARGYLTKDAGGEVIVRAVHSVLSGEAGLSPSVQRRLLERLAEGG--------- 157 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE E L I++G ++ EIA L +S TV +I ++ KT K Sbjct: 158 -TRPPAPPEVPDGLTARETEVLVLIADGLSNQEIARRLHVSTATVKTHINNLFTKTGLKD 216 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA +V Sbjct: 217 RAQAVRYAYGKGLV 230 >gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 F H LP +G Y + ++ + + + D LL+ Sbjct: 85 FSDQAHVLPALKAGASG----YILKDIEPDQLVEAIRSAYKGNIQLHPD--IANALLSQT 138 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 K + D LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 139 LPQEEKEEEPSVQVDV-LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHMSSILSKL 197 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 198 HLSDRTQAALYAVKNGIV 215 >gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 257 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 26/254 (10%) Query: 15 EDEQRTSFVSHLPTRS--DLLARMIPLDCTVSWTMRMYALTEYVGA--SHFLLVRWDLFQ 70 + ++ +S L + D+ + + + L V S L + Sbjct: 5 DGPKKLPRLSKLDALTLLDITVKCLECSTEAEYKQIFALLNTIVPFDQSTSGLAKLSSDG 64 Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--------------FHTL 116 + + + ++P + ++ +++R F P F TL Sbjct: 65 AVESYELANINYPVEWLQTYKEKNFSGIDVIVKRNFTSFTPQYWDHTYKAHKPAREFITL 124 Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANM 172 + G F F P IL+ + + L ++ + Sbjct: 125 ASDFNLIHGYTYGARPFGFCKQASLFSFSGNFKKYDPTVIAILQTIVPHLHLASS---RI 181 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +S + + L+GRE E L+W+ GK+S +I+ IL IS TVN +I +I++K + Sbjct: 182 IESRLIQHNRKL-LSGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQN 240 Query: 233 RSGAIAYAVRNNIV 246 R A+A A I+ Sbjct: 241 RPQAVAVATHLGIL 254 >gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus TW20] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 43/84 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 ++ ++F++ +L+ RE+E L + +GKT+ EIA L +S T+ +++ Sbjct: 124 KMIHLKAQDVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVS 183 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K R+ A YA+ N ++ Sbjct: 184 HIFSKLQVSDRTQAAIYAMENKLI 207 >gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 224 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ ++ EIA L IS TV ++++I+RK + RS AI Y+ +N + Sbjct: 160 LTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRSQAIVYSYKNGL 219 Query: 246 V 246 + Sbjct: 220 I 220 >gi|171778156|ref|ZP_02919413.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283138|gb|EDT48562.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 214 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + + L E K D +V DLV +S + +L+ E V Sbjct: 30 VEVVGEAGNGIEGIKLALELKPDVVV-----MDLVMP-EMSGVEATLKLLKEWKEAKILV 83 Query: 113 FHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 + +N Y T A I + + I + Sbjct: 84 LTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------V 132 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 K++D +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 133 DKKIKAHDQKPELHEDLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLE 192 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A+ YA ++++V Sbjct: 193 VDDRTQAVVYAFKHHLV 209 >gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170 V L + D L + G + L P +L L QA Sbjct: 91 VLPALKAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIASALLSQTLP--------QA 142 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +S ++H LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 143 EKQESSNIHVDV---LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNL 199 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A YAV+N +V Sbjct: 200 SDRTQAALYAVKNGVV 215 >gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 198 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 176 YDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 DV + K + LT RE E L W +EGKTS EIA ILG++ TVN ++++ M+K + Sbjct: 127 NDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKI 186 Query: 235 GAIAYAVRNNIV 246 A AV ++ Sbjct: 187 SAAIRAVMLGLL 198 >gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp. aureus ED133] Length = 207 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 43/84 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 ++ ++F++ +L+ RE+E L + +GKT+ EIA L +S T+ +++ Sbjct: 124 KMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVS 183 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K R+ A YA+ N ++ Sbjct: 184 HIFSKLQVSDRTQAAIYAMENKLI 207 >gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis] gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 18/186 (9%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 L + Q ++ D I+ ++ + E + ++ L ++ Sbjct: 32 LSALNRIQRRRPDLILLD----AMMPGLDGFETCQRIKADAATADIPVLFMTALTDSEHV 87 Query: 123 PAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 G Y + + + + RI+ R AA QA D Sbjct: 88 VKGFAAGGIDYVTKPINTEEVLARVASHLRTARILQTAR-------AASQAQPLTLNDEP 140 Query: 180 ----WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 F+LT REVE L W++ GKT+ +I ILG+S TVN ++ + K +TR+ Sbjct: 141 AYATLSARFQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTA 200 Query: 236 AIAYAV 241 A + A+ Sbjct: 201 ATSVAL 206 >gi|298346055|ref|YP_003718742.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315657448|ref|ZP_07910330.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236116|gb|ADI67248.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315491920|gb|EFU81529.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 248 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D + L + + G + P+ + + L Q + Sbjct: 115 FAALRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMF--APQLPGEQDEV 172 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ V LT RE E LT I++G T+ EIA L IS TV ++ +I+ K + Sbjct: 173 EEANLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARD 232 Query: 233 RSGAIAYAVRNNIV 246 R A+ +A N +V Sbjct: 233 RVQAVIFAYENGLV 246 >gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] Length = 211 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 12/166 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARI 140 DLV + + + ++Q P V L + PA Y T I Sbjct: 53 MDLVMDV-MDGIEATQRIMQDWPQAKIIIVTSFLDDEKVYPALEAGAKSYILKTSSAKEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + G ++ D + +I L + + + +D ELT RE E L I++G Sbjct: 112 AEAIRETY-SGEQVMDDEVNDILLAKDIKDSQPQLHD-------ELTRREYEVLLLIAKG 163 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L I+ TV ++++I+ K R+ A YA ++ +V Sbjct: 164 YSNQEIADELFITLKTVKTHVSNILAKLEVSDRTQATIYAYQHKLV 209 >gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] Length = 206 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 17/140 (12%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 +L V + SL + IG L P+ I L ++ +L+ Sbjct: 84 QLEAEVLAAMTAGADAYCLKSTDPASLLLAIRAAAIGSTYLDPQ---IAHIVLGQLSVLS 140 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 QA +L+ RE+E L I+EG ++ EIA LGIS +TV +I ++ Sbjct: 141 GGQA--------------QLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLA 186 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K + R+ A AVR ++ Sbjct: 187 KLSASDRTQAAIKAVRQGLL 206 >gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 207 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 17/179 (9%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127 LD + +++ P ++ + + + + + + V + ++ + ++ Sbjct: 40 LDYLENNEQPDIVLLDLVMPDMNGIEITEYLKNNYPNIKILVLTSYVDDEHVISALEKGA 99 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y + ++ + + RII D A + + S K L+ Sbjct: 100 DGYEMKDVEPQKLIETIHNVLDGKRIIHPD--------AKHVLDSMSSKPHFTNK---LS 148 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N ++ Sbjct: 149 KRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 7/172 (4%) Query: 77 IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P L+ + + D + + + + A Sbjct: 44 VVKQLQPHVLLFDVNMPRMDGVQVVKELHETCRNIKYVAITAFDDEDHLAALSSVGIDGY 103 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 + GL+ L R + R + +A F +LT RE E Sbjct: 104 VLKAS----GLVELLSAVRSVTRGENYVDPKVAGKLLTSFHRRREERDLLVDLTPREREV 159 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L W+S+G ++ EIA+ + +S TV N+++ ++RK R+ A A + + Sbjct: 160 LYWLSQGFSNAEIALKMVLSEKTVKNHVSHVLRKLELNDRTQAAVLAWKMGL 211 >gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 10/186 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----FHTLPE----NITP 122 +Q++ ++V WP ++R + P P+ I Sbjct: 54 KQQIANVVLHRWPLRWSERYFSRGYLFEDPTIRRVSTSSEPFVWSELQVGPDARANEIMR 113 Query: 123 PAGMDNRYCSLTFDVA--RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 AG C T + + + + + + L+A Y Sbjct: 114 EAGEFGLGCGFTVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAMYAFLRSLKLGEKP 173 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L WI+EGKT EI+ IL +S + V+ I K R A+A A Sbjct: 174 TPAITLTKREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALA 233 Query: 241 VRNNIV 246 +R+ I+ Sbjct: 234 MRSGII 239 >gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635] gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635] Length = 207 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 73/185 (39%), Gaps = 17/185 (9%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124 E L+ + + P ++ + + + + E+ V + ++ + Sbjct: 34 ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPEIKVLVLTSYVDDEHVIS 93 Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + Y + + L+ R++ +++ ++ ++ Sbjct: 94 AINKGADGYEMKDVEPQQ------LIETIRRVMNDEKMIHPKA-----QDVIETVSQKPH 142 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K R+ A YA+ Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202 Query: 242 RNNIV 246 N ++ Sbjct: 203 ENKLI 207 >gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 305 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 + L A S D + F LT RE E L WI++GK++ +I ILG+S TV Sbjct: 216 AIGANEYLFRLTAENGMSDDEMLRQHFHLTQRESEVLLWIAKGKSNRDIGEILGLSARTV 275 Query: 218 NNYIASIMRKTATKTRSGAIAYAVR--NNI 245 ++ I K + R+ A A + + I Sbjct: 276 TKHLEQIYVKLGVENRASAAVKATQVLHGI 305 >gi|295705373|ref|YP_003598448.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803032|gb|ADF40098.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 83/215 (38%), Gaps = 10/215 (4%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93 R++ +D + + E F++V ++ ++ + P ++ + + Sbjct: 4 FRILIVDDHAHAREGIRDILEEYE--DFIIVGEGTNGQEAIE-LTEKLMPDIVLMDIGMP 60 Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 D L+ ++ + IT + + + +L + + Sbjct: 61 VMDG----LEATKQIKLQFPYVKIVVITVSDDITDLFDALKKGAQGYLLKNLQSEVWYDY 116 Query: 154 ILRDRLWEIGL---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + L E+ + +A F D L+ RE+E L +++G ++ +I+ L Sbjct: 117 LRAFALDEVPMSKEIAFQILKEFPQETSIKKPDTPLSARELEVLQLVAKGLSNRDISAQL 176 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS +TV +++ +I+ K + R +YA +N + Sbjct: 177 FISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211 >gi|223694801|gb|ACN18083.1| two component transcriptional regulator [uncultured bacterium BLR5] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H+G++ LT RE E L ISEG ++ E+ L IS TV ++ +I+ K R+ A++ Sbjct: 146 HFGEE-NLTSRETEVLQLISEGNSNKEVGNRLSISEETVKGHVKNILGKLGANDRTQAVS 204 Query: 239 YAVRNNIV 246 AVR I+ Sbjct: 205 IAVRRGII 212 >gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 254 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 136 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 193 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 194 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 251 >gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 11/175 (6%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-----PENITPP-AGMDNRY 130 +V S P L+ + + D +++ P L E++ P + + Sbjct: 42 LVESLAPDVLLLDLKMPVLDGLGTLVRLAEHGLSPRVLVLTSVGDREDVAPAMRAGASGF 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D A + + + ++ + A LT RE Sbjct: 102 LYKDVDPAALVQAIRAVHGGQVLLAPE-----AAEAMLSVPAPAPAPAEGRYVAPLTDRE 156 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E LT I+ G+++ EIA L ++ TV ++++++ K + R+ A YAVRN + Sbjct: 157 REVLTLIASGRSNREIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211 >gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 246 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 23/247 (9%) Query: 19 RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLD-S 76 ++ + + + + + P V + A+ Y+ S+F++ D+ + KL Sbjct: 1 MSNQIPENEPQGEEIPPVSPRLLLVDDEPGLREAVQAYLEDSNFIV---DVAENAKLGWE 57 Query: 77 IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPEN-----ITPPAGMDN 128 ++ + P ++ + + E D Y + P PV + I + Sbjct: 58 LLQQNLPDLVITDIMMPEVDGYQFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCD 117 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------ 182 Y S FD + + L + ++ + A + + ++ GK Sbjct: 118 AYLSKPFDPEELVAIVKNLLERRAATRQEAEEGTPDITALAGQIARIENMLKGKTGINLS 177 Query: 183 ----DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + Sbjct: 178 PSPIKIDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVR 237 Query: 239 YAVRNNI 245 YA+ + + Sbjct: 238 YALEHGL 244 >gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 219 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + RP L F + + Sbjct: 49 DVVLMDVRMPEVNGLDAAATILASPSPDRPHVLMLTTFDVDDYVYEALRIGASGFMLKDA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ ++ + + ELT RE+E L Sbjct: 109 PSEELARAVRVVAAGDSLLAPSVTKRLIAEVTKSRSGVPKDSPRLR---ELTPRELEVLE 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV +++ ++ K + R+ A+ +A + +V Sbjct: 166 LIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQAVVFAYEHGVV 216 >gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1] Length = 201 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + ++ A A++ ++ W K+ L RE+E LTW++ GKTS EIA ILG+S+ TV+ +I Sbjct: 117 VSIINARLAHVARTD--VWVKEVNLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHI 174 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + K TR+ A AV ++ Sbjct: 175 DNARIKLGVATRTQAAIKAVTGKLI 199 >gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074] Length = 243 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 125 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 182 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 183 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 240 >gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023] Length = 212 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 16/168 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140 DLV + + +++ E + + ++ ++ S T + I Sbjct: 53 MDLVMD-EMDGIEATKEIMKNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198 + + ++ + M + K LT RE E L I+ Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKKLHDDLTNRENEILLLIA 161 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 217 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 10/181 (5%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 V ++++ +IV S P M LSE + + E V +T Sbjct: 44 VELPHYRDEHYMAIVDSSLPDLSEVKMTLSELEHVDATVLVNAEPNLGV----ESLLTWS 99 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGK 182 Y FD ++ GL + + RD L L Y N+ + ++ Sbjct: 100 NLKGLFYFEDDFD--KVIRGLKGILSGENWLSRDILNR---LLGYLVNLNHTVTELDTKL 154 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ LT + +G ++ +IA L +S +TV +++ SI RK K R A+A+A R Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 217 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 61/159 (38%), Gaps = 8/159 (5%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 R + L+E ++ L H + + + P + ++ IG + Sbjct: 65 RPLRLTEISAQAQSKEQKAFLEQAREHGITDGLIIPT------FGIRQNLGVFAIGQVKD 118 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 L + A Q M S G L+ RE E L WI+ GKT+ EIA Sbjct: 119 LKVLERASVFALQAVAQAAHTQMEMLASR--ADGLRTNLSNRETEILHWIALGKTNSEIA 176 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ILGI TV YI + K K RS A A+R I+ Sbjct: 177 TILGIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGII 215 >gi|294500004|ref|YP_003563704.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349941|gb|ADE70270.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 76/215 (35%), Gaps = 10/215 (4%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93 R++ +D + + E F++V ++ ++ + P ++ + + Sbjct: 4 FRILIVDDHAHAREGIRDILEEYE--DFIIVGEGTNGQEAIE-LTEKLMPDIVLMDIGMP 60 Query: 94 EKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 D + R + V + + + + L Sbjct: 61 VMDGLEATKQIKFRFPYVKIVVITVSDDITDLFDALKKGAQGYLLKNLQSEVWYDYL--- 117 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 R D + +A F D L+ RE+E L +++G ++ +I+ L Sbjct: 118 -RAFALDEVPMSKEIAFQILKEFPQETSITKPDTPLSARELEVLQLVAKGLSNRDISAQL 176 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS +TV +++ +I+ K + R +YA +N + Sbjct: 177 FISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211 >gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 250 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 132 GYLLKEISTDEVSTAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 189 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 85/241 (35%), Gaps = 24/241 (9%) Query: 6 QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65 Q V + L ED S +S R + + L E LLV Sbjct: 38 QPVRVFLADEDRHSRSVISQELMRDPRTILIGQASSYREARKGV--LAEEFDV---LLVD 92 Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125 L + Q D + V +A+S +K + V + L + Sbjct: 93 LSLGEGQGADLLELVQLRMPNVLSIAISSSEKGDAAMD--AFKKGVVGYLLKNSWF---- 146 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 Y +VA + + K L +Q + + K + Sbjct: 147 --GSYSQAVLEVANGGASISPIVAKKI-----------LPKIFQYSAPNEIPLEHKKFEK 193 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++GK + EI + IS TV+ ++ +I RK +TR+ A+ YAV I Sbjct: 194 LTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKGI 253 Query: 246 V 246 + Sbjct: 254 I 254 >gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 214 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 16/178 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMD 127 E +V D ++ + + + R ++ V T ++ Sbjct: 45 EATKPDVVLMDMQMPVMNGVEATR-----QIRARFPDVEVLVLTTYDDDELIWGGIQAGA 99 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186 Y ++ G+ + ++ + +AA + + E L Sbjct: 100 KGYLLKDAPPQQLLEGIETVARGQSLLSPE-------IAAKLVQVISQGGPARQEGAEGL 152 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E L I+ G + EIA L IS NTV +I+++ +K + R+ A+ A+ Sbjct: 153 TERETEILRLIASGAANKEIAAALFISENTVKTHISNLFQKLGARDRTEAVTKALARG 210 >gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614] gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 4/122 (3%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + Y + + + ++ +I + L+ ++ D G Sbjct: 93 SGASGYLLKDSSIEEVAQAVRVVADGQSLISPS--MAVKLIDEFKQMSRPERDHVPG--L 148 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L +++G + EIA L IS NTV N++ +I+ K +R A+ YAV+ Sbjct: 149 RLTERELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMYAVKEK 208 Query: 245 IV 246 ++ Sbjct: 209 LL 210 >gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 189 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDEKMRSCTAIKLTRRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 206 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 16/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + D +L + + G +LL P+ A +A Sbjct: 88 VLPAMRAGAAGFLYKDVDPEALVQAIRAVHEGQVLLAPE----------------AAEAV 131 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE E L I+ G+++ EIA L ++ TV ++++++ K + Sbjct: 132 LGGPAAPPGEPEIALTAREREVLRLIAAGRSNREIARELSVAEKTVKTHVSNVLMKLGVQ 191 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAVR +V Sbjct: 192 DRTQAALYAVRRGLV 206 >gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] Length = 215 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N +V Sbjct: 201 DRTQAALYAVKNGVV 215 >gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F+ + + A++ G+ + ++ + L+ Y + + Sbjct: 89 FNLDEYVYEALRAGASGFLLKDAPPAQLLDGIRTVAAGSALLAPEVTRR--LVGRYASRV 146 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE++ L ++EG ++ EIA L I+R TV Y++ I+ K + Sbjct: 147 APPEPAPA--DGPLTPRELDVLRLLAEGLSNAEIAAALVITRETVKTYVSRILTKLDLRD 204 Query: 233 RSGAIAYAVRNNIV 246 R A+ +A + +V Sbjct: 205 RVQAVVWAYQTGLV 218 >gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580] gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2] gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580] gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2] Length = 211 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 13/177 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCS 132 + P ++ + + D Q +L P V + ++ ++ S Sbjct: 41 ELALETKPDVILMDLVMEGMDGIEATKQICRQLADPKIIVLTSFVDDDKVYPVIEAGALS 100 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGR 189 ++ I + E L A + G+ LT R Sbjct: 101 YLLKTSKA-------SEIADAIRAASVGEPKLEAKVAGKVLSKLRHSAGEQPLHQSLTAR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L ++EGKT+ IA L I+ TV ++ +I+ K R+ A YA RN +V Sbjct: 154 ELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDDRTQAAIYAHRNKLV 210 >gi|121605575|ref|YP_982904.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120594544|gb|ABM37983.1| transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 29/207 (14%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK--------DKYYNVLQRPTELFCPVF 113 LL W FQE + + S P + + + ++P L F Sbjct: 48 LLAGWGNFQEGSIRHDIVSRLPGARSYAVGTDGLPFLLGKFHESWVLAGRQPNSLDFRNF 107 Query: 114 HTLPENITPPAGMD------------------NRYCSLTFDVARIRIGLMLLFPKGRIIL 155 L N + P +Y L ++ I ++++ Sbjct: 108 EYLLGNASLPDSFGSALRNMRSVLIHGMRDERGQYECLYVLLSVHEIPAESASGAIKVLM 167 Query: 156 R---DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 L ++ L Q KS V + F L+ RE++ + W++ GKT+ EI IL I Sbjct: 168 PFIDSALRQVAQLPQQQKPFAKSPRVVQEEIFGLSEREIQIMDWVAMGKTNSEIGSILNI 227 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239 S TV N++ I +K R+ A++ Sbjct: 228 SGFTVKNHMQRIFQKLNVFNRAQAVSK 254 >gi|315654640|ref|ZP_07907546.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] gi|315491104|gb|EFU80723.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] Length = 254 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 2/134 (1%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D + L + + G + P+ + + L Q Sbjct: 121 FAALRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMF--APQLPGEQDEA 178 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ V LT RE E LT I++G T+ EIA L IS TV ++ +I+ K + Sbjct: 179 EETNLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARD 238 Query: 233 RSGAIAYAVRNNIV 246 R A+ +A N +V Sbjct: 239 RVQAVIFAYENGLV 252 >gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 215 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA +L I+ TV +++SI+ K R+ A YAV+N I Sbjct: 155 LTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] Length = 207 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 13/171 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D + + ++E K + + L V I+ + Y Sbjct: 50 DIVLLDLVMPDMNGIEITEYLKKHYPNIKILVLTSYV--DDEHVISAIEKGADGYEMKDV 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + RII D ++ S +L+ RE E L Sbjct: 108 EPQKLIETIHNVLNGKRIIHPDA-----------KHVIDSMSSKPHFTNKLSKRETEVLK 156 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +GKT+ EIA L +S T+ +++ I K R+ A YA+ N ++ Sbjct: 157 EMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 215 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N +V Sbjct: 201 DRTQAALYAVKNGVV 215 >gi|89093728|ref|ZP_01166675.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082124|gb|EAR61349.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 303 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + E+T RE E L WI+ GKT+ EIA ILG+S TVN ++ + K + R+ A A+ Sbjct: 237 EKLEITERESEVLHWIANGKTNREIAEILGMSPRTVNKHLEQLFPKLGVENRTAAAGVAL 296 Query: 242 R 242 R Sbjct: 297 R 297 >gi|304390186|ref|ZP_07372140.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326668|gb|EFL93912.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 248 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 2/134 (1%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D + L + + G + P+ + + L Q Sbjct: 115 FAALRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMF--APQLPGEQDEA 172 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ V LT RE E LT I++G T+ EIA L IS TV ++ +I+ K + Sbjct: 173 EEANLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARD 232 Query: 233 RSGAIAYAVRNNIV 246 R A+ +A N +V Sbjct: 233 RVQAVIFAYENGLV 246 >gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 223 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 11/173 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + S +L+R + V + ++ ++ S Sbjct: 55 DVVLMDLVMEPIDGIETSR-----RILERLPDCKIIVLTSYVDDDKIYPALEAGAFSYLL 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVEC 193 +R + R ++ + +AA + D + +LT RE E Sbjct: 110 KTSRAA----EIAQAIRAAVQGQSVLEAQVAAKVMARVRRPDGQNERPLHEQLTDREREV 165 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++EG ++ E+A L I TV ++ +I+ K + R+ A+ YA ++ +V Sbjct: 166 LLLLAEGYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHGLV 218 >gi|241206011|ref|YP_002977107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859901|gb|ACS57568.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 305 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 4/108 (3%) Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 VA +R G++ + G+ L+ L IG L A +S D + F LT RE E Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQRSDDEVLRQRFSLTQRESE 250 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 251 VLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] Length = 215 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ EIA +L I+ TV +++SI+ K Sbjct: 141 VEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|116253485|ref|YP_769323.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258133|emb|CAK09234.1| putative LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 305 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 4/108 (3%) Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 VA +R G++ + G+ L+ L IG L A +S D + F LT RE E Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQRSDDEVLRQRFSLTQRESE 250 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 251 VLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 301 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S + F+LT RE + L WI+ GKT+ EI IL +S TVN ++ + RK + R Sbjct: 228 NSASAALRERFDLTLRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKMNVENR 287 Query: 234 SGAIAYAVR 242 + A A A+R Sbjct: 288 TAAAANAIR 296 >gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme [Oceanobacillus iheyensis HTE831] Length = 230 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + +L + + G L P+ + + + E LA ++ Sbjct: 95 VTHALKTGAQGYLLKEMDSDALIDAIKVVSDGGSYLHPR---VTHNLVKEYRRLAKENSS 151 Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + K L T RE + L +++GK++ +A L IS TV N++++I++K Sbjct: 152 SIADKGIEYRKPLHLLTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNV 211 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ A+R Sbjct: 212 NDRTQAVVSAIRKG 225 >gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] Length = 208 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136 P ++ + + E + + ++ + V + + + M + Y D Sbjct: 50 PELILVDLVMPEMNGITLIQKLKEQHAGIKILVLTSYVDEEHVMSAMQAGADGYEMKDVD 109 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + ++I +D A + + K L+ RE E L Sbjct: 110 PEALMTSIETVLQGDKVIHKD--------AQQVMDTVITKPHMLNK---LSKRETEVLKE 158 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++GKT+ EIA L +S T+ +++ I K R+ A YA+ N+++ Sbjct: 159 MAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLI 208 >gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 207 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 20/177 (11%) Query: 78 VSSDWPFDLVR-CMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMD---NR 129 +S + P D+V + + E + V + ++ V + ++ + ++ + Sbjct: 43 LSENQPPDIVLLDLVMPEMNG-IEVTEFLKKNYSDIKVLVLTSYVDDEHVISAINKGADG 101 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + A++ + + RII + + ++ +L+ R Sbjct: 102 YEMKDVEPAKLIETIRRVLVGERIIHPEA-----------KTVMEAVAKKPHYTNKLSKR 150 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E++ L + +GKT+ EIA L +S T+ +++ I K R+ A YA++NN++ Sbjct: 151 EIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207 >gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 248 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL +++ + ++ + LT Sbjct: 130 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 187 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 188 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 245 >gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2] gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 20/204 (9%) Query: 55 YVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQ----R 104 +G S +L + D+ + D + P ++ + + E D + Sbjct: 14 RIGVSSYLTAQPDIEVIGEADNGKTAIDLALELRPDIILMDLVMKEMDGIEATRRIIEQW 73 Query: 105 PTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P V L + PA Y T + I + + ++ + ++ Sbjct: 74 PEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSKASEIAEAVRSTYHGQSVLEPEVTGKM 133 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + H ELT RE+E L +++GKT+ +IA L I+ TV +++ Sbjct: 134 MV--------KMRQKNHQLPHEELTSREMEILLLMTQGKTNQDIADELFIALKTVKTHVS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I+ K + R+ A+ YA ++++V Sbjct: 186 NILSKLQVQDRTQAVIYAFKHSLV 209 >gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 225 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----F 184 C A + + +G + + L LA F+ + GKD Sbjct: 103 ACLKKSSTAEELVETIRRANRGEYPINESLMSSPNLAKQVLAQFQDVSM-LGKDASNFVT 161 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + LT I+ G T+ +IA L IS T+ N++++I+RK R+ A+ A+R Sbjct: 162 PLTNREKQILTLIANGNTNKQIANSLEISEQTIKNHVSAILRKLNANDRAHAVVVAIRCG 221 Query: 245 IV 246 ++ Sbjct: 222 LI 223 >gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] Length = 207 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 20/177 (11%) Query: 78 VSSDWPFDLVR-CMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMD---NR 129 +S + P D+V + + E + V + ++ V + ++ + ++ + Sbjct: 43 LSENQPPDIVLLDLVMPEMNG-IEVTEFLKKNYSDIKVLVLTSYVDDEHVISAINKGADG 101 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + A++ + + RII + + ++ +L+ R Sbjct: 102 YEMKDVEPAKLIETIRRVLAGERIIHPEA-----------KTVMEAVAKKPHYTNKLSKR 150 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E++ L + +GKT+ EIA L +S T+ +++ I K R+ A YA++NN++ Sbjct: 151 EIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207 >gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] Length = 210 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + + ++ + G +L P+ + +RL + + ++ Sbjct: 90 VYPALEAGASSYILKTSTASTIANAIRSTYKGETILEPEVTGKMMERLTKKHVHQLHE-- 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +LT RE E L I++G ++ EIA L I+ TV ++++I+ K + Sbjct: 148 -------------DLTNREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVE 194 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YA +++++ Sbjct: 195 DRTQAAIYAFKHHLI 209 >gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 246 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 23/247 (9%) Query: 19 RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLD-S 76 ++ + + + + + P V + A+ Y+ S+F++ D+ + KL Sbjct: 1 MSNQIPENEPQGEEIPPVSPRLLLVDDEPGLREAVQAYLEDSNFIV---DVAENAKLGWE 57 Query: 77 IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPEN-----ITPPAGMDN 128 ++ + P ++ + + E D Y + P PV + I + Sbjct: 58 LLQQNLPDLVITDIMMPEVDGYQFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCD 117 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------ 182 Y S FD + + L + ++ + A + + ++ GK Sbjct: 118 AYLSKPFDPEELVAIVKNLLERRAATRQEAEDGTPDITALAGQIARIENMLKGKTGINLS 177 Query: 183 ----DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + Sbjct: 178 PSPIKIDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVR 237 Query: 239 YAVRNNI 245 YA+ + + Sbjct: 238 YALEHGL 244 >gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 232 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + +L V + G + PK L + ++ + Sbjct: 95 VTHVLKTGASGYLLKEMDTEALIEAVKVVGEGGAYIHPKVTHNLINEYRKLANEDRLEPE 154 Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + +V + + L T RE E L +++GK++ I L IS TV N++++I++K Sbjct: 155 VGFR-EVEFRRPLHLLTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGM 213 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 214 NDRTQAVVDAIKNG 227 >gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 204 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 10/164 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141 D V + + + P V L ++ PA Y T + +I Sbjct: 47 MDNVMPIMTGAEATAEILAAWPEAKIMMVTSFLDDDKVYPALEAGAVSYILKTSNAKQIA 106 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + ++ + + + M + + +LT RE+E L +++GK Sbjct: 107 EAIRKTMGGETVLEPE------VTSKMMHRMRNGNNTPLYE--QLTDREMEVLLLMAQGK 158 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L I+ TV ++++I+ K + R+ A+ YA +N + Sbjct: 159 ANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 202 >gi|134094678|ref|YP_001099753.1| putative two-component response regulator protein [Herminiimonas arsenicoxydans] gi|133738581|emb|CAL61626.1| Two-component response regulator, LuxR family [Herminiimonas arsenicoxydans] Length = 315 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + EI LL + + + LT RE E L+W+++GKT+ +I IL +S TV+ Sbjct: 219 MDEIMLL--LELSSNRMLPTGRLASAALTPRETEVLSWLAKGKTNRDIGDILQLSPRTVS 276 Query: 219 NYIASIMRKTATKTRSGAIAYA 240 ++ I K +TRS A+A A Sbjct: 277 KHLEHIFEKLGVETRSAAVAMA 298 >gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] Length = 295 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 41/86 (47%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 +R E L + +T RE E L W+S GKTS EI++IL +S T Sbjct: 206 ERQQENMHLLRIVQKAPQKNPQDLKNKLPITKRESEVLYWVSYGKTSWEISLILEMSPRT 265 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVR 242 VN ++ I +K R+ A A ++R Sbjct: 266 VNKHLEQIYKKLGVDNRTSAAAISIR 291 >gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] Length = 244 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 25/230 (10%) Query: 21 SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT--EYVGASHFLLVRWDLFQEQKLDSIV 78 +F + + M + T + A T ++ +H+ + R + +D + Sbjct: 34 AFGALVSRLGPHAYSMGTIHKTDPLQRHLIATTYPDHW-MAHY-VARNYHHIDPVIDPLR 91 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P+D K ++ R + F + ++ +A Sbjct: 92 HGLHPYDW----------KDIHIENRRQDTMLREFGEMGFRSGH---------AVPLALA 132 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWG-KDFELTGREVECLTW 196 + L+ + I + I L A+ + + H G LT RE ECLTW Sbjct: 133 PGTLLLVSIASYDPHIDTRQQMAIQLAASQFHYRYHQLGRKHAGITGTGLTRRERECLTW 192 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++GK + +I IL +S NT+ ++ + +RK R A A ++ Sbjct: 193 VAQGKDTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKATCLGLI 242 >gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 9/176 (5%) Query: 77 IVSSDWPFDLVRCMALSEKDKYY-------NVLQRPTELFCPVFHTLPENITPPAGMDNR 129 I S P ++ + + D L+RP L F T I + Sbjct: 46 IAESQEPDVILMDIRMPVLDGIAATERVLQQALKRPRILLLTTFDTPELVIEGMRAGASG 105 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + + ++ LLA+ Q + + + LT R Sbjct: 106 YLLKDCSAEELCTAIRAVARGQILLQASS--AAQLLASLQTKPVAAAPLSVAEQLGLTTR 163 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E+E L ++ G+++ EIA L +S TV +I I K + RS AI A + + Sbjct: 164 ELEVLRLVTLGQSNTEIAAALFVSDATVKTHINHIFSKLGARNRSQAIIKARQLGL 219 >gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] Length = 234 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 17/181 (9%) Query: 81 DWPFDLVR----------CMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMD 127 DWP D + ++E + E + G Sbjct: 54 DWPPDWLELYVNRNFVAADYGVAEARRRIAPFTWREAKAERTLSRAEQDIWDTVVEWGWT 113 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + S+ ++ + K + + LR +L ++ L + Sbjct: 114 DG-LSVPIHGPGGYFAIVTMAGKEQPMPPALRGKLQQLAFLTHERCRALTGLAPVTDPQA 172 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+ECL W++ GKT +IA +LG+S+ T +I RK +TRS A+A V + Sbjct: 173 TLTHRELECLRWVAAGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSG 232 Query: 245 I 245 + Sbjct: 233 L 233 >gi|205375039|ref|ZP_03227830.1| DegU [Bacillus coahuilensis m4-4] Length = 225 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + +L V + G L PK + + + E L Q Sbjct: 90 VSHALQTGALGYLLKEMDADALVNAVKVVSEGGSYLHPK---VTHNLVREYRQLIKEQHQ 146 Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 V + L T RE E L +++G ++ I L IS TV N++++I++K Sbjct: 147 QTVYQPVEIRRPLHLLTRRECEVLQLLADGCSNRTIGETLYISEKTVKNHVSNILQKMNV 206 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ A++ Sbjct: 207 NDRTQAVVTAIKKG 220 >gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 5/174 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ + + + + P L F+ + + Sbjct: 55 DVVVMDIRMPLLDGIQATRQLAGPDTEDAPKVLVVTTFNVDAYVYDALRAGASGFLLKDA 114 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192 A + G+ + ++ L+ + ++ + + L RE+E Sbjct: 115 PPAELVNGIRTVARGEALLAPAVTRH--LIGHFAQHLRPADTSRPARQDVVRALAPRELE 172 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+EG ++ EIA + I+ TV Y++ I+ K + R A+ A R +V Sbjct: 173 VLQLIAEGLSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAYRVGLV 226 >gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia ubonensis Bu] Length = 222 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LA A E LT RE+E LT ++EG + EIA L IS NTV +++S Sbjct: 138 LARLLAEHKAPRQTASAALVEMLTPREIEVLTMLAEGLGNKEIARQLDISDNTVKFHLSS 197 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+ +R+ +V Sbjct: 198 IFGKLGASSRTEAVMQGMRHGLV 220 >gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1] gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1] Length = 216 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + Y ++ + +F +I + LL +Q N + D D L Sbjct: 98 ADGYLLKDAPSEQVVEAVRTVFSGESVIHPSLTRK--LLTFHQQNQRQDRD-----DNSL 150 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L + EG ++ EI L +S TV ++++I +K K+RS + YAV+N +V Sbjct: 151 TEREREVLGCLVEGLSNKEIGKRLYVSDKTVKIHVSNIFKKLNVKSRSQVVIYAVQNKLV 210 >gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] Length = 215 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 42/85 (49%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + ++ ELT RE+E L I++GK++ EIA L I+ TV + Sbjct: 127 HPKATSHLLTHLTNKNSTERQPLEELTKRELEVLREIAKGKSNKEIASSLYITEKTVKTH 186 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 +++++ K R+ A YAVR+ I Sbjct: 187 VSNLLSKLELADRTQAALYAVRHGI 211 >gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676] gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676] Length = 214 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 50/139 (35%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + F + Y + + + + I + Sbjct: 75 VLLTTFDVQQYVLDGIRAGAVGYILKDTETEEMLDSIRAMNRGAMIYNSTTANQAFTHFI 134 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Q N + D LT RE++ L ++ GK + EIA IL +S TV +I +I++K Sbjct: 135 KQENDYNLADEELEYKEALTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQK 194 Query: 228 TATKTRSGAIAYAVRNNIV 246 R+ A A+R IV Sbjct: 195 LDVTDRTQAAVMAIRKKIV 213 >gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 10/181 (5%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 V Q++ +IV S P M LSE + + E V +T Sbjct: 44 VDLPPHQDEHYVAIVDSSLPDLSEVKMTLSELEHVDATILVNAEPNLGV----ESLLTWS 99 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGK 182 Y FD ++ GL + + RD L L Y N+ + ++ Sbjct: 100 NLKGLFYFEDDFD--KVIRGLKGILSGENWLSRDILNR---LVGYLVNLNHTVTELDTKL 154 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ LT + +G ++ +IA L +S +TV +++ SI RK K R A+A+A R Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 213 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 16/170 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + L++ EL P F + Y Sbjct: 51 PDVVLMDVKMPGMDG-IDALRKLRELNNPARVLIVTSFTEQRTMVPALRAGAAGYVYKDI 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + G+L + + N + G+ LT RE E L Sbjct: 110 DPDALAGAIRSVHAGHILLQPEV---AGVLLSQEEN-----NSGQGRGGSLTEREREVLG 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211 >gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 214 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D L+R EL P F I + Y Sbjct: 52 PDIVLMDVKMPGTDG-IEALRRLRELANPARVLVVTSFTEQRTVIPALRAGASGYVYKDI 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + LLA + G+ LT RE E L Sbjct: 111 DPEALAGAIRSVHAGHVLLQPE--VAGALLAQ------EEQGGGTGRGSTLTEREREVLG 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212 >gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 305 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 + L A S D + F LT RE E L WI++GK++ +I ILG+S TV Sbjct: 216 AIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTV 275 Query: 218 NNYIASIMRKTATKTRSGAIAYAVR--NNI 245 ++ I K + R+ A A + + I Sbjct: 276 TKHLEQIYVKLGVENRASAAVKATQVLHGI 305 >gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Burkholderia oklahomensis EO147] Length = 236 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 17/232 (7%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 +DLL + + + T +G +F K ++ S++P Sbjct: 6 TDLLLSITQKSTSSEIFSSLEKYTRELGFDNFSYGFCHPIPFTKPRIVILSNYPERWRGR 65 Query: 90 MALSEKDKYYNVLQRPTELFCPVF-HTLPENITP-------PAGMDNRYCSLTFDVARIR 141 + + P LP + G+ + D Sbjct: 66 YSELGYVNIDPTVLHGRNSQSPFTWSELPTSDVRSFWDEANAHGLVVGWAKSILDSD-GG 124 Query: 142 IGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECL 194 +G++ L + L L L + ++ D +L+ REVE L Sbjct: 125 LGMLTLARSNEELCGKELAAKNLRMCLLADLTHMVLSDAYRKEMTASAD-KLSAREVEIL 183 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W ++GKT+DEI IL IS +TV + + + K ++ A+A A ++ Sbjct: 184 RWHADGKTADEIGRILSISIDTVKFHTKNAVVKLGASNKTAAVARAAIMGLL 235 >gi|145860182|dbj|BAF57040.1| DNA-binding response regulator [Streptococcus bovis] Length = 214 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + + L E K D +V DLV +S + +L+ E V Sbjct: 30 VEVVGEAGNGIEGIKLALELKPDVVV-----MDLVMP-EMSGVEATLKLLKEWKEAKILV 83 Query: 113 FHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 + +N Y T A I + + I + Sbjct: 84 LTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------V 132 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 K++D +LT RE + L +++G + IA L IS TV ++++I+ K Sbjct: 133 DKKIKAHDKQPELHEDLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLE 192 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A+ YA ++++V Sbjct: 193 VDDRTQAVVYAFKHHLV 209 >gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 228 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + R L V + G L P +A Sbjct: 102 VFALLEAGAAGYLLKNAREDELLGAVRAVAAGESALHPS--------------VARKVLE 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F + + L+ RE+E L + G+T+ EIA L IS TV ++A+I K Sbjct: 148 RFSTNQTPSPPEETLSPRELEVLRIAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 207 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ Y ++ + Sbjct: 208 SRTEAVLYGIKRGWI 222 >gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] Length = 224 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220 >gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 224 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220 >gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 224 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220 >gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 224 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220 >gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 207 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 18/185 (9%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITP 122 + +++ + S P ++ + + VL+R L P VF + Sbjct: 34 EAGDGEEVLRLASGLRPDVVLLDLEMPGTGG-VEVLRRLRGLDDPPKVVVFTAYDDERLL 92 Query: 123 PAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 A + R C L + G ++ + A + K G Sbjct: 93 EALREGARGCLLKGASRTEIFDAVRTVHAGGSVIPPEI---------TARVLKEM---RG 140 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE+E L ++ G T+ E+A L IS TV +++S++ K + R+ A+A A Sbjct: 141 ESEPLTPRELEVLRLVARGLTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIAR 200 Query: 242 RNNIV 246 ++ Sbjct: 201 ERGLL 205 >gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 214 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 13/155 (8%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152 E K L P ++ T + P Y D + + + Sbjct: 68 EALKRLRALDNPAKVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHV 127 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ + + D H G + LT RE E L I++G+++ EIA L Sbjct: 128 LLQPE----------VAGALLAQEDSHGGTGRGSTLTEREREVLGLIADGRSNREIARAL 177 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S TV ++++I+ K R+ A +AVR+ + Sbjct: 178 VLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212 >gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 217 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F P G ++ L + + + I L+ A Sbjct: 86 FGLGEGLGIPVHGAYGSLAMISMVAEEETRRLARMLHHHG----EDVHLISLIFHNLARE 141 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L+ RE ECL W++ GKT EI++ILGIS TV + +I K T + Sbjct: 142 LMALGRCGRSPISLSPRERECLIWLANGKTRWEISLILGISEETVKYHFKNIRAKFGTYS 201 Query: 233 RSGAIAYAVRNNIV 246 R I AVR ++ Sbjct: 202 RHEIIIQAVRLGLI 215 >gi|86358918|ref|YP_470810.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86283020|gb|ABC92083.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 305 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Query: 140 IRIGLMLLFPKGRIILR-DRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 R G++ + G+ L+ L IG L A +S D + F LT RE E L Sbjct: 194 GRDGIISITHAGQAALQLAFLGSIGPDEYLFRLTAASQRSDDEMLRQRFALTQRESEVLL 253 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 254 WIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 201 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 164 LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ Q + + H +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ Sbjct: 116 LISIVQTRLARRPRTHTAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K TR A+ A + I+ Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199 >gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 228 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 50/133 (37%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + L V + G + P+ I L + Q Sbjct: 91 VTEALRAGAVGYLLKEMDAQELVEAVKIVENGGAYIHPRVAIKLIREYRHLASTNTSQGV 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A+++ Sbjct: 211 DRTQAVVTAIKHG 223 >gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 292 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 23/240 (9%) Query: 6 QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65 Q V ++L +D + ++H R+ L S L +LV Sbjct: 75 QPVRVLLVDDDPHMSRVIAHELLGD---LRINLLGQGCSVREG-RRLISQNEFD-VMLVD 129 Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125 +L F+L+ M V+ E H T Sbjct: 130 LNLGDGSG----------FELIEYMKAVRPMAEAVVISS-MEDAQHALHAFELGATGYLV 178 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 ++ + + + ++ G + P L + QAN+ + V+ GKD + Sbjct: 179 KNSWFGNFPQAILQVVNGGASITPNLARRLLSKFEPP------QANV-EPLPVNQGKDNK 231 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++ G +S EI L IS T N +I +I RK + R+ A+++A + + Sbjct: 232 LSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAVSFAANHGL 291 >gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 201 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 164 LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ Q + + H +L+ REVE L W + GKTS EIA ILG+S+ TV+ ++ Sbjct: 116 LMSIVQTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K TR A+ A + I+ Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199 >gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 219 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 3/144 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 RP L F A + + ++ G+ ++ ++ Sbjct: 72 PRPRVLVLTTFDVDKVVEDALAAGADGFLLKRATPEQLIDGIRVVAGGDALVAPAVTRR- 130 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL ++ D +LT RE E L ++EG+++ EIA +L +S TV ++ Sbjct: 131 -LLVTLARRRVPDRELLTRAD-QLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVK 188 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R+ A+ +A R V Sbjct: 189 RILSKLGVRDRTQAVVWAYRAGFV 212 >gi|325293769|ref|YP_004279633.1| two-component response regulator protein [Agrobacterium sp. H13-3] gi|325061622|gb|ADY65313.1| putative two-component response regulator protein [Agrobacterium sp. H13-3] Length = 309 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF 173 + + + + + V R + + GR L+ + L A Sbjct: 176 DGLEIVVAHISGWLADRTTVDSARDAPLTITEAGRPALQLSFLGAMGPDEYLFRLTAANE 235 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 KS D F LT RE E L WI++GK++ +I ILG+S TVN ++ I K + R Sbjct: 236 KSDDHLLKDHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENR 295 Query: 234 SGAIAYAVR 242 + A A Sbjct: 296 ASAAVKAAH 304 >gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 242 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + T + L V + G + P + + E LA Sbjct: 101 FEAIKAGATGYLLKEISVVELPEAVRAVCKGQSFINPS---MATKLINEFAALA----RK 153 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K K LT RE E L ++ G + +IA L IS NTV N++ +I+ K + Sbjct: 154 GKDRRSQPTKPPRLTERETEVLRLVARGLNNRDIADRLYISDNTVKNHVRNILEKLQLHS 213 Query: 233 RSGAIAYAVRNNIV 246 R+ A YA+R + Sbjct: 214 RTEAAVYAIREKFL 227 >gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 1/135 (0%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRI-GLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 H L +R + + +L+ L L A Sbjct: 89 MHADDPEFLLACLQTGMVTCLPLHASRTTLHQALTASVHKETLLQHALVRSLLERIEGAT 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +LT RE+E LT ++ G+ + EIA L IS TV ++A+I K Sbjct: 149 PVEERSSAQAQRVDLTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVD 208 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+A A++ ++ Sbjct: 209 SRASAVAVAMKRGLL 223 >gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385] gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385] Length = 224 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E L W+ GK++ EI+ +L IS TV ++ +I RK T R+ AIA A+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220 >gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 254 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 7/146 (4%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + V+ + + + Y S + A + L + +I L + + Sbjct: 88 VVLSVYESDEQAFNALRAGASAYRSKDVNPAELAQVLRRVARGEYVINDVVLDDPKVAGR 147 Query: 168 YQA-------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + ++ +V + L+ RE+E L I+ G ++ EIA L IS TV N+ Sbjct: 148 VLSQFRNLPQDLTNLPEVEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNH 207 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 I+SI+RK + R+ A+ YA+R + Sbjct: 208 ISSILRKLSLNDRTQAVLYALRRGWI 233 >gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 307 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGL---LAAYQANMF 173 + + + S + R L+ + G+ L+ L IG L A Sbjct: 174 DGLELVVKHIATFMSERARLGPARDNLVSISNGGQAALQFSFLGAIGADEYLFRLTATNQ 233 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ D + F LT RE E L WI++GK++ +I ILG+S TVN ++ I K + R Sbjct: 234 RADDGVLRQHFSLTQRESEVLLWIAKGKSNRDIGEILGLSARTVNKHLEQIYVKLGVENR 293 Query: 234 SGAIAYAVR 242 + A A Sbjct: 294 ASAAVKAAH 302 >gi|269795278|ref|YP_003314733.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097463|gb|ACZ21899.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 216 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 61/171 (35%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + + L+ L F P+ + + + S Sbjct: 46 DVVLMDLRMPVLDGIEAIRRLRSMPDLESLRILVLTTFDDDPDVLAALQAGADGFLSKVA 105 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + + ++ + + A + V + LT RE + Sbjct: 106 EPAELVDAVRGVAAGDVMLSQTATRAVVQHVARAPRPAEPDPVLAQQVASLTPRERTIVK 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + +I+ L IS +TV ++ M K + R+ + A R +V Sbjct: 166 QAAQGLDNLQISRQLHISPHTVKTHLGHAMAKLDVRDRTQMVVVAFRAGLV 216 >gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 233 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 24/216 (11%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 ++ Y+ S F + QE ++ + P L+ + + + D Y V + Sbjct: 20 SVQAYLEDSDFEVRVASNAQEGW--ELLQQEIPNVLISDIMMPQVDGYQFLKQVREDARF 77 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----- 157 PV + I + Y FD + + L + D Sbjct: 78 QALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTSLIERRAAQAPDASATP 137 Query: 158 -------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ EI L + +M K + G + T RE + L ++EG + EIA L Sbjct: 138 DIATMARQIEEIKALLTQRGSMIKQNNS--GIKIDFTPREQDVLNLVAEGLMNKEIASRL 195 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G + V Y++ + KT T +R+ + YA+ N +V Sbjct: 196 GTTVRNVEKYVSRLFGKTGTNSRTELVRYALENGLV 231 >gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] Length = 224 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 15/209 (7%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTE 107 ++ +Y+ + ++ ++ +V P +V + + E D Y V + RP Sbjct: 17 SIGDYLEICGYSVITAQNGKQAL--GLVEEYQPHLIVTDVTMPEMDGYEFVRRVRLRPAF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV E I + Y F++ + + L + +I + Sbjct: 75 RLLPVIFLTERTSTQERIRGYQLGADNYLRKPFELEELGAVIRSLLDRYALIAQAGGQGS 134 Query: 163 GLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 G + D LT RE + L +++G ++ +I L +S TV Sbjct: 135 GGAGERGSEGAGERGGGGDSDITEKSLSLTQREKDVLQLLTDGLSNAQIGDRLHLSHRTV 194 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++RK+ R+ + +A+ +++V Sbjct: 195 EKYVSSLLRKSDRTNRAELVRFAMEHHLV 223 >gi|256397512|ref|YP_003119076.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363738|gb|ACU77235.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 239 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 2/144 (1%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 +RP L F T + + + + + ++ Sbjct: 93 ERPRVLMLTTFDLDEYAFTALKAGASGFLLKDVPPPDLLAAIRAVHSGEAVVAPSTTRR- 151 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL + + + + LT RE E L +++G ++ EIA L +S TV ++ Sbjct: 152 -LLDKFAPMLPSESEPAPPELTVLTDREHEVLLLVAQGMSNAEIAGKLFLSEATVKTHVG 210 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ A +V Sbjct: 211 RILMKLGLRDRVQAVVLAYETGLV 234 >gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78] gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78] gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 226 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + +R + + ++ TE V L D +L + + G Sbjct: 80 EALRTLRALGNEVRVLIVTSFTEQRT-VVPALRAGAAGYVYKDIDPEALAGAIRSVHAGH 138 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LL P+ G+L A + + + LT RE E L I++G+++ Sbjct: 139 VLLQPEV----------AGMLLAQEEQAPQQP-----RGGSLTEREREVLGLIADGRSNR 183 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 184 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 223 >gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] Length = 219 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 10/161 (6%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143 ++ + + V + + + + + Y + Sbjct: 59 IQMPGMGGLEATKRVKDKFPYVKIVMVTVSDDIAHLFDALKRGAQGYLLKNLNPESWHEY 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L + + R+ LA F YD LT RE E L ++EG ++ Sbjct: 119 LKAIAVDEAPVSRE-------LAFRILKEFSQYDKPDPSKSPLTAREKEILGLVAEGLSN 171 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +I+ L IS NTV N++ +I++K + R YA Sbjct: 172 RDISSDLCISENTVKNHLKNILQKLHLENRVQLTRYAFEQG 212 >gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 220 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + L + D ++ + + G +L +L +I L +++ Sbjct: 89 IIKVLENGVHGYLLKDMPSEAIIGAIRTVYNGGTVLQHDITSMLIKEFVKITDLNPDKSH 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + K +LT RE E L + +G + EIA L ++ TV N++++++ K + Sbjct: 149 PLGAQEPAELK--QLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLR 206 Query: 232 TRSGAIAYAVRN 243 R+ A YAVR+ Sbjct: 207 DRTQAAIYAVRH 218 >gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 82 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N S LT RE + L W + GK+S EI IL +TVN ++++I+RK Sbjct: 4 NARYSQQPPADAPVRLTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDV 63 Query: 231 KTRSGAIAYAVRNNIV 246 TR A+ A+R ++ Sbjct: 64 PTRVVAVIKAIRYGLL 79 >gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 246 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 165 LAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +AA N F+ V L+ RE++ L ++ G T+ IA L IS TV N+I Sbjct: 152 VAAQVLNAFRQMAVDEETQNVYSPLSPRELQVLELVAAGHTNKAIAQSLDISNQTVKNHI 211 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +SI+RK A R+ A+ YA+R + Sbjct: 212 SSILRKLAVNDRTQAVVYAMRRGWI 236 >gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2] gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2] Length = 209 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 21/203 (10%) Query: 55 YVGASHFLLVRWDL--FQEQKLDSI----VSSDWPFDLVRCMALSEKDK----YYNVLQR 104 +G S +L ++ D+ E + I S P ++ + + E D + Sbjct: 14 RLGVSSYLSIQEDIEVIGEAENGKIGYEKALSLRPDVILMDLVMDEMDGIEATKAILADW 73 Query: 105 PTELFCPVFHTLPENITPPA--GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P V + + PA Y T I + R++ + ++ Sbjct: 74 PEAKIIIVTSFIDDEKVYPAIEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKM 133 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 M + + +LT RE E L I+EGK++ EIA L I+ TV +++ Sbjct: 134 ---------MDRLTNRTPILHDDLTNREKEVLLLIAEGKSNQEIADELFITLKTVKTHVS 184 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +I+ K + R+ A YA ++ + Sbjct: 185 NILSKLEVEDRTQATIYAFKHGL 207 >gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 188 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 116 LPENITPPAGMDNRYCSL--TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQA 170 PE PP G++ L + + G + F + + + + +A+ A Sbjct: 51 APEGGHPP-GVEQGLIILGDRLEADLLGSGHPVGFLPRDASVEEVIAAVRAVASGLSVVA 109 Query: 171 NMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + V ++ LT REVE L +++G + IA LGIS +TV ++ SI+ K Sbjct: 110 PTLAARIVRREPEEVPLTQREVEVLALMADGLPNKAIAARLGISEHTVKFHVGSILAKLG 169 Query: 230 TKTRSGAIAYAVRNNIV 246 +R+ A+A A R ++ Sbjct: 170 ASSRAEAVAIAARKGLL 186 >gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 213 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 16/169 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + L+R EL P F + Y Sbjct: 51 PDVVLMDVKMPGMDG-IDALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + LL+ +AN + G+ LT RE E L Sbjct: 110 DPDALAGAIRSVHAGHILLQPE--VAGALLSQEEANSGQ------GRGGSLTEREREVLG 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|290581010|ref|YP_003485402.1| putative response regulator [Streptococcus mutans NN2025] gi|254997909|dbj|BAH88510.1| putative response regulator [Streptococcus mutans NN2025] Length = 213 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 10/177 (5%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 Q +D + P +V + + E D L+ + L + +DN Sbjct: 40 QGID-LALKLKPDVVVMDLVMPEMDGVEATLELLKDWKEAKILVLT------SYLDNEKI 92 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGR 189 + + ++ I+ + G LA K D H D LT R Sbjct: 93 YPVIEAG-AKGYMLKTSSAAEILNAIQKVAKGDLAIETEVDKKIKDHHNNPDLHEDLTAR 151 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + L +++G + IA L IS TV ++++I+ K R+ A+ YA ++++V Sbjct: 152 ERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHHLV 208 >gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 240 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 11/169 (6%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--TLPENITPPAGM-DNRYCSLTFDV 137 D + L P H L I+ P D +F Sbjct: 78 DPVHRAAFIYNSPYRWSDIPGLSEPERRVLGEAHDAGLTHGISIPIYEPDGSVLLFSFSG 137 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R+ L + ++ LL + L+ R+ ECL W+ Sbjct: 138 PPHRVNTALNVRRAQL--------ASLLFHAEFQRLAPIPHVEPPTLRLSPRQQECLYWV 189 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GKTS EI +I+GIS +TV+ +++ M+ +R+ A +A ++ Sbjct: 190 GQGKTSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFASTYGLI 238 >gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 234 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + T D + + V + G L+ P + + E L+ +A Sbjct: 106 FEAIKAGATGYLLKDVQIDEVPDAVRGVYEGQSLINP---AMAAKLISEFQTLSRREAER 162 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE+E L +++G + EIA L IS NTV N++ +I+ K + Sbjct: 163 PPQVPAPR-----LTEREMEVLRLVAKGMHNREIAKALFISENTVKNHVRNILDKLQLHS 217 Query: 233 RSGAIAYAVRNNIV 246 R A+ YAVR ++ Sbjct: 218 RMEAVVYAVRERLL 231 >gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803] gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803] Length = 221 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 5/164 (3%) Query: 87 VRCMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 ++ +S + N++ + + F + Y + + G Sbjct: 58 IQMPDISGIEATKNIMDKLPNTKVVLLTTFDVQQYVLDGIRAGAVGYILKDTETEEMLDG 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + + I + + D + E LT RE++ L ++ GK Sbjct: 118 IRAMNRGAMIYNSTTANH-AFAQFLKYDNVPEEDSTANEYAEALTKREIDVLQLLAYGKQ 176 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA IL +S TV +I I++K R+ A A+R IV Sbjct: 177 NHEIAKILCVSEGTVKTHIHKILQKLEVTDRTQAAVMAIRQKIV 220 >gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 82 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 40/77 (51%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 AN + D LT RE + L W + GK+S EI IL +TVN ++ +I+RK Sbjct: 3 ANTQQIEDSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKFD 62 Query: 230 TKTRSGAIAYAVRNNIV 246 TR A+ A+R ++ Sbjct: 63 VSTRVAAVIKAIRYGML 79 >gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 247 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 26/240 (10%) Query: 19 RTSFVSHLPTRSDLLARMIPLD---------CTVSWTMRMYALTEYVGASHFLLVR--WD 67 R + + L TR + R I + ++ + G S + R D Sbjct: 21 RAAQAAGLVTRLQAMQRQINARNFAVLRTNGRGLPAARKLTCVLHNWGTSCEEIARDLID 80 Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + E+ L + S P D T F P L + P +G Sbjct: 81 HYGEELLQHLDHSLLPVLW---------DGKGEHQTAETSDFGPFTRRLKDRKLPYSG-- 129 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186 +L + G ++ +++ E+ G A ++ + K L Sbjct: 130 ---IALPIRLGAQGNGYVVFAGSYIDASGEQIVELHGRSAQIMTDLLTFDEKRPLKAEAL 186 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+ CL +G S+EIA +G+S +TVN Y+ + K + R AIA A+R + Sbjct: 187 SDREISCLQMAGDGHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 246 >gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] Length = 228 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 51/133 (38%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + L V + G + P+ I L + A Q Sbjct: 91 VTEALRSGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNAAQGV 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A+++ Sbjct: 211 DRTQAVVTAIKHG 223 >gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 72/231 (31%), Gaps = 13/231 (5%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R LLA M + + +G + V + S+ +++P Sbjct: 5 RESLLASMEQAETASDAFDGLAPAVRALGFEYHAYVLRVTIPITRPASMEWNNFPQAWRA 64 Query: 89 CMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 A VL RP P+ S T R + Sbjct: 65 HYAQKRYQHADPVLHYGQACTRPMPWPGPLAGHDAFWRDAADFGLRHGWSQTLRDHRGAM 124 Query: 143 GLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195 G L G I + L L A M DV L+ RE E L Sbjct: 125 GTFSLVRGGPPISPEELRRTEPEMIWLCQFVHATMSNLIVSDVMPSGAMRLSLREKEVLH 184 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKT+ E+A IL ++ V +I + M K ++ A A ++ Sbjct: 185 WTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAAMLGLI 235 >gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74] gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74] Length = 264 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + + + I LL+ +++ + ++ + LT Sbjct: 146 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLSEFKSMIQRTDERRLVPAPRLTD 203 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE++ L ++ G + +IA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 204 REMDVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261 >gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius ED99] Length = 208 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136 P ++ + + E + + ++ T + V + + + M + Y D Sbjct: 50 PELILVDLVMPEMNGITLIQKLKEQHTGIKILVLTSYVDEEHVMSAMQAGADGYEMKDVD 109 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + ++I +D A + + K L+ RE E L Sbjct: 110 PEALMTSIETVLQGDKVIHKD--------AQQVMDTVITKPHMLNK---LSKRETEVLKE 158 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++GKT+ EIA L +S T+ +++ I K R+ A YA+ N++V Sbjct: 159 MAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLV 208 >gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 221 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELT 187 Y + + + R RL GL + + + ++ L+ Sbjct: 103 YPIFDEAGRVEYVLKIGFDVTDDRVSRRRLERYVEGLERSLRGRPALAAPPAEAEESGLS 162 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 GRE+E L ++ G T++EIA L IS +TV ++ +I K R+ A A R + Sbjct: 163 GREMEVLRLVASGMTNNEIARALCISPHTVKTHVGNIFNKLGVNDRAMAAVTAARMGL 220 >gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] Length = 213 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 16/170 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + L+R EL P F + Y Sbjct: 51 PDVILMDVKMPGMDG-VDALRRLRELDNPARVLVVTSFTEQRTVVPALRAGAAGYVYKDV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + LL+ +AN + + LT RE E L Sbjct: 110 DPDALAGAIRSVHAGHILLQPE--VADALLSQEEANSGPA------RAGSLTDREREVLG 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGV 211 >gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 508 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ++ RE E L ++ G T+ +IAV L IS NTV ++ +I K ++R+ A YA+ Sbjct: 3 NESPISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYAI 62 Query: 242 RNNIV 246 R IV Sbjct: 63 RTGIV 67 >gi|24378972|ref|NP_720927.1| putative response regulator [Streptococcus mutans UA159] gi|24376861|gb|AAN58233.1|AE014894_10 putative response regulator [Streptococcus mutans UA159] Length = 215 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 10/177 (5%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 Q +D + P +V + + E D L+ + L + +DN Sbjct: 42 QGID-LALKLKPDVVVMDLVMPEMDGVEATLELLKDWKEAKILVLT------SYLDNEKI 94 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGR 189 + + ++ I+ + G LA K D H D LT R Sbjct: 95 YPVIEAG-AKGYMLKTSSAAEILNAIQKVAKGDLAIETEVDKKIKDHHNNPDLHEDLTAR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + L +++G + IA L IS TV ++++I+ K R+ A+ YA ++++V Sbjct: 154 ERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHHLV 210 >gi|331657961|ref|ZP_08358923.1| regulatory protein SdiA [Escherichia coli TA206] gi|331056209|gb|EGI28218.1| regulatory protein SdiA [Escherichia coli TA206] Length = 87 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 42/80 (52%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + A M + ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ + Sbjct: 8 SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQK 67 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K ++ YA ++ Sbjct: 68 KINAPNKTQVACYAAATGLI 87 >gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 16/169 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + L++ EL P F + + Y Sbjct: 52 PDVVLMDVKMPGMDG-IDALRKLRELANPAKVLVVTSFTEQRTVVPALRAGASGYVYKDV 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ ++ +A + + G+ LT RE E L Sbjct: 111 DPDALAGAIRSVHAGHVLLQQE-------IAGALLSDGDPGN-GTGRGNSLTEREREVLG 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHG 211 >gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 4/160 (2%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 VR + +L R + +F + + L Sbjct: 55 VRLPETDGLEALERILDRSPQTKVVMFTAYDNPTYIARAVALGAAGFLMKGSTKADVLSA 114 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + + + +G + A +YD ++ LT REV+ L ++ G ++ EI Sbjct: 115 ITRAHTGLPPENESLMGRVRNTMARRRPTYD----EEIPLTNREVQVLRHVALGLSNREI 170 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV ++ +I+RK R+ A +AV+ +V Sbjct: 171 GRSLDISIETVKEHVQNILRKLEAGDRTEAAVWAVKKGLV 210 >gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 222 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +S GK++ EIA L IS TV N++ I K R+ A YA+++ Sbjct: 155 IPLTAREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAALYALKH 214 Query: 244 NI 245 + Sbjct: 215 GL 216 >gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 309 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF 173 + + + + V R + + GR L+ + L A Sbjct: 176 DGLEIVVAHISGWLKERATVDAARDAPLTITEAGRPALQLSFLGAMGPDEYLFRLTAANE 235 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 KS D F LT RE E L WI++GK++ +I ILG+S TVN ++ I K + R Sbjct: 236 KSDDHLLKSHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENR 295 Query: 234 SGAIAYAVR 242 + A A Sbjct: 296 ASAAVKAAH 304 >gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 10/188 (5%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITP-- 122 ++ +V+ P ++ + + D + E V T ++ + Sbjct: 29 AGDGEEALRLVAELAPDVVLMDLRMPRCDGVEATRRVCAEHPGTQVVVLTTYADDDSLFP 88 Query: 123 -PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDV 178 Y + D I + + + RL E + Sbjct: 89 ALRAGARGYLTKDADADEILRAVEGVMSGDAGLSPQVQRRLLEWLAERGGSDRDEPERET 148 Query: 179 HWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G LT RE E L ++ G ++ EIA L I+ TV +I ++ KTA + R+ A+ Sbjct: 149 AAGPLPDGLTPREAEVLALVAGGLSNPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAV 208 Query: 238 AYAVRNNI 245 YA R+ I Sbjct: 209 RYAYRHGI 216 >gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] Length = 232 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +EGKT+ E ++IL IS TV +I + ++K T ++ A+ AV + Sbjct: 171 LTPREIEILKWSAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAVTLGL 230 Query: 246 V 246 V Sbjct: 231 V 231 >gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 199 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 80/205 (39%), Gaps = 24/205 (11%) Query: 55 YVGASHFLLVRWDL--------FQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQ 103 +G S +L V+ DL QE ++ P ++ + + E D +L+ Sbjct: 3 RLGISTYLGVQDDLEVVDQAVNGQEGVEKALALR--PDAILMDLVMPEMDGIEATKTILK 60 Query: 104 RPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 + + + ++ ++ Y T I + ++ + Sbjct: 61 AWPQAKIIILTSFIDDEKVYPAIEAGAASYILKTSTAGEIANTIRKTTAGQSVLEPEVTN 120 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 ++ M + +D LT RE E L +++G+++ EIA L I+ TV + Sbjct: 121 KM------MNRMTHQAETKLYED--LTNREREVLGLVAKGRSNQEIADELFITLKTVKTH 172 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 +++I+ K R+ A YA+++ + Sbjct: 173 VSNILAKLQVDDRTQAAIYAIKHQL 197 >gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771] Length = 253 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 11/152 (7%) Query: 96 DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 D Y +R F P G D + +F + R I Sbjct: 110 DVYTTEGERRIFDEAAAFGLRSGITVPLHGPDGSFAITSFAQHSSG------QFQNRAIS 163 Query: 156 RDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +L + + + + K D + + L+GRE EC+ W++ GK+S +I ILGIS+ Sbjct: 164 YLQLAALH----FHSRVGKFADSNCIDEGAVLSGRERECIAWVARGKSSSDIGTILGISK 219 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 NTV+ +I ++MRK T +R+ A A I+ Sbjct: 220 NTVDFHIKNVMRKLDTASRTVAAITAATLGII 251 >gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 254 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S T+ ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATITLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 229 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%) Query: 78 VSSDWPFDLVRCM------ALSEKDKYYNVLQRPTELFCPVFHTLPENI--TPPAGMDNR 129 + +++P + + K+ Q P F P+ G+ + Sbjct: 46 MLNNYPEAWQKRYQEARYVDIDPTVKHARRSQAPLVWSDACFAATPQLWCEAQAHGLRHG 105 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDF 184 + FD G++ L I L + L++ M D Sbjct: 106 WTQSAFDSC-GVSGMLTLARSNGPITPAELEQNEFKMRWLVSTAHLAMTGKLLPKLAPDT 164 Query: 185 E--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 E LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K ++ A+ A Sbjct: 165 ERGLTDREVEVLKWAADGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRATM 224 Query: 243 NNIV 246 ++ Sbjct: 225 LGLL 228 >gi|298247008|ref|ZP_06970813.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549667|gb|EFH83533.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 644 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 43/78 (55%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q +L+ REVE L ++ GK++ +I IL IS TV N+IASI KT Sbjct: 566 QVRRRARKPARSRLPLDLSEREVEVLRLVATGKSNRQIGEILVISERTVINHIASIFNKT 625 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+GA A+A+R+ +V Sbjct: 626 GVSNRAGATAFAIRHKLV 643 >gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1] Length = 251 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +R+ E GL Sbjct: 110 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLT 169 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + S D + ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 170 IPASADTAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHI 229 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 230 LSKINARDRVQAVVFAYENHLV 251 >gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 11/220 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + L E + ++ D L ++ D P ++ + + Sbjct: 1 MIRLLVVDDQTLVRQGIRGLLE-LAPDVDVVAEAD-DGLAGLAAVREHD-PDVVLLDLRM 57 Query: 93 SEKDK-YYNVLQRPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 D + R EL PV F + A Y + + + Sbjct: 58 PRHDGLWLLEALRAGELDVPVLVLTTFDDDELALAAIAAGARGYLLKDVTLDSLVDAVRT 117 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L G ++ + L A +A D G ELT RE+E L ++ G ++ EI Sbjct: 118 LAGGGTLVQPAITERV--LRAVRAGSVPLDDAAAGDVQELTSRELEILRLLAAGYSNREI 175 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L ++ TV N++++++ K T+ R+ A+ A+ + ++ Sbjct: 176 AEALHLAEGTVKNHVSTVLLKLGTRDRTRAVLRALHHGLL 215 >gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 217 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 10/181 (5%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 V Q++ +IV S P M LSE + + E V +T Sbjct: 44 VDLPPHQDEHYVAIVDSSLPDLSEVKMTLSELEHVDATILVNAEPNLGV----ESLLTWS 99 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGK 182 Y FD ++ GL + + RD L L Y N+ + ++ Sbjct: 100 NLKGLFYFEDDFD--KVIRGLKGILSGENWLSRDILNR---LVGYLVNLNHTVTELDTKL 154 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ LT + +G ++ +IA L +S +TV +++ SI RK K R AIA+A R Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|327190926|gb|EGE57980.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 305 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 VA R G++ + G+ L+ L IG L A +S D + F LT RE E Sbjct: 191 VAAARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRFSLTQRESE 250 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 251 VLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 10/162 (6%) Query: 92 LSEKDKYYNVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + + QR VF T I + Y I + L Sbjct: 73 MDGVEAIKQLRQRRQNARIIVFTAFDTDERIIHAIQAGADGYLLKGSPRDEIFKAIRLAM 132 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSD 204 G ++ L LL + + + + ELT RE+E L +++G + Sbjct: 133 EGGSLLQP--LVASKLL-RHMGQRERENNYRTLQGIPRVEELTERELEVLRLLAQGMPNK 189 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS T +++SIM K R+ A+A A + ++ Sbjct: 190 EIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRGLI 231 >gi|190893145|ref|YP_001979687.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698424|gb|ACE92509.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 305 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 VA R G++ + G+ L+ L IG L A +S D + F LT RE E Sbjct: 191 VAAARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRFSLTQRESE 250 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 251 VLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 231 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 17/187 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTL-----PENITPPAGMD 127 I+ + P ++ + + E D Y + P PV + I Sbjct: 43 EILQKNPPDLVISDIMMPEVDGYQFLKKLRDDPRYEAIPVVFLTARGMTTDRIQGYNAGC 102 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---------ANMFKSYDV 178 + Y S FD + + L + + + L Q + Sbjct: 103 DAYLSKPFDPEELEAIVKNLLERRKATSQANTDASQLAEIAQDIREIKKKLGDSESLATT 162 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 ELT RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 163 PPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVR 222 Query: 239 YAVRNNI 245 +A+++ + Sbjct: 223 FALKHGL 229 >gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 223 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + E A L V + + V + P ++ + Sbjct: 1 MAIRVLLVDDQPLLRTGFRMILE---AEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D P ++ L E + L A + Sbjct: 58 MPRMDGVEATRQITGPDRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAHELVQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + LL Y ++ + LT REVE L ++ G ++ Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDALHTLTEREVEVLKLVARGLSNA 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A YA + +V Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLRLRDRVQAAVYAYESGLV 218 >gi|260892920|ref|YP_003239017.1| two component transcriptional regulator, LuxR family [Ammonifex degensii KC4] gi|260865061|gb|ACX52167.1| two component transcriptional regulator, LuxR family [Ammonifex degensii KC4] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 7/156 (4%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 M E + L+ + H E L A I ++ Sbjct: 61 DMGGVEACREIKRLRPSVAVVALTVHDQEEYCLAMLEAGAAGYVLKESSADQLIEAIVRA 120 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G L RL A F + G LT RE E L ++ G ++ EIA Sbjct: 121 ARGEEYLSPRL------AGKMVKWFSRAESKRGL-CGLTPREKEILRLLASGLSNREIAR 173 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L +S TV N++ SI +K R+ A +AV++ Sbjct: 174 RLYLSEKTVKNHLTSIFQKIGVSDRTQAALWAVKHG 209 >gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 237 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 W + + + +S + + LT RE+E L W ++GK+S +IA IL +S+NTV+ Sbjct: 152 WLAQMTHTLLSRIIRSQNAARVR--HLTSREIEVLKWTADGKSSQDIADILTLSKNTVDF 209 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I + ++K ++ A+ AV ++ Sbjct: 210 HIKNTVQKLNVPNKTAAVVQAVLLGLI 236 >gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] Length = 248 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +R+ E GL Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLT 166 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + S D + ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 IPASADTAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248 >gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905] gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus C3-41] gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905] gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Lysinibacillus sphaericus C3-41] Length = 224 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + + + G L PK + ++ + E L+ ++ Sbjct: 90 VTHALKSGALGYMLKEMDADEIVEAIKVVANGGSYLHPK---VTKNLVAEFKRLSEHENK 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++G+++ I L IS TV N+++SI++K Sbjct: 147 GNFHQTEIRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVN 206 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 207 DRTQAVVTAIKNG 219 >gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 226 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 6/154 (3%) Query: 97 KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA-RIRIGLMLLFPKGRIIL 155 + + + T + G+ + TF + RI ++ +I Sbjct: 73 STLRISEIAQQAKLSRAETDYIDRMKKMGITDGLIIPTFGMDLRIVKFVLGQVTDFSVIE 132 Query: 156 RDRLWEIGL---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 D L+E +A + + D + L REVE L WI++GKT+ EIA ILG+ Sbjct: 133 NDNLFEFTATLQMAHRRLDELARQDEPIRRR--LPRREVEILHWIAKGKTNAEIAAILGV 190 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV +IA + +K R+ R I+ Sbjct: 191 AAPTVATHIARMFQKLDVNDRAALAVKGFRYGII 224 >gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 225 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----- 184 C A I + +G + + L LA F+ + GKD Sbjct: 103 ACLKKSSTAEELIETIRRANRGEYPINESLMGSPSLAKQVLAQFQDVSM-LGKDASSFVA 161 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + LT I+ G T+ +IA L IS T+ N++++I+RK R+ A+ A+R Sbjct: 162 PLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRAHAVVVAIRCG 221 Query: 245 IV 246 ++ Sbjct: 222 LI 223 >gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + ELT RE+E L + EG+++ EIA ++ IS +TV ++ +I K R+ A+ Sbjct: 139 ARKQQEELTPRELEVLQLLGEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVV 198 Query: 239 YAVRNNIV 246 A + I+ Sbjct: 199 IAFKRGIL 206 >gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 254 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R L E GLLA A+Q + +D + +LT RE ECL+W +EG T+ EIA L Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S T+ ++ S M+K K R A+ AV ++ Sbjct: 218 RSVATITLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] Length = 214 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 42/79 (53%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y + + ELT RE++ L + EG ++ EIA L IS +T+ +++ +I Sbjct: 135 LVNYYKGKESNNVSEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 194 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 195 FRKLEVKNRTQATSWAKRN 213 >gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] Length = 224 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + + + G L PK + ++ + E L+ ++ Sbjct: 90 VTHALKSGALGYMLKEMDADEIVEAIKVVANGGSYLHPK---VTKNLVAEFKRLSEHENK 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++G+++ I L IS TV N+++SI++K Sbjct: 147 GNFHQTEIRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVN 206 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 207 DRTQAVVTAIKNG 219 >gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 197 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 5/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + K R + H + + Sbjct: 30 DVVIMDISLPDMSGIEATRLIKEAVPETR---VIGLTMHEEEPFVLEFLRAGADAYIVKR 86 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A +G + +G+ +L + ++ Y + ++ + LT RE E L Sbjct: 87 SAAADLVGAIRAVMEGQAVLDPAVTR-AVVEGYVSRPGRAVGQ-PEEPCPLTPREREILV 144 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+EG T+ EIA L IS TV + ++++ K R+ + YA+R +V Sbjct: 145 LIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVRYAIRQGLV 195 >gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 17/191 (8%) Query: 57 GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116 GA L R L +D ++ + E + + +++ Sbjct: 38 GAEGVELARELLPDVVLMDLVMP---------GIDGVETTRRLKAVSPSSQVIVLTSFAD 88 Query: 117 PENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + + P Y + + ++ D +AA F + Sbjct: 89 DDKVFPAIKAGAISYLLKDISPEDLAHAIRAACRGEAVLHPD-------VAAKLMQEFNT 141 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + +LT RE++ L +++G ++ EIA L +S TV +I++I+ K R+ Sbjct: 142 PRPNEAPVEQLTPREMDVLRLVAKGMSNKEIAETLIVSEKTVKTHISNILSKLHLADRTQ 201 Query: 236 AIAYAVRNNIV 246 YA+R +V Sbjct: 202 VAIYALRKRLV 212 >gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 218 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 43/79 (54%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y + + + ELT REV+ L + EG ++ EIA L IS +T+ +++ +I Sbjct: 139 LVNYYRGREANNIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 198 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 199 FRKLEVKNRTQATSWAKRN 217 >gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25] gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25] Length = 210 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 43/79 (54%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y + + + ELT RE++ L + EG ++ EIA L IS +T+ +++ +I Sbjct: 131 LVNYYRGKEANSIIEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 190 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 191 FRKLEVKNRTQATSWARRN 209 >gi|156741340|ref|YP_001431469.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232668|gb|ABU57451.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 75/228 (32%), Gaps = 11/228 (4%) Query: 21 SFVSHLPTRSDLLARMIPLDCTVSWTMRMYAL--TEYVGASHFLLVRWDLFQEQKLDSIV 78 + S P+ L+ L + E VG + D +D +V Sbjct: 6 TAGSSSPSTRVLIVDDHELA-RAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVD-LV 63 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 D ++ + E + L + P+ + L Sbjct: 64 MMDLQMPVIDGI---EATRRIKALHPAIGIIMVTVQAKPDALMEALRAGVAGYLLKDASR 120 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 R IG + +G L L L A+ + D + LT RE + L + Sbjct: 121 REIIGAVRQVLRGEAFLNPDLVLQTL--RRLAHATPTDDATPIEP--LTPREQQVLRLLM 176 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GKT+ EIA L IS TV ++ I+ K R+ A A+ +V Sbjct: 177 QGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 224 >gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +R+ E GL Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLT 166 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + S D + ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 IPTSADTAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248 >gi|325066389|ref|ZP_08125062.1| two component LuxR family transcriptional regulator [Actinomyces oris K20] Length = 234 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSY 176 + ++ SL + + G ++L P I+ D RLW G ++ ++ Sbjct: 101 GVRGFVAKEDGASSLAGAIHQAVAGNLVLSPTSSAIISDQARLWASGSSRPSESIPVPTH 160 Query: 177 DVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE E LT + + KT+ +IA L +S TV ++++I+ K + Sbjct: 161 AQQPPSPLPHGVTLSEREREVLTLVVDAKTNKQIATRLRVSEATVKTHVSAIIAKLGVQD 220 Query: 233 RSGAIAYAVRNNIV 246 R GA YA+++N+V Sbjct: 221 RVGAAVYALQHNLV 234 >gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905] gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905] Length = 210 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 10/164 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141 D V + + + P V L ++ PA Y T + +I Sbjct: 53 MDNVMPIMTGAEATAEILAAWPEAKIMMVTSFLDDDKVYPALEAGAVSYILKTSNAKQIA 112 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + ++ + + + M + LT RE+E L +++GK Sbjct: 113 EAIRKTMGGETVLEPE------VTSKMMHRMRHGNNTPL--YDHLTDREMEVLLLMAQGK 164 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L I+ TV ++++I+ K + R+ A+ YA +N + Sbjct: 165 ANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208 >gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 234 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 13/156 (8%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + P L + T + + + Y +++ G+ Sbjct: 91 GARATQAICAIPDGPQVLVVTNYSTDQDVVGAVSAGAVGYLLKDAPPSKVLDGIRRAARG 150 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ + + ++ M + LT RE+E L + EGK++ +IA L Sbjct: 151 ESVMAPEIMGKL------MGQMTNPTEA-------LTPRELEVLALVGEGKSNRDIARHL 197 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ TV ++++ + RK R+ A+A A + I+ Sbjct: 198 VLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGII 233 >gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 214 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGMDNRYCS-- 132 S P ++ + + D L+R EL P + + E T + C Sbjct: 48 ESLRPDVVLMDIKMPGTDG-IEALRRLRELDNPAKVLIVTSFTEQRTVVPALRAGACGYV 106 Query: 133 -LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 D + + + ++ + LLA + G+ LT RE Sbjct: 107 YKDVDPDALAGAIRSVHAGHVLLQPE--VAGALLAQ------EDAGGGTGRGSTLTERER 158 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E L I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 159 EVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074] gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074] gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074] Length = 222 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 16/170 (9%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLT 134 P ++ + + D L+R EL P F + Y Sbjct: 59 QPDVVLMDVKMPGMDG-VEALRRLRELANPARVLVVTSFTEQRTVVPALRAGAGGYVYKD 117 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 D + + + ++ + LL+ + + G+ LT RE E L Sbjct: 118 VDPEALARAIRSVHAGHVLLQPE--VAGALLSQDEHGQGQ------GRGGSLTEREREVL 169 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 170 GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 219 >gi|22536505|ref|NP_687356.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76788056|ref|YP_329044.1| LuxR family transcriptional regulator [Streptococcus agalactiae A909] gi|76797803|ref|ZP_00780068.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77405005|ref|ZP_00782106.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410572|ref|ZP_00786932.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533337|gb|AAM99228.1|AE014206_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76563113|gb|ABA45697.1| DNA-binding response regulator, LuxR family [Streptococcus agalactiae A909] gi|76586817|gb|EAO63310.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77163287|gb|EAO74238.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176444|gb|EAO79212.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 213 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E D L P + L P Y T Sbjct: 50 PDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 109 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + + + I + K++D LT RE + L Sbjct: 110 AAEILNAIRKVSRGEQAIENE-----------VDKKIKAHDKCPALHEGLTARERDILNL 158 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA ++++V Sbjct: 159 LAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 208 >gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 23/236 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D ++ +W + +G S L + Q + + S++P D R Sbjct: 5 DECVELLSAIDARTWFESLVFSARKLGYSKVLYALKPNKEAQNNAAEIMSNFPDDWRRRY 64 Query: 91 ALSE--------KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIR 141 + + L P E E + +L + + Sbjct: 65 DNENYSIIDPTVFHSFSSSLPIPWEDKLYKTQKEKEFAEEARWAGLSHGMTLPIHGPQGQ 124 Query: 142 IGLMLLF------PKGRIILRDRLWEIGLLAAYQA----NMFKSYDVHWGKDFELTGREV 191 +G++ L P+ + L++ L LL Y N F+ + LT RE+ Sbjct: 125 VGMLSLSCDPMSEPEYQKTLKNSLGAATLLRDYAVTSSFNHFQQGSGYTAP--HLTPREL 182 Query: 192 ECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W +E KT+ EI IL +S TV + +I RK +R A+A A++ +++ Sbjct: 183 EILHWAWAE-KTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDLI 237 >gi|147677779|ref|YP_001211994.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146273876|dbj|BAF59625.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 217 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT REV+ L +++G ++ IA L IS TV N++ SI +K Sbjct: 141 RLSTISSRYSHPLGLTRREVDVLRLVAQGDSNRSIAQKLFISEKTVKNHLTSIFQKLGVD 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +AV+N I+ Sbjct: 201 DRTQAALHAVKNKII 215 >gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048] gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048] Length = 215 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++ GK + EIA IL +S TV +I +I++K R+ A A+R I Sbjct: 154 LTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIRKKI 213 Query: 246 V 246 V Sbjct: 214 V 214 >gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] Length = 215 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ E+A +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL S4-171] Length = 228 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 50/133 (37%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + L V + G + P+ I L + Q Sbjct: 91 VTEALRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGV 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A+++ Sbjct: 211 DRTQAVVTAIKHG 223 >gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] Length = 208 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 16/170 (9%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P ++ + + E D + Q P V L + PA Y T Sbjct: 48 PDIILMDLVMEEMDGIEATKQLIKQWPEAKVIIVTSFLDDEKVYPALEAGATSYLLKTSK 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 I + + ++ + + + M K H ELT RE+E L Sbjct: 108 AGEIAAAIRRTYEGQSVLEPE------VTGKMMSKMRKPSLPHE----ELTAREMEILLL 157 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++GKT+ EIA L I+ TV ++++++ K + R+ A+ YA ++ +V Sbjct: 158 MTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKLV 207 >gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 487 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +++ RE E L ++ G T+ +IA+ L IS NTV ++ +I K ++R+ A YA+ Sbjct: 3 NESQISEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYAI 62 Query: 242 RNNIV 246 RN IV Sbjct: 63 RNGIV 67 >gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22] gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 213 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 16/169 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D L+R EL P F + Y Sbjct: 51 PDVVLMDVKMPGMDG-VAALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + LL+ +AN + G+ LT RE E L Sbjct: 110 DPDALAGAIRSVHAGHILLQPE--VADALLSQEEANSGQ------GRGGSLTEREKEVLG 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 224 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 A YC + + + + + EI + + Sbjct: 93 LIAAGAQGYCLKGIPAESLILAVRSVAGGASWWDQTATTEIRAAFEGNSTVVLPAKTEGT 152 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E L ++ GK++ EIA IL I+ TV ++ +I++K + R+ A A+ Sbjct: 153 LENPLTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAI 212 Query: 242 RNNIV 246 + +V Sbjct: 213 QKGLV 217 >gi|319794223|ref|YP_004155863.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596686|gb|ADU37752.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 303 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 55/132 (41%) Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 + + H L + ++P + +L A + + R + L E Sbjct: 160 IAWRSPQAALWLHALEDPVSPGLLPQSLEAALMAGAAIVIGTATGMRLSVRNLGAAALGE 219 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL A Q + + LT RE E L+W+++GKT+ +I ILG S TVN ++ Sbjct: 220 TMLLFAMQRDGTAGASSARLAEAALTPRETEVLSWLAKGKTNRDIGEILGTSPRTVNKHL 279 Query: 222 ASIMRKTATKTR 233 I K +TR Sbjct: 280 EHIFEKLGVETR 291 >gi|222151857|ref|YP_002561017.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] gi|222120986|dbj|BAH18321.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] Length = 207 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 77/170 (45%), Gaps = 16/170 (9%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFD 136 P ++ M ++E D + + ++ + + E+ +D + Y T Sbjct: 47 PDIVLMDMVMNEMDGIEATAQIKSQMPKVKVVMLTSFIEDKEVYRALDAGVDSYILKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 IR ++ + + ++ + ++ +A M + ++H LT RE E L Sbjct: 107 AEEIRDAIIKTYQGESVFEKEVMMKM------RARMNQKAELH----DMLTEREKEILLL 156 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA +++++ Sbjct: 157 IAKGYSNQEIADASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 206 >gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 82 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N S LT RE + L W + GK+S EI IL +TVN ++++I+RK Sbjct: 4 NARHSQHPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFDV 63 Query: 231 KTRSGAIAYAVRNNIV 246 TR A+ A+R ++ Sbjct: 64 PTRVAAVIKAIRYGML 79 >gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPAVELVQAIRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDALHTLTE 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L ++ G ++ EIA L +S TV ++ ++ K + + R A YA + +V Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESGLV 218 >gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 236 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 8/179 (4%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ L +V D + + K R L + N Y Sbjct: 60 EELLPDVVLMDVWMPRRSGIDACAEIKAAAPSTRIIMLTSS--EEEEDLFGAVRAGANGY 117 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH---WGKDFELT 187 + + + +I GLL M + + L+ Sbjct: 118 LLKDVPAEEVADAIRAVVTGQSLITPKM---AGLLLGEFNAMRRRDEERNLGLPGAPRLS 174 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE++ L ++ G + EIA LGIS NTV N++ +I+ K +R A+ YAVR IV Sbjct: 175 PRELDVLRLLARGMANREIAGSLGISENTVKNHVRNILEKLQLHSRMEAVVYAVREKIV 233 >gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] Length = 215 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 14/218 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLV--RWDLFQEQKLDSIVSSDWPFDLVRCM 90 R++ +D + + AL + FL+V D K ++ D + Sbjct: 4 AIRILLIDDHTLFRSGLKALLQR--QDDFLVVGEAADGLDGVKQAELLKPDVVLLDLDMP 61 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLL 147 ++ ++ +L + + G Y + + + Sbjct: 62 VMNGREALAQILSGCPNAAVLMLTVSEDGDDLAECMRGGARGYLLKNINADFLLDSIRRA 121 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 ++ + LLA + K+ + LT RE E L W++ G ++ EIA Sbjct: 122 VDGDSVLSPE--MTAKLLARLRQPAAKASEADA-----LTPRERETLGWLARGASNKEIA 174 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++ +TV ++ +I+RK + +R A YAV + + Sbjct: 175 RALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212 >gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435] gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 207 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 75/182 (41%), Gaps = 17/182 (9%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + ++ + +D P ++ + + E + V ++ V + ++ + ++ Sbjct: 37 QSLINYLNENDIPDIILLDLVMPEMNGIEVTEYVKSHFPDIKVLVLTSYVDDEHVISAIN 96 Query: 128 ---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + Y + ++ + + RII + ++ ++ Sbjct: 97 KGADGYEMKDVEPQKLIQTIHDVLNNKRIIHPEA-----------QSVIETVSSKPHNTN 145 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L + +GKT+ EIA L +S T+ +++ I K + R+ A YA+ N Sbjct: 146 KLSKREIEVLAEMVKGKTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENK 205 Query: 245 IV 246 +V Sbjct: 206 LV 207 >gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] Length = 241 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 ++ R+ ++G + D L+ REVE L W++ GK++ IA ILG+S Sbjct: 149 IQLRMLQLG-CQELYSRTIMLRDYDAPAPPHLSEREVEILQWLARGKSNAVIAAILGVSP 207 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV+ + K R A+ A+R ++ Sbjct: 208 HTVDTIMRRAFVKLNASNRIAAVLKALRVGLI 239 >gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis] Length = 246 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 19/177 (10%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPAGMDN--------RYCSLT 134 + + + +NVL + + PV H E + + + + Y L+ Sbjct: 65 EPILMLDAPVLHNVLSQLSRAMEPVDMHDLAHVSEEGLLLRSKLRDLPLPRQAVSYPLLS 124 Query: 135 FDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAA-YQANMFKSYD-VHWGKDFELTGR 189 D R I + + R R +I LLA + A + K D LT R Sbjct: 125 ID-GRGAILAIASNACEQEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGADIAGTPPLTRR 183 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W + GK+ E AVILGIS TV ++A+ K + + A+ A++ ++ Sbjct: 184 EQETLRWTAAGKSYWETAVILGISERTVRYFMANARIKLDAVSNTQAVVKALQRGLI 240 >gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 231 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 2/133 (1%) Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMF 173 L + G+ + Y + I + G + L + A+Y Sbjct: 99 RLIQGEAAEFGLRDGY-VVPISTIDGEIVSLSFGGPGTLPASADLSVLNFAASYALGRHL 157 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE +CL W EGKT+ EI+ ILGIS++TV +I + K ++ Sbjct: 158 HRIATWRRVNSNLTAREWDCLLWAGEGKTNWEISAILGISKSTVTKHIMAARAKLGAVSK 217 Query: 234 SGAIAYAVRNNIV 246 + AIA A+R ++ Sbjct: 218 AHAIAMAIRTKLL 230 >gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 258 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 84/242 (34%), Gaps = 31/242 (12%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ L G +FL+ R + I++ P + Sbjct: 20 FISACYQAGNADRVRSEFVTLIREYGFEYFLVSRRMTGELASTGQILAQHLPEGWIEVYR 79 Query: 92 LSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPA-----------GMDNRYCSLTF 135 + + V + + P LP + G+ Y + Sbjct: 80 AKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRANVFFHDAGRYGLQGGY-AFPV 138 Query: 136 DVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 IG + L + R + R W + L+ N+ + +V Sbjct: 139 HGRAGFIGAVFLGGEDRQLPSLHVELLDAATRAVFWRLLDLSGQVHNLNNAPNVSA---L 195 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E LT +++G TS EI L IS +TV+ YI I R+ + K R +A A RN Sbjct: 196 ELTRREMEVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRNG 255 Query: 245 IV 246 ++ Sbjct: 256 LL 257 >gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519] gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii] Length = 211 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 16/203 (7%) Query: 52 LTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTEL- 108 LT+ + +F +V + LD I P D+V + + + L++ +L Sbjct: 13 LTKILEMEDNFEVVFKAADGYEALDYI--EQNPVDIVLLDINMPNMNG-IETLKKMKQLD 69 Query: 109 ------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 V+ T I N Y + + + ++ G I + Sbjct: 70 FETKIIMLTVYDTREYLIETLNLGANGYMLKDAETDSLVKAIEAVYNGGSYIHPN---LA 126 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G L S ++ G D LT RE E L I+EG ++ +I+ L IS TV N+++ Sbjct: 127 GELFKEINRQRVSRNIKSGVD-SLTRREYEVLLLIAEGMSNKDISDHLVISEKTVKNHVS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 SI+RK + R+ A +A++ + Sbjct: 186 SILRKLDLQDRTQAAIFAIKQKL 208 >gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL N1-067] Length = 228 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 50/133 (37%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + L V + G + P+ I L + Q Sbjct: 91 VTEALRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGV 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A+++ Sbjct: 211 DRTQAVVTAIKHG 223 >gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 213 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 40/68 (58%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +LT RE + L + +G ++ E+A L IS TV N++ SI RK K R+ A+ Sbjct: 143 RRRDEMKLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLTSIFRKLEVKDRTQAVI 202 Query: 239 YAVRNNIV 246 YA++N +V Sbjct: 203 YALKNKVV 210 >gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 8/134 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + T + + + V + G L+ P + + E ++ +A Sbjct: 106 FEAIKAGATGYLLKNVQLDEVPEAVRGVHEGQSLINP---AMAAKLITEFANMSRKEAER 162 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 V LT RE+E L +++G + EIA L IS NTV N++ +I+ K + Sbjct: 163 PPQLPVPR-----LTDREMEVLRLVAKGMNNREIAKQLFISENTVKNHVRNILDKLQLHS 217 Query: 233 RSGAIAYAVRNNIV 246 R A+ YAVR ++ Sbjct: 218 RMEAVVYAVRERML 231 >gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 215 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + G + L P L + Sbjct: 91 VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + + LT RE E L +++G ++ E+A +L I+ TV +++SI+ K Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLS 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YAV+N IV Sbjct: 201 DRTQAALYAVKNGIV 215 >gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 218 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 42/79 (53%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y + + ELT RE++ L + EG ++ EIA L IS +T+ +++ +I Sbjct: 139 LVNYYKGKESNNVSEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 198 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 199 FRKLEVKNRTQATSWAKRN 217 >gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24] gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24] gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24] Length = 213 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 16/161 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D +R + + V+ TE V L D +L + + G Sbjct: 67 DALRRLRELDNHARVLVVTSFTEQRT-VVPALRAGAAGYVYKDVDPDALAGAIRSVHAGH 125 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LL P+ LL+ +++ G+ LT RE E L I++G+++ Sbjct: 126 ILLQPE---------VAGALLSQEESSSGP------GRAGSLTEREREVLGLIADGRSNR 170 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 211 >gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 16/142 (11%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F+ L D + +L + R+ G ++ D L E +A + Sbjct: 101 FNALRAGAAAYRSKDIKPAALADIIRRVARG--------EYVINDVLMEEPRIAGRILSQ 152 Query: 173 FK--------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 F+ + D+ L+ RE+E L I+ G ++ EIA LGIS TV N+I+SI Sbjct: 153 FRNLPEVQTLADDLGIQIFTPLSEREIEVLERIAAGSSNKEIADALGISTQTVKNHISSI 212 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +RK + R+ A+ +A+R + Sbjct: 213 LRKLSLNDRTQAVIFALRRGWI 234 >gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 201 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 164 LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ Q + + H +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ Sbjct: 116 LISIVQTRLARRPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K TR A+ A I+ Sbjct: 176 NAREKLGVATRIEAVVRASSAGII 199 >gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)] gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor A3(2)] Length = 210 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 16/161 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D +R + + V+ TE V L D +L + + G Sbjct: 64 DALRRLRELDNHARVLVVTSFTEQRT-VVPALRAGAAGYVYKDVDPDALAGAIRSVHAGH 122 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LL P+ LL+ +++ G+ LT RE E L I++G+++ Sbjct: 123 ILLQPE---------VAGALLSQEESSSGP------GRAGSLTEREREVLGLIADGRSNR 167 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 168 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 208 >gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] Length = 219 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 13/214 (6%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 ++ + +L E A+ + V + Q + P ++ + + + D + Sbjct: 11 VEDHTILRHGLRSLLE---AAGHVQVVGEAGDGQSAIRCILDTAPDLVLLDLNMPKMDGF 67 Query: 99 YNVLQ-RPTE----LFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGR 152 VL+ R + + H I + YC + + + + R Sbjct: 68 SVVLEIRKRQPETKILALTMHDDDAYILKAFKAGVDGYCLKSSGQDELMSAVNAVLSGKR 127 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 I + + + L +AN W LT RE E L ++EG + EIA L I Sbjct: 128 FISPE-ISDKVLEGYLEANRTLKEQSDWD---SLTQREREVLKLVAEGYQNKEIAEYLFI 183 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV + A+IMRKT + S AYA+ ++ Sbjct: 184 SPKTVEKHRANIMRKTDLHSASSLTAYAIEKGLL 217 >gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri] Length = 250 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DF 184 S A G++ + D L I L+ + ++ ++ K + Sbjct: 122 FSFPIHTANNGFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNN 181 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL W EGK+S +I+ ILG S TV ++ + K T R +I+ A+ Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTG 241 Query: 245 IV 246 + Sbjct: 242 AI 243 >gi|254788088|ref|YP_003075517.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237687530|gb|ACR14794.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 303 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT RE E L W++ GKT+ EI ILG S T+N ++ I +K + R+ A Sbjct: 236 SRLREHLPLTTRESEVLLWLARGKTNREIGQILGTSPRTINKHLEQIYKKLEVENRTTAA 295 Query: 238 AYAVR 242 A A++ Sbjct: 296 AKALQ 300 >gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + AR+ G+ + ++ E L+ Y + + G Sbjct: 94 RAGASGFLLKDSPPARLLEGVRTVARGEALLDPSVTRE--LIGRYATRVRPREEPVHGAL 151 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L +++G+++ EIAV L +S TV Y++ ++ K + R A+ A R Sbjct: 152 AGLSPRELEVLRLVADGRSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRT 211 Query: 244 NIV 246 +V Sbjct: 212 GLV 214 >gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 5/152 (3%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 E + + +++ R L A + G Sbjct: 71 EATRTITRTSPRIGVLVLTMFRDDDSVFAAMRAGARGYLLKESGAEEIARAVRAVAAGEA 130 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 I + L Y A+M D ELT RE E L I++G+++ EIA L +S Sbjct: 131 IYGPEIARRVL--TYFADM---PDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLS 185 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV N++++I K R+ AI A + Sbjct: 186 PKTVRNHVSNIFMKLHVADRAQAIVLAREAGL 217 >gi|16330984|ref|NP_441712.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653479|dbj|BAA18392.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 222 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 14/184 (7%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITP 122 +Q +V D + + ++++ K + + + V Sbjct: 45 MQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADA 104 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 D+R L + G + P I + A S Sbjct: 105 YCMKDSRTELLIEAIQATHGGFAWIDPAIARI-------VLAHAPGAEPSEPSSPSRTSL 157 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE+E L I +G ++ +IA L I+ TV ++ +I+ K R+ A A+R Sbjct: 158 SYGLTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIR 217 Query: 243 NNIV 246 + +V Sbjct: 218 SGLV 221 >gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 210 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 + P V L ++ PA Y T + +I + ++ + Sbjct: 70 LAAWPEAKIMMVTSFLDDDKVYPALEAGAVSYILKTSNAKQIAEAIRKTMGGETVLEPE- 128 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + + M + +LT RE+E L +++GK + EIA L I+ TV Sbjct: 129 -----VTSKMMHRMRHGNSTPLYE--QLTEREMEVLLLMAQGKANQEIADELYIALKTVK 181 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245 ++++I+ K + R+ A+ YA +N + Sbjct: 182 THVSNILAKLEVQDRTQAVVYAFQNGL 208 >gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L +++G T+ EIA +S TV N++++I+ + + R+ A YAV Sbjct: 152 DTPLTTRELEVLKLLAKGNTNKEIAKAFNLSEGTVKNHVSNILMRLGLRDRTQAAVYAVE 211 Query: 243 NNI 245 + + Sbjct: 212 HGL 214 >gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 198 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 12/168 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P ++ + + D + + + F L + + + + + A Sbjct: 37 PDVVLMDLMMPGLDGLSALRELKGTGAKVIMLTSFLDLEKAMACIEEGALGFLTKDIEPA 96 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + + + + + + + + + K LT RE++ L ++ Sbjct: 97 DLVDAIRAVHRGEPRLHPEVMKRLMV--------RTAQPHQPSKRDLLTPRELDVLRALA 148 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G T+ EIA L IS TV +I+SI+ K R+ A +AVR +V Sbjct: 149 HGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGLV 196 >gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262] gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e] gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes Clip81459] gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes 10403S] gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503] gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes J0161] gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-064] gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28] gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL J1-175] gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e] gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262] gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes] gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503] gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL S4-378] gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL J1-023] gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816] gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220] gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes str. Scott A] Length = 228 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 50/133 (37%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + L V + G + P+ I L + Q Sbjct: 91 VTEALRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGV 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A+++ Sbjct: 211 DRTQAVVTAIKHG 223 >gi|218515979|ref|ZP_03512819.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 209 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 VA R G++ + G+ L+ L IG L A +S D + F LT RE E Sbjct: 95 VAAARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRFSLTQRESE 154 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 155 VLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 202 >gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 10/223 (4%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 L R++ +D + + E +G ++ S+V P ++ Sbjct: 14 EQGLIRVVVVDDHQVVREGLRMMLEILGEGFVMVGE--AADGASALSVVKETQPDVVLMD 71 Query: 90 MALSEKDK----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIG 143 + + D + + P + + T E+ G+ C L + Sbjct: 72 LRMPGMDGLEAITHLRGRWP-HIAIVILTTYNEDDLMLRGLRAGACGYLLKDTSSETMFQ 130 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + +G +L+ + LL+ S + EL+ RE+E L ++ G+ S Sbjct: 131 AIRSAARGETLLQPGVV-ARLLSRASQERRPSLGTRSSGEGELSERELEVLRKVASGERS 189 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA LGIS TV ++ SI K +R+ A+A A+ ++ Sbjct: 190 KEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVAVALERGLL 232 >gi|25010384|ref|NP_734779.1| hypothetical protein gbs0310 [Streptococcus agalactiae NEM316] gi|77408096|ref|ZP_00784843.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77413304|ref|ZP_00789499.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094736|emb|CAD45955.1| unknown [Streptococcus agalactiae NEM316] gi|77160618|gb|EAO71734.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77173280|gb|EAO76402.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 213 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E D L P + L P Y T Sbjct: 50 PDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 109 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + + + I + K++D LT RE + L Sbjct: 110 AAEILNAIRKVARGEQAIENE-----------VDKKIKAHDKCPALHEGLTARERDILNL 158 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA ++++V Sbjct: 159 LAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 208 >gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103] gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103] gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis AJ13355] Length = 240 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%) Query: 141 RIGLMLLFPKGRIILRDRLWEI----GLLAAYQANMFKS--YDVHWGKDFELTGREVECL 194 +G++ + K I R E+ LA ++ + + + + + RE+E L Sbjct: 129 AVGILSIGSKRPFITGSRRVELEVKLHFLAEQSLSLLERLNDEALMVQGNDFSQRELEIL 188 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKTS EI++IL IS +TVN Y ++ ++ ++ YA ++ Sbjct: 189 RWTAEGKTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYAAAIGLI 240 >gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 246 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 18/188 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENIT-----PPAGMD 127 ++ + P ++ + + E D Y + + P PV + +T Sbjct: 57 ELLQQNLPDLVITDIMMPEVDGYQFLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGC 116 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---- 183 + Y S FD + + + L + + +AA + + ++ GK Sbjct: 117 DAYLSKPFDPEELVVIVKNLLERRAVATASSSDGNPDIAALAGQIARIENMLKGKSGITP 176 Query: 184 ------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + Sbjct: 177 TPPPIKIDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELV 236 Query: 238 AYAVRNNI 245 YA+ + + Sbjct: 237 RYALEHGL 244 >gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp. WH 7803] Length = 227 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 5/108 (4%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWI 197 G+M + G+ I D + + +A K G + EL+ RE+E L + Sbjct: 120 GVMFVSSLGKGIDGDFIRSLSAIAEGGNYYPKDVQTAAGYEDIEILPELSDREMEVLKVL 179 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S G T+ EIAV L +S TV +++SI+ K K R+ A+ A++ I Sbjct: 180 SCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227 >gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [polymorphum gilvum SL003B-26A1] gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [Polymorphum gilvum SL003B-26A1] Length = 230 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 4/144 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 QR F P G + GL L + + Sbjct: 89 QRRLFAEATEFGLGEGVGIPIHGARGSLAMASMVSDHGARGLARLMSTVGKDVHL----M 144 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L A + LT RE ECL WI+ GK++ EI+ ILGIS TV ++ Sbjct: 145 SLAFHNHARELLALGRSGRTTVSLTRRERECLLWIAAGKSAWEISRILGISARTVYFHLD 204 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ K A+ A+ ++ Sbjct: 205 NVRAKMGVTNVYHAVVKAIMEGMI 228 >gi|326330817|ref|ZP_08197118.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951347|gb|EGD43386.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 19/186 (10%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-------LFCPVFHTLPENI 120 ++ ++V + P LV + + V++R L F T + + Sbjct: 35 AGDGEEALALVETLHPDVLVLDLRMPGTSG-VEVIERLRAKESRTGVLVLTTFDTDTDVV 93 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 Y + + ++ +A A+ +S Sbjct: 94 AAIEAGATGYLLKDAPTTDLVEAVRATAAGETVLSP-------AVATRLASRLRSP---- 142 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G +L+ RE E LT ++ G T+ IA L +S TV ++ I K R+ A+A A Sbjct: 143 GPSAQLSPREREVLTLVARGTTNRVIAAKLFVSEATVKTHLGHIFDKLGVTDRAAAVARA 202 Query: 241 VRNNIV 246 I+ Sbjct: 203 YDRGIL 208 >gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 8/179 (4%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ +V D + + ++ K + R + V+ + Y Sbjct: 41 ERLSPDVVLVDINLPGLNGLEVARVIKRRDP--RIGIIVLSVYEDDDQLFQAIKVGAAAY 98 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----E 185 S + + + + +I L + + A + F+ + Sbjct: 99 SSKDVNPEDLLYYIRTVATGRYLINDSVLAKPNV-ATRVLHQFRELAATEDEQTSVLFAP 157 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ YA++ Sbjct: 158 LTSREIEILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIYAIKRG 216 >gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 211 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 78/213 (36%), Gaps = 10/213 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + + ++ E +G + Q ++ D +V D + + Sbjct: 7 LVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +++ K Y+ + L F + + Y ++ ++ ++ Sbjct: 66 ATKRIKQYDETIKI--LMLSSFSEQDYVLPAIEAGADGYQLKEVQPDQLVASIVAVYQGN 123 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 LL A K LT RE E L I++G+++ EIA L Sbjct: 124 ANFHPK--VTPALLGRSAAKKKKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+ TV ++++++ K R+ A YAV++ Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|218674106|ref|ZP_03523775.1| two component transcriptional regulator, LuxR family protein [Rhizobium etli GR56] Length = 305 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Query: 140 IRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 R G++ + G+ L+ L IG L A +S D + F LT RE E L Sbjct: 194 ARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANRRSDDEALRQRFSLTQRESEVLL 253 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 254 WIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 63 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 119 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 120 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 159 >gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 260 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 L + + T + +G H + +VR + + V ++ Sbjct: 10 GSFLEALNGTSDSADLTTLLTGTFARLGFPHSCYHVVRLEGAGARL--PYVLHNYKDSWS 67 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVF---HTLPENIT----------PPAGMDNRYCSLT 134 + VL + P PE+++ AG+ + Y S+ Sbjct: 68 EHYFREGFLEIDPVLATCPDRQLPFLWSEAIAPESLSHDQRRMFSDARDAGLHDGY-SVP 126 Query: 135 FDVARIRIGLMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDV-----HWGKDF 184 + + + P+ R ++ ++ + LLA Y +S + + Sbjct: 127 IRGSHGEFATVTVIPEQGGDAARRLIGEQKHLVHLLALYFDRHARSTVINARLSSRRRKT 186 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L W + GKTS EIA I GIS +V ++ + +K T +++ A+ A+ Sbjct: 187 VLSPREQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLG 246 Query: 245 IV 246 +V Sbjct: 247 LV 248 >gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] Length = 191 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 11/187 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------NITPP 123 EQ++ ++V WP +QR P + E T Sbjct: 4 EQQISNVVLHRWPKAWSERYFTQGYLFDDPTIQRVNTSTEPFLWSELEPSYRNTPAPTRV 63 Query: 124 AGMDNRY---CSLTFDVARI-RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 G + C T + + R + ++ L A A + Sbjct: 64 MGEAREFNLGCGFTVPMITLDGQAAGFSLASERADVPPKVRRQLQLIAMHAFARALAQKY 123 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE++ L W++EGK+ EI VIL +S + V+ + K R+ A Sbjct: 124 NPAPVNLTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQTAAT 183 Query: 240 AVRNNIV 246 A+R+N++ Sbjct: 184 ALRHNLI 190 >gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 10/158 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147 + E + L P + T + P Y D + + + Sbjct: 64 GLDGIEALRTLRGLDNPARVLIVTSFTEKRTVVPALRAGAAGYVYKDVDPEALARAIRSV 123 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 ++ + + LL+ + G+ LT RE E L I++G+++ EIA Sbjct: 124 HSGHVLLQPE--VALALLSQDEG-------GGQGRGGSLTEREREVLALIADGRSNREIA 174 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S TV ++++I+ K R+ A +AVR+ I Sbjct: 175 RALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212 >gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 214 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 16/169 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D L+R EL P F + + Y Sbjct: 52 PDVVLMDIKMPGTDG-IEALRRLRELENPARVLIVTSFTEQRTVVPALRAGASGYVYKDV 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + LLA + G+ LT RE E L Sbjct: 111 DPDALAGAIRSVHAGHVLLQPE--VAGALLAQ------EDTGNGTGRGSTLTEREREVLG 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 16/171 (9%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLT 134 P ++ + + D + L+R EL P F + Y Sbjct: 50 QPDVILMDVKMPGMDG-VDALRRLRELDHPARVLVVTSFTEQRTVVPALRAGAAGYVYKD 108 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 D + + + ++ + G L + + + G+ LT RE E L Sbjct: 109 IDPDALAGAIRSVHAGHVLLQAEV---AGALLSQEESA-----PGQGRAGSLTEREREVL 160 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 161 GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211 >gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 241 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELT 187 Y + + + I LL +++ +S D LT Sbjct: 122 GYLLKEISTDEVATAIRAVADGQSQISPS--MAAKLLTEFKSMIQRRSDDRELLPAPRLT 179 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G + EIA L IS NTV N++ +I+ K +R A+ YA+R I+ Sbjct: 180 DRELEVLKLVATGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 238 >gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85'] Length = 260 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + L + + T +G ++ L Q+ ++ + P V+ Sbjct: 8 EYLEHFTSVTDGDRLAELISRFTLGMGYDYYRFAVIILMSMQRRKVVLFNQCPDSWVQAY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137 + ++Q + P++ L E G+ + S Sbjct: 68 TANHMLACDPIIQLARKQTLPLYWNRREERGRFLQEGSRDVMGLAAEFGLRNGISFPLHR 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189 A G+M R RD L E L ++ +N + + LT R Sbjct: 128 AAGGKGIMSFIISERA-SRDLLLESSPLLSWMSNYIFEAAIRIVRVSLREDDPQEALTAR 186 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E ECL +EGKTS EIA ILGI+ VN ++ + RKT + R AI V + I+ Sbjct: 187 ETECLFLATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGIL 243 >gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A Sbjct: 153 THLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212 Query: 238 AYAV 241 + A+ Sbjct: 213 SVAL 216 >gi|291301939|ref|YP_003513217.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571159|gb|ADD44124.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 10/171 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + E PV F + + + Sbjct: 53 PDVVLMDIRMPRMDG-VAATKAIVEAKLPVRVLILTTFDLDEYVVGALRAGAAGFLAKDV 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L LL + + + LT RE E L Sbjct: 112 PAEDLVAAIRSVSSGEAVVAPRILRR--LLEKFVDRLPEPDGATPASLEVLTEREREVLI 169 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G ++ EIA L +S TV ++ ++ K + R A+ A +V Sbjct: 170 LVAKGMSNTEIAKELTVSETTVKTHVGHVLTKLGVRDRVQAVVLAYETGLV 220 >gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 230 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 8/216 (3%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCM 90 R++ +D + + F++V + D++ L+ + + Sbjct: 7 RVLLVDDQELVRSGLRRILRR--KDGFVIVGECADGSEVPDAVAEHTPDVVLMDLRMKRV 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 E + + P + + ++ L A I + + Sbjct: 65 DGIEATRALRSVAAPPPVLVLTTFDDDDLLSGSLRAGAAGFILKDSPAEDLIRAVRTVAE 124 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G L + +LA Y+ + S D + ELT RE++ L I G ++ EI L Sbjct: 125 GGACLDPAVTGR-VLATYRT-VAPSTDGERNRLTELTARELDVLALIGRGHSNSEIGREL 182 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GIS TV +++ I K + R+ AI YA + IV Sbjct: 183 GISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218 >gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 231 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 17/187 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMD 127 ++ + P ++ + + + D Y + + P PV + I Sbjct: 43 ELIEKEIPDLIISDIMMPQVDGYQFLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGC 102 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---------LAAYQANMFKSYDV 178 + Y S FD + + L + ++ ++ + L + A Sbjct: 103 DAYLSKPFDPEELEAIVKNLLERRKVSIKASSESVKLEEIAQEIREIKAQIGQQPHLVTT 162 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 ELT RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 163 PSPIKIELTPREQSVLDLVAEGLMNKEIASRLNTSVRNVEKYVSRLFSKTGTNSRTELVR 222 Query: 239 YAVRNNI 245 +A+++ + Sbjct: 223 FALKHGL 229 >gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 288 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHWGKDFELTGREV 191 +G++ L + D + + A A+ M + D LT RE Sbjct: 173 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLAHAAHAYLMPRLADPIAPVGTGLTLRER 232 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GKT+ EI +I GI+ TV ++ + + K ++ A A ++ Sbjct: 233 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 287 >gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 237 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHWGKDFELTGREV 191 +G++ L + D + + A A+ M + D LT RE Sbjct: 122 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLAHAAHAYLMPRLADPIAPVGTGLTLRER 181 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GKT+ EI +I GI+ TV ++ + + K ++ A A ++ Sbjct: 182 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236 >gi|209550642|ref|YP_002282559.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536398|gb|ACI56333.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 A R G++ + G+ L+ L IG L A +S D + F LT RE E Sbjct: 191 AAAGRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEMLRQRFSLTQRESE 250 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L WI++GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 251 VLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 237 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKDFELTGREV 191 +G++ L + D + + AA+ M + D LT RE Sbjct: 122 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLSHAAHAYLMPRLADPIAPVGTGLTLRER 181 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GKT+ EI +I GI+ TV ++ + + K ++ A A ++ Sbjct: 182 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236 >gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] Length = 216 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 13/219 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD-----WPFDLV 87 L R+I +D + M L + +V E+ L + +++ F + Sbjct: 3 LCRIILVDDHSLFRSGMRGLLDRY--DGIRVVGEASTGEEFLAMLPATEADVVFMDFAMP 60 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 +K + + +F + + + + + Sbjct: 61 GMNGAETTEKALALEPGLKVITLSMFGDENYYSRMVQAGAKGFLMKDSPMDEVLRAIETV 120 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 G + L + + M + + G D L+ RE+E L + G ++ EIA Sbjct: 121 AAGGTYFCEEVLRSLA------SRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIA 174 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS+ TV+ + A+I+ KT K + + YAVR+ +V Sbjct: 175 DELFISKRTVDKHRANILEKTGCKNTASLVVYAVRHGLV 213 >gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 216 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL Y+ +S + + ELT RE++ L + EG ++ EIA L IS +T+ +++ Sbjct: 136 QLLTYYKGKELQSM-IEPATEVELTRREIQVLKMLKEGGSNIEIADSLFISEHTIKSHLY 194 Query: 223 SIMRKTATKTRSGAIAYAVRN 243 +I RK K R+ A +A RN Sbjct: 195 NIFRKIEVKNRTQATRWAKRN 215 >gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LA A S + FE LT RE+E L +++G + EIA L IS NTV +++S Sbjct: 138 LARLLAETRPSRQKAPAEPFEALTLREIEVLAMLADGLGNKEIARQLDISDNTVKFHLSS 197 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K R+ A+ +R+ + Sbjct: 198 IFGKLGATNRTEAVMLGMRHGFI 220 >gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L GR I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEGGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 238 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ +L +M++ DV Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMLTNLLHLSMYERVDVPAISCIG 174 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234 Query: 243 NNIV 246 ++ Sbjct: 235 FGLL 238 >gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 17/183 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDKY---------YNVLQRPTELF----CPVFHTLPENITP 122 +V P ++ + + D + +Q VF L Sbjct: 42 RLVDEHHPDVVLMDLRMPRMDGAEATGRIKAAHPEVQIVVLTTYSDDESVFAALKAGARG 101 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 D + +A +R G L P + L D L + Sbjct: 102 YLTKDAGGEEIAAAIAAVRDGAAQLAPDVQRRLVDALAS----GDKTDTSEPAKPPRTDL 157 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E LT I+ G+++ EIA L IS TV +I ++ K A + R+ A+ YA R Sbjct: 158 PDGLTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQAVTYAYR 217 Query: 243 NNI 245 + + Sbjct: 218 HGL 220 >gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 240 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 16/231 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + + R + + G ++ + +V + WP Sbjct: 8 EFMERCDNQKSVDNLFSDFGTVIAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQF 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVF--------------HTLPENITPPAGMDNRYCSLTFD 136 V + P + + D + FD Sbjct: 68 EGLNYFADDPVSRWSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPM-FD 126 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLT 195 + + L + ++ + ++ LL++Y A + + D LT RE E L Sbjct: 127 PNSWQSVISLATDDKGGLAKENIGDLYLLSSYCAMTANNLLRRAEQADHRLTDREKEILQ 186 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W+S GKT EI IL ++ +V +A I K R ++ A+R ++ Sbjct: 187 WVSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLI 237 >gi|304390336|ref|ZP_07372289.1| possible response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326092|gb|EFL93337.1| possible response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 221 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 14/196 (7%) Query: 57 GASHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFC 110 G + L R + Q++ V D + + L + + Sbjct: 33 GTASEALARLN--QDETAQPQVFLVDISMPGMNGIELVRRLHVLSPTSAVIMISVLTRAD 90 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 + T ++ + ++ + G ++ P L L + L A + Sbjct: 91 KIREAFRAGATGYFVKEDDPALIAENLGKALAGELVFSPTCSRQLISVLTDDAALVAVKR 150 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + D LT RE E LT +SE +T+ +IA L IS NTV +I SI++K Sbjct: 151 HAGEPSDTV------LTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDA 204 Query: 231 KTRSGAIAYAVRNNIV 246 R+GA+A+ +R I+ Sbjct: 205 ADRAGAVAHGIRQGII 220 >gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 8/111 (7%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--------DVHWGKDFELTGREVECLT 195 ++ G ++ D L E +A+ + F++ D L+ RE+E L Sbjct: 122 ILRRVAHGEYVINDVLLEEPRVASRILSQFRNLPEVQMLVGDPSIQVFTPLSEREIEVLE 181 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA LGIS TV N+I+SI+RK + R+ A+ +A+R + Sbjct: 182 RIAAGNSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 232 >gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 4/174 (2%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 + +V D ++ + + + L + F + Sbjct: 47 LIPDVVLMDIRMPVLDGLEATRRIATDPALSGVRVVVLTTFELDEYVFEAMRAGATGFLV 106 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + A + + ++ ++ + L+A + + + H + +LT RE E Sbjct: 107 KHTEPAELVRAVRVVADGDALLSPSVTRK--LVAEFATHAKRPP--HSSRLDDLTDRERE 162 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +T I+EG T+ EI L +S T +++ I+ K + R+ + A +V Sbjct: 163 VMTLIAEGLTNAEIGSRLFLSPATARTHVSRILLKLGARDRTQLVVMAYEWGLV 216 >gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 309 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 40/80 (50%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL + S + LT RE E LTW++ GK++ +I ILG+S TV+ ++ Sbjct: 226 LLLRVMEDNTLSPEQTLKTRLNLTSREAEVLTWVARGKSNRDIGEILGLSPRTVDKHLEQ 285 Query: 224 IMRKTATKTRSGAIAYAVRN 243 + K + R A A A++ Sbjct: 286 VYAKIGVENRVAATALAIQT 305 >gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8] gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8] Length = 215 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 31/182 (17%) Query: 69 FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 Q LD + + +WP V + + +D Y VF + Sbjct: 55 IQMPGLDGVQATQAILKEWPQAKVIMLTMYRQDAY-------------VFEAVKAGARGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 D L + R+ G + L + L + + Sbjct: 102 LLKDVDARELVDAIRRVHAG-------------EVLLDAELAGHIIQDFRAKKEASQPLH 148 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ REV+ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 149 AELSEREVQILRLVAQGYTNQEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIRE 208 Query: 244 NI 245 + Sbjct: 209 GL 210 >gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 269 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 38/253 (15%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-------------RWDLFQEQKLDSIV 78 L + + M + E +G FL + + +D Sbjct: 5 LFNDFSAIQNEGDLLLLMDNVVESLGLDGFLFAYAINGWLPSGEPGEIQRWLSKGIDKKS 64 Query: 79 SSDW--PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP----ENITPPAGMDNRYC- 131 W PFD ++ + + + P L EN ++ R+ Sbjct: 65 LKAWLAPFDRASRKDSDVNRRFDPIRRFMVQQTIPHQFLLTDIIKENKNEYTLVEKRWIN 124 Query: 132 -----------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VH 179 S+ + + F K + + L+ ++ D + Sbjct: 125 SLIKNNVVNLISIPVQLPPSEYWSLSFFSKNTRYQLESSDKARLMLFAHQLVYHCIDNLQ 184 Query: 180 WGKD------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W +D +LT RE +CL W ++GKT++EIA ILG+ T+ YI ++M++ +++ Sbjct: 185 WREDGMKYSIVKLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSK 244 Query: 234 SGAIAYAVRNNIV 246 + A+ A+ ++ Sbjct: 245 TQAVVKAIEFGLL 257 >gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 43/79 (54%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y + + + ELT REV+ L + EG ++ EIA L IS +T+ +++ +I Sbjct: 131 LVNYYRGREVNSIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 190 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 191 FRKLEVKNRTQATSWAKRN 209 >gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 245 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 80/243 (32%), Gaps = 31/243 (12%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 ++ L G +FL+ R + I++ P + Sbjct: 6 QFISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDGWLEVY 65 Query: 91 ALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPA-----------GMDNRYCSLT 134 + + V + + P LP + G+ Y + Sbjct: 66 RAKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGY-AFP 124 Query: 135 FDVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANMFKSYDVHWGKD 183 IG + + R + R W + L+ + DV Sbjct: 125 VHGRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVSA--- 181 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE+E L +++G TS EI L IS +TV+ YI I R+ + K R +A A R+ Sbjct: 182 LELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRH 241 Query: 244 NIV 246 ++ Sbjct: 242 GLL 244 >gi|319744296|gb|EFV96660.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 217 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E D L P + L P Y T Sbjct: 54 PDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 113 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A I + + + I + K++D LT RE + L Sbjct: 114 AAEILNAIRKVARGEQAIENE-----------VDKKIKAHDKCPALHEGLTARERDILNL 162 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + IA L IS TV ++++I+ K R+ A+ YA ++++V Sbjct: 163 LAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 212 >gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 221 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 18/214 (8%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + + E VG + D E + D ++ + + D Sbjct: 13 VRTGFRMVLNAQPDIEVVGEAGDGQAAIDALGEVEADVVLM---------DVRMPRMDGV 63 Query: 99 YNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 + P F + + + G+ ++ Sbjct: 64 EATRRICATPGAPRVLILTTFDLDEYAFAAIKAGASGFLLKDVPPNELVNGIRVVHSGDA 123 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 ++ LL + A+ + LT RE E L +++G ++ EIA L + Sbjct: 124 VVAPSTTRR--LLDRFAAH-LPDGQAGRPELDALTAREREVLILVAKGLSNQEIAERLHL 180 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ ++ K + R+ AI YA +V Sbjct: 181 AEATVKTHLGRVLAKLRLRDRAQAIVYAYETGLV 214 >gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] Length = 231 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 8/176 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGEEPVPDTLHTLTE 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 REVE L ++ G ++ EIA L +S TV ++ ++ K + R A YA + Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 >gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 102 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 52/101 (51%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +L + + + ++ L A + + LT RE E + W SEGKTS E Sbjct: 1 MLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSAE 60 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ILG+S +TVN++I + RK R +A A+RN +V Sbjct: 61 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 101 >gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 3/143 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + + ++ I+ L Sbjct: 81 PKVLVLTTFDLDEYIVEALRAGASGFLLKDVPPDELVQAIRVVAAGDAIVAPSVTRR--L 138 Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L + A + ++ + LT RE+E L I+ G ++ EIA L +S TV ++ + Sbjct: 139 LDRFGARLPSAHQQPTPARLDRLTEREMEVLRLIARGMSNAEIAAELVVSETTVKTHVGN 198 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R A+ A ++ Sbjct: 199 VLTKLGLRDRVQAVVLAYETGLI 221 >gi|302548366|ref|ZP_07300708.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302465984|gb|EFL29077.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 8/181 (4%) Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 E+ +V D +V + + + + + P + F Sbjct: 49 EVPPLVEELQPDVVLMDARMPIVDGIEATRRLR-ATSAEPPKVIVITTFENDEYVYDALE 107 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + + +I + L+ ++ + + + + Sbjct: 108 AGASGFIRKRAPAQQIAHAIRLVASGDSVLFPEAVARL-------TTGRPPRREAAARVA 160 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG T+ +IA +L +S TV ++ +++ K R+ A+ A Sbjct: 161 ALTRREAEILRLMAEGLTNQQIAEVLTVSLETVKTHVGNVLTKLGAGNRTQAVILAFEAG 220 Query: 245 I 245 + Sbjct: 221 L 221 >gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13] Length = 210 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 82/204 (40%), Gaps = 20/204 (9%) Query: 55 YVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDK---YYNVLQRP 105 +G + +L + D+ + D + P ++ + + E D ++++ Sbjct: 14 RIGVTAYLSAQPDIEVVAEADDGSVAIELALEHKPDIILMDLVMKEMDGIEATRRIMEQW 73 Query: 106 TELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 E + + ++ ++ Y T + I + + I+ + Sbjct: 74 PEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSKASEIANAVRSTYKGQSILEPE----- 128 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + ELT RE+E L +++GKT+ EIA L I+ TV +++ Sbjct: 129 ---VAGKMMQKMRRKTEILPHEELTNREMEILLLMTQGKTNQEIADELFIALKTVKVHVS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I+ K + R+ A+ YA ++++V Sbjct: 186 NILAKLQVQDRTQAVIYAFKHSLV 209 >gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] Length = 248 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 1/159 (0%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 +A+S D +Y + + P + + + +R M Sbjct: 82 RLAMSRPDPFYWSDAQDLDDLQPAEIAYLDKLKEAGIWPGIAFQVFGPESRNAAVGMCFE 141 Query: 149 PKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 P + D L E+ L + F D L+ RE+E L WI++GK++ +A Sbjct: 142 PGAPRLSPDALLELQLASQCAHQRFCALTDGPKSPYARLSPRELEVLRWIAQGKSNSVMA 201 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+GISR+TV+ + K R+ A + ++ Sbjct: 202 DIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISAGLL 240 >gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 222 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LA A + G+ FE LT RE+E L +++G + EIA L IS NTV ++++ Sbjct: 138 LARLLAGTRQPRQKASGEPFEALTSREIEVLAMLADGLGNKEIARHLDISDNTVKFHLSA 197 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K R+ A+ +R+ + Sbjct: 198 IFGKLGATNRTEAVMLGMRHGFI 220 >gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 226 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 2/162 (1%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + R + D VL ++ F L + R L + + G Sbjct: 64 EATRRIVAEHPDSRVLVLTTF-DVDDLAFAALRAGASGFLLKSARPDELVDAIRTVAAGT 122 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ P+ + D L+ L A + + + LT RE++ L I+EG ++ Sbjct: 123 SVVAPRVLRRMLD-LFAPHLPAGAEDGDPQERTGPHPRLRGLTPRELDVLRLIAEGASNA 181 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ ++ K + R A+ A +V Sbjct: 182 EIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGVV 223 >gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 220 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L+ L F + + + Sbjct: 49 DVVLMDIRMPVMDGIDATRTICADRGLEAVRVLVLTTFEEDAFIVGALRAGASGFLGKGS 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + I + + ++ L+ Y DV LT REVE LT Sbjct: 109 EPGEIIAAIRAVHGGEALLSPTATR--ALIDRYV--RPSPSDVVPQALEHLTEREVEILT 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++ EIA L IS +T ++ +M K R+ + A N +V Sbjct: 165 LVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAYENGLV 215 >gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 254 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 7/146 (4%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + V+ + + + Y S + L + +I L + + Sbjct: 88 VVLSVYESDEQAFNALRAGASAYRSKDVHPDELADVLRRVARGEYVINDVVLDDPKVAGR 147 Query: 168 YQANMFKSY-------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + ++ + L+ RE+E L I+ G ++ EIA L IS TV N+ Sbjct: 148 VLSQFRNLPQDVTSLQEMEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNH 207 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 I+SI+RK + R+ A+ YA+R + Sbjct: 208 ISSILRKLSLNDRTQAVLYALRRGWI 233 >gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 238 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L GR I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 141 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 197 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 198 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 237 >gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 137 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 168 YQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A M + D + +LT RE E L W GKT+ EI+ ILGIS T+ ++++ Sbjct: 57 VHAAMQELLDCRLRRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAA 116 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK R+ A+ A ++ Sbjct: 117 RKIGANNRAQAVVMASARGLI 137 >gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 10/174 (5%) Query: 78 VSSDWPFDLVRCMALSEKDKYYN-----VLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 V+ P +V + + D L P + + ++ Sbjct: 55 VAEHSPDVVVMDLRMRNVDGITATSMLAALNDPPPVLVLTTFDDDKLLSGALRAGAAGFI 114 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L A L++ ++ + + +S ELT RE + Sbjct: 115 LKDSPAES-----LIWAVRAVVRDGAFLDPAVTGRVLTGYRRSTTGDIATPDELTERETD 169 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G+T+ EIA LGIS TV ++I I K + R+ AI YA +++V Sbjct: 170 VLRLVARGRTNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIVYAFDHSLV 223 >gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 216 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 79/217 (36%), Gaps = 5/217 (2%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + L + + + Q +L + D +R + Sbjct: 1 MIRILLVDDQTLVRQGIQTLLDLEEDLTVVGAAANGQQALELAEQLQPDVVLMDIRMPVM 60 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFP 149 + +R ++ + T ++ G+ Y D I + ++ Sbjct: 61 DGVAATREITRRWPQIGVIILTTFDDDEYVIEGLKAGARGYMLKDADSHEIVEAVRIVTR 120 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +I ++ A + LT RE++ L I+ GK++ EIA Sbjct: 121 GEALIQPSITRKVLAEFTRLAGGHTPVTSPLTEP--LTEREMDVLHGIAAGKSNREIADQ 178 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV N+++S++ K + R+ AI A ++ Sbjct: 179 LCISEGTVKNHVSSLLAKLDVRDRTQAIIRARELRLI 215 >gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] Length = 236 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + +L V + G + PK L + +++ Sbjct: 98 VTHVLKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESS 157 Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +V + K LT RE E L +++G ++ I L IS TV N++++I++K Sbjct: 158 EIGFKEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNV 217 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ +++N Sbjct: 218 NDRTQAVVESIKNG 231 >gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis] Length = 236 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + +L V + G + PK L + +++ Sbjct: 98 VTHVLKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESS 157 Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +V + K LT RE E L +++G ++ I L IS TV N++++I++K Sbjct: 158 EIGFKEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNV 217 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ +++N Sbjct: 218 NDRTQAVVESIKNG 231 >gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 216 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 10/213 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + + ++ E VG + Q ++ D +V D + + Sbjct: 7 LVEDHHIVRRGLIFFLKTREEFEIVGEAENGEDALTFVQTKRPD-VVLMDLSMPKMDGIE 65 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +++ K Y+ + L F + + Y ++ ++ + Sbjct: 66 ATKRIKQYDETIKI--LILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAVHEGN 123 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 LL K LT RE E L I++G+++ EIA +L Sbjct: 124 TNFHPK--VTPALLGRSVVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAVLH 176 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+ TV ++++I+ K R+ A YAV++ Sbjct: 177 ITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 208 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE+E L +S+G ++ EIA L IS TV +I +I+ K K R+ A+ A++ Sbjct: 142 DSDLTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALK 201 Query: 243 NNI 245 + Sbjct: 202 KGL 204 >gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 234 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE + L W ++GKT+ EI++IL IS +TVN ++ +I+ K T + A+A A Sbjct: 171 DPTLTQRETDVLKWTADGKTAYEISLILSISESTVNFHVKNIVAKLGTANKVHAVAKAAL 230 Query: 243 NNIV 246 ++ Sbjct: 231 MGML 234 >gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 246 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 20/191 (10%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 + R + + + + + PF MA + D + +R ++ Sbjct: 68 VARKYVLVDPTMRYLGQAQRPFRWRDAMAALKGD---PLRRRMEQMM---------ADAR 115 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------NMFKS 175 G+ + Y +G M + + L +A + + Sbjct: 116 ANGLVDGYI-FPIFGRSGLLGTMTIGGNSVDLSPAELSLFDAVAKKVFWRLLELRDEARP 174 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + + +LT RE+E L ++EG TS +I+ L IS +TV+ Y+ SI K + R Sbjct: 175 LEEAPAIEAKLTRREIEVLNHLAEGMTSMDISRTLKISNHTVDWYMNSIQDKLNARNRQH 234 Query: 236 AIAYAVRNNIV 246 +A A RN +V Sbjct: 235 IVAIAFRNGLV 245 >gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 222 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 40/80 (50%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A N F L+ RE+E L W+++G EIA L +S TV N+I+ I+ Sbjct: 133 AGKLLNCFSEDTSRERGMSRLSERELEVLYWLAQGLNGQEIAERLSLSDKTVKNHISHIL 192 Query: 226 RKTATKTRSGAIAYAVRNNI 245 K R+ A+A+A R+ + Sbjct: 193 AKLKVSDRTQAVAWAWRSGL 212 >gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 209 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 13/159 (8%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147 + + + + + + + E+ +D + Y T I + Sbjct: 60 DMDGVEATTQIKKEMPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIAEAVRKT 119 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 120 YHGESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIA 169 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-003] Length = 117 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 54 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 112 >gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 240 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L GR I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 209 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 11/165 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141 D V + + + Q P V + ++ PA Y T + +I Sbjct: 53 MDNVMPIKTGAEATAEILAQWPQAKVMIVTSFIDDDKLYPALEAGAVSYILKTSNAKQIA 112 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + ++ + + M + LT RE+E L ++ G Sbjct: 113 DAIRKTMDGETVLEPEATTRV---------MARMRGTAPALHNHLTDREMEVLLCMARGL 163 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L I+ TV ++++I+ K + R+ A+ YA +N +V Sbjct: 164 ANQEIAEELFIALKTVKTHVSNILSKLEVQDRTQAVVYAFQNGLV 208 >gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 241 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + L + + G + PK I L + ++ Q N Sbjct: 104 VSSALKTGAVGYLLKEMDANELIEAIKVVYKGGAYIHPKAAIKLIREYRNLASSSSAQGN 163 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++GK++ I L IS TV N+++SI++K Sbjct: 164 YGYRQPEVNMPLHLLTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVN 223 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A+++ Sbjct: 224 DRTQAVVTAIKHG 236 >gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 217 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 12/170 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPA---GMDNRYCSLTFD 136 P ++ + L D +++ E + V + E A + YC Sbjct: 51 PQLVLLDIGLPGLDGRQTLVRLKQEHPEIRVLVLTSREEAGLVQAMLQAGADGYCLKGIG 110 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 R+ + + + +LA ++ + LT RE E L W Sbjct: 111 PDRLLTVIREVSAGNGWF------DAKVLAQVRSAFAVAPSEPPANAAALTEREREVLGW 164 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EI L IS TV ++ +I+RK R+ A A+ ++ Sbjct: 165 IARGASNPEIGRQLHISSGTVRVHVHAILRKLGATDRTQAAVLALEKGLI 214 >gi|326331827|ref|ZP_08198114.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] gi|325950324|gb|EGD42377.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 58/171 (33%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + + L+ L F + + + Sbjct: 50 DVVLMDIRMPVMDGIEATSTIRADGDLESTRVLILTTFEEDEYLLAALRAGADGFIGKGA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + I G++ + ++ + + ELT RE E L Sbjct: 110 EPDEIVRGVLAVRDGKSLLSPAATRSLISRYLKVDRRATGGRFDARRLEELTPREREILV 169 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L IS T ++ ++M K R+ + +A + +V Sbjct: 170 LVAGGLSNQEIADELVISPFTAKTHVNNMMTKLDAPGRAQLVIWAYESGLV 220 >gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 240 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 14/167 (8%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY-CS 132 S++P + ++ V+ P F P T + Sbjct: 56 SNYPNEWSHLYKQAKFADVDPVVAHCQRSVLPFVWKETAFQGTPHLWTLAQSCGVHLGWT 115 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------- 185 R ++ L R I + L+E A + + + H + Sbjct: 116 QPLHGPRGVFSMLTLSRSKREISPEELYEKAGNALWLCHAMHTVVAHKYANEPDAVPCNN 175 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE+E L W + GKT+ EIA IL +S TV + S MRK Sbjct: 176 LTPRELEVLRWSALGKTAGEIAKILCLSERTVGFHNCSSMRKLGVNN 222 >gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] Length = 201 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ REVE L W + GKTS EIA ILG+S+ TV+ +I + +K TR A+ A Sbjct: 137 VPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSA 196 Query: 244 NIV 246 I+ Sbjct: 197 GII 199 >gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911] gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 20/203 (9%) Query: 55 YVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL----QR 104 +G S +L + D + + P ++ + + E D Sbjct: 14 RIGVSSYLSAQPDIEVIGEADNGRTAIDLALELRPDIILMDLVMKEMDGIEATRGIIEAW 73 Query: 105 PTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P V L + PA Y T + I + F ++ + ++ Sbjct: 74 PEAKVIIVTSFLDDEKVYPALEAGASSYMLKTSKASEIADAVRATFHGQSVLEPEVTGKM 133 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + + + ELT RE+E L ++EGKT+ EIA L I+ TV +++ Sbjct: 134 MVKMRQKQTVLP--------HEELTSREMEILLLMTEGKTNQEIADELFIALKTVKTHVS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +I+ K + R+ A+ YA ++++ Sbjct: 186 NILSKLQVQDRTQAVIYAFKHSL 208 >gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 67/179 (37%), Gaps = 15/179 (8%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDN 128 ++ + P ++ + + D + + ++ P F N Sbjct: 68 PLIRENTPDVVIMDIRMPRVDGLAAIREILADVADPPKILVLTTFELDDYVYEALRSGAN 127 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELT 187 + A I + + ++ + + Y A + + H + LT Sbjct: 128 GFLLKRARPAEIVQAVRTIVSSESLLFPEAIR-------YMAGKRPNREAHETMRRAVLT 180 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE + L ISEG +++EIA L + TV ++++S++ K + R+ A+ A + V Sbjct: 181 DREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGFV 239 >gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 246 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV +L+ RE ECL WI+EGK++ I+ +L IS TV +I ++ K TR Sbjct: 175 PDVETTLRPKLSRREHECLKWIAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQ 234 Query: 236 AIAYAVRNNIV 246 A V ++ Sbjct: 235 AAVVGVLMGLI 245 >gi|90415637|ref|ZP_01223571.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium HTCC2207] gi|90332960|gb|EAS48130.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium HTCC2207] Length = 302 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + + F LT RE E LTWIS+GKT+ EIA+IL S T N ++ I RK + R Sbjct: 228 PNDEELLREKFGLTAREAEVLTWISKGKTNHEIAIILDFSPRTANKHLEQIFRKLNVENR 287 Query: 234 SGAIAYAVR 242 + A A ++R Sbjct: 288 TTAAAVSLR 296 >gi|262201875|ref|YP_003273083.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085222|gb|ACY21190.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 218 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + +S K LT RE E L +++G ++ I L IS +TV +I +I+RK Sbjct: 141 AAIVLRSVSGDVDKPEALTDREREVLRLLADGLSNKRIGQTLFISESTVKFHIRNIIRKL 200 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+ A + ++ Sbjct: 201 GVSKRTDAVYIASKRGLI 218 >gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 12/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141 D+V + + + Q P V L ++ PA Y T +RI Sbjct: 53 MDMVMPIMNGAEATKAIIEQWPEAKIMIVTSFLDDDKVYPALQAGAVSYILKTSKASRIA 112 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + ++ + + + M K +LT RE+E L ++ G Sbjct: 113 DSIRETMNGTPVLEPEVMTK----------MMKQMRHERVLHDDLTEREMEILLLLARGL 162 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ E+A L I+ TV ++++I+ K R+ A+ YA ++ ++ Sbjct: 163 TNQEVADQLFIAVKTVKTHVSNILAKLEVHDRTQAVIYAFQHKLI 207 >gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 228 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 5/173 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ + + + +V P L F+ + + Sbjct: 53 DVVVMDIRMPLLDGIQATRRLAGPDVADPPKVLVVTTFNVDAYVYDAFRAGASGFLLKDA 112 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192 A + G+ + ++ L+ + + ++ LT RE+E Sbjct: 113 PPAEMVNGVRTVARGESLLAPAVTR--TLIGRFAERLRPGDPARAAREAVTRTLTPRELE 170 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+EG ++ EIA L I+ TV Y++ I+ K + R A+ A R + Sbjct: 171 VFELIAEGLSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYRIGL 223 >gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 241 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 2/162 (1%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + R + ++ VL +L F L + D L + I G Sbjct: 65 EATRRIMAADPQARILVLTTF-DLDEYAFAALRGGASGFLLKDAPVAELVHAIRVIAQGH 123 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 L+ P+ +L D + L + G LTGRE E L ++ G+++ Sbjct: 124 ALVAPRITRLLLDA-YAPQLPDPLAGDRPGPDRAVVGPGGSLTGREHEVLLLLARGRSNA 182 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV +++ +++ K + R A+ YA + ++ Sbjct: 183 EIATDLVVSEVTVKSHVGAVLHKLDLRNRVAAVIYAYEHGLI 224 >gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 239 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 + + P + +L F + L + F ++ DR+ E+ ++ + Sbjct: 111 TDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSGVV--DRVREVVAASSAACSRVVGD 168 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 V + L+ RE++ L ++ G + EIA L +SR TV ++ +I KT T +R A Sbjct: 169 QVALDR-VHLSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQA 227 Query: 237 IAYAVRNNIV 246 A + ++ Sbjct: 228 AVRAAKWGLI 237 >gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family [Leptospirillum sp. Group II '5-way CG'] Length = 211 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F + D SL + +G + L P + +R+ G Sbjct: 92 IFSSFSAGADGYCLKDTTVDSLLLAIRAADMGSVYLDPAIAHLALNRIRLPG-------- 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 H D L+ RE E L +S+G ++ EI I GIS +TV +I SI+ K + Sbjct: 144 -------HPENDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSAS 196 Query: 232 TRSGAIAYAVRNNIV 246 TR+ A A++ ++ Sbjct: 197 TRADAAVKAIKKGLI 211 >gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 240 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 R I ++ + I L ++ + LT RE+E L W +GKT+ EI++I Sbjct: 147 ERAISAEQKYLISSLMPVLHSVARGLKFSSR---GLTHRELEVLQWARDGKTAWEISMIR 203 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 204 EVSESTVKFHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 201 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ REVE L W + GKTS EIA ILG+S+ TV+ +I + +K TR A+ A Sbjct: 137 VPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSA 196 Query: 244 NIV 246 I+ Sbjct: 197 GII 199 >gi|315657544|ref|ZP_07910426.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492016|gb|EFU81625.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 221 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 T ++ + ++ + G ++ P L L + L A + + Sbjct: 94 EAFRAGATGYFVKEDDPALIAENLGKALAGELVFSPTCSRQLISVLTDDAALVAVKRHAG 153 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + D LT RE E LT +SE +T+ +IA L IS NTV +I SI++K R Sbjct: 154 EPSDTV------LTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADR 207 Query: 234 SGAIAYAVRNNIV 246 +GA+A+ +R I+ Sbjct: 208 AGAVAHGIRQGII 220 >gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 217 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 8/162 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGL 144 ++ + E + + +++ + + P Y + + Sbjct: 58 VMPGIDGVETTRRIKAVSPSSQVIVLTSFADDDKVFPAIKAGAISYLLKDISPEELAHAI 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ +AA F + + +LT RE++ L +++G ++ Sbjct: 118 RAARRGEAVLHP-------AVAAKLMQEFNTPRPNEPPVEQLTPREMDVLRLVAKGMSNK 170 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV +I++I+ K R+ YA+R +V Sbjct: 171 EIADTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212 >gi|331266987|ref|YP_004326617.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683659|emb|CBZ01277.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P +V + + E + L + P V L P Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAG---------- 96 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTW 196 R ++ ++ R G LA Q K + H ELT RE + L Sbjct: 97 -ARGYMLKTSSADELLNAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 240 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L GR I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] Length = 215 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 69/175 (39%), Gaps = 13/175 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR---Y 130 + S P ++ + + E D + + ++ + + + M+ Y Sbjct: 42 LAESIQPDIILMDLVMPEMDGIQATKRIKAKFPQIEILMLTSFSDRDHVVPAMEAGAAGY 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + + + + + + + + +S + + LT RE Sbjct: 102 QLKDIEPDELVLSIRRIMRGENTLHPEA------TTTLEMDRQESQNAPHLLN-PLTPRE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L +++GK++ EIA L ++ TV +I++I K + R+ A YAV++ + Sbjct: 155 QDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 11/179 (6%) Query: 77 IVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 + S+ P +V + + D L L F T + Sbjct: 43 LTSAHAPDVVVMDIRMPGTDGLAATSAICTDPELSATRVLILTTFETDEYVARALRAGAS 102 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187 + + G+ + ++ L+ + A + + LT Sbjct: 103 GFLGKDVGADELLTGIRTVASGDSLLSPVATR--ALITRFLAAPDPEAPLAPSELLASLT 160 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E + +EGK++ EIA +L +S TV ++ M K + R+ + A ++ +V Sbjct: 161 AREREVMALAAEGKSNAEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGLV 219 >gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 274 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 14/181 (7%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 +++ ++SS P +V L +KD + + E P +N Y Sbjct: 85 EEMRDVISSLRPDVIVYDDELLDKDSIGPIRELSKEFT-------PFRCVLLTSKENNYH 137 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-------DVHWGKDF 184 ++ + I +L L + + Y ++Y + + + Sbjct: 138 DRLQNLRKSGIYGCILKSSKAEDLLSAIRNVAKADPYNDPRLETYKKTVSLIEEDTAQLY 197 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L W+S+G ++ IA I+ +S TV N+++ I++K R+ A +A + Sbjct: 198 HLTPREKEVLYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDRTQAAVFAWKAG 257 Query: 245 I 245 + Sbjct: 258 L 258 >gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] Length = 201 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ REVE L W + GKTS EIA ILG+S+ TV+ +I + +K TR A+ A Sbjct: 137 VPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSA 196 Query: 244 NIV 246 I+ Sbjct: 197 GII 199 >gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 6 str. 870] Length = 235 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231 Query: 243 NNIV 246 ++ Sbjct: 232 FGLL 235 >gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] Length = 227 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 PE T + + G++ + G+ I D + + +A + Sbjct: 94 PETRTLVFLHRETQAVVREALDAFAEGVIFISSLGKGIDGDFIRSLSAIAEGGNYYPQDV 153 Query: 177 DVHWGKD-----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G + EL+ RE+E L +S G T+ EIA L +S TV +++SI+ K K Sbjct: 154 QTAAGYERIEVLPELSEREIEVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVK 213 Query: 232 TRSGAIAYAVRNNI 245 R+ A+ A++ I Sbjct: 214 DRTQAVIKAIKAGI 227 >gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y D + + + I + L A A + LT Sbjct: 102 GYILKDIDPQALVEAVRAVSRGETYI------QPTLTRALIAEYNRLSQPISRASRPLTA 155 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E + +I+EG ++ EI+ LGIS TV N+++SI+RK R+ YA++NN+V Sbjct: 156 REKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSSILRKLNLMDRTQVAVYALKNNLV 213 >gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 16/161 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + +R + ++ TE V L D +L + + G Sbjct: 67 EALRRLRDLGNAARVLIVTSFTEQRT-VVPALRAGAAGYVYKDVDPEALAGAIRSVHAGH 125 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LL P+ LL+ +A G+ LT RE E L I++G+++ Sbjct: 126 ILLQPE---------VAGALLSQEEAQ------SGLGRGGSLTEREREVLGLIADGRSNR 170 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 211 >gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 239 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 + + P + +L F + L + F ++ DR+ E+ ++ + Sbjct: 111 TDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSGVV--DRVREVVAASSAACSRVVGD 168 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 V + L+ RE++ L ++ G + EIA L +SR TV ++ +I KT T +R A Sbjct: 169 QVALDR-VHLSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQA 227 Query: 237 IAYAVRNNIV 246 A + ++ Sbjct: 228 AVRAAKWGLI 237 >gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] Length = 212 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDV 178 + R RIG + + R + + E G + A A + Sbjct: 88 ARAGLIVPLPDQRGRIGAITMLSAQREDYPEDIAEAGRIVALAVLVRAGSLAPAVGAVSP 147 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R+ A+ Sbjct: 148 ALASLAQLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 206 >gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 90 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 45/87 (51%) Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LL+ + A + D LT RE+E L +++G + +IA L IS NTV N Sbjct: 1 MASKLLSEFAAMIKTKDDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKN 60 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I +I+ K +R A+ YAVR ++ Sbjct: 61 HIRNILEKLQLHSRMEAVVYAVREKLL 87 >gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 21/207 (10%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA-----LSEKDKYYNVLQ 103 M AL + G F + S P V + +S D + Sbjct: 22 MRALDQEDGFHCLG-----GFGSCEDAFAALSRQPAPQVVLLDVGLPGMSGLDGIARFRE 76 Query: 104 RPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 + + V + Y T V I + G + Sbjct: 77 QAPQARIIVLTVFEDEDKIFRAICAGAAGYLLKTAPVEEIARAIRDALAGGAPMN----- 131 Query: 161 EIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 G +A +MF + D+ LT RE + L + +G+T EIA L +S +TV+ Sbjct: 132 --GRIARRVLDMFARFAPTRGDGDYGLTTRETQILEAMVKGRTKKEIAAQLDLSFHTVDT 189 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I +K TR+GA+A A++ +V Sbjct: 190 HLRNIYQKLEVNTRTGAVAKALKEKLV 216 >gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21193] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 13/159 (8%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147 + + + + ++ + + E+ +D + Y T I + Sbjct: 60 DMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVHKT 119 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 120 SSGESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIA 169 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 240 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L GR I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 193 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + + + + + + +++ +LT RE E L I++GKT+ E Sbjct: 92 FVAAVRQALRGETFINGSMTVQLLQRLATTHESSSPPRIQLTRREQEVLQLITQGKTNRE 151 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I +L IS TV ++ I+ K R+ A A+ ++ Sbjct: 152 IGQLLNISVGTVKIHVEHIIAKLGVSDRTQAAVRAIDLGLL 192 >gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 +D R++ D + + L E +G F+LV + ++ + + P ++ Sbjct: 4 TDKPLRILVADDHLVVRKGLRLLLEEMG-EGFVLVGEAVDGKEAI-RLTDELQPDVVLMD 61 Query: 90 MALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIG 143 + + D + Q P + + T ++ G+ C L A Sbjct: 62 IRMPGMDGLEAIEQIHWSWP-HVAVVILTTYTDDEALLRGLQAGACGYLLKETSAETLFH 120 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202 + +G +L+ + L +++ S G ELT RE L ++ G+ Sbjct: 121 AIRTAARGEFLLQPEIMARILAQTHRSVPNSSPGAPSGNSTVELTERERAILIAVAHGER 180 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S EIA LG+S TV ++ +I K +R+ A+A A+ ++ Sbjct: 181 SKEIAQHLGVSERTVKAHLTNIYTKLNVDSRASAVASALERGLL 224 >gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D +L + + G ++L P+ LL+ +A Sbjct: 98 VVPALRAGAAGYVYKDVDPEALASAIRSVHAGHVVLQPE---------VADALLSQDEAG 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G+ LT RE E L I++G+++ EIA L +S TV ++++I+ K Sbjct: 149 ------GGQGRGGSLTDREREVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLA 202 Query: 232 TRSGAIAYAVRNNI 245 R+ A +AVR+ I Sbjct: 203 DRTQAALWAVRHGI 216 >gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 232 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSLTFD 136 P +V +A+ D + + ++ V L + + Y + Sbjct: 57 PDVVVMDLAMPGVDGLEATRRIKEEHPQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSP 116 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + R+ L L + ++ L A + ELT RE E L Sbjct: 117 LPRVISALRRLLSGESPLNQE---LAARLIQDLARRPGGGGNPPPAE-ELTAREREVLVL 172 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G+T+ EIA L ISR T +++ +I+RK R+ A+A A ++ Sbjct: 173 MARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARAFELGLI 222 >gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family [Tepidanaerobacter sp. Re1] Length = 215 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + L A A + D LT RE E L I++G ++ EI++ LGIS TV Sbjct: 128 QPNLTRALVAEYNRLTQPVSNNDVRKNLTAREKEVLADIAKGMSNREISIDLGISEKTVK 187 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 N+++SI+RK R+ A +A++N +V Sbjct: 188 NHVSSILRKLNLMDRTQAAVFAIKNRLV 215 >gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 9/153 (5%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152 E + L P + T + P Y D + + + Sbjct: 70 EALRRLRGLDNPARVLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHV 129 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 ++ + + LL+ +A G+ LT RE E L I++G+++ EIA L + Sbjct: 130 LLQPE--VALALLSQEEAG------GGQGRGGSLTEREREVLALIADGRSNREIARALIL 181 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S TV ++++I+ K R+ A +AVR+ I Sbjct: 182 SEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 214 >gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 201 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E LT I+ GK++ EIA L +S TV +I ++ K + R+ A+ YA+R Sbjct: 140 DLTPREAEVLTLIARGKSNTEIAGELFVSAATVKTHINNLFAKIGVRDRAQAVRYALRRG 199 Query: 245 I 245 + Sbjct: 200 L 200 >gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580] gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580] Length = 217 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K +LT RE + L I++GK++ EIA L IS TV ++++++ K R+ A +A Sbjct: 146 EKIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFA 205 Query: 241 VRNNI 245 V++ + Sbjct: 206 VKHGL 210 >gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] Length = 195 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 11/134 (8%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + P +D R +L+F AR + RDR I L + Sbjct: 72 FGLVEGFVIPITTLDQRIAALSFGGAR-----------DDLSNRDRSALIFLANFAIGHW 120 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L+ RE++CL W EGKT EI+VILGISR+TV +I S K Sbjct: 121 LYLRRPRPTCNKTLSPRELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVN 180 Query: 233 RSGAIAYAVRNNIV 246 + AIA A+R I+ Sbjct: 181 KPHAIAIAMRLKIL 194 >gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ +A + L + F + Sbjct: 50 DVVLMDIRMPVLDGLAATRTIAADPALTDVRVVVLTTFELDEYVFEAMRAGATGFLVKHT 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + ++ ++ L+ + A+ + ELT RE E + Sbjct: 110 EPADLVRAVRVVAAGDALLSPGVTRR--LITEFAAHAKQPPPAALA---ELTDREREVMA 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG T+ EI L +S T +++ I+ K + R+ + A + +V Sbjct: 165 LVAEGLTNAEIGARLYLSPATARTHVSRILTKLGARDRTQLVVLAYESGLV 215 >gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 237 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVH 179 N Y + G+ +F +I L E ++ ++ + + Sbjct: 109 RAGANGYLLKDVPPEEVAAGIRGVFHGQSLISPMMASKLLQEFAQMSRHEGTVPAATPEL 168 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE+ L ++ G+ + EIA L IS NTV N+I +I+ K +R A Y Sbjct: 169 ELPR--LTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMY 226 Query: 240 AVRNNIV 246 AVR ++ Sbjct: 227 AVRKRLI 233 >gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 218 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 6/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIG 143 VR ++ +L+R + + T + + + Sbjct: 56 VRMPEMNGLQAAEEILRRHDGVRVLMLTTFDIDDYVYEALRVGASGFMLKDAPAEELVRA 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ ++ + + + G LT RE E L ++ G+++ Sbjct: 116 VRVVHEGQSLLAPSVTRRMIAEVTAARSRRRPAPAELGT---LTPREREVLEAVAAGRSN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV +++ +++K + R+ A+ YA +V Sbjct: 173 AEIAETLFVSEQTVKTHVSKVLQKLGLRDRAQAVVYAYETGVV 215 >gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 221 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 84/215 (39%), Gaps = 11/215 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ +++ +D + AL E + + ++ + ++ ++V+ P ++ + Sbjct: 1 MMIKVLLVDDQGLIRQGLRALLE-LESDLEIVGEAENGEQAI--NLVAEFQPDVVLLDIR 57 Query: 92 LSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLM 145 + D + +R ++ V T ++ A + N Y + + + Sbjct: 58 MPIMDGVAATKEIQKRFSKTKILVLTTFDDDEYVSAALQNGAMGYLLKDTPSEELAVAIR 117 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 ++ + + + LL + ELT RE E L I+ G ++ E Sbjct: 118 AVYKGYTQLGPGIVKK--LLTQFSNGTPIHSTPVPSTLNELTPREKEVLRLIATGASNRE 175 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 IA L IS TV N++ +I+ + R+ A +A Sbjct: 176 IAQELYISEGTVKNHVTNILNTLNLRDRTQAAIWA 210 >gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 16/169 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D L+R EL P F + + Y Sbjct: 52 PDVVLMDIKMPGTDG-IEALRRLRELDNPAKVLIVTSFTEQRTVVPALRAGASGYVYKDV 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + LLA A G+ LT RE E L Sbjct: 111 DPDALAGAIRSVHAGHVLLQPE--VAGALLAQDDA------GTGTGRGSTLTEREREVLG 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I++G+++ EIA +S TV ++++I+ K R+ A +AVRN Sbjct: 163 LIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWAVRNG 211 >gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 471 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L ++ G T+ +IA L IS NTV ++ +I K +R+ A YAVRN Sbjct: 8 QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRNG 67 Query: 245 IV 246 ++ Sbjct: 68 LL 69 >gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 248 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++++ RE EC+ WIS+GKTS EI ILG S+NTV+ ++ ++MRK T R+ A AV Sbjct: 184 YKISDRERECIHWISKGKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVEL 243 Query: 244 NIV 246 I+ Sbjct: 244 GII 246 >gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] Length = 238 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234 Query: 243 NNIV 246 ++ Sbjct: 235 FGLL 238 >gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 71/198 (35%), Gaps = 18/198 (9%) Query: 54 EYVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 +Y+ + +V E ++ D + + + + Sbjct: 22 DYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGYTFVQTIRSNSATDWIPV 81 Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 +F + + + Y F+ + + + +L+ Sbjct: 82 IFLSARGQTADRVRGLNTGADVYLVKPFEPEELVAQVESVLKHTERLLQ----------- 130 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 N + ++ ELT E + + +++ G ++ EIA ++G+S+ TV +++++++ K Sbjct: 131 -MQNAVIQPVIKLDREIELTPTEAKVIQYVARGMSNREIAEVMGVSQRTVESHVSNMLSK 189 Query: 228 TATKTRSGAIAYAVRNNI 245 T R+ +A+ + + Sbjct: 190 TGLHNRTELARWALESGL 207 >gi|282866538|ref|ZP_06275581.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558585|gb|EFB64144.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 220 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R + IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGMAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|56964850|ref|YP_176581.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] gi|56911093|dbj|BAD65620.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] Length = 235 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170 V H L + + SL V + G + PK ++++ YQ Sbjct: 97 VSHVLRTGASGYLLKEMDAESLVEAVKVVASGGAYIHPKVTSNLIKEYRRLARQDEQYQD 156 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + LT RE E L +++G+ + I L IS TV N++++I++K Sbjct: 157 SIGFREVEYRKPLHILTRRECEVLQLMTDGQNNRAIGESLYISEKTVKNHVSNILQKMNV 216 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ +++ V Sbjct: 217 NDRTQAVVESIKKGYV 232 >gi|328882352|emb|CCA55591.1| hypothetical protein SVEN_2305 [Streptomyces venezuelae ATCC 10712] Length = 598 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 9/111 (8%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + AR+ +G + + D LL LT RE E L Sbjct: 497 EGARLELGAARAAFERLGAVPDARRAAALLTGGSRRRLPG---------GLTAREAEVLR 547 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG T+ +IA L IS +TV ++ +I K +R+ A AYA + +V Sbjct: 548 LVAEGGTNKDIARTLVISEHTVARHLNNIFAKLGVGSRASATAYAYAHGLV 598 >gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 19/184 (10%) Query: 80 SDWPFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLP----ENITPPAGMDNRYC 131 + P ++ + + E D Y + + E VF T + I + Y Sbjct: 47 KNPPDLVISDIMMPEVDGYQFLKKLRENQRYETIPVVFLTARGMTSDRIQGYNAGCDAYI 106 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------- 183 S FD + + L + ++ + ++ LA ++ + + + Sbjct: 107 SKPFDPEELEAIVKNLLERRKVNSQGN-ADVAQLAEIAQDIREIKEKLGHTENLTTTPPP 165 Query: 184 --FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+ Sbjct: 166 IKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVRFAL 225 Query: 242 RNNI 245 ++ + Sbjct: 226 KHGL 229 >gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] Length = 238 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234 Query: 243 NNIV 246 ++ Sbjct: 235 FGLL 238 >gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 247 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 14/171 (8%) Query: 83 PFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTL-PENITPPAGMDNRYCSLTFD 136 P +V + L D + + HTL E + + + YC Sbjct: 84 PDLVVMDIGLPRLDGIAATKQIKEQEPNIHVVMLTSHTLQTEVVAALSSGADAYCIKGAS 143 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195 + R L + +A + KS + ++ L + RE+E L Sbjct: 144 LER-------LLAAIEAAQDGATYLDPQIARLVLDNLKSPNPEPNQNIALLSERELEVLK 196 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ +V Sbjct: 197 LIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 247 >gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis biovar Abortus 2308] gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445] gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 3 str. Tulya] gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5 str. 513] gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3 str. 686] gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M163/99/10] gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis B2/94] gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti M644/93/1] gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti M13/05/1] gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 4 str. 292] gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M292/94/1] gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae 5K33] gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 3 str. Ether] gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti M490/95/1] gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti B1/94] gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 9 str. C68] gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99] gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella suis 1330] gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella abortus bv. 1 str. 9-941] gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding domain [Brucella melitensis biovar Abortus 2308] gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445] Length = 235 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231 Query: 243 NNIV 246 ++ Sbjct: 232 FGLL 235 >gi|293364822|ref|ZP_06611539.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703071|ref|ZP_07640018.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316272|gb|EFE56708.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623464|gb|EFO02454.1| response regulator [Streptococcus oralis ATCC 35037] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGK 201 ++ ++ R G LA Q K + H ELT RE + L I++G Sbjct: 101 MLKTSSADELLHALRKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAKGY 160 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 161 ENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 2/147 (1%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 + P L F + + A + + ++ ++ Sbjct: 58 EGVSGPRVLMLTTFDVDDYVYEALRSGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVT 117 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+A + A + ELT RE E L I++G ++ EIA L ++ TV Sbjct: 118 RR--LIADFAARHPAPRKGTGHRPKELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKT 175 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I I+ K + R+ A+ +A + +V Sbjct: 176 HIGRILAKLRLRDRAQAVIFAYESGLV 202 >gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2] gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K +LT RE + L I++GK++ EIA L IS TV ++++++ K R+ A +A Sbjct: 146 EKIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFA 205 Query: 241 VRNNI 245 V++ + Sbjct: 206 VKHGL 210 >gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 224 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + + + + G L PK + ++ + E L+ ++ Sbjct: 90 VTHALKSGALGYMLKEMDADEIVEAIKVVSNGGSYLHPK---VTKNLVAEFRRLSEHENK 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++G+++ I L IS TV N+++SI++K Sbjct: 147 GNFHQTEIRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVN 206 Query: 232 TRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 207 DRTQAVVTAIKNG 219 >gi|309799719|ref|ZP_07693936.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116675|gb|EFO54134.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197 R ++ ++ R +G LA Q K + H +LT RE + L I Sbjct: 97 ARGYMLKTSSADELLHAVRKVAVGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLI 156 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205 >gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 211 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 78/215 (36%), Gaps = 10/215 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + + ++ E VG + Q ++ D +V D + + Sbjct: 7 LVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVQTKRPD-VVLMDLSMPKMDGIE 65 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +++ K Y+ + L F + + Y ++ ++ + Sbjct: 66 ATKRIKQYDETIKI--LILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAVHEGN 123 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 LL K LT RE E L I++G+++ EIA +L Sbjct: 124 TNFHPK--VTPALLGRSVVKKEKENPFSM-----LTKREQEVLREIAQGRSNKEIAAVLH 176 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++++ K R+ A YAV+ ++ Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGVI 211 >gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL F2-208] Length = 127 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 64 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 122 >gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +R + +LA D LT RE E L ++EG T+ EIA L +S Sbjct: 118 IRGAMAGKAVLAPALMQRILEAQTSKAADT-LTEREREVLKLVAEGLTNAEIASRLTVSE 176 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ASI+RK R+ A YA+R+ +V Sbjct: 177 ETVKTHVASILRKLGLAHRTQAAIYALRHGLV 208 >gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 221 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 161 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 219 >gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 723 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ ++ L L F + + + + L + Sbjct: 565 GVAATERLTAELPGCRVLALSTFDMDEHVVRALRAGASGFLPKDVSPEELTAALRTVSAG 624 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ L L+ + A + +V LT RE E L I+ G + IA L Sbjct: 625 DAVVAPRLLTR--LIGTFVAPQRTTEEVRLD---GLTPRETEVLRLIATGLDNTGIAEEL 679 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GI TV N+I S+ K + R+ A+ A + +V Sbjct: 680 GIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 715 >gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 249 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIG--LMLLFPKGRIILRDR-LWEIGLLAAYQ 169 F + + D L + R+ G L+ L R L R L E L Sbjct: 100 FEAVRAGASAFLTKDIEAQELISSLDRVVQGEQLINLEVMSRPELAWRVLSEFRQLTGDD 159 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + D K L+ REVE L +++G ++ EIA L I+ TV N++ S++RK Sbjct: 160 GEAGPASDP---KRLPLSVREVEVLDCVAQGLSNKEIAEALFITEQTVKNHMTSVLRKLQ 216 Query: 230 TKTRSGAIAYAVRNN 244 R A+ AVRN Sbjct: 217 VNDRVQAVLCAVRNG 231 >gi|297160873|gb|ADI10585.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRIVAAGEALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+A + + LT RE E L I+ G ++ EIA L ++ TV + Sbjct: 137 R--LIADFARQRPAPRKNFAARRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 I ++ K + R+ A+ +A + +V Sbjct: 195 IGRVLAKLGLRDRAQAVIFAYESGLV 220 >gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 224 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ L E LA+ Sbjct: 91 HADVLEAVKSGATGYLLKSASTEELLDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASD 147 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D + ELT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 148 PA---PASDPDRPRAPELTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 204 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 205 QLHNRVELVRYAIERGL 221 >gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 217 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECL 194 D+ + GL + + RD L L AY AN+ + ++ + ELT RE + L Sbjct: 110 DLDNVLRGLKGVLNGKNWLSRDVLNR---LVAYLANLNHTVTELDTQLEIELTRRETQVL 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T + +G ++ +IA L +S +TV +++ SI RK K R AIA+A RN Sbjct: 167 TALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKRNR 216 >gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri DSM 4166] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 7/152 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRI 142 ++ + E + ++ L E+ G + Y + ++ Sbjct: 63 MMPGLDGFETCRRIKAQPMLEDVPVLFMTALTESEHVLEGFEAGGIDYVTKPIHTEQVLA 122 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + R + R + K + F+LTGREVE L W+S GKT Sbjct: 123 RVAAHLRTARALQNARRNATQAPPVDE----KQIQAMLSQRFQLTGREVEVLHWVSCGKT 178 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + +I ILG+S TVN ++ + K +TR+ Sbjct: 179 NRDIGDILGLSPRTVNKHLEHVYVKLGVETRT 210 >gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4] gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4] Length = 224 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D + L V + G LL P L+ + Sbjct: 95 VFSALRAGASGFLLKDAQPAELVNAVRTVARGEALLAPT---------VTRALIGQFADR 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + G LT RE E L ++ G ++ EIA L +S TV Y++ I+ K + Sbjct: 146 IRPASAAGPGPLEHLTPREREVLVQLARGLSNAEIAEELVLSIETVKTYVSRILAKLDLR 205 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A R +V Sbjct: 206 DRVQAVVLAYRTGLV 220 >gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 230 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 10/134 (7%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D + V + G L P + L +RL ++ Sbjct: 99 FPALKAGARGYLTKDAGGDEIVRAVQSVLSGDAGLSPSIQRRLLERL----------SDP 148 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT REVE L I+EG T+ EIA L +S TV +I ++ KT K Sbjct: 149 EPPQPAPAEAPDGLTAREVEVLALIAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKD 208 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA +V Sbjct: 209 RAQAVRYAYAKGLV 222 >gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 44/79 (55%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +Q ++ + + + LT RE E L I++GK + EI L IS TV+ ++ +I RK Sbjct: 176 FQTSITEENPLEYKNYEPLTEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRK 235 Query: 228 TATKTRSGAIAYAVRNNIV 246 +TR+ A+ YAV I+ Sbjct: 236 MQVRTRAQAVRYAVLKGII 254 >gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] Length = 227 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 16/221 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + + L + G V E +D + P ++ M Sbjct: 1 MTRRVLLIDDHTLFREGLQELLKRHGIDT---VGAVGDGETGID-LARDLLPDVILLDMR 56 Query: 92 LSEKDKYYNVLQRPTE--LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGL 144 + + VL+R + L P+ + + Y + + L Sbjct: 57 MPAMNG-LEVLRRLRQAGLKMPIVMLTTSTEEQDLVECLRNGAQGYLLKEMEPGDLVDAL 115 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + ++ D + L S ELT RE E L ++EG+++ Sbjct: 116 EEILQGKTVVAPD----LAQLLVRVVQGKSSSANEPSPFDELTPREGEILALLAEGQSNK 171 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA LGIS TV ++ +I+RK +R A AV+ + Sbjct: 172 VIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVLAVQQGL 212 >gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 13/203 (6%) Query: 57 GASHFLLVRWDL---FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 G SH + ++++ ++V WP R ++R T P Sbjct: 37 GFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFSKGYIFTDPAIRRVTSSMVPFS 96 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF--PKGRIILRDRLWEI--------G 163 T + PAG + F + M+ + + + E+ Sbjct: 97 WTELWDHDSPAGHRILGEAAEFGLKEGFTVPMVTLDGHSAGLSIAGAMTELPPHLRGPVQ 156 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++A Y LT RE + L WI+EGKT EIA IL +S + V+ Sbjct: 157 MMAIYSFARAAHLRERPPAPVTLTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQ 216 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K R A+ A+R ++ Sbjct: 217 IKSKFQVVNRVQAVVQAMRAGVI 239 >gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 215 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 15/128 (11%) Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 L D +L + + G +LL P+ L AA A + Sbjct: 100 LRAGAAGYVYKDVDPEALAGAIRSVHAGHVLLQPE-------------LAAALLAEDVPA 146 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 G + LT RE E L+ I++G+++ EIA L +S TV ++++I+ K R+ Sbjct: 147 PPQGRGGN--LTEREREVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQ 204 Query: 236 AIAYAVRN 243 A +AVRN Sbjct: 205 AALWAVRN 212 >gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] Length = 235 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231 Query: 243 NNIV 246 ++ Sbjct: 232 FGLL 235 >gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905] gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905] gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 215 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 13/176 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR--- 129 S+ S P ++ + + E D + + ++ + + + M+ Sbjct: 41 SLAESIQPDIILMDLVMPELDGIQATKRIKAKFPKIEILMLTSFSDRDHVVPAMEAGAAG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + + + + + + + + N S + LT R Sbjct: 101 YQLKDIEPDELVLSIRRIMRGENTLHPEATTTLEMDRQEAQNAPHSLN-------PLTPR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + L +++GK++ EIA L ++ TV +I++I K + R+ A YAV++ + Sbjct: 154 EQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR] Length = 232 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 42/82 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ + S V K+ LT RE E L +++G T+ +IA L IS NTV N++ Sbjct: 129 SLIPDMMNRLSASLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVKNHVH 188 Query: 223 SIMRKTATKTRSGAIAYAVRNN 244 +I+ K R+ ++YA+ Sbjct: 189 NILEKLGVSNRAKLVSYAMSRG 210 >gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus A9781] gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus] gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus A9781] gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus ST398] gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family [Staphylococcus aureus 04-02981] gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03] gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00] gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21172] Length = 209 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 13/159 (8%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147 + + + + ++ + + E+ +D + Y T I + Sbjct: 60 DMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKT 119 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 120 SRGESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIA 169 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 + Y D + L+ +G + L A Q Sbjct: 99 VEGIRAGAVGYMLKDADSQE-MLDLIRRAHQGEALFHTVTAAKALAEALQGQRETPDSTT 157 Query: 180 WGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + ELT RE++ L I++G +D+IA L IS TV ++ I++K + R+ A Sbjct: 158 TSQSVLLDELTDRELDVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQA 217 Query: 237 IAYAVRNNIV 246 +A A+R+ IV Sbjct: 218 VAKALRHKIV 227 >gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] Length = 238 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 80/237 (33%), Gaps = 24/237 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DLL+ + + + + +G + + + E K +I+ +++P Sbjct: 6 EDLLSAFLVVKNEDELFEVVKSTASKLGFDYCAYGMQSPLSIAEPK--TIMLNNYPQAWQ 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIR 141 + K +Q P T E +R Sbjct: 64 KRYIEQRYVKVDPTVQHCMVSLQPLVWSSQNAKTQEEKDFWEEARSYGLNVGWAQSSRDF 123 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAY-----QANMFKSYDVHWGKDFE-------LTGR 189 IG + R D+L E A Y S D E LT R Sbjct: 124 IGTRGMLTLAR--STDQLSEKEQKAQYTNMYWLTQTLHSSIAKIVNDVEFSQFNLYLTNR 181 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W +EGKTS EIA I+G++ TVN ++ + M+K + A AV ++ Sbjct: 182 EKEALRWTAEGKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 141 RIGLMLLFPKGRIILRDR-LWEIGLL-AAYQANMFKSYDVHWGKDFE-LTGREVECLTWI 197 R + F + + DR L +G + + Y + K + + RE ECL W+ Sbjct: 129 RAAFVTSFAFTKAVSEDRDLVALGFINSQYYETLSKLSEAELPGPVPTFSRREKECLLWV 188 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S GKT+ +I+VILGIS NT+N Y+ +++ K R A+ A+ N++ Sbjct: 189 SRGKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLI 237 >gi|315612573|ref|ZP_07887486.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315554|gb|EFU63593.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 210 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L GR I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 237 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 20/220 (9%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 +L + ++ + + +G + + + +V S++P R Sbjct: 6 EQILYEIEATHSEHEAFGKIASAVKEIGFEYSAYCLQTPWPLSRRKVLVFSNFPEPWQRR 65 Query: 90 MALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY-----------CS 132 + +L+R + + PV F P+ RY S Sbjct: 66 YHDARYIDVDPLLRRGRQSYAPVIWSDAVFEGTPQLWEEAQAHGLRYGYSLAAVSNCGVS 125 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 +AR L + + + + L LA +A + K + D ELT REVE Sbjct: 126 GMMSMARSHTPLTVRELQQQELKMRWLVNAAHLAITRAVLPK---LSPEGDIELTDREVE 182 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L W+++GKT+ EI++I+ IS TVN ++ + + K T Sbjct: 183 VLKWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNTSN 222 >gi|307710534|ref|ZP_07646970.1| response regulator [Streptococcus mitis SK564] gi|307618687|gb|EFN97827.1| response regulator [Streptococcus mitis SK564] Length = 210 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPESKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ +LT RE + L Sbjct: 107 AGELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|288554158|ref|YP_003426093.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545318|gb|ADC49201.1| two-component response regulator of extracellular degradative enzyme [Bacillus pseudofirmus OF4] Length = 233 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---- 167 V H L + + +L V + G + PK + + + E LA Sbjct: 95 VTHVLKTGASGYLLKEMDAGALIEAVKVVASGGSYIHPK---VTHNLIKEYRRLATEDDK 151 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Y+ ++ + LT RE E L +++G+++ I L IS TV N++++I++K Sbjct: 152 YEESIGFREVEYRKPLHILTRRECEVLQLMTDGQSNRAIGESLYISEKTVKNHVSNILQK 211 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R+ A+ A++ V Sbjct: 212 MSVNDRTQAVVEAIKKGYV 230 >gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 5/174 (2%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-----GMDNRYCS 132 V P L+ + + D + C V ++ + + Sbjct: 44 VCRHTPDVLLLDIRMPVMDGLEAARRVCARSSCKVVMLTTFDLDEYVYDALYAGASGFLL 103 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + ++ ++ + + + + LT REVE Sbjct: 104 KDVRRDDLVHAVRVVAGGDSLLAPTITRRLVADIVRRRREEAATGATPDRLDALTAREVE 163 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ EIA L +S +TV ++++++ K + R A+ A +V Sbjct: 164 ILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGLV 217 >gi|269837258|ref|YP_003319486.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786521|gb|ACZ38664.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 549 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Query: 133 LTFDVARIRIGLMLLFPK------GRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDF 184 ++ AR R+ + L + RI L W L A A + H Sbjct: 423 APYEGARTRVLIALACRELGDEETARIELDAARWSFSQLGAAPDVARVEALSRTHPTAPT 482 Query: 185 E-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT REVE L ++EGKT+ IA L IS TV +I++I K +R+ A AYA + Sbjct: 483 AGLTAREVEVLRLVAEGKTNRAIAEDLFISEKTVARHISNIFTKLDLSSRAAATAYAYEH 542 Query: 244 NIV 246 IV Sbjct: 543 GIV 545 >gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 240 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + L R I ++ + + L ++ + LT RE+E L W Sbjct: 135 ESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSR---GLTLRELEVLQWAR 191 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 239 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 16/160 (10%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + +R + + ++ TE V L D +L + + G Sbjct: 93 EALRTLRSLGNEARVLIVTSFTEQRT-VVPALRAGAAGYVYKDIDPEALAGAIRSVHAGH 151 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +LL P+ LLA + S + LT RE E L I++G+++ Sbjct: 152 VLLQPE---------VARTLLAQEEQAPQPS------RGGSLTEREREVLGLIADGRSNR 196 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 197 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 236 >gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99] gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19] gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99] gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 238 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234 Query: 243 NNIV 246 ++ Sbjct: 235 FGLL 238 >gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A + F+ + D LT RE + L I EG T+ EI+ L I TV ++++I Sbjct: 129 VAGKMVSRFREKEKKPHDD--LTEREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNI 186 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K R+ A YA RN I+ Sbjct: 187 LSKLGVTDRTQAAVYANRNGII 208 >gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] Length = 226 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 14/205 (6%) Query: 56 VGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-- 112 G ++ + EQ L + +W R +E ++ V+ + P Sbjct: 21 YGFTYAAALALPSTDEQGLQTRYLMGNWSHGFQRSYEAAELHRHKVVVATLSTDPMPFEW 80 Query: 113 -FHTLPENITPPAGMDNRYCS---------LTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 TL P R + L G + + R ++E+ Sbjct: 81 DIDTLYGISDPKPSKGARLVAEAGWSEGVLLPVHGMTAMCGALSFAGPNALPSRTVIYEM 140 Query: 163 GLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 A M + + + LT RE +CL GKTS EI ++L +S T++ Y+ Sbjct: 141 QSFAFVFFGMLAAVRFDENRRNNPLTPRERDCLRLAMLGKTSSEIGIVLSLSEYTISQYL 200 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + RK R+ +A A + + Sbjct: 201 TAAQRKLDASNRTHTVAMAAQLGYL 225 >gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363] gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris NZ9000] Length = 209 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E ++ D D + + ++K N ++ L F + A Y Sbjct: 46 EMLDPDVILMDLVMDRLDGIGATQKILAKNPERKILILTS--FIDDEKVFPALAAGAKGY 103 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 T A I + + + ++ +I A + + YD +L+ RE Sbjct: 104 ILKTSQAAEIAMAIRKVANGEDVLSDAVKEKI---AQQKHRKHELYD-------DLSKRE 153 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E L ++ G ++ EIA L IS TV ++++I K R+ A YA+++++V Sbjct: 154 LEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|320007816|gb|ADW02666.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 220 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R + IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGMAPIGANAARMHRRPPGTPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13] gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] Length = 235 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 112 ISQPCWAAQGVFGLLSFVRTGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231 Query: 243 NNIV 246 ++ Sbjct: 232 FGLL 235 >gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1] gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1] gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 82 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N S LT RE + L W + GK+S EI IL +TVN ++++I+RK Sbjct: 4 NARHSQQPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFEV 63 Query: 231 KTRSGAIAYAVRNNIV 246 TR A+ A+R ++ Sbjct: 64 PTRVAAVIKAIRYGML 79 >gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 211 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 226 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 3/143 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + + ++ I+ L Sbjct: 80 PRVLVLTTFDLDEYIVEALRAGASGFLLKDVPPDELVQAIRVVAAGDAIVAPSVTRR--L 137 Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L + A + + E LT RE+E L I++G ++ EIA L +S TV ++ + Sbjct: 138 LDKFAALLPPADRQPTPALLERLTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGN 197 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R A+ A +V Sbjct: 198 VLTKLGLRDRVQAVVLAYETGLV 220 >gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 247 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 82/228 (35%), Gaps = 17/228 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 +++ ++ ++ + LT+ + ++LL K D + ++P Sbjct: 11 EIINKIRLSQTNNDMSLCLQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYY 70 Query: 91 ALSEKDKYYNVLQRPTELFCPV----FHTLPE-----NITPPAGMDNRYCSLTFDVA--R 139 + K ++ P+ F + N+ A + Y +F + Sbjct: 71 DEANLIKDDPIVDYSFSHHSPINWSIFEKQKKMSNQINVIEEAKISGLYSGFSFPIHTKD 130 Query: 140 IRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVEC 193 G++ + D L+ +L + + +LT RE EC Sbjct: 131 GGFGMISFASSQKEKYIDNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKEC 190 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L W EGK+ EI+ ILG S TV ++A+ K R +I+ A+ Sbjct: 191 LIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 238 >gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 240 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51] gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 214 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D +L + ++ G +L P L +L Sbjct: 92 VFQVLQLGVAGYLLKDVDPKTLIDSIRKVHSGQPILSPAVTGKLLGQLVHP--------- 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 L+ RE++ LT++ +G ++ EI L IS TV N+++SI RK A + Sbjct: 143 ------TQNRDTCGLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVE 196 Query: 232 TRSGAIAYAVRNNIV 246 R+ A AV+ +V Sbjct: 197 DRTQAALKAVKLKLV 211 >gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter sphaeroides KD131] gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides] gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131] gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] Length = 233 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 29/195 (14%) Query: 60 HFL---LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116 H++ L R D + SI DW +++ R F Sbjct: 57 HYMRRNLHRVDPTIHKSALSIAPVDWS-------RFERDERF-----RAVFFAAEDFGIT 104 Query: 117 PENITPPA---GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 P+ +T P D S+T + AR P+ R + E+ + A + + Sbjct: 105 PQGLTVPVRGPYGDRGLLSVTRNCAR---------PEWEKHKRAVIGELQVAAVHLHDAV 155 Query: 174 KSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 DV + L+ RE+E L W + GK+ +I ILGIS TV ++ S K T Sbjct: 156 MRSDVISRALRQPRLSTREIEVLQWAAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTL 215 Query: 232 TRSGAIAYAVRNNIV 246 + A+ A+ +V Sbjct: 216 STVQAVGRAIGLGLV 230 >gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 240 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] Length = 208 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 16/169 (9%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P ++ + + E D + Q P V L + PA Y T Sbjct: 48 PDIILMDLVMEEMDGIEATKQLIKQWPEAKVIIVTSFLDDEKVYPALEAGATSYLLKTSK 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 I + + ++ + + + M K H ELT RE+E L Sbjct: 108 AGEIAAAIRRTYEGQSVLEPE------VTGKMMSKMRKPSLPHE----ELTAREMEILLL 157 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +++GKT+ EIA L I+ TV ++++++ K + R+ A+ YA ++ + Sbjct: 158 MTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKL 206 >gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24] gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans TK24] gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 7/175 (4%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 V P L+ + + D + C V ++ + F + Sbjct: 44 VERYAPDVLLLDIRMPVMDGLDAARRVCARSACKVVMLTTFDLDEYVYEALYAGASGFLL 103 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY------DVHWGKDFELTGREV 191 +R ++ + D L + A++ + DV + LT REV Sbjct: 104 KDVRRDDLVHAV-RVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLEALTAREV 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++ EIA L +S +TV ++++++ K + R A+ A +V Sbjct: 163 ETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGLV 217 >gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces ambofaciens ATCC 23877] Length = 223 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 42/76 (55%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + H ++ LT RE E L ++EG ++ +IA LGIS + V +AS++ K Sbjct: 146 DRLRESGQHRPREVSLTARENEVLLLLAEGMSNKQIARRLGISSHGVKRIVASLLLKLGA 205 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ A++N ++ Sbjct: 206 PNRTAAVVTAIQNGLI 221 >gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] Length = 217 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 35/195 (17%) Query: 60 HFLLVRWDLF----QEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 H L R D+ Q LD + + +WP V + + +D Y Sbjct: 42 HALEARPDVILMDIQMPNLDGVQATQAILKEWPEAKVIILTMYRQDAY------------ 89 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 VF + D L + R+ G + L + L Sbjct: 90 -VFEAVKAGARGYLLKDTDASELIGAIRRVHAG-------------EVLLDAELAGRIIQ 135 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + EL+ RE++ L +++G T+ EIA L +S TV N ++ I +K Sbjct: 136 DFRAKKESSLPLHAELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHL 195 Query: 231 KTRSGAIAYAVRNNI 245 R+ A YA+R + Sbjct: 196 NNRTQAALYAIREGL 210 >gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 262 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H T ++ + S V ++ G + P L R G A + Sbjct: 134 VLHAFELGATGYLVKNSWFGSYPQAVLQVANGGASITPNLARRLLQRFDPSGAAAPHAQR 193 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + L+ RE E L ++ G TS EI L IS TVN +I +I RK + Sbjct: 194 RVEQ------ETERLSQREKEVLRMVASGYTSAEIGNRLFISSLTVNTHIKNIYRKLQVR 247 Query: 232 TRSGAIAYAVRNNI 245 TR+ A+ +A + Sbjct: 248 TRAQAVRFASLRGL 261 >gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 48/100 (48%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ R + + + + A + KS EL+ RE++ L I++G+++ E Sbjct: 116 LVETVRRAVRGESVLHPQVAARVVHELRKSKQTSTNPFAELSERELDVLRLIADGRSNAE 175 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L IS TV ++++I+ K R+ A +A + + Sbjct: 176 IASRLSISEKTVKGHVSNILSKLYLLDRTQAAVFAWQQGL 215 >gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 240 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + L R I ++ + + L ++ + LT RE+E L W Sbjct: 135 ESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSR---GLTLRELEVLQWAR 191 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] Length = 69 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++GK++ I L IS TV N+++SI++K R+ A+ A+++ Sbjct: 6 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 64 >gi|307704250|ref|ZP_07641169.1| response regulator [Streptococcus mitis SK597] gi|307622161|gb|EFO01179.1| response regulator [Streptococcus mitis SK597] Length = 210 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P +V + + E + L + P V L P Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAG---------- 96 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTW 196 R ++ ++ R G LA Q K + H +LT RE + L Sbjct: 97 -ARGYMLKTSRADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 214 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S LT RE E L I++G+++ EIA +L I+ TV ++++++ K R Sbjct: 137 RSVVKKENPFSMLTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDR 196 Query: 234 SGAIAYAVRNN 244 + A YAV++ Sbjct: 197 TQAALYAVKHG 207 >gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 237 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Query: 140 IRIGLMLLFPKGRIILRD-------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 +G++ L + R+ + A + + LT REVE Sbjct: 123 GGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVE 182 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A ++ Sbjct: 183 VLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 240 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 13/203 (6%) Query: 57 GASHFLLVRWDL---FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV- 112 G SH + ++++ ++V WP R ++R T P Sbjct: 37 GFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFSKGYIFTDPAIRRVTSSMVPFS 96 Query: 113 ----FHTLPENITPPAGMDNRY-----CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 + G + ++ + + + + Sbjct: 97 WTELWDHDSPAGHRILGEAAEFGLKEGFTVPMVTLDGHSAGLSIAGAITELPPHLRGPVQ 156 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++A Y LT RE + L WI+EGKT EIA IL +S + V+ Sbjct: 157 MMAIYSFARAAHLRERPPAPVTLTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQ 216 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K R A+ A+R ++ Sbjct: 217 IKSKFQVVNRVQAVVQAMRAGVI 239 >gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241] gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241] Length = 211 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 230 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 8/156 (5%) Query: 91 ALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNR---YCSLTFDVARIRIGLM 145 L + + + P PV L E+ G + Y + + + Sbjct: 66 GLDGFETCRRIKEHPANADIPVLFMTALTESRHVVQGFEVGGSDYVTKPIQTDEVLARVA 125 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 RI+L R AA + ++ V + F+LTGREVE L W++ GKT+ + Sbjct: 126 AHLRTSRILLSAR--AASQPAAPSLDDEPAHRVLSAR-FQLTGREVEVLRWVACGKTNRD 182 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 I IL +S TVN ++ + K +TR+ A + A+ Sbjct: 183 IGTILDLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218 >gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 240 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVARTISAEQKYLMSSLMPVLHSVARGLKFSSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 236 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 2/147 (1%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 + P L F + + A + + ++ ++ Sbjct: 87 EGVSGPRVLMLTTFDVDDYVYEALRSGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVT 146 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+A + A + ELT RE E L I++G ++ EIA L ++ TV Sbjct: 147 RR--LIADFAARHPAPRKGTGHRPKELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKT 204 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I I+ K + R+ A+ +A + +V Sbjct: 205 HIGRILAKLRLRDRAQAVIFAYESGLV 231 >gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D +L + ++ G +L P L +L Sbjct: 90 VFQVLQLGVAGYLLKDVDPKTLIDSIRKVHSGQPILSPAVTGKLLGQLVHP--------- 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 L+ RE++ LT++ +G ++ EI L IS TV N+++SI RK A + Sbjct: 141 ------TQNRDTCGLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVE 194 Query: 232 TRSGAIAYAVRNNIV 246 R+ A AV+ +V Sbjct: 195 DRTQAALKAVKLKLV 209 >gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 212 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 71/198 (35%), Gaps = 18/198 (9%) Query: 54 EYVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 +Y+ + +V E ++ D + E + + Sbjct: 22 DYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGYTFVETIRSNSATDWIPV 81 Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 +F + + + Y F+ + + +L+ Sbjct: 82 IFLSARGQTADRVRGLTTGADVYMVKPFEPEELVAQVESSLKHTERLLQ----------- 130 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 N+ + ++ ELT E + + +++ G ++ EIA +LG+S+ TV +++++++ K Sbjct: 131 -VQNVGIQPVIKLDREIELTPTETKVIQYVARGLSNREIAEVLGVSQRTVESHVSNMLGK 189 Query: 228 TATKTRSGAIAYAVRNNI 245 T R+ +A+ + + Sbjct: 190 TGLHNRTELARWAIESGL 207 >gi|260886222|ref|ZP_05897485.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC 35185] gi|330839784|ref|YP_004414364.1| two component transcriptional regulator, LuxR family [Selenomonas sputigena ATCC 35185] gi|260863941|gb|EEX78441.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC 35185] gi|329747548|gb|AEC00905.1| two component transcriptional regulator, LuxR family [Selenomonas sputigena ATCC 35185] Length = 223 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L + + G ++P L +RL+ G+ N Sbjct: 91 VLELLKNGVLGYLLKDVEPSMLIKAIHVVNEGNAFVYPS----LAERLFG-GVSEDENIN 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE++ L+ I++G ++ +IA L +S TV N++ +I RK Sbjct: 146 EKARTMWRESRSERLTSREMDVLSCIAKGFSNQDIAQALFVSEKTVKNHLTNIFRKLNVN 205 Query: 232 TRSGAIAYAVRNNI 245 R+ A+ Y +++ I Sbjct: 206 DRTQALIYVLKHKI 219 >gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI] gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 211 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+N + Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 216 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 14/161 (8%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + +R + + VL + VF ++ D +L + R+ G Sbjct: 68 EAIRAIIAAWSQARIIVLTTF-DRDDYVFQSVRAGAMGYLLKDAPAEALLQTIRRVHAGE 126 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + P+ + R +A F+L+ RE E L +++G ++ Sbjct: 127 VFIQPE----IASRTLREAATGRRRAGTIP---------FDLSEREREVLVLLAQGLSNR 173 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L I+ TV N++++I+ K + R+ A A R + Sbjct: 174 EIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARREGL 214 >gi|229818737|ref|YP_002880263.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564650|gb|ACQ78501.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 52/156 (33%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ P L F + + + RI + ++ Sbjct: 65 GIAATAALTRDADAPRVLVVTTFENDDYVLDALRAGASGFLLKRAHPDRIVEAIRVVARG 124 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ + + + + A + H LT RE E L ++ G T+ EIA L Sbjct: 125 DAVLFPEAVRRLVAASPAGATPSPADGPHGAAIGRLTEREEEVLRLVAAGMTNAEIAAQL 184 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ +++ K + R A A + V Sbjct: 185 WLGVETVKTHVGNVLAKLGARDRLQAAIVAYESGFV 220 >gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 15/171 (8%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTF 135 P +V + L D + E + + E + + + YC Sbjct: 48 QPQVIVMDIGLPRLDGIAATQRLKREFPDIRVVMLTSHQSALEAVAALSSGADAYCIKGE 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + R+ + + + +A + S D+ L+ RE++ L Sbjct: 108 RIERLLMAIAAAQEGATYLDP-------QIARHVIQHLHSPQPTM--DYHLSQRELDVLK 158 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EG ++ EIA L +S NTV ++ I+ K A R A A+RN +V Sbjct: 159 LMVEGYSNPEIAGKLFLSPNTVKTHVRGILNKLAVDDRVQAAVVALRNGLV 209 >gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 10/169 (5%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFDV 137 P +V + L D + Q ++ V HTLP I + Sbjct: 63 PDLIVMDIGLPGLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGAT 122 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 I + G L ++ + N+ L+ RE++ L I Sbjct: 123 LERLILAIAAAQDGATYLDPQIARV-----VVENLKPPVPEGQADVSSLSEREIDVLKLI 177 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EGK++ EIA L +S NT+ ++ IM K + R A A+R+ +V Sbjct: 178 VEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226 >gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|306828929|ref|ZP_07462121.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429107|gb|EFM32195.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 210 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVRKVASGELAIEQ----EVSKKVEYHRNHIELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 13/222 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + + + E G F LV D +V P ++ + + Sbjct: 7 VIRVVVVDDHLVVREGLRMMLELAG-EGFALVG-DAADGATALRVVEELQPDVVLMDLRM 64 Query: 93 SEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLML 146 D + P ++ + T E+ G+ + C L + Sbjct: 65 PGMDGLEAIAHIRNAWP-QIAVVILTTYNEDDLMVRGLRSGACGYLLKDTNRETLFHAIQ 123 Query: 147 LFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +G ++L+ + L ++ + S+ G ELT RE E L ++ G+ S Sbjct: 124 AAARGEMLLQPEMLARVFALTSSQAKDAAPSFGNVEG--MELTEREREILQGVARGERSK 181 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIAV LGIS TV +++ASI K +R+ A+A A+ ++ Sbjct: 182 EIAVRLGISIRTVGSHLASIYTKLGVDSRASAVALAIERGLL 223 >gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 262 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 20/261 (7%) Query: 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLA--RMIPLDCTVSWTMRMYALTEYVGASHFL 62 ++ V+ + +D+ R S R+ S +G H++ Sbjct: 1 MKHVSRRRSNDDQHRPPPTSGRAQGGAPAPAMRLAYATDITSLVESFGHEAGKLGFPHYM 60 Query: 63 LVRWDLFQEQKLD----SIVSSDWPFDLVR-----CMALSEKDKYYNVLQRPTELFCPVF 113 + R + ++ + +P D VR A ++ LQ + + Sbjct: 61 ISRVTRSRSTSTRRTALEMIGARYPQDWVRYYQRRDYASTDPVHRAAFLQSAPFRWHDII 120 Query: 114 HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL-----RDRL-WEIGLL 165 AG L+ V + ++L G + RL + I + Sbjct: 121 GLSKAERRLLDEAGEAGLRAGLSIPVHQSDGSILLFNLSGPLRSVNDTINSRLAYLISVQ 180 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 Y+ + LT R++ECLTW++ GKTS EI ILG SR TV +I M Sbjct: 181 FHYELHRLALIPSRRMAHL-LTARQLECLTWVARGKTSAEIGEILGRSRYTVEFHIKEAM 239 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 ++R+ A +A I+ Sbjct: 240 DALNIRSRTAAAVHATVQGII 260 >gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A Sbjct: 153 PRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212 Query: 238 AYAV 241 + A+ Sbjct: 213 SVAL 216 >gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 8/176 (4%) Query: 78 VSSDWPFDLV------RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-AGMDNRY 130 + S FD+V + E + Q + H+ I Y Sbjct: 46 LVSQHSFDVVILDVGLPGIGGVEACRQIKQKQPLLPVLVLTSHSQKPLINRIIEAKAQGY 105 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 C + + + + EI A + + + + + LT RE Sbjct: 106 CLKGIAPEALILAIRSVAAGASWWDSIATQEIQKTFGQFAEVPEGSEAYSASN-PLTKRE 164 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ GK++ EIA IL I+ TV ++ +I++K + R+ A A++ +V Sbjct: 165 QEILALIASGKSNQEIADILYIAPGTVRVHVHTILKKLNARDRTQAALVAIQKKLV 220 >gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 236 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 62/170 (36%), Gaps = 14/170 (8%) Query: 83 PFDLVRCMALSEKDKYYNVLQ---RPTELFCPVF---HTLPENITPPAGMDNRYCSLTFD 136 P +V + L D Q E + T E I + + YC Sbjct: 75 PDLVVMDIGLPRLDGIATTQQIKAALPETHVVMLTSHKTETEIIAALSSGADAYCIKGAS 134 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + R+ + + +A + K G L+GRE+E L Sbjct: 135 IERLLNAIAAAVDGAAYLDP-------QIARQVIDHLKPPSAK-GNTANLSGRELEVLKL 186 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EG ++ EIA L +S NTV ++ IM K A R A A+R+ +V Sbjct: 187 MVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSGLV 236 >gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 219 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D +L V R+ G ++L L E Sbjct: 93 VFEAVKAGARGYLLKDVDAEALVDAVRRVNEG--------EVLLDAELAE----QIIHDF 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K + +LT REV+ L +++G T+ EIA LGIS TV N ++ I K Sbjct: 141 RAKRDVLPQAHHADLTDREVQILRLLAQGATNQEIADELGISEKTVRNRLSEIFSKLHLN 200 Query: 232 TRSGAIAYAVRNNI 245 R+ A YA+R + Sbjct: 201 NRTQAALYAIREGL 214 >gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 265 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 42/75 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ + + + + L+ RE E L W++ GKT+ EI+VIL +S NTV ++ ++ Sbjct: 163 LSYMRCHSAWNPERPAPPPTLLSKREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNV 222 Query: 225 MRKTATKTRSGAIAY 239 +K + R AIAY Sbjct: 223 FQKIGVENRWSAIAY 237 >gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata] Length = 242 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 15/181 (8%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPENI---------TPPAGMDNR 129 S++P + V + K V+ P F + +P I + G+ Sbjct: 63 SNYPSEWVDTYRKNSLYKSDPVMANTAITATPFFWNEIPAEIDNNPEIFDQSASYGIKQG 122 Query: 130 YCSLTFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 Y + R L L + II+R L+ I L+ AN ++ + + + Sbjct: 123 YTVPIHEPGRAFGSLHLSSEENDPDFPIIVRSNLFIIKTLS-VIANQYRPMETTIESNLK 181 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L W++ GK EI +I+ I+ TV + + K A+ AV+ N Sbjct: 182 LSPREIEFLRWLALGKNYKEIGLIMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNF 241 Query: 246 V 246 V Sbjct: 242 V 242 >gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2] gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2] Length = 245 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 11/145 (7%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL---------RDRLWEIG 163 F L +R+ L ++ +I G L P L D + G Sbjct: 101 FPALQHGADGYLLKVDRFEVLVEELQKIVRGQPPLSPAIARRLLTHFRQGAGPDLPPDSG 160 Query: 164 LLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 ++ + + + + LT RE E LT++S+G T EIA ++GI TVN++I Sbjct: 161 FVSTTGFTTSRPVPMEKALPEHERLTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHI 220 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 SI +K +R+ A A + +V Sbjct: 221 KSIYKKLNVSSRAEAAVLASKQGLV 245 >gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 218 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 46/82 (56%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Y +Y + ++ ELT REV+ L + +G ++ EIA L IS +T+ +++ Sbjct: 136 LEQLLTYYKGKESTYSIEPAEEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHL 195 Query: 222 ASIMRKTATKTRSGAIAYAVRN 243 +I RK K R+ A ++A RN Sbjct: 196 YNIFRKIEVKNRTQATSWAKRN 217 >gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] Length = 238 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 115 ISQPCWAAQGVFGLLSFVRTGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234 Query: 243 NNIV 246 ++ Sbjct: 235 FGLL 238 >gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 6/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + I + + +I + Sbjct: 78 PKVIVLTTFDLDEYAFAALRAGASGFLLKDAPAEEIVAAVRTVHEGDAVIAPSTTRRL-- 135 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ + + LT RE E L I++G+T+ EIA L +S TV ++ I Sbjct: 136 ----LDHVAPTLPLPADPPVPLTDREREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRI 191 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A + + Sbjct: 192 LAKLQLRDRVQAVIWAYEHGQI 213 >gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 213 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + L+R EL P F + Y Sbjct: 51 PDVILMDVKMPGVDG-IDALRRLRELDHPARVLVVTSFTEQRTVVPALRAGAAGYVYKDI 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + LLA + G+ LT RE E L Sbjct: 110 DPDALAGAIRSVHAGHVLLQPE--VAGALLAQ------EDTGPAQGRAGTLTEREREVLG 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGV 211 >gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 46/101 (45%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ + + + + + A + + EL+ RE+E L I+ G ++ E Sbjct: 116 LVEVARKAVRGESVLHPRVAARVVRELRGTRSEAPNPFVELSERELEVLRLIAGGLSNTE 175 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS TV ++++I+ K R+ A +A + ++ Sbjct: 176 IAARLTISEKTVKGHLSNILSKLHLMDRTQAAVFAWQQGLI 216 >gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] Length = 210 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + ++ + G ++L P+ + RL + + + Sbjct: 90 VYPALEAGAASYILKTSTASTIANAIRSTYKGEIILEPEVTGKMMARLTKKQVHQLH--- 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +LT RE E L IS+G ++ EIA L I+ TV ++++I+ K + Sbjct: 147 ------------DDLTNREQEILMLISQGNSNQEIADALFITLKTVKTHVSNILAKLEVE 194 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YA +++++ Sbjct: 195 DRTQAAIYAFKHHLI 209 >gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032] gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061] gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032] gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061] Length = 211 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++GK++ IA L I+ TV +I +I+ K + R+ A YA R+ + Sbjct: 150 LTAREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKLDVEDRTQAAVYAHRHKL 209 Query: 246 V 246 + Sbjct: 210 I 210 >gi|149915149|ref|ZP_01903677.1| two-component response regulator, putative [Roseobacter sp. AzwK-3b] gi|149810870|gb|EDM70709.1| two-component response regulator, putative [Roseobacter sp. AzwK-3b] Length = 299 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G G I RD L +I LL S + F+LT RE E L W++ GKT Sbjct: 200 GATSFHFVGVSIARDYLVKITLLEG------ASNEEKLRAAFDLTARESEVLFWLTLGKT 253 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +I+ IL +S TVN ++ + +K R+ A A R Sbjct: 254 NRDISAILDLSARTVNKHLEQVFQKMGVDNRTSAAVLADR 293 >gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 217 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 18/224 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + L + + A ++ Q+ +V P ++ + + Sbjct: 1 MIRILLVDDQTLVRQGIQTLLD-LEADLTVVGTAVNGQQAI--ELVERLQPDVVLMDIRM 57 Query: 93 SEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 D + + F I Y D + I + + Sbjct: 58 PVMDGVAATREICRRWPHIGVIILTTFDDDEYVIEGLKAGARGYMLKDADSSDIVASIRI 117 Query: 147 LFPKGRIIL----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + +I R L E LAA S LT RE++ L I+ G + Sbjct: 118 VARGEALIQPSITRKVLAEFSRLAASAPATRPSPLAE-----PLTEREMDVLHGIAAGHS 172 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L IS TV NY++S++ K A + R+ AI A ++ Sbjct: 173 NREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRARELGLL 216 >gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1] gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1] Length = 213 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S LT RE E L I++G+++ EIA +L I+ TV ++++++ K R Sbjct: 137 RSVVKKENPFSMLTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDR 196 Query: 234 SGAIAYAVRNN 244 + A YAV++ Sbjct: 197 TQAALYAVKHG 207 >gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|149018085|ref|ZP_01834544.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168482621|ref|ZP_02707573.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|147931649|gb|EDK82627.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|172043787|gb|EDT51833.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|332203553|gb|EGJ17620.1| response regulator [Streptococcus pneumoniae GA47368] Length = 210 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKILPVLDAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L] gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Ames] gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Sterne] gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L] gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 215 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K+++L+ RE E L I+ G T+ EIA L IS TV +IA I K RS + YA Sbjct: 147 EKNYDLSDREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYA 206 Query: 241 VRNNIV 246 +RNNI+ Sbjct: 207 MRNNII 212 >gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 225 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 4/142 (2%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + F + Y + + G+ + +G + + L Sbjct: 84 VLLTTFDVEQYVFDGIRAGASGYLLKDTETDELLSGIRAM-HRGATLFNSSTAKRALDQI 142 Query: 168 YQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + M + GKD LT RE E L ++ GK + EI+ IL IS T +I I Sbjct: 143 LTSGMQEPDSDSPGKDRLLGALTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHI 202 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 M+K R+ A+ A+R +V Sbjct: 203 MQKLGALDRTQAVVTAIRMKLV 224 >gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911] gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911] Length = 211 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 43/81 (53%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 ++ + + D ELT RE++ L I++GK++ EIA L I+ TV ++++++ Sbjct: 131 TSHLLSHLSNKDKKKSPIDELTKRELDVLKEIAKGKSNKEIAASLFITEKTVKTHVSNLL 190 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R+ A AVR +V Sbjct: 191 SKLEISDRTQAALLAVREKLV 211 >gi|294632015|ref|ZP_06710575.1| two-component system response regulator [Streptomyces sp. e14] gi|292835348|gb|EFF93697.1| two-component system response regulator [Streptomyces sp. e14] Length = 219 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 59/126 (46%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 + ++ +A G ++ + + L R + AA H Sbjct: 93 GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPARPGAAPIGAARLHRRPPGAPSHP 152 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A A Sbjct: 153 GGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVA 212 Query: 241 VRNNIV 246 +R I+ Sbjct: 213 LRTGII 218 >gi|229592530|ref|YP_002874649.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364396|emb|CAY52185.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 830 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + I RL GLL+ + M D L+ RE+E L I+ G ++ EIA L Sbjct: 737 QAIRELRLRSPGLLS--ELGMEPQASTPGAVDNPLSQRELEVLQLIALGNSNLEIADRLF 794 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS +TV + I K + R+ A+A A + Sbjct: 795 ISLHTVKTHARRIHSKLGVERRTQAVAKAKALGL 828 >gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 530 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 14/168 (8%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + N L+ + L + P AG + A GL+ P Sbjct: 353 GRILRRVNGLESVVSVAMKHRERLDGSGFPRGIAGAELTAKDRLLAAAEAYQGLLEPRPH 412 Query: 151 GRII----LRDRLWEIGL--------LAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + DRL E +AA A + LT REVE L ++ Sbjct: 413 RPALDARGAADRLGEEARAGRLDAESVAAVLAAAGQRQSRRTPWPAGLTDREVEILRLVA 472 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G+++ EIA L I+ T N++ + K R+ A A+ +V Sbjct: 473 QGRSNKEIAAELFIAEKTARNHVERVYAKLGVNNRTQAGLAAIDRGLV 520 >gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 49/107 (45%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 +R G L + ++ R LL ++ + LT RE E L W SE Sbjct: 129 LRTGPALSSGEISMLRRQMQIAANLLHLSMYEHLDVPTMNCVSEVNLTMREREILRWTSE 188 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT++ I IL IS TVN +I++++ K + A+A A ++ Sbjct: 189 GKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235 >gi|108762123|ref|YP_628591.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466003|gb|ABF91188.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LA +A S LT RE E L ++EG ++ IA L IS +T ++ + Sbjct: 125 ALAELRATPRASLPAQATAPDALTPREREVLGLLAEGLSNKAIADRLDISEHTAKFHVNA 184 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R+ A+ A + +V Sbjct: 185 VLAKLGVQRRTEAVVRAAKLGLV 207 >gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 7/175 (4%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 V P L+ + + D + C V ++ + F + Sbjct: 44 VERYAPDVLLLDIRMPVMDGLDAARRVCARSACKVVMLTTFDLDEYVYEALYAGASGFLL 103 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGREV 191 +R ++ + D L + A++ + D LT REV Sbjct: 104 KDVRRDDLVHAV-RVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLEVLTAREV 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++ EIA L +S +TV ++++++ K + R A+ A +V Sbjct: 163 ETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGLV 217 >gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC] gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC] gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 264 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 6/134 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H T ++ + S V ++ G + P L R A ++ Sbjct: 136 VLHAFELGATGYLVKNSWFGSYPQAVLQVANGGASITPHLARRLLQRFDRAAAPATHEQQ 195 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + L+ RE E L ++ G TS EI L IS TVN +I +I RK + Sbjct: 196 Q------DERETERLSQREKEVLRMVASGYTSAEIGTRLLISSLTVNTHIKNIYRKLQVR 249 Query: 232 TRSGAIAYAVRNNI 245 TR+ A+ +A + Sbjct: 250 TRAQAVRFASLRGL 263 >gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 226 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 8/216 (3%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP---FDL-VRCM 90 R++ +D + + F++V + ++V DL ++ + Sbjct: 7 RVLLVDDQELVRSGLRRILRR--KDGFVIVGECADGAEVPGAVVEHTPDVVLMDLRMKKV 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + +P + E ++ L A I + + Sbjct: 65 DGIRATRDLRSGAQPPPVLVLTTFDDDELLSGSLRAGAAGFILEDSPAEDLIRAVRTVAE 124 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G L + +LA Y+ + S D ELT RE++ L I G ++ EI L Sbjct: 125 GGACLDPAVTGR-VLATYRT-VAPSSDGGRNHLTELTARELDVLALIGRGHSNSEIGREL 182 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GIS TV +++ I K + R+ AI YA + IV Sbjct: 183 GISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218 >gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 46/85 (54%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 E L A Q M ++ + LT RE+E L +SEGKT+ +I+ L I+ TV + Sbjct: 122 ESVLDAKVQGQMISAFTANVPLHQALTKRELEILKLMSEGKTNQQISEELYITIKTVKTH 181 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 ++ I+ K + R+ A+ YA++ + Sbjct: 182 VSHILAKLEVEDRTQAVIYALKEKL 206 >gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144] gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045] gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 13/156 (8%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150 + + + ++ + + E+ +D + Y T + I + + Sbjct: 63 GVEATTEIKKDLPQIKVVMLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 214 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M + ELT RE+E L I EG T+ EI+ L I TV ++++I+ K + Sbjct: 134 MGRLRGREKKPHEELTERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVS 193 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YA +N ++ Sbjct: 194 DRTQAAVYAHQNGLI 208 >gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 230 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 9/177 (5%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-------FCPVFHTLPENITPPAGMDNR 129 +V +D +R + + + +P F + + Sbjct: 50 VVPADVILMDIRMPVMDGLEATATITSKPLPTGVSPKILILTTFEEEEYIMGAVQAGASG 109 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + ++ + + +I ++ A +A ++ D H LT R Sbjct: 110 FLVKDAPPDQMLEAIRTIHRGDAVIGPSSTKKLVEKLAKEATAMRATDPHILD--GLTER 167 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L +++G T+ EIA L ++ T+ +I I K + R A+ A +V Sbjct: 168 EIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGHIFYKLGARDRVQAVVLAYEAGLV 224 >gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 240 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L W +GKT+ EI++I +S +TV ++ +I K R+ A+ A+ + Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|322377077|ref|ZP_08051569.1| DNA-binding response regulator VraR [Streptococcus sp. M334] gi|321281790|gb|EFX58798.1| DNA-binding response regulator VraR [Streptococcus sp. M334] Length = 210 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 P +V + + E + L E + + + +DN + R Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWHE------AKILIVTSYLDNEKIMPVLNAG-ARG 99 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEG 200 ++ ++ R G LA Q K + H +LT RE + L I++G Sbjct: 100 YMLKTSSADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIAKG 159 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 160 YENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] Length = 253 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDF 184 D + + + K + L+++ L AA A++ + +DF Sbjct: 125 DGISLKVHGPGGDSAVVGLGFAAKQARLSSIALYKL-LCAAQIAHLRYCALAESQSPRDF 183 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REVE L WI+ GK++ IA ILGIS +TV+ + I K R+ A + Sbjct: 184 GLSPREVEVLEWIATGKSNGVIAEILGISPHTVDTIVRRIFAKLDVNDRTTAAIRGLGAG 243 Query: 245 IV 246 ++ Sbjct: 244 LL 245 >gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 239 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + PT++ + + L Sbjct: 68 DVVLMDVQMPKLDGLEATRRLLGPAGADHPTKVIILTTFDREDYLFEALRAGASGFLLKN 127 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 I + + +G +L + ++A + A + ELT RE E L+ Sbjct: 128 ASPEDLIESVRIVARGDALLSPEVTRR-VIARFSAPAVTGP---TRRPSELTDREFEVLS 183 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G ++ EIA L + TV +++ I+ K + R+ A+ +A N IV Sbjct: 184 LLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENGIV 234 >gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 227 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 1/215 (0%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + E VG + +L E D +V D ++ + Sbjct: 9 LVDDQALVRAGFRVILGAEPDIEVVGEAGDGERAVELVAELAPD-VVLMDVQMPVLDGIE 67 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 + + + P + + + L + + + +G Sbjct: 68 ATRRILGPAPAEHPVRVVVLTTFDREDYLFEALRAGASGFLLKNASPEDLVEAIRVVARG 127 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +L + L + + +LT RE E L ++ G ++ EIA L Sbjct: 128 DALLSPEVTRRVLARFAGPAPRAAPATAPNRPADLTDREYEVLVHLARGSSNAEIAARLH 187 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV +++ ++ K + R+ A+ YA + +V Sbjct: 188 LGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHGVV 222 >gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A Sbjct: 153 TRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212 Query: 238 AYAV 241 + A+ Sbjct: 213 SVAL 216 >gi|121053812|gb|ABM47010.1| response regulator [Amycolatopsis orientalis] Length = 222 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPKGR 152 + + +R E+ V T ++ ++ LT + IG + Sbjct: 68 GVEATRRIKERHPEIEIVVLTTYADDDWVLRALEAGALGYLTKSANKHEIGRAVHAAAAG 127 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 L D + +L A + S D LT RE LT I+ G ++ EIA L + Sbjct: 128 QALLDPQVQRRVLGAALTSAPASAPPPED-DANLTKREAHVLTLIAAGHSNKEIAAELFV 186 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++I I KT ++ R+ A+ YA + V Sbjct: 187 SETTVKSHINRIFAKTGSRDRAQAVRYAYQAGYV 220 >gi|320160284|ref|YP_004173508.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994137|dbj|BAJ62908.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 216 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 12/170 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + R + FH Y Sbjct: 50 PDVILMDLIMPEMDGVEATQRVRQISPRTQVIVLTSFHEDTHIFPAIKAGALSYLLKDVS 109 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + ++ + A M + LT RE E L Sbjct: 110 AEELGEAIRAAARGEAVL------HPQVAARLVKEMRGTPAEKPNPYTALTEREQEVLKC 163 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EIA L +S TV ++++I+ K R+ A YA + ++ Sbjct: 164 IAQGMSNAEIAAHLVVSEKTVKGHVSNILSKLHLADRTQAAIYAWKEGLI 213 >gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 277 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 18/215 (8%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 TE +G HF + +++ +P + + + E V Sbjct: 23 LARDFQRCTEALGFRHFACCSHVDPLKPPRRAVMLHSYPKEWAQLFSELELFDIDPVFLH 82 Query: 105 PTELFCPVF---HTLPENITPPA----------GMDNRY--CSLTFDVARIRIGLMLLFP 149 + P F + ++PP G+ Y + D R + P Sbjct: 83 ASRSLVPFFWDTEAFNDELSPPQQELFNEAGRYGLTRGYTVPIHSVDAPRDFRASCSVVP 142 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEI 206 + + L+A Y + L+ RE +CL ++GK+ Sbjct: 143 DSESLEPAAYQAVQLMAFYLYDTASKDAQQKDPPPVQQPLSRRERQCLELAAQGKSDWVS 202 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ILG+S TV+N++ + R+ TR A+ +A+ Sbjct: 203 SRILGLSERTVHNHVENAKRRLQVATRMQAVMHAL 237 >gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti] Length = 241 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 14/181 (7%) Query: 59 SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118 SH+L +++ + ++ S+ PF + + +R +LF Sbjct: 62 SHYLRHQYERI-DPVIERARCSECPFQW------GRGFGHAGISKREQQLFDEAAEFGIC 114 Query: 119 NITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 +D R ++TF R+ M + + L EI + K Sbjct: 115 CGLTIPLVDRRGGVAAMTFAADRLDPSFMRIAEQYEQAL-----EIMATCFHIGVRRKLS 169 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE ECL W ++GK++ EI ILGI T ++ + +K +T++ A Sbjct: 170 GGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQA 229 Query: 237 I 237 + Sbjct: 230 V 230 >gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a] Length = 235 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 16/183 (8%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDN 128 ++ +++P R ++ + + P+ + P AG+ Sbjct: 51 VMFNNYPRQWQRRYDTENYLAIDPIVAQGRQSQTPIIWADSVSREAPIFWEEARAAGLKV 110 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGL-----LAAYQANMFKSYDVHWG 181 + + + A ++ L + I R L EI + +A + S + Sbjct: 111 GWSQSSINAA-GAASMLSLSRSSQPITRQELDANEIKMRWLVNVAHLALSNRISTRLANP 169 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +LT RE E L W GKTS EI+ +L IS NTVN +I + + K + ++ A+ A Sbjct: 170 YEVKLTSREKEVLKWTGSGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQAF 229 Query: 242 RNN 244 Sbjct: 230 LTG 232 >gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 216 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L I+ G+++ EIA L IS NTV N++ +IM K K R+ A AVR Sbjct: 153 LTPREREILGLIARGRSNREIAQALTISENTVKNHLKNIMAKLDVKNRAQLAALAVR 209 >gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L ++ G+ + EIA L I+ NTV N++ +I+ K +R A+ YAVR Sbjct: 161 KLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRMEAVVYAVREK 220 Query: 245 IV 246 ++ Sbjct: 221 LL 222 >gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 237 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R+ + A + + LT REVE L W ++GKTS EI+ IL IS +TV Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N ++ + + K T ++ A+ A ++ Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14] gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112] gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] Length = 237 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R+ + A + + LT REVE L W ++GKTS EI+ IL IS +TV Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N ++ + + K T ++ A+ A ++ Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|270293338|ref|ZP_06199547.1| DNA-binding response regulator VraR [Streptococcus sp. M143] gi|270278187|gb|EFA24035.1| DNA-binding response regulator VraR [Streptococcus sp. M143] Length = 210 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P +V + + E + L +RP V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKERPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHIELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 212 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 170 ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 M + K+ ELT RE E L I+EGK + EIA L I+ TV ++++I+ K Sbjct: 131 GKMMQRLTAKPEKNLHDELTNRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSK 190 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R+ A YA ++++V Sbjct: 191 LDVQDRTQAAIYAFQHDLV 209 >gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 211 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 36/214 (16%) Query: 62 LLVRWDLFQEQKLDSIVSSDW-----------------------PFDLVRCMALSEKDK- 97 L+V D + L+ V SDW P ++ + L D Sbjct: 4 LIVEDDPMMQLGLE-QVLSDWADIDLIGIAEDGYLGVETALNQKPDLILMDIGLPRMDGI 62 Query: 98 --YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 + + E+ + + E I + + YC V R+R + Sbjct: 63 EATQKIKEALPEIRVVMLTSHTAETEVIAALSSGADAYCIKGASVDRLRAAITAASEGAT 122 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + + + ++ K L+ RE E L + EGKT+ +IA L + Sbjct: 123 YL------DPQVAKCVINHLQPPTPQSDLKSTNLSPREFEVLKLMVEGKTNVKIAEELYL 176 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S NT+ ++ IM K + R A A+R +V Sbjct: 177 SPNTIKTHVRGIMNKLSVDDRVQAAVTALRLGLV 210 >gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 222 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 F+LT REV+ L W++ GKT+ +IA IL +S TVN ++ I K +TR+ A Sbjct: 153 TRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212 Query: 238 AYAV 241 + A+ Sbjct: 213 SVAL 216 >gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] Length = 213 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 13/165 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARI 140 DLV + + + ++ + + + + Y + + Sbjct: 53 MDLVMPV-MDGIQATRLIKEQFPHIIVLMLTSFSDQDHVVPAIEAGAAGYQLKDIEPDEL 111 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 L L + E+ + + +LT RE E L +++G Sbjct: 112 VASLRSLMRGENTLHPKASSEL---------LKAPAEPAPHTINQLTPREQEVLAELTKG 162 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 K++ EIA L ++ TV +I++I K A + R+ A YAV++ + Sbjct: 163 KSNREIASALFVTEKTVKTHISNIFIKLAVQDRTQAALYAVKHGL 207 >gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] Length = 260 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-------GRIILRDRLWEI 162 CP + ++ G+ N + +++ + +G L + + + + R + Sbjct: 110 CPAVADMLQDAEK-HGLGNIFIAVSARGQKGAVGCSLFSFEISPDEDREQFVAKLRPRLL 168 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L + + DV LT REV+CL W + GKT EIA IL I+R TV Y+ Sbjct: 169 SLSGIIHSALCGCKDVATVSSL-LTPREVDCLRWAANGKTDGEIAEILNIARWTVVTYLQ 227 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K R+ A+A A+ I+ Sbjct: 228 NAKIKLNCSNRTSAVATALSLGII 251 >gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis C6786] Length = 345 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR+GA A Sbjct: 277 ALAERFGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATA 336 Query: 239 YAVR 242 A++ Sbjct: 337 AAIK 340 >gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 241 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Query: 140 IRIGLMLLFPKGRIILRD-------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 +G++ L + R+ + A + + LT REVE Sbjct: 127 GGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVE 186 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W ++GKTS EI+ IL IS +TVN ++ + + K T ++ A+ A ++ Sbjct: 187 VLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240 >gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kronotskyensis 2002] gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 211 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 11/157 (7%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 +R + + +N+ + + + T E + + Y + D I Sbjct: 56 IRMPVMDGIEGTFNIKTKFPNVKVIILTTFCEEDYIEKSLSFGADGYILKSSDAKHIVNS 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKT 202 ++ + ++ ++ +A Y +++ K ++ K LT RE+E IS+G + Sbjct: 116 ILSVLDGKVVMDKE-------IALYISDVLKRTSKQYFEKTQNLTERELEIAKLISQGYS 168 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + EIA +L IS TV NYI SI++K K R+ Y Sbjct: 169 NKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] Length = 209 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 13/159 (8%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147 + + + + + + + E+ +D + Y T + I + Sbjct: 60 DMDGVEATTQIKKDLPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKT 119 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 120 YRGESVFEPEVLVKM------RNRMKKKAELYE----MLTEREMEILLLIAKGYSNQEIA 169 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 211 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 12/160 (7%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 +R + D + + + VF T + G+ + F A Sbjct: 62 LRMPIMEGADAIAAIRAKFKQARIIVFSTYDGDENIYRGLRSGAKGYIFKGAEPH----E 117 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R + + + + +AA A S L+ RE+E L I++GK++ EI Sbjct: 118 LLKAIRTVHKGQKYIPPNIAAKLAERLGSS--------PLSNRELEVLRLIAKGKSNSEI 169 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L I+ +TV ++ +I K R+ A+ A+ IV Sbjct: 170 SQDLSIAESTVRFHLKNIFSKLDVGDRTQALVTALNRGIV 209 >gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 5/185 (2%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPP 123 D + +V + P ++ + + D + ++ + + T E+ Sbjct: 39 DAADGAEAVRVVEALQPDVVLMDLRMPGMDGLEAITQIQEQWPHIAVIILTTYDEDDLML 98 Query: 124 AGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 G+ C L + +G I L+ + L+ A Sbjct: 99 RGLRAGACGYLLKDTDRETLFHAIRTAARGDIFLQPEVMARILVRTTDAFHPTPSRSQAE 158 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ELT RE + L ++ G+ S EIA LGIS TV +++ SI K +R+ A+A + Sbjct: 159 GESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGI 218 Query: 242 RNNIV 246 + ++ Sbjct: 219 KRGLL 223 >gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 454 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L ++ G T+ +IA L IS NTV ++ +I K +R+ A YAVR+ Sbjct: 8 QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRSG 67 Query: 245 IV 246 IV Sbjct: 68 IV 69 >gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 236 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 6/180 (3%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ +V D + + ++ K R + V+ + + Sbjct: 49 ERLFPDVVLVDINLPGLNGLEVARVIKRREP--RTGIIVLSVYEDEEQLFQAIKVGAAAF 106 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--YQANMFKSYDVHWGKDF--EL 186 S + + + +I L + A +Q + D G L Sbjct: 107 TSKDISPEELVHMIREVARGRYLINDAVLAHPNVAARVLHQFRELAATDEEDGASLFAPL 166 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ A++ + Sbjct: 167 TSREIEILDCIARGLSNKEIASELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKGWI 226 >gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] Length = 213 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 218 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 14/192 (7%) Query: 59 SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHT 115 S F +V E+ L+ + P ++ + + + V + + + Sbjct: 29 STFEVVAEGQSGEEALE-LTEKWMPDIILMDIQMPGMGGLEATKQVKDKFPYVKIVMVTV 87 Query: 116 LPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 + + Y + L + + R+ LA Sbjct: 88 SDDIAHLFDALKRGAQGYLLKNLNPESWHEYLKAIAVDEAPMSRE-------LAFRILKE 140 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F + + LT RE E L ++EG ++ +I+V L IS NTV N++ +I++K + Sbjct: 141 FSQQEKPDPGNSPLTAREREILGRVAEGLSNRDISVALCISENTVKNHLKNILQKLHLEN 200 Query: 233 RSGAIAYAVRNN 244 R YA Sbjct: 201 RVQLTRYAFEQG 212 >gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis EO147] Length = 347 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR+GA A Sbjct: 279 ALAERFGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATA 338 Query: 239 YAVR 242 A++ Sbjct: 339 AAIK 342 >gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 237 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R+ + A + + LT REVE L W ++GKTS EI+ IL IS +TV Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N ++ + + K T ++ A+ A ++ Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31] Length = 228 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 15/206 (7%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV------RCMALSEKDKYYNVL 102 + L + G ++ E LD I P D+V + E K Sbjct: 22 LVRLQQETGLE---IIAEAEDGETALDFI--KQQPVDVVLLDVGLPGLGGIETCKQIKQQ 76 Query: 103 QRPTELFCPVFHTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 + H+ I+ YC ++ + L + E Sbjct: 77 NPQLPILILTSHSQKPLISKLIEAGAQGYCLKGIVAEKLVLALRSVAAGASWWDETATRE 136 Query: 162 I-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 I +AA Q+ S + D LTGRE+E L+ +++GKT+ EIA L I+ TV + Sbjct: 137 IRSSIAASQSQ--PSTENLIKSDHPLTGRELEILSLLAQGKTNQEIATALYITPGTVRVH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + +I+ K R A+ A++ ++ Sbjct: 195 VHAILHKLDVSDRHQAVVLALQKRLI 220 >gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 244 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 17/234 (7%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS---IVSSDWPFDL 86 +LL + + ++ VG H LL + D + +P + Sbjct: 10 RELLQSIHRTATPENVRDQLLKKLAGVGVEHVLLATLRICDAVPCDRRPTVFIGTYPDEW 69 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 R + V++ E T P+ I R + + Sbjct: 70 ARRYYARNYILHDPVVRGVAERASGFAWTDPDLIASDDREARRVLDEAGEFGLHEGFTLP 129 Query: 147 LF------------PKGRIILRDRLWEIGLLAAYQAN--MFKSYDVHWGKDFELTGREVE 192 L + + + L+ Y + + L+ RE E Sbjct: 130 LLTLEGDTAGVSFVGERLDLSPAVRGMLTLVGTYALGQVLLLANGQAEALSEPLSPRERE 189 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W ++GK+ EI +GIS + ++ ++ RK T +R+ A+A +R I+ Sbjct: 190 SLQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 243 >gi|307324713|ref|ZP_07603919.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889595|gb|EFN20575.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 3/147 (2%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V+ RP L F + + A + + ++ ++ Sbjct: 77 VIHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR 136 Query: 161 EIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+A + D + LT RE E L I+ G ++ EIA L ++ TV Sbjct: 137 R--LIADFARQRPAPRRDGPSARRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKT 194 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I ++ K + R+ A+ +A + +V Sbjct: 195 HIGRVLAKLGLRDRAQAVIFAYESGLV 221 >gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 17/160 (10%) Query: 104 RPTELFCPVFHTLPENITPPAGM-----DNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 RP + V + + I+ A + ++R L+ V R + + +L+D Sbjct: 47 RPAVVLMDVMMPVLDGISATASLRHCCPESRVIILSNHVERSTVIHAVKAGAVGYLLKDA 106 Query: 159 LWEI-----------GLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEI 206 L E + A QA++F ++V LT RE + L +++G+++ +I Sbjct: 107 LAEELCHAIKEVVQGNVHFAPQASIFLLHEVREPNLPENLTEREADVLRLLAQGRSNKDI 166 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L I +TV ++ I+ K ++R+ A YA R N+V Sbjct: 167 ARHLHIVEDTVKTHVRHILSKLGVQSRTQAALYATRLNLV 206 >gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125] gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125] Length = 217 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ML + + + M + +LT RE + L +++G+++ Sbjct: 111 MLAETIRAVCSGESRLHPKVTKHVLTRMNGDESEEEKRLRDLTNREKDVLRELAKGQSNK 170 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L IS TV ++++I K R+ A +A++ I Sbjct: 171 EIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKYGI 211 >gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 306 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----ITPPAGMDNRYCSLTFDVARIRI 142 V + + D + + R + + P+ I P R + +A R+ Sbjct: 147 VAGLGVLLVDAHGRIAWRSPQAERWLAACGPDGPGNVIAPAEAGTERVFQMPGPLAPQRL 206 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 L L P G + + +W + + ++ S LT RE E L+W+++GKT Sbjct: 207 TLRSLGPAG---MGETMWLLEVQRGDGSDGAASPSRLSAA--ALTPRETEVLSWLAKGKT 261 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +I ILG+S TVN ++ I K +TR Sbjct: 262 NRDIGDILGVSPRTVNKHLEHIFEKLGVETR 292 >gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 2/144 (1%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 +RP L F + + + + + + ++ Sbjct: 70 ERPRVLILTTFDLDDYAFAALKAGASGFLLKDVPPSDLISAIHSVHSGDAVVAPSTTRR- 128 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL + ++ V LT RE E L ++ G ++ EIA L ++ TV ++ Sbjct: 129 -LLERFAVHLPSPGVVEQAALGGLTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLG 187 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R+ + YA + +V Sbjct: 188 RVLAKLGLRDRAQVVVYAYESGLV 211 >gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 213 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 10/213 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + + ++ E +G + Q ++ D +V D + + Sbjct: 7 LVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +++ K Y+ + L F + + Y ++ ++ ++ Sbjct: 66 ATKRIKQYDETIKI--LMLSSFSEQDYVLPALEAGADGYQLKEVQPDQLVASIVAVYQGN 123 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 LL K LT RE E L I++G+++ EIA L Sbjct: 124 ANFHPK--VTPALLGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+ TV ++++++ K R+ A YAV++ Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144] gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144] Length = 209 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 13/156 (8%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150 + + + ++ + + E+ +D + Y T + I + + Sbjct: 63 GVEATTEIKKDLPQIKVVMLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 215 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 10/213 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + + ++ E VG + Q ++ D +V D + + Sbjct: 7 LVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEALTFIQTERPD-VVLMDLSMPKMDGIE 65 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +++ K Y+ + L F + + Y ++ ++ + Sbjct: 66 ATKRIKQYDETIKI--LILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAVHEGN 123 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 L K LT RE E L I++G+++ EIA L Sbjct: 124 ANFHPK--VTPALFGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+ TV ++++++ K R+ A YAV++ Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1] gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1] Length = 216 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A N F+ + +D LT RE+E L + EG T+ EI+ L I T ++++I Sbjct: 131 VADKMMNRFRPQERKLHED--LTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K R+ A YA RN I+ Sbjct: 189 LSKLGVADRTQAAIYANRNGIL 210 >gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 242 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 22/234 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVRCM 90 + ++ R+ + + + ++ + + S+VS S+ P D Sbjct: 11 FLDIGTASDHATFKSRLVSFAQNLDFQ--IVQAVLMIKRPSQPSVVSRLSNLPSDFAEAS 68 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----MDNRY-----CSLTFDVARIR 141 + VLQR P + + AG RY S++ + R Sbjct: 69 MDEADSRRDPVLQRLRTASVPFVYDQTTYVEAGAGDLWETQARYGFRTGISMSLHMPGGR 128 Query: 142 IGLMLLFPKGRIILRDR-----LWEIGLLAAYQ----ANMFKSYDVHWGKDFELTGREVE 192 L + + + +R + ++ LLA + A + K +LT RE E Sbjct: 129 QFLFGVDREQALPADERELMRLMADLQLLAVHAQETAARVMMPKLDSLPKRPKLTPRERE 188 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W EGK++ I IL +S +TV ++ + M K ++ A+ A+ ++ Sbjct: 189 VLQWTREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAMEIGLL 242 >gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 242 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVR 88 + + + +G F+L + +D + V DW D + Sbjct: 11 QVALAVERATTLAGVQDALRPFAMRLGYDRFVLFSVRAVADALIDRVYWVEGDWWGD-GQ 69 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------ITPPAGMDNRYCSLTFDVARI 140 + V + E P F T + + PAG L + Sbjct: 70 AIDARTYLTRCPVTRHVLEARAPFFWTKTCDEKGERYRVVRRPAGAGVHGLQLPVFGPQG 129 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWIS 198 G M L + + ++A + + +L+ RE E L W + Sbjct: 130 LEGAMSLGGARIDSSPEARLMLAMVATAAFHTARRLLQPPLAASATQLSAREREVLRWTA 189 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G +IA LG+S TV N++ + R+ T + AI A+ N Sbjct: 190 AGSRQADIAATLGLSERTVENHLRAARRRLGVATTAQAIKIALHNG 235 >gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 212 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 16/132 (12%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V T+ + L + + G +L P IL D + Sbjct: 93 VTETIKAGADGYLLKNVESEELINTIQAVHKGQSVLDPSVTEILFDNIKS---------- 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K+ LT +EV+ L IS GK + EIA I+ IS TV NY+++I++K Sbjct: 143 ------QQPKKEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVS 196 Query: 232 TRSGAIAYAVRN 243 R+ A +Y +RN Sbjct: 197 NRTEAASYWMRN 208 >gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 242 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 14/225 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD-WPFDLVRCMA 91 + ++ + E G +FL+ + + +D W + Sbjct: 13 ITKIDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILADGWSPEWHHRYV 72 Query: 92 LSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLTFDVARIR---IGLMLL 147 + + + P + LP P + F + I + L Sbjct: 73 TEAYFLHDPCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMKEGICIPIHVPLA 132 Query: 148 FPKGRIILRDRLW----EIGLLAAYQANMFKSYDV-----HWGKDFELTGREVECLTWIS 198 P + DR+ + L+ + F+S + LT RE E L W + Sbjct: 133 GPGVVTMASDRMEVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPLTARERELLEWSA 192 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +GK++D+IA ILG++RNTV ++ +I K + AI A+R Sbjct: 193 QGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRR 237 >gi|332202293|gb|EGJ16362.1| response regulator [Streptococcus pneumoniae GA41317] Length = 210 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|322374884|ref|ZP_08049398.1| DNA-binding response regulator VraR [Streptococcus sp. C300] gi|321280384|gb|EFX57423.1| DNA-binding response regulator VraR [Streptococcus sp. C300] Length = 210 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ +LT RE + L Sbjct: 107 ADELLHAVRKVASGELAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + Y + + + +I ++ + + N + Sbjct: 94 IREGADGYLLKDSPSKDVIDAIRTVAGGESVIPPGMTKKLLSMHKQENNQ---------E 144 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+E L + EG ++ +IA L IS TV ++++I +K K+RS AI +AV+ Sbjct: 145 DKTLTPREMEVLLVLVEGLSNKDIATRLYISDKTVKIHVSNIFKKFDVKSRSQAIIFAVQ 204 Query: 243 NNIV 246 NN+V Sbjct: 205 NNLV 208 >gi|289168573|ref|YP_003446842.1| response regulator [Streptococcus mitis B6] gi|288908140|emb|CBJ22981.1| response regulator [Streptococcus mitis B6] Length = 210 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ +LT RE + L Sbjct: 107 ADELLHAVRKVAAGKLAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 10/134 (7%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D + V + G L P + L +RL E + Sbjct: 99 FPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEP------ERGQ 152 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S +V G LT RE E L I+EG ++ EIA L +S TV +I ++ KT K Sbjct: 153 AASSEVPDG----LTAREAEVLVLIAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKD 208 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA +V Sbjct: 209 RAQAVRYAYGKGLV 222 >gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 211 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 76/213 (35%), Gaps = 10/213 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + + ++ E +G + Q ++ D +V D + + Sbjct: 7 LVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 ++ K Y+ + L F + + Y ++ ++ ++ Sbjct: 66 ATKLIKQYDETIKI--LMLSSFSEQDYVLPALEAGADGYQLKEVQPDQLVASIVAVYQGN 123 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 LL K LT RE E L I++G+++ EIA L Sbjct: 124 ANFHPK--VTPALLGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+ TV ++++++ K R+ A YAV++ Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W] Length = 192 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 9/159 (5%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLF 148 + + + E+ V E + Y D R L+ Sbjct: 58 MDGIEATKLISAELPEIKVVVLTASEEEEDLFEAIRSGASGYIIKNIDPDRF-FELLEAA 116 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT-SDEIA 207 +G L L L Q + D ELT RE E L + +G T + EIA Sbjct: 117 YQGEPALPPNLARKVL----QEFAQPKIERKKRPDAELTDREREILELLVQGITSNKEIA 172 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +TV ++ +I+ K + R+ +AYA+++ ++ Sbjct: 173 ERLFLSESTVKYHLHNILNKLHLQNRAQVVAYALQHGLI 211 >gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 230 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 39/59 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REVE L +++G+++ +I+ +L IS TV N+++S++RK R+ A+ A+R Sbjct: 168 LSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDAIRRG 226 >gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 13/231 (5%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R LLA + + + +G ++ V + + S++P Sbjct: 5 RESLLASLEQVKTASEAFDNLAPAVRALGFEYYAYVLRITIPITRPAIMGWSNYPEAWRT 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF------DVARIRI 142 + VL P+ P D L + R + Sbjct: 65 HYTQRDYQHADPVLHYGQACTRPMPWPGPLPGYDAFWRDAAAFGLCYGWSQTTRDHRGAM 124 Query: 143 GLMLLFPKGRIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 G + L G I D L + DV L+ RE + L Sbjct: 125 GTVSLVRGGPPIAPDELRRTEPEMIWFCQFVHATMSNLIVSDVMPSGAMRLSLREKQVLH 184 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKT+ E+AVIL +S V +I + + K ++ A A ++ Sbjct: 185 WTAEGKTAAEVAVILQLSERNVGFHIQNAIDKLDAANKTHATVKAAMLGLI 235 >gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] Length = 237 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 16/233 (6%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R L + A + +G H F ++ SD+P Sbjct: 5 REIYLDLFATAKSGHDVFRELSAASRELGFEHCSFGMRVPFPISNPRYVLQSDYPEAWKE 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDNRYCSLTFDVARI 140 +Q P+ G+ +C + Sbjct: 65 RYIRHNYFAVDPTVQHGLTQSLPLTWQADGQTESTEFWEEAAHHGLRYGWC-MPACCQNG 123 Query: 141 RIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSY---DVHWGKDFELTGREVEC 193 IGL+ + I L + + LA+ + ++ + ELT RE E Sbjct: 124 TIGLVTMARSDEPIEERELLCKEYRMLWLASAVNSAMNAHLLAQSAPEYEVELTCREREA 183 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GKT EI +I+ + TV ++ + MRK ++ A A ++ Sbjct: 184 LKWSAAGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAAMLGLL 236 >gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 232 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 9/175 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +V++ P L+ + + D V + + V T ++ + Sbjct: 58 ELVAALAPDVLLTDLRMPAGDGVSATRRVREGRSGTAVVVLTTYVDDDAVVDAIAAGASG 117 Query: 133 -LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190 L+ D IG L + + +LA A+ V + + LT RE Sbjct: 118 WLSKDADAEAIGRALRSAADGV----STVDAAVLARLVASRPAGAPVAEREPPDGLTPRE 173 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 VE L I+EG ++ EIA L + TV ++ + K + R+ A+ YA R+ + Sbjct: 174 VEVLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228 >gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 209 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] Length = 213 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 211 Score = 99.3 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 10/213 (4%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L+ + + + ++ E +G + Q ++ D +V D + + Sbjct: 7 LVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +++ K Y+ + L F + + Y ++ ++ ++ Sbjct: 66 ATKRIKQYDETIKI--LMLSSFSEQDYVLPALEAGADGYQLKEVQPDQLVASIVAVYQGN 123 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 LL K LT RE E L I++G+++ EIA L Sbjct: 124 ANFHPK--VTPALLGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I+ TV ++++++ K R+ A YAV++ Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 192 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 9/177 (5%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 F +++ +V D + + +++ K Y+ + L F I Sbjct: 21 HFMQKERPDVVLMDVSMPKMDGIEATKRLKQYDETIKV--LILSSFSEQDYVIPALEAGA 78 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y ++ ++ + + + A +V LT Sbjct: 79 DGYQLKEVQPEQLVASIIAVHQGNAN------FHPKVTPALMGRSAVKKEV-ENPFSMLT 131 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 132 KREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai] Length = 243 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE ECL WISEGKT+ EI+ IL S TV+ +I ++ K T RS +I+ ++ Sbjct: 177 QLTPREKECLAWISEGKTTWEISKILDCSERTVSFHITNLQTKLGTNNRSQSISKSILTG 236 Query: 245 I 245 + Sbjct: 237 V 237 >gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei] Length = 241 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R+ + A + + LT REVE L W ++GKTS EI+ IL IS +TV Sbjct: 152 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 211 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N ++ + + K T ++ A+ A ++ Sbjct: 212 NFHVKNAILKLRTANKTAAVVRAAMLGLL 240 >gi|119718601|ref|YP_925566.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119539262|gb|ABL83879.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 1006 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 11/124 (8%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDV----------HWGK 182 +++AR+R L + + R L ++ +A+Q D Sbjct: 882 AYELARVRTALAGILRATGDLAGGRELGDLARASAHQLGARPLLDELRSIGSAPARTESV 941 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L +++G+++ EIA L IS TV+ ++++I+ K R+ A A A R Sbjct: 942 PDALTPRESEVLQLVAQGRSNGEIAKQLFISAKTVSVHVSNILGKLDASGRTEAAAIARR 1001 Query: 243 NNIV 246 ++ Sbjct: 1002 RGLI 1005 >gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 3/114 (2%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 V IG +L + + ++ + +LT RE E Sbjct: 94 AVRAGAIGFLLKNAEADELRSAVKGAAAGRIQVSPDATSRLMGQVRAPSGPEQLTEREAE 153 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LT ++ GK++ EIA L I + TV Y++ I+ K +R+ A YAV++ +V Sbjct: 154 VLTMLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207 >gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 217 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 31/182 (17%) Query: 69 FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 Q LD + + +WP V + + +D Y VF + Sbjct: 55 IQMPGLDGVQATKTILQEWPQAKVIILTMYRQDAY-------------VFEAVKAGARGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 D L + R+ G +LL + L R+ + ++A +S +H Sbjct: 102 LLKDTDAKELIEAIRRVHAGEVLLDAE----LAGRI-----IQDFRARKEQSLPLHA--- 149 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ RE++ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 150 -ELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIRE 208 Query: 244 NI 245 + Sbjct: 209 GL 210 >gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 228 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + L V + G L P +A Sbjct: 103 VFALLEAGAAGYLLKNASEDELLGAVRAVAAGESALHP--------------AVARKVLE 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F ++ + L+ RE+E L + G+T+ EIA L IS TV ++A+I K Sbjct: 149 RFSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 208 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ Y ++ + Sbjct: 209 SRTEAVLYGIKRGWI 223 >gi|303326587|ref|ZP_07357030.1| putative twin-arginine translocation pathway signal [Desulfovibrio sp. 3_1_syn3] gi|302864503|gb|EFL87434.1| putative twin-arginine translocation pathway signal [Desulfovibrio sp. 3_1_syn3] Length = 598 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +R R A F+ D WG L+ RE++ LT +S G ++ +IA L +S Sbjct: 84 IRMRPERTRFPGARVVMQFRRIDPPWG----LSLRELDVLTLLSAGLSNPDIAHELFLSP 139 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ +I K A K R A+ A+ + +V Sbjct: 140 RTVAKHVENIFIKLAVKNRVHAVRLALDHGLV 171 >gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELYITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 5/185 (2%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPP 123 D + +V + P ++ + + D + Q + + + T E+ Sbjct: 39 DAADGAEAVRVVEALQPDVVLMDLRMPGMDGLEAITQIREQWPHIAVIILTTYDEDDLML 98 Query: 124 AGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 G+ C L + +G I L+ + L+ A Sbjct: 99 RGLRAGACGYLLKDTDRETLFHAIRTASRGDIFLQPEVMARILVRTTDAFHPTPSRSQAE 158 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ELT RE + L ++ G+ S EIA LGIS TV +++ SI K +R+ A+A + Sbjct: 159 GESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGI 218 Query: 242 RNNIV 246 + ++ Sbjct: 219 KRGLL 223 >gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 301 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 7/79 (8%) Query: 171 NMFKSYDVHWGKDFEL-------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++F+ + EL T RE + L WI+ GKT+ EIA IL +S TVN ++ Sbjct: 217 HLFRLLHHDSDAELELLKNALHVTHREAQVLVWIAHGKTNREIAQILELSPRTVNKHLEQ 276 Query: 224 IMRKTATKTRSGAIAYAVR 242 I RK + R+ A A ++ Sbjct: 277 IFRKLGVENRTAAAAMVIQ 295 >gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 49/100 (49%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L + ++ + ++ LA + EL+ RE + + W ++GKT+ EI Sbjct: 163 LSEQELLLKESAMIDLADLAHLHMTECFVLEQFPESKTELSQRERDVIRWCADGKTNAEI 222 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A+IL IS ++VN ++ + ++K ++ A+ A ++ Sbjct: 223 AMILNISTSSVNFHVLNFIKKLDASNKTHAVMKAASFGLL 262 >gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 212 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R + R +A+ + ++ + L+ RE E L +++G ++ EI Sbjct: 114 LFTAVRAAAQGRTVLSPAVASRLVSAVRAPGAPGNE--TLSAREREVLALVAKGTSNREI 171 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ + K K R+ A+A A I+ Sbjct: 172 ARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 211 >gi|322387271|ref|ZP_08060881.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141800|gb|EFX37295.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 210 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197 R ++ + + G LA Q K + H ELT RE + L I Sbjct: 97 ARGYMLKTSSADELFHAVQKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLI 156 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|239983037|ref|ZP_04705561.1| two-component system response regulator [Streptomyces albus J1074] gi|291454869|ref|ZP_06594259.1| two-component system response regulator [Streptomyces albus J1074] gi|291357818|gb|EFE84720.1| two-component system response regulator [Streptomyces albus J1074] Length = 220 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 19/194 (9%) Query: 71 EQKLDSIVSSD-WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 +Q++ S V+ W + + S + + P ++ H LP+ + R Sbjct: 27 DQRVRSTVTRHLWALGVRDVIEASSIAEARPRVGNPRDICVADVH-LPDGSGLTLLSETR 85 Query: 130 YC---------------SLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANM 172 ++ +A G ++ + I L R IG AA Sbjct: 86 AAGWPNGLALSAADDIGAVRNALAGGVKGYVVTGTRTNIGLPTRPGAAPIGSAAARMHRR 145 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T Sbjct: 146 PPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGD 205 Query: 233 RSGAIAYAVRNNIV 246 R+G +A A+R I+ Sbjct: 206 RAGMVAVALRTGII 219 >gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 215 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|148994461|ref|ZP_01823662.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168488084|ref|ZP_02712283.1| response regulator [Streptococcus pneumoniae SP195] gi|168490693|ref|ZP_02714836.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|168494570|ref|ZP_02718713.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225860419|ref|YP_002741928.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|147927210|gb|EDK78245.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183572895|gb|EDT93423.1| response regulator [Streptococcus pneumoniae SP195] gi|183575039|gb|EDT95567.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183575541|gb|EDT96069.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225726539|gb|ACO22390.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|332075238|gb|EGI85708.1| response regulator [Streptococcus pneumoniae GA17570] Length = 210 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|332142261|ref|YP_004427999.1| two-component response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327552283|gb|AEA99001.1| two-component response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 298 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +T RE E L WIS GKTS EI+ IL +S T N ++ I +K ++ A A A+ Sbjct: 233 EKLPITKRESEVLYWISFGKTSWEISQILDMSPRTANKHLEQIYKKLGVDNKTSAAAIAL 292 Query: 242 R 242 R Sbjct: 293 R 293 >gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 227 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 13/176 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129 +VS+ P L+ + + +KD V P + F + + Sbjct: 43 EMVSALKPDVLLFDIHMPKKDGIQVVKDLKAMGCSPRFVAITAFDDDDHITALSSVGIDA 102 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y +A + + ++ + +A + F LT R Sbjct: 103 YVLKASGMAELLSAIRSVYRGHSYVDPK-------VAGKLLSTFNRRREERDLLSRLTPR 155 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E+E L WIS+G + EIA + +S TV N+++ I++K R+ A +A + + Sbjct: 156 EMEVLYWISQGLNNGEIARKMVLSEKTVKNHVSHILKKLDLVDRTQAAVFAWKRGL 211 >gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 22/223 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDLFQE------QKLDSIVSSDWPFD 85 + R++ ++ V + + E GA F + + QE I+ D Sbjct: 1 MNRILIVEDQVIVRQGLRMIIEQDGA--FSVAGEAENGQEAIEKMESHGADIILMDIQMP 58 Query: 86 LVRCMALSEKDKYYNVLQRPTE--LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 ++ + + + + P L F+ + N + T D R+ Sbjct: 59 VMNGIEATRMIRK----RWPAVKILILTTFNDEDYALQTLREGTNGFLLKTSDGPRLLQS 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + G I +AA + H + LT RE + I GKT+ Sbjct: 115 IRSCLEGGISIHE-------QVAAKVMPKLLDHSCHEEAEVPLTPRERDIARLIGHGKTN 167 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV N++ I++K + R+ +AV+N+I+ Sbjct: 168 KEIANELYLSVGTVKNHLTQILQKLDLRDRTQLAIFAVKNDIL 210 >gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + E L+ + M K + D LT RE++ L ++ G ++ EI L IS TV Sbjct: 124 IAEDSLMNRVRGAMAKRQEAKHS-DIPLTNREMQVLRHLALGLSNREIGRSLTISIETVK 182 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I+RK R+ A +AVR +V Sbjct: 183 EHVQNILRKIDVTDRTQAAVWAVRRGLV 210 >gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 209 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 211 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++I+ K R+ A YAV++ Sbjct: 151 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1710b] gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 237 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R+ + A + + LT REVE L W ++GKTS EI+ IL IS +TV Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N ++ + + K T ++ A+ A ++ Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236 >gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 20/215 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D + + + A+ E+ L VR + + V ++ P V + Sbjct: 19 DAQPDIEVVAEAGDGRQAVDAVREHAPDVLLLDVRMPVMDGLEAARRVCAEHPACKVIML 78 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + D Y VF L + D R L V + G LL P Sbjct: 79 TTFDVDDY-------------VFDALYAGASGFLLKDVRRDDLVHAVRVVDSGEALLAPS 125 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209 + R + E+ A A G+ E LTGRE E L ++ G ++ EIA Sbjct: 126 ---VTRRVIGEVTARKAAGAAAVPRP---LGRLLESLTGREAETLKLVARGMSNAEIAAE 179 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L +S +TV +++++++K + R A+ +A Sbjct: 180 LVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEAG 214 >gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 209 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E ++ D D + + ++K N ++ + E + P + Sbjct: 46 EILDPDVILMDLVMDRLDGIGATQKILAKNPERK---ILILTSFIDDEKVFPALAAGAKG 102 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L A + G +L D + E +A + + YD +L+ RE Sbjct: 103 YILKTSQAADIASAIRKVANGEDVLSDAVKEK--IAQQKHRKHELYD-------DLSKRE 153 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E L ++ G ++ EIA L IS TV ++++I K R+ A YA+++++V Sbjct: 154 LEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|227823797|ref|YP_002827770.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] gi|227342799|gb|ACP27017.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 246 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 24/239 (10%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 LA + + L + G + +VR E L +++ WP + Sbjct: 8 QFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPESWPQIY 67 Query: 91 A-------------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 L + + E++ A + F V Sbjct: 68 IRKKYVVIDPTIRYLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGDIFPV 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF----------KSYDVHWGKDFELT 187 R GLM G ++ E+ L A +F ++ + ++T Sbjct: 128 -HGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMT 186 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++++G TS++I +L IS +TV+ Y+ I K K R A+A A R ++ Sbjct: 187 RREMEALNYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHAVAIAFRLGLI 245 >gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 10/174 (5%) Query: 78 VSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCS 132 V+ P ++ + + + D +L+ + V T ++ + Sbjct: 47 VAEHKPDLVLMDLRMKQVDGIEATRLLRAASGPPVLVLTTFDDDELLSGALRAGAAGFIL 106 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + + + + LAAY+ K LT RE+E Sbjct: 107 KDSPAEDLIWAVRAVAGGDGFLDPAVTARV--LAAYRTAPSARQKQASDK---LTARELE 161 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ G + EIA L IS TV ++I I K + R+ AI YA +V Sbjct: 162 VLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQGVV 215 >gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 239 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + L V + G L P +A Sbjct: 114 VFALLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPS--------------IARKVLE 159 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F + +L+ RE+E L + G+T+ EIA L IS TV ++A+I K Sbjct: 160 RFSVASTPTPPEDDLSPRELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 219 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ + ++ + Sbjct: 220 SRTEAVLHGIKRGWI 234 >gi|239945114|ref|ZP_04697051.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991577|ref|ZP_04712241.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448577|ref|ZP_06587967.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351524|gb|EFE78428.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 220 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 55/130 (42%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 P + A D + R + IG AA Sbjct: 90 PNGLALSAADDIGAVRNALAGGVKGYVVTGTRTNIGHPARPGVAPIGANAARMHRRPPGS 149 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G Sbjct: 150 PSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGM 209 Query: 237 IAYAVRNNIV 246 +A A+R I+ Sbjct: 210 VAVALRTGII 219 >gi|182435268|ref|YP_001822987.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775907|ref|ZP_08235172.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178463784|dbj|BAG18304.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656240|gb|EGE41086.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 220 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R + IG AA H G EL+GREVE L ++EG+++ I V +G+S Sbjct: 129 RPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++A I RK T R+G +A A+R I+ Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219 >gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 209 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 17/135 (12%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L ++ + + ++ G +L D + E +A + Sbjct: 92 VFPALAAGAKGYILKTSQAADIASAIRKVANG--------EDVLSDAVKEK--IAQQKHR 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + YD +L+ RE+E L ++ G ++ EIA L IS TV ++++I K Sbjct: 142 KHELYD-------DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVS 194 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YA+++++V Sbjct: 195 DRTQATIYAIQHHLV 209 >gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4] gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 260 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWGK 182 AG+ N ++ + + L P RI + +++ ++ + + H + Sbjct: 136 AGLKNGLSIPIREIGGSILLINLSGPSSRINTGTKRQLASVISNLFRLELDRLAPPHPNE 195 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ R+ +CL+W+++GKTS +I +IL ISR+TV +I MR +R A A Sbjct: 196 FIQLSPRQRQCLSWVAQGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAVIASN 255 Query: 243 NNIV 246 ++ Sbjct: 256 YGLL 259 >gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 242 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 6/180 (3%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ + +V D + + ++ K R + V+ + Y Sbjct: 47 ERLVPDVVLVDINLPGLNGLEVARVIKRREP--RIGLIVISVYEDDDQLFQAIKVGAAAY 104 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFEL 186 S + + + +I + + + + + L Sbjct: 105 SSKDVHPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPL 164 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ YA++ + Sbjct: 165 TSREIEILDCIARGLSNKEIASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 7/133 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D R + + + G L PK + L +R + Sbjct: 88 FTALQAGARGYLTKDARGEEIVQAIDAVMSGEAGLSPKVQRRLLER-------VTGSETV 140 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT RE E L I+EG ++ EIA L +S TV +I ++ KT + Sbjct: 141 PAPCALPSELPDGLTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARD 200 Query: 233 RSGAIAYAVRNNI 245 R+ A+ YA + Sbjct: 201 RTQAVRYAYGRGL 213 >gi|262203128|ref|YP_003274336.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262086475|gb|ACY22443.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 228 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EGK++ EI L ++ TV ++++++ K + R+ A+ +A N + Sbjct: 168 LTPREREVLDLVAEGKSNAEIGAELFVAEQTVKTHVSNVLAKLGLRDRAQAVVFAYENGL 227 >gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603] gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603] Length = 209 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150 + + + + + + E+ +D + Y T + I + + Sbjct: 63 GVEATTEIKKDLPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKTYHG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTDREMEILLLIAKGYSNQEIASAS 172 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 17/225 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 + R++ +D + L E VGA + E+ +V D Sbjct: 1 MIRVLLVDDQTLIRQGIAMLLELEPDLEVVGAVGDGRAAIEAV-ERLHPDVVLMD----- 54 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 VR + + +R ++ + T ++ G+ Y + Sbjct: 55 VRMPGMDGVTATRELRRRFPDVGVIILTTFDDDEYVFEGLKAGARGYLLKDISSEEMAEA 114 Query: 144 LMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + + +I R L + + LT RE++ L ++ G Sbjct: 115 VRTVARGEALIQPSIARKVVAEFLRLAVSAPAAPERMTPKSPNALTERELDVLKALARGM 174 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L I+ TV +I++I+ K + R+ A+ A + ++ Sbjct: 175 SNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219 >gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] Length = 303 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LTGRE E L WI+ GKT+ E A IL +S TVN ++ I K R+ A A++ Sbjct: 235 ELDLTGRESEVLYWIANGKTNRETAEILAMSPRTVNKHLEQIFSKLGVDNRTSAAGVALK 294 >gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 221 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 39/81 (48%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A A + + LT REVE L+ ++EG + IA L IS +TV +I SI Sbjct: 139 AMLCALPGQPRPPTEAPEQPLTPREVEVLSMLAEGLGNKTIARRLQISEHTVKFHIGSIF 198 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K +R+ A+ VR ++ Sbjct: 199 GKLEATSRTEAVTLGVRRGLI 219 >gi|307708226|ref|ZP_07644693.1| response regulator [Streptococcus mitis NCTC 12261] gi|307615672|gb|EFN94878.1| response regulator [Streptococcus mitis NCTC 12261] Length = 210 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197 R ++ ++ R G LA Q K + H +LT RE + L I Sbjct: 97 ARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLI 156 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 214 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 2/151 (1%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 S+ Y ++ + + + D + G Sbjct: 65 SDTLVYLKDNEKVLGTIMLNLGHDLDASELASWPHVKGIFGPNDSMEKLCQGLSAIISGE 124 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 L RL + L Y + V + ELT REV+ L + EG ++ EIA L I Sbjct: 125 NWLSRRLLD--QLVNYYKGKEVHHVVEPAIEVELTRREVQVLQMLKEGGSNMEIADSLFI 182 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 S +T+ +++ +I RK K R+ A ++A RN Sbjct: 183 SEHTIKSHLYNIFRKIEVKNRTQATSWAKRN 213 >gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 237 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 55/135 (40%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V ++ T D L V +R G + P + +RL + + A Sbjct: 100 VLASISAGATGYLLKDASDEDLRASVRELRAGGSPMSPVIARRVINRLRDANIPAPRAVR 159 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + L+ RE E L ++ G T EIA L IS NTV +I +I K A Sbjct: 160 AEPATPLLPEAVVALSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVN 219 Query: 232 TRSGAIAYAVRNNIV 246 +RS A+ A + ++ Sbjct: 220 SRSEAVFEAHKLGLL 234 >gi|15900310|ref|NP_344914.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15902388|ref|NP_357938.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|111657155|ref|ZP_01407935.1| hypothetical protein SpneT_02001620 [Streptococcus pneumoniae TIGR4] gi|116517140|ref|YP_815865.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148988147|ref|ZP_01819610.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148996798|ref|ZP_01824516.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006139|ref|ZP_01829868.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012131|ref|ZP_01833240.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|168485529|ref|ZP_02710037.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|168576782|ref|ZP_02722640.1| response regulator [Streptococcus pneumoniae MLV-016] gi|182683352|ref|YP_001835099.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|221231258|ref|YP_002510410.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225856124|ref|YP_002737635.1| response regulator [Streptococcus pneumoniae P1031] gi|225858242|ref|YP_002739752.1| response regulator [Streptococcus pneumoniae 70585] gi|298231095|ref|ZP_06964776.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254642|ref|ZP_06978228.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502187|ref|YP_003724127.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303255739|ref|ZP_07341782.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259462|ref|ZP_07345439.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262993|ref|ZP_07348927.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303267350|ref|ZP_07353209.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269845|ref|ZP_07355590.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307067043|ref|YP_003876009.1| CheY-like receiver/HTH DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126599|ref|YP_003878630.1| response regulator [Streptococcus pneumoniae 670-6B] gi|5830527|emb|CAB54571.1| response regulator [Streptococcus pneumoniae] gi|14971857|gb|AAK74554.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15457902|gb|AAK99148.1| Response regulator [Streptococcus pneumoniae R6] gi|116077716|gb|ABJ55436.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757373|gb|EDK64412.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147762495|gb|EDK69456.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763733|gb|EDK70667.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147926611|gb|EDK77684.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182628686|gb|ACB89634.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183571158|gb|EDT91686.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|183577579|gb|EDT98107.1| response regulator [Streptococcus pneumoniae MLV-016] gi|220673718|emb|CAR68214.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225722011|gb|ACO17865.1| response regulator [Streptococcus pneumoniae 70585] gi|225724954|gb|ACO20806.1| response regulator [Streptococcus pneumoniae P1031] gi|298237782|gb|ADI68913.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793635|emb|CBW36018.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301801302|emb|CBW33982.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302597299|gb|EFL64402.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302635884|gb|EFL66385.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639396|gb|EFL69854.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640613|gb|EFL71015.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643121|gb|EFL73409.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|306408580|gb|ADM84007.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483661|gb|ADM90530.1| response regulator [Streptococcus pneumoniae 670-6B] gi|332076827|gb|EGI87289.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077675|gb|EGI88136.1| response regulator [Streptococcus pneumoniae GA41301] Length = 210 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|332204409|gb|EGJ18474.1| response regulator [Streptococcus pneumoniae GA47901] Length = 210 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMIKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 219 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 157 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 215 >gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family [Leptospirillum rubarum] Length = 211 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F + D SL + +G + L P I L I +L Sbjct: 92 IFSSFSAGADGYCLKDTTVDSLLLAIRAAGMGSVYLDP---AIAHLALNRIRVL------ 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D L+ RE E L +S+G ++ EI I GIS +TV +I SI+ K + Sbjct: 143 ------DYPANDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSAS 196 Query: 232 TRSGAIAYAVRNNIV 246 TR+ A A++ ++ Sbjct: 197 TRADAAVKAIKKGLI 211 >gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp. aureus T0131] Length = 209 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 66/156 (42%), Gaps = 13/156 (8%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150 + + + ++ + + E+ +D + Y T I + Sbjct: 63 GVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 233 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 21/214 (9%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 A+ Y+ SHF + E I+ + P ++ + + + D Y + + P Sbjct: 20 AVQAYLEDSHFNVDVASNANEGWD--ILEKNLPDLVITDVMMPQVDGYQFLQKLREEPRF 77 Query: 108 LFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVAR-IRIGLMLLFPKGRIILRDRLWE 161 PV + +T + Y S FD + I LL + + + Sbjct: 78 KALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVNNLLERRASAQTANGDEK 137 Query: 162 IGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWISEGKTSDEIAVILG 211 +AA + + + GK+ +LT RE L ++ G + EIA L Sbjct: 138 TSDIAALAGQIAEIKAMLMGKNAIAKTTSVIKIDLTPREQSVLDLVARGLMNKEIARDLS 197 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S V Y++ + KT T +R+ + YA+ + + Sbjct: 198 TSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 231 >gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 12/217 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 ++ R+ + +G S +L+ E I++S + + L + + Sbjct: 15 VEDEAMIRSRLDLILSELGYSQDMLIFAKNLAEAM--QIIASQPISLALVDLGLPDGNG- 71 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGM-------DNRYCSLTFDVARIRIGLMLLFPKG 151 ++++ E+ + + + N Y D A + + + + G Sbjct: 72 ITLIEKLREIDESALILVISAWSTQQSLFASIKAGANGYVLKERDDAEVLMSIRSILRGG 131 Query: 152 RIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVI 209 I EI ++ + + G+D+ +LT RE E L +++G ++ EIA Sbjct: 132 APIDPFIAREILNQISTSNTPQTERVEQLDGQDYDQLTNRETEILNLVAQGLSNREIAEQ 191 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +SR TV ++I I RK + R+ A++ A I+ Sbjct: 192 LFVSRYTVESHIKHIYRKLSVSKRTKAVSTARSLGIL 228 >gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 301 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 7/79 (8%) Query: 171 NMFKSYDVHWGKDFEL-------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++F+ + EL T RE + L WI+ GKT+ EIA IL +S TVN ++ Sbjct: 217 HLFRLLHHDSDAELELLKTALHVTHRESQVLVWIAHGKTNREIAQILELSPRTVNKHLEQ 276 Query: 224 IMRKTATKTRSGAIAYAVR 242 I RK + R+ A A ++ Sbjct: 277 IFRKLGVENRTAAAAMVIQ 295 >gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 242 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 79/231 (34%), Gaps = 19/231 (8%) Query: 31 DLLARMIPLDCTVSWTMRM---YALTEYVGASHFLLVRWDLFQEQKLDSIVSSD-WPFDL 86 DL + +D S + E G +FL+ + + +D W + Sbjct: 8 DLFGAITKIDTARSAEAILHEFRLAMERYGLRNFLITGLPVPHGTDWQREILADGWSPEW 67 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPA-----------GMDNRYCSLT 134 E + + + P + LP GM C + Sbjct: 68 HHRYVSEEYFLHDPCVAQCRHSPEPFRWAELPAARLVARAKLVMDEAAEFGMKEGIC-VP 126 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVE 192 V G++ + + + I L + + LT RE E Sbjct: 127 IHVPLAGPGVVTMASDRMDVPPSAMPLIETLCVHTFRSLSGLGTPGDGYEPTPLTARERE 186 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L W ++GK++D+IA ILG++RNTV ++ +I K + AI A+R Sbjct: 187 LLEWSAQGKSTDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRR 237 >gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 211 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|306825821|ref|ZP_07459160.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432182|gb|EFM35159.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 210 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ +LT RE + L Sbjct: 107 ADELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] Length = 245 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 15/123 (12%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKD 183 D+ Y + +V + +I ++L+ + +L YQ N+ ++ + V G++ Sbjct: 132 DSIYFDESIEVNKEKIQMLLILTHDK-----------MLGLYQKNINENNELGKVPNGRE 180 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + RE E L W S GKT EIA+ILGI R+TV +I +++RK AI + Sbjct: 181 I-FSPRENEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIEL 239 Query: 244 NIV 246 ++ Sbjct: 240 KLI 242 >gi|149003489|ref|ZP_01828363.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|169833867|ref|YP_001693899.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194398711|ref|YP_002037067.1| response regulator [Streptococcus pneumoniae G54] gi|225853962|ref|YP_002735474.1| response regulator [Streptococcus pneumoniae JJA] gi|237649348|ref|ZP_04523600.1| response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821532|ref|ZP_04597377.1| response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|147758425|gb|EDK65424.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|168996369|gb|ACA36981.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194358378|gb|ACF56826.1| response regulator TCS03 [Streptococcus pneumoniae G54] gi|225723015|gb|ACO18868.1| response regulator [Streptococcus pneumoniae JJA] Length = 210 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550] gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 213 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|322390996|ref|ZP_08064501.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321142300|gb|EFX37773.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 23/204 (11%) Query: 55 YVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL----QR 104 +G FL ++ D+ Q QK + + P ++ + + E + L + Sbjct: 13 RLGLKSFLSMQTDIEQVLEAQNGQKGVELALKEKPDVIIMDIVMPELNGIDATLAILKEW 72 Query: 105 PTELFCPVFHTLPENITPP--AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P + L P Y T I + + I + Sbjct: 73 PEAKIVILTSYLDNEKIYPVLDAGAKGYILKTSSATEILQAVRKVAKGEFAIETE----- 127 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + KS H +LT RE + L +++G + IA L IS TV +++ Sbjct: 128 ------VSQKVKSRKNHAELHDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVS 181 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I+ K R+ A+ YA R+++V Sbjct: 182 NILSKLEVSDRTQAVVYAFRHHLV 205 >gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 209 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A + +S LT RE E L I++G+++ EIA L I+ TV ++++++ K Sbjct: 133 AILGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLE 192 Query: 230 TKTRSGAIAYAVRNN 244 R+ A YAV++ Sbjct: 193 VDDRTQAALYAVKHG 207 >gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 227 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 34/219 (15%) Query: 51 ALTEYVGASHFLL-------VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YN 100 A+ Y+ S F + W+L Q Q++ +V SD + + E D Y Sbjct: 17 AVQAYLEDSGFTVDVASNAKAGWELLQ-QRIPDLVISD--------IMMPEVDGYQFLAQ 67 Query: 101 VLQRPTELFCP-VFHTLP----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + + P + P VF T + I + Y S FD + + L + Sbjct: 68 LREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLLTRKEAKD 127 Query: 156 RDRLWEIGLLAAYQANM---------FKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + +I LA A + + + K + T RE L ++ G + EI Sbjct: 128 ANATTDIADLANQVAEIRAILMNRAPLPTQNTPTVK-IDFTPREQSVLDLVAVGLMNKEI 186 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A L S V Y++ + KT T +R+ + +A+ N + Sbjct: 187 ARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALENGL 225 >gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus A5948] gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30] gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122] gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus A5948] gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30] gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20] gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus] gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus] gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus] gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01] gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11] gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46] gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21189] Length = 209 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 66/156 (42%), Gaps = 13/156 (8%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150 + + + ++ + + E+ +D + Y T I + Sbjct: 63 GVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|297155058|gb|ADI04770.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 6/154 (3%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 + + + P + F + + + I + L+ Sbjct: 69 ATRQLRSTLEDPPKVVVITTFESDEHVYDALRAGADGFILKRTPSQAIAHAIRLVATGDS 128 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 ++ D + + A G LT RE E L ++ G ++ +IA L + Sbjct: 129 VLFPDAVRRL-----VAARPLPPVGPAAG-HAPLTARETEILRLMATGLSNPDIAGRLTV 182 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++++++ K + R+ A+ A + +V Sbjct: 183 SLETVKTHVSNLLTKLGAQNRTQAVILAYESGLV 216 >gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 209 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 209 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 230 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V +LT RE++ L +++G ++ EIA L I TV +I +I K + Sbjct: 155 RKPKQPVQAALHDDLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHITNIFNKLDVE 214 Query: 232 TRSGAIAYAVRNNI 245 R+ A YA + I Sbjct: 215 DRTQAAIYAHKQGI 228 >gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010] gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010] Length = 215 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D+ + + ++++ G + P I R L E+ + + Sbjct: 91 VIEALKAGASGYLLKDDDFMDINEAISQMVDGGAPISPS---IARYLLNELSIAEPAKPE 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S DV L+ RE E L +S+G TS EIA +L +S TV Y++++ +K + K Sbjct: 148 QKNSPDV-------LSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREYVSNVYKKLSVK 200 Query: 232 TRSGAIAYAVRNNIV 246 + A++ A I+ Sbjct: 201 NKMQAVSEATLLGII 215 >gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 213 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 237 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTGREVE 192 R GL+ L I L E+ ++ + + + LT RE + Sbjct: 123 GRRGLLTLTRGHEPISELELKELQYRLTWLTQISHHCMSEIITTKKMPETMITLTMREKD 182 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GKTS E + I+ I+ TVN +IA+ M+K ++ A A ++ Sbjct: 183 VLRWTAAGKTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAAMLGLL 236 >gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 204 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 12/168 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + E + +F + + T + Y Sbjct: 47 DLVMCDITMPEMNGHRVLEALRAEPATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + + + R + G A Q + LT RE E L Sbjct: 107 EPADLIAAVQARLRRAQAANPARPAK-GEAAPAQL-----------EPLGLTPREAEILF 154 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 W+++GKT+ EIA ILGI TV ++ ++ K + R+ A A A+ Sbjct: 155 WVAQGKTNPEIATILGIGLTTVKKHLEAVFVKLGVENRTSAAALALEQ 202 >gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi] Length = 250 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 30/231 (12%) Query: 43 VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102 + + + G + + +++ D ++ S++P + V + V+ Sbjct: 13 STIQNYLNRKLKSYGDLKY--AYLIMNKKKPTDVVIISNYPSEWVEIYRSNNYQHIDPVI 70 Query: 103 QRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 P F + N++ + N Y + D L +F Sbjct: 71 LTAINKISP-FSWDDDLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFE 129 Query: 150 KGRI-----ILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLT 195 + R I+++ ++ +L + Y+ + + + RE E L Sbjct: 130 ENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNIFSQRENEILY 189 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W S GKT EIA+ILGI+ +TV +I ++++K AI V N++ Sbjct: 190 WASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 240 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCRGLI 239 >gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 213 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + Q P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQTL--SQAGQLPPTIILTTFDDDQLVLAGLKAGARGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIQTVASGGSLVQPAVTQR--LLSGLEH--MRNDFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 211 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV++ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 206 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 47/81 (58%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AY+ F DV ++ LT E+ L I++ KT++ I+ L ISR TV +++++I+ Sbjct: 124 GAYEGFAFFPNDVDEEENISLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTII 183 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 +K +R GA+ A++ I+ Sbjct: 184 KKLRVDSRVGAVVKAIKEGII 204 >gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium] Length = 238 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 41/80 (51%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A + + L+ RE+ECL W+++GK++ IA IL IS +TV Y+ +R Sbjct: 158 HVVAQKIIVPSMIESRQPRLSPRELECLRWVAQGKSNTVIADILKISDDTVAFYLRGALR 217 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K TR A+A V ++ Sbjct: 218 KLGVSTRMQAVALCVTFGLI 237 >gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 6/135 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D R L V + G LL P L +G A Sbjct: 95 VYDALRAGAAGFLLKDARPAELVAAVRTVAGGEQLLAPAVTRRL------VGRFAERIRE 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT REVE L I+ G ++ EIA L IS TV Y++ I+ K + Sbjct: 149 VAPGRGGAGAELAGLTPREVEVLGLIARGLSNAEIAAELVISHETVKTYVSRILAKLGLR 208 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A R +V Sbjct: 209 DRVQAVVLAYRTGLV 223 >gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] Length = 227 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWI 197 G+M + + + D + + +A K G + +LT RE+E L + Sbjct: 120 GVMFVSSLAKGVDGDFIRSLAAIADGGNYYPKEVKAVAGYEAFEVLPDLTDREMEVLKVL 179 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S G ++ EI+ L IS TV +++++I+ K K R+ A+ A+R I Sbjct: 180 SSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAGI 227 >gi|240170339|ref|ZP_04748998.1| transcriptional regulator, LuxR family protein [Mycobacterium kansasii ATCC 12478] Length = 528 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 R + L + A A D + LT REVE L ++ G ++ EIA L Sbjct: 431 RRQVQAGELDAVAAEAVLHA-AGHRADRSSLRPHGLTPREVEVLCLVARGASNKEIAAAL 489 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS T N++ K R GA YA+RN +V Sbjct: 490 VISEKTARNHVERTYAKIGVTNRIGASMYALRNGLV 525 >gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] Length = 224 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 5/134 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H L + ++ + + G L PK + R+ + E L+ + Sbjct: 90 VTHALKTGALGYMLKEMDADAIIQAIKVVAKGGSYLHPK---VTRNLVMEFRRLSERENK 146 Query: 172 -MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 F ++ LT RE E L +++G+++ I L IS TV N+++SI++K Sbjct: 147 GSFHQTEIRRPYHL-LTKRESEVLQLLTDGQSNRVIGETLFISEKTVKNHVSSILQKMQV 205 Query: 231 KTRSGAIAYAVRNN 244 R+ A+ A++N Sbjct: 206 NDRTQAVVTAIKNG 219 >gi|328882240|emb|CCA55479.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 3/147 (2%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR 136 Query: 161 EIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+A + A+ D + LT RE E L I+ G ++ EIA L ++ TV Sbjct: 137 R--LIADFAASRPAPRKDTTALRLNGLTPRETEVLELIARGLSNQEIADHLVLAEQTVKT 194 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I ++ K + R+ A+ +A + +V Sbjct: 195 HIGRVLAKLDLRDRAQAVVFAYESGLV 221 >gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIRTVAGGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|182438916|ref|YP_001826635.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779572|ref|ZP_08238837.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467432|dbj|BAG21952.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659905|gb|EGE44751.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 229 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 10/176 (5%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRY 130 P ++ + + E D + RP L F + + Sbjct: 47 QHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGF 106 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 A + + ++ ++ + A Q + + LT RE Sbjct: 107 LLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPSGATRGGQALRRHGLTPRE 166 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ G ++ EIA L ++ TV +I ++ K + R+ A+ +A + +V Sbjct: 167 SEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 222 >gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 233 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 6/144 (4%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR--IILRDRLWEIGL 164 E F VF + P G+ R + + P+ + R + ++ + Sbjct: 89 ERFRAVFFAAEDFGITPQGLTV--PVRGPYGDRGLLSVTRRCPRSDWDKLKRAAIGDLQV 146 Query: 165 LAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + + DV + L+ RE+E L W++ GK+ +I ILGIS TV ++ Sbjct: 147 AAVHLHDAVMRSDVISRALRQPRLSTREIEVLQWVAAGKSQMDIGDILGISHRTVEVHLR 206 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S K T + A+ A+ +V Sbjct: 207 SAREKLGTLSTVQAVGRAIGLGLV 230 >gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 557 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%) Query: 95 KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154 + Y +V QR + T+P+ G + F V G+M + K Sbjct: 393 TEYYEDVCQRYFFTEEKLLETIPKLCETKFGTVME---IPFSVHEHMHGVMAVHMKHLEA 449 Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGREVECLTWISEGKTSDEI 206 ++ + L + K + H K LT RE++ L + +G ++ EI Sbjct: 450 AKEAEVYVTALIGIGTMIMKQNNYHGPKQQLNMDMLSERLTSREMDVLNLLVQGCSNREI 509 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 A L IS +TV N+I +I +K RS IA + N Sbjct: 510 ADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547 >gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A] Length = 241 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%) Query: 59 SHFLLVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 SH+L R Q +++D ++ S++PF + + R +LF Sbjct: 62 SHYL--RH---QYERIDPVIEWARCSEYPFQW------GPDFGHAGISTRQQQLFDEAAE 110 Query: 115 TLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 +D R ++TF R+ + + K L EI + + Sbjct: 111 FGICCGLTIPLVDRRGGVAAMTFAADRLDPTFLRVAEKYEQAL-----EIMAMCFHIGVR 165 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K LT RE ECL W ++GK++ EI ILGI T ++ + +K +T Sbjct: 166 RKLSCGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRT 225 Query: 233 RSGAI 237 ++ A+ Sbjct: 226 KNQAV 230 >gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei SAVP1] gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 668] gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1106a] gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 241 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 R+ + A + + LT REVE L W ++GKTS EI+ IL IS +TV Sbjct: 152 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 211 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N ++ + + K T ++ A+ A ++ Sbjct: 212 NFHVKNAILKLRTANKTAAVVRAAMLGLL 240 >gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 239 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 R I+ D ++ LL + + L+ RE E L W + GKT+ E A I Sbjct: 145 YKRGIIADAIYLGCLLQSDLVAGIAGGEPGP----RLSRREKEVLKWAAVGKTAWETAQI 200 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +S +TVN+++ + K ++ A+A A+R ++ Sbjct: 201 MTVSNSTVNHHLYNACAKLDVANKTHAVAKAIRAQLI 237 >gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L D L + ++ G +L I + E+G L+ A Sbjct: 93 VFRGLRAGARGYILKDTPSEELAAAIEKVHRGEAVL---DGPITLKVISELGRLSKGPAG 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 L+ RE+E L ++ G ++ EIA L I+ TV N+I+SI+RK + Sbjct: 150 PQPGSG-------GLSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGFR 202 Query: 232 TRSGAIAYAVRNNIV 246 R+ A YA+ + Sbjct: 203 DRTQAALYALERGWI 217 >gi|331699942|ref|YP_004336181.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954631|gb|AEA28328.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 221 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 11/221 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D AL + A + V + + ++ P ++ + + Sbjct: 1 MIRVLVVDDQAMVREGFAALLD---AQPDMEVVGTAGDGRAALPVAATRHPDVVLMDIRM 57 Query: 93 SEKDKYYN---VLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 E D +L +P V T L + I L A + + + Sbjct: 58 PEMDGLEAARLLLAQPDPPKVVVLTTFDLDDYIFDALAAGASGFLLKHAPATDLLHAVRV 117 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 G +L + L+A + A + + LT RE E L ++ G ++ E Sbjct: 118 VAAGEALLAPEVTRR-LIAHFVAARPDPAAAGPRPDRLAPLTDRETEVLGLVARGLSNTE 176 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L ++ TV +++ I K + R+ A+ A +V Sbjct: 177 IADALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYECGLV 217 >gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 242 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 6/180 (3%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ +V D + + ++ K R + V+ + Y Sbjct: 47 ERLSPDVVLVDINLPGLNGLEVARVIKRREP--RVGLIVISVYEDDEQLFQAIKVGAAAY 104 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFEL 186 S + + + +I + + + + + L Sbjct: 105 SSKDVHPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPL 164 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ YA++ + Sbjct: 165 TSREIEILDCIARGLSNKEIATQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170 VF + D + L + R+ G +LL + I++D + L A Sbjct: 90 VFEAVKAGARGYLLKDAQAEELIDAIRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPA 149 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT REV+ L +++G T+ EIA LG+S TV N ++ I K Sbjct: 150 -------------AELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHL 196 Query: 231 KTRSGAIAYAVRNNI 245 R+ A YA+R + Sbjct: 197 NNRTQAALYAIREGL 211 >gi|303263546|ref|ZP_07349469.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|302647319|gb|EFL77543.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] Length = 211 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 252 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ ++ L L F + + + + L + Sbjct: 94 GVAATERLTAELPGCRVLALSTFDMDEHVVRALRAGASGFLPKDVSPEELTAALRTVSAG 153 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ L L+ + A + +V LT RE E L I+ G + IA L Sbjct: 154 DAVVAPRLLTR--LIGTFVAPQRTTEEVRLD---GLTPRETEVLRLIATGLDNTGIAEEL 208 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GI TV N+I S+ K + R+ A+ A + +V Sbjct: 209 GIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 244 >gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 224 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 6/166 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV---FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR ++ D +++ V F + + A + Sbjct: 55 VRMPGVNGIDATARIVETHPATRVLVLTTFDLDEYAFAALRAGASGFLLKDAAPADLAAA 114 Query: 144 LMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + ++ R+ E+ A + D + LT REVE L ++EG Sbjct: 115 VRTVAGGEAVVSARVTRRMLELFAEHLPAAGADRGRDAPHPRLAGLTPREVEVLREVAEG 174 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R A+ A +V Sbjct: 175 LSNGEIADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETGLV 220 >gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 211 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 63/172 (36%), Gaps = 11/172 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR-- 141 + + E + +L P L E I C + Sbjct: 36 AEAKNGVEAVEMHALHQPDITLMDLRMPQMEGL-EAINRIREATPAACIIILTTYDTDED 94 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--------HWGKDFELTGREVEC 193 I L +L+D E A Q + K Y ++ +LT RE+E Sbjct: 95 IYRGLQAGARGYLLKDTTAEDLATAVRQVHHGKRYIPIEVGIRLTERIQESDLTDRELEV 154 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++EGK++ EIA L IS TV +I +I+ K R+ A+ A+R I Sbjct: 155 LGELTEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITALRRGI 206 >gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 333 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LTGRE E L W+++GKT+ +I ILG S TV+ ++ + K +TR+ A A A+ Sbjct: 268 FRLTGREAEVLHWVAQGKTNRDIGDILGTSPRTVHKHLEHVFAKLGVETRTSAAAMAL 325 >gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp. 8437] Length = 216 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 42/68 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE++ L + +G ++ EIA L IS TV ++++I++K K+RS AI Sbjct: 146 RGSNEDSLTPRELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAII 205 Query: 239 YAVRNNIV 246 YA+++ +V Sbjct: 206 YAIQHELV 213 >gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------GLLAAYQANMFKSYDVHWGK 182 S A+ G++ G + + + +L ++ Sbjct: 115 ISQPCWAAQGVFGMLSFLRSGPALSSGEISMLRRQLQTVANMLHLAMYEHLDVPTMNCVS 174 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 175 EVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234 Query: 243 NNIV 246 ++ Sbjct: 235 FGLL 238 >gi|239816122|ref|YP_002945032.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802699|gb|ACS19766.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 302 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 40/82 (48%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R + L E LL A Q + LT RE E L+W+++GKT+ +I ILG Sbjct: 209 RNLGAAALGETMLLFAAQREGAAGKPSARLAEAALTPRETEVLSWLAKGKTNRDIGEILG 268 Query: 212 ISRNTVNNYIASIMRKTATKTR 233 S TVN ++ I K +TR Sbjct: 269 TSPRTVNKHLEHIFEKLGVETR 290 >gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 240 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSR---CLTLRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ A+ A+ ++ Sbjct: 200 SIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|322391513|ref|ZP_08064982.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145596|gb|EFX40988.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 210 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEVNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGARGYMLKTAS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I ++ + + H +LT RE + L Sbjct: 107 ADELLHAVRKVAAGEFAIEQE-----------VSKKVEYNRNHVELHEDLTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205 >gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 209 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147 + + +LQ + V T + G+ Y + + G+ + Sbjct: 64 EMGGVEATQAILQECPNAYIIVLTTYDGDEDIYRGLQAGARGYLLKSVSREELIDGIKQV 123 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + + I + + A A S +LT RE + L + EGK++ EIA Sbjct: 124 YAGRKYIPAE-------VGARLAERMSSP--------QLTERERQVLMLMCEGKSNQEIA 168 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + L IS T+ ++ I+RK R+ A+ A++ Sbjct: 169 LTLQISEGTIKFHVNGILRKLDVCDRTQAVLVALKRG 205 >gi|29828772|ref|NP_823406.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605877|dbj|BAC69941.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 2/128 (1%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDV 178 + ++ +A G ++ + + L R IG AA Sbjct: 92 GLALSAADDIGAVRNALAGGVKGYVVTGTRTNLGLPTRPGAAPIGSAAARMHRRPPGAPS 151 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211 Query: 239 YAVRNNIV 246 A+R I+ Sbjct: 212 VALRTGII 219 >gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 85/224 (37%), Gaps = 6/224 (2%) Query: 23 VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82 H P R ++ + S + E VG + DL + D +V D Sbjct: 9 GPHGPIRVAVVDDQPLIRAGFSMVLAAAEDIEVVGEAENGAEALDLLDRVEAD-VVIMDI 67 Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 ++ + +E+ ++P + E+ L A + Sbjct: 68 RMPVMDGIRATEELMR---REKPPGVLVLTTFDNDEDAFAALRAGAGGFLLKNAPAAEVV 124 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G + + G ++ R+ LL A+ + + LT RE + L+ ++ G + Sbjct: 125 GAIRVVAAGESVVAPRITR--LLLDQVADRLAPANGQSERLNVLTARERDVLSQVARGLS 182 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + E+A L ++ TV ++ ++M K + R+ A+A+A + +V Sbjct: 183 NAEVAAELYVAEATVKTHLGNLMAKLHLRDRAQAVAFAYESGLV 226 >gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 203 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 46/92 (50%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +R+ + + A ++ + +LT RE E L + GKT+ +IA +L IS Sbjct: 111 IRNAMHGRATIDAQLLHVLTHQTDKAAQRPDLTNREREVLRLLVAGKTNHQIADLLKISP 170 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++SI+ K R+ A AV++ ++ Sbjct: 171 ATVRIHVSSILAKLGVNNRTEAAIIAVQHKLI 202 >gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 253 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 31/195 (15%) Query: 62 LLVRWDLFQEQKLD--SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119 +LV +L LD V +P V +++ E D+ F+ L Sbjct: 60 MLVDLNLPGMSGLDLTRQVRRQYPSIGVVMLSMHESDEQA-------------FNALRAG 106 Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 D + + + ++ +G ++ D + E +A + F++ Sbjct: 107 AAAYRSKDVK--------PQALVDILRRVTRGEYVINDVVLEEPQVAKRVLSQFRNLPEA 158 Query: 180 WGKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D L+ RE+E L I+ G ++ EIA L IS TV N+I+SI+RK + Sbjct: 159 TATDPAADFPIFTPLSEREIEVLERIAAGGSNKEIADSLSISTQTVKNHISSILRKLSLN 218 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ +A+R + Sbjct: 219 DRTQAVLFALRRGWI 233 >gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 73 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 40/67 (59%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + ELT RE E L + +G ++ EIA +L IS TV +I I +K K+RS A+ Y Sbjct: 4 ESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIY 63 Query: 240 AVRNNIV 246 AVRN +V Sbjct: 64 AVRNQLV 70 >gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] Length = 240 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEI 206 +L+DR E LA + K +H LT RE+ECL W+S G + E+ Sbjct: 141 SEHVDQVLQDREAEFHFLANFLHLRMKDVALHAHSSAPVLTRRELECLKWLSAGLRTAEL 200 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV +I + K + KTR A+A AV ++ Sbjct: 201 ADKLAISGPTVEFHIKNAREKLSAKTREQAVARAVSLKLL 240 >gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] Length = 265 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 12/220 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPF---DLVRCMALSE 94 LD ++ +T A R +L + + + S+ PF D+V Sbjct: 44 LDGRAETSVGGRIITTVAPAWQETYARENLAAHDPCVRRVAESNSPFFWSDIVLPEDDRR 103 Query: 95 KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG--- 151 D + ++ +P ++ G+ F ++ P+G Sbjct: 104 PDLTRMTMTAARDMGYYDGLVMPLHMADANGVRMLSSLSLFWADGSEDVRRVIGPRGPAV 163 Query: 152 -RIILRDRLWEIGLLAAYQANMFKSYDVH----WGKDFELTGREVECLTWISEGKTSDEI 206 +++ ++ L +A +S +G+ +LT REV+ L+W ++GKT+DE Sbjct: 164 VKMLAAAWAQKLSDLGEAEAKPVQSPAKVLTGLFGRPPKLTSREVDVLSWAAKGKTADET 223 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +VIL + R TV+ ++++ RK ++ A+A AV ++ Sbjct: 224 SVILALGRETVHTHLSNACRKLQASNKTHAVAMAVHRRLI 263 >gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115] Length = 218 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F L + L V + G L P +A Sbjct: 93 IFALLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPS--------------VARKVLE 138 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F ++ + +L+ RE+E L + G+T+ EIA L IS TV ++A+I K Sbjct: 139 RFSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 198 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ + ++ + Sbjct: 199 SRTEAVLHGIKRGWI 213 >gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri] gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 17/221 (7%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 ++ ++ D + + + + ++L K D + ++P + Sbjct: 12 EKIIDKIKTCDNNKDINQCLSEMAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKY 71 Query: 90 MALSEKDKYYNVLQRPTELFCPV---------FHTLPENITPPAGMDN--RYCSLTFDVA 138 + KY V+ P+ N+ A S A Sbjct: 72 YDDAGLLKYDPVVDYSKSHHSPINWNVFEKKSIKKESPNVIREAQESGLITGFSFPIHTA 131 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVE 192 G++ + I D L+ +L++ N K H D LT RE E Sbjct: 132 NNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLSSLVDNYQKINTTHKKSDSILTKREKE 191 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 CL W SEGK++ +I+ ILG S TV ++ + K T R Sbjct: 192 CLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 210 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 + + + T D + + + + R L + D Sbjct: 96 LASAGADGFLPKTVDPTHLLAAIRQVAAGRVVFDRAML-----------KALQEPDAEEA 144 Query: 182 KDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K +LT RE + L +++G ++ EIA L IS TV ++ I K + R+ A A Sbjct: 145 KRLAQLTPRESQILRQVTKGLSNKEIADRLQISERTVKAHLQHIFDKLGVQDRTSAAVLA 204 Query: 241 VRNN 244 +R+ Sbjct: 205 IRHG 208 >gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] Length = 267 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 17/233 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 DL+ R+ D + + + T G + ++ ++S + + + Sbjct: 20 DLIDRLARADRVEAASDIITGFTNAWGLHNVAYAALNMPSPGAARPLLSMTYSVEWQKHY 79 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYCSLTFDVARIRI 142 A S +++ P+ + + P +D ++ + Sbjct: 80 AQSGYVDIDPIVRSGLGGILPIDWSEIDRGDPIIRKFFGEAQELDVGANGMSIPIRGRHG 139 Query: 143 GLMLLFPKG-------RIILRDRLWEIGLLA-AYQANMFKSY-DVHWGKDFELTGREVEC 193 L R I RD + ++ ++A + A +S ++ D L RE C Sbjct: 140 EFALFTVTSNENALEWRAIRRDLIRDLMVVAWNFHAAALRSCGELAEPGDVHLPLREASC 199 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GKT +EI IL IS +TV ++ S + T + +A A+ ++ Sbjct: 200 LRWKALGKTDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKALALGLI 252 >gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002] gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002] Length = 232 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 24/184 (13%) Query: 83 PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTL-----PENITPPAGMDNRYCSLT 134 P ++ + + + D Y + + P PV + I + Y Sbjct: 50 PDLVISDIMMPQVDGYQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCDAYLPKP 109 Query: 135 FDVARIRIGLMLLFPKGRIILRDR-------------LWEIGLLAAYQANMFKSYDVHWG 181 F+ + + L + I + L EI Q + + Sbjct: 110 FEPEELEAIVKNLLTREAAIAEQQDGGGSNLEGIAQDLREIKQFLGQQNQLVTTPPPLK- 168 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 169 --IDLTPREQSVLDLVAQGLMNKEIAKELETSVRNVEKYVSRLFSKTGTNSRTELVRYAL 226 Query: 242 RNNI 245 ++ + Sbjct: 227 KHGL 230 >gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 215 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ L E LA+ Sbjct: 82 HADVLEAVKSGATGYLLKSASTEELIDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 138 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 139 PA---PAPGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 196 QLHNRVELVRYAIERGL 212 >gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 223 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 10/161 (6%) Query: 89 CMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + + D + + ++ + + E + N A G Sbjct: 66 DLVMPRMDGVLVTSRITSQYPDVRVVILTSFGELERIQGALANGASGYLLKSA----GPD 121 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + + RD ++ +A S G LT RE + L I+ G ++ E Sbjct: 122 EVVAAIQAAARDEMFLDPAVARRLTRQMVSPPTGVGA---LTERERDVLILIANGYSNKE 178 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS TV +++SI+RK +R+ A AVR +V Sbjct: 179 IADELVISERTVRTHVSSILRKLRLSSRTQAALVAVREGLV 219 >gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 231 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F L + L V + G L P +A Sbjct: 106 IFALLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPS--------------VARKVLE 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F ++ + +L+ RE+E L + G+T+ EIA L IS TV ++A+I K Sbjct: 152 RFSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 211 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ + ++ + Sbjct: 212 SRTEAVLHGIKRGWI 226 >gi|290963157|ref|YP_003494339.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260652683|emb|CBG75816.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 231 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V+ RP L F + + VA + + ++ ++ Sbjct: 81 VVHRPRVLMLTTFDIDDYVYEALHAGASGFLLKDAPVAELVQAVRVIAAGDALLAPSVTR 140 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+ + LT RE E L+ +++G+++ EIA L ++ TV + Sbjct: 141 R--LIEDMARRRPAPPGAARLRLNGLTPREAEVLSLVAQGQSNTEIAARLVVAEQTVKTH 198 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ K + R+ + +A + +V Sbjct: 199 MTRLLAKLGARDRAQLVVFAYESGLV 224 >gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 209 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 35/56 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I+EG+++ EIA L IS TV N++ SI+++ + R+ A A Sbjct: 148 ELTPRETEVLALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILA 203 >gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 210 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L +++GK++ EIA L I+ TV ++++I+ K R+ A+ YA + Sbjct: 146 HEQLTEREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIYAFQ 205 Query: 243 NNIV 246 N +V Sbjct: 206 NKLV 209 >gi|298249284|ref|ZP_06973088.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547288|gb|EFH81155.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 13/134 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F + D L + + G +++ P A Sbjct: 93 IFPAIRAGALSYLLKDIGLPDLADAIRKAACGEVVMHPHIA-------------ARVVQE 139 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +L+ RE E L I+EG ++ IA L +S TV +++ +I+ K Sbjct: 140 LDGASHPDMASFAQLSEREREVLRLIAEGLSNAAIADRLVLSEKTVKSHVRNILGKLHLV 199 Query: 232 TRSGAIAYAVRNNI 245 R+ A +A R + Sbjct: 200 DRTQAAIFAWRQGL 213 >gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 191 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ R + + + + A + EL+ RE+E L I+ G T+ E Sbjct: 83 LVETVRRGVQGESIMHPRVAARVVNEIRAMKQASPDPFSELSERELEVLRLIARGLTNAE 142 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 IA L IS TV ++++I+ K R+ A +A Sbjct: 143 IAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181 >gi|297194566|ref|ZP_06911964.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152332|gb|EDY66387.2| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 12/175 (6%) Query: 82 WPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYC 131 P ++ + + E D + RP L F + + Sbjct: 48 HPDVVLMDVRMPEMDGLAAARELLNPPTAVVHRPKVLMLTTFDVDDYVYEALRAGASGFL 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A + + ++ ++ L+A + A + LT RE Sbjct: 108 LKDAPPADLIAAVRIVAAGEALLAPSVTRR--LIADFAAQRPAPRRDPSLRLNGLTPRET 165 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ G ++ EIA L ++ TV +I ++ K + R+ A+ +A + +V Sbjct: 166 EVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 220 >gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 86/231 (37%), Gaps = 30/231 (12%) Query: 43 VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102 + + + G + + +++ D ++ S++P + V + V+ Sbjct: 13 STIQNYLNRKLKSYGDLKY--AYLIMNKKKPTDVVIISNYPSEWVEIYRNNNYQHIDPVI 70 Query: 103 QRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 P F + N++ + N Y + D A L +F Sbjct: 71 LTAINRISP-FSWDDDLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPANNLATLSFMFE 129 Query: 150 KGRI-----ILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLT 195 + R I+++ ++ +L + Y+ + + + RE E L Sbjct: 130 ENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNRNNSKSQEPNLFSQRENEILY 189 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W S GKT EIA+ILGI+ +TV +I ++++K AI V N++ Sbjct: 190 WASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|51894297|ref|YP_076988.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857986|dbj|BAD42144.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 221 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F L D Y L+ + + G LL P+ I L E L++ A+ Sbjct: 94 IFEGLAAGARGYLLKDAEYDELSQAIRTVAAGESLLQPQ---ITTRVLKEFSRLSSMAAS 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K+ + LT RE E L ++ G ++ +IA L I + TV +++ SI K + Sbjct: 151 RPKARPLVE----PLTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGAR 206 Query: 232 TRSGAIAYAVRNNIV 246 R AI A N+V Sbjct: 207 DRVHAILLAQELNLV 221 >gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 225 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 14/170 (8%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF---HTLPENITPPAGMDNRYCSLTFD 136 P +V + L D + E + T E I + + YC Sbjct: 64 PDLVVMDIGLPRIDGIAATQQIKAALPETHVVMLTSHKTETEIIAALSSGADAYCIKGAS 123 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + R+ + + +A + K G L+GRE+E L Sbjct: 124 IERLLNAIAAAVDGATYLDP-------QIARQVIDHLKPPSAK-GNTANLSGRELEVLKL 175 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EG ++ EIA L +S NTV ++ IM K A R A A+R+ +V Sbjct: 176 MVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSGLV 225 >gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 216 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170 VF + D + L + R+ G +LL + I++D + L A Sbjct: 90 VFEAVKAGARGYLLKDAQAEELIDAIRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPA 149 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ELT REV+ L +++G T+ EIA LG+S TV N ++ I K Sbjct: 150 -------------AELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHL 196 Query: 231 KTRSGAIAYAVRNNI 245 R+ A YA+R + Sbjct: 197 NNRTQAALYAIREGL 211 >gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 265 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 5/174 (2%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 D + D L + A+ L R E E P D + Sbjct: 88 DDHLYEIDPIPALAQRRAVPFLWSEVAELTRLAEEQAAFL----ERSMPARVGDGVAIQV 143 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-NMFKSYDVHWGKDFELTGREVE 192 R M + R + +L E L++ + + + L+ RE E Sbjct: 144 FGPNMRHGYVGMGFGDRPRDVTAPQLAEYQLVSQLMHLRACRLIEERNRSEIALSARETE 203 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W++ GK+ IA ILG+S +TV+ + I RK R+ AI A+ +V Sbjct: 204 VLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDRTAAILKAINLGLV 257 >gi|329114860|ref|ZP_08243616.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] gi|326695757|gb|EGE47442.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] Length = 299 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K LT RE E L WIS+GKT+ +IA IL IS TVN ++ K + R+ A Sbjct: 231 ASLQKRLNLTAREAEVLFWISKGKTNRDIAEILSISHRTVNKHLEQAYVKIGVENRASAT 290 Query: 238 AYAVRNNIV 246 A ++ +V Sbjct: 291 ARVLQALLV 299 >gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 188 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 9/158 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147 M + + L+ P + T + P Y D + + + Sbjct: 37 GMDGVDALRRLRELEHPARVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSV 96 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 ++ + LL+ +A G+ LT RE E L I++G+ + EIA Sbjct: 97 HAGHVLLQAE--VAGALLSQEEA------GPGTGRAGALTEREREVLGLIADGRANREIA 148 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S TV ++++I+ K R+ A +AVR+ + Sbjct: 149 RALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 186 >gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104] gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104] Length = 218 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 11/211 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + F++V ++ + + V++ P +V + + D Sbjct: 13 VDDQDLVRSGLRRILRR--KDGFVIVAECADGDE-VPAAVAAHRPDVVVMDLRMRRVDGI 69 Query: 98 --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + RP L F+ + + + + + Sbjct: 70 EATRRLGGRPPVLALTTFNEDELLSGALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLD 129 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L Y + H ELT RE + LT I +G ++ EIA L IS Sbjct: 130 PAVTSRV--LTTY---RKAAPGPHGAAIAELTTRERDVLTLIGKGLSNSEIADELCISGV 184 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++I I K + R+ AI YA N IV Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215 >gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 8/181 (4%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ + IV D + + ++ K R + V+ + + Sbjct: 49 ERLMPDIVLVDINLPGLNGLEVARVIKRREP--RTGIIVLSVYEDDDQLFQAIKVGAAAF 106 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FE 185 S + + + +I L + AA + F+ +D Sbjct: 107 TSKDISPDELVQMIREVARGRYLINDAVLARPNV-AARVLHQFRELAATEEEDSASLFAP 165 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I+ G ++ EIA L IS TV N+I SI+ K R+ A+ A++ Sbjct: 166 LTSREIEILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKGW 225 Query: 246 V 246 + Sbjct: 226 I 226 >gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] Length = 209 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150 + + + + + + E+ +D + Y T + I + F Sbjct: 63 GVEATTQIKKDLPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTFNG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L ++ + M K +++ LT RE+E L I++G ++ EIA Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 213 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 82/207 (39%), Gaps = 20/207 (9%) Query: 47 MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQ 103 + + +Y+ + + +E ++++ P +V + + E D Y V Q Sbjct: 18 NLLLLVKDYLEYQGYQVTTAGNGREALD--LLTTTVPDMIVCDIMMPEMDGYAFIEQVRQ 75 Query: 104 RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 P + PV + + + Y + F+ + + + +L+ Sbjct: 76 NPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQ-- 133 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + + V +D ELT E + + +++G + EIA L +S+ TV Sbjct: 134 --------HNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVSQRTVE 185 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245 +++++++ KT R+ +A++ +I Sbjct: 186 SHVSNMLNKTGLHNRTELARWAIQKSI 212 >gi|302545751|ref|ZP_07298093.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302463369|gb|EFL26462.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 1/146 (0%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + A Q + + + LT RE E L I+ G ++ EIA L ++ TV + Sbjct: 137 RLIAEFARQRPAPRR-NSSLLRRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTH 195 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 I ++ K + R+ A+ +A + +V Sbjct: 196 IGRVLAKLGLRDRAQAVIFAYESGLV 221 >gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRI-GLMLLFP 149 L + R E+ V T ++ + + LT D R I + Sbjct: 64 LDGVAATREIRNRHPEVAVLVLTTYSDDDSIRDALGAGAQGYLTKDAGRAEIHAALRAAV 123 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 G+ + + A + S LT RE E L I G ++ EIA Sbjct: 124 TGQATFTTAVSRRLVTALTEQRPRPSEPTPDPSATTLTAREREILGLIGAGLSNAEIAAR 183 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ +TV +I + K + R+GA+ YA + +V Sbjct: 184 LFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQTGLV 220 >gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + D LT RE+E L ++ G+T+ ++ L +S TV ++ I K TR Sbjct: 133 RLMDRMRAPQESLTPREIEVLALLATGRTNRQVGERLFVSETTVKTHVNHIFTKLGVDTR 192 Query: 234 SGAIAYAVRNNIV 246 + A++ A++ ++ Sbjct: 193 AAAVSRAMKEGLI 205 >gi|156741214|ref|YP_001431343.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232542|gb|ABU57325.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 204 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 15/173 (8%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +D I+++D L+E+ +Y +L V LP D L Sbjct: 45 IDVILAADESVLADADQVLAEEPRYAALLLSDDPRQADVLRGLPLTAWGILTHDVGAAEL 104 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 + + GL++L P L RL + + V LT RE + Sbjct: 105 AAALHAVAQGLIVLAPN----LAARLLQA-----------RQSPVEEPTGEPLTARERDV 149 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S+G ++ +IA L IS +TV +++S+ K +R+ A+ R I+ Sbjct: 150 LELVSQGLSNKQIAQKLHISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202 >gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28] gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90] Length = 171 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 48 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 107 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 167 Query: 243 NNIV 246 ++ Sbjct: 168 FGLL 171 >gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 84/216 (38%), Gaps = 22/216 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 ++++Y+ + ++ D + SI+ + +V + + + Y V Q Sbjct: 17 SISDYLELCGYSVLTAD--DGENALSIIQQEHLDLMVTDIIMPRMNGYELVRRVRQNIEF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV E I + Y F++ + + L + +II + Sbjct: 75 RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELSAAVRNLLERSQIIQSEYCLSS 134 Query: 163 GLLAAY--------QANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVIL 210 + + + + D ++ RE E L ++ G ++ EI L Sbjct: 135 QISGGFPPDDKTRPVSPSIPRTETLNHPDSHILMSISTREREVLELLTHGLSNAEIGSKL 194 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV Y++S++RKT++ R+ + +A+++ IV Sbjct: 195 YLSPRTVEKYVSSLLRKTSSNNRAELVRFAIKHGIV 230 >gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] Length = 259 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK------GRIILRDRLWEI 162 CP L + G+ N + +++ + G + + + + R R + Sbjct: 109 ICPAVAELLHDAEK-HGLGNLFIAVSACNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLL 167 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L + D + LT REV+CL W + GKT EIA IL I+R TV Y+ Sbjct: 168 SLAGIIHGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQ 226 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K R+ A+A A+ I+ Sbjct: 227 NAKIKLNCSNRTSAVATALSLGII 250 >gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM 4136] Length = 210 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E + RE E L +++G+++ EIA +LG+S TV ++++++ K + R+ A+ A+R Sbjct: 147 EPSPREREVLAQMAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRG 206 Query: 245 IV 246 ++ Sbjct: 207 LL 208 >gi|256390165|ref|YP_003111729.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356391|gb|ACU69888.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170 V+ L + D R L V + G LL P R ++ D + + A Sbjct: 86 VYDALYAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVTRRLIAD------VTSRRPA 139 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + LT RE E L ++ G ++ EIA L +S +TV ++++I+ K Sbjct: 140 RAGDPGAAPSARLDALTPRERETLLLMARGASNAEIAARLFVSEHTVKTHVSNILMKLGL 199 Query: 231 KTRSGAIAYAVRNNIV 246 + R A+ +A + +V Sbjct: 200 RDRVHAVIFAYDSGLV 215 >gi|295835904|ref|ZP_06822837.1| two-component system response regulator [Streptomyces sp. SPB74] gi|333023773|ref|ZP_08451837.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|295825771|gb|EFG64471.1| two-component system response regulator [Streptomyces sp. SPB74] gi|332743625|gb|EGJ74066.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179 + ++ +A G ++ + + L R L A+ H Sbjct: 92 GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPGRPGAAQLGAASRTHRRPPGTPSH 151 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 211 Query: 240 AVRNNIV 246 A+R I+ Sbjct: 212 ALRTGII 218 >gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Alistipes shahii WAL 8301] Length = 212 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 9/163 (5%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 F + ++ + +F + D+ + Sbjct: 57 FAMPGLDGAQTTERALAQRPDLKIITLSMFGEESYYSRMVEAGARGFLLKDSDIGDVIEA 116 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + G LL++ M D D +L+ RE E L + G ++ Sbjct: 117 VETVAAGGSYFSP------QLLSSLTGRMRTREDAA---DEQLSSREREILVAVCRGLSN 167 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS+ TV+ + A+I+ KT K + + YA+RN IV Sbjct: 168 QEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 210 >gi|256785092|ref|ZP_05523523.1| two-component system response regulator [Streptomyces lividans TK24] gi|289768986|ref|ZP_06528364.1| two-component system response regulator [Streptomyces lividans TK24] gi|289699185|gb|EFD66614.1| two-component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R + R +A+ + ++ + L+ RE E L ++ G ++ EI Sbjct: 126 LFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEP--LSAREREVLALVARGTSNKEI 183 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ + K R+ A+A A I+ Sbjct: 184 ARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223 >gi|21223813|ref|NP_629592.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7105984|emb|CAB76009.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 224 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R + R +A+ + ++ + L+ RE E L ++ G ++ EI Sbjct: 126 LFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEP--LSAREREVLALVARGTSNKEI 183 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ + K R+ A+A A I+ Sbjct: 184 ARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223 >gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 212 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 16/176 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 + S P ++ + + E D +L ++ V T + ++ Sbjct: 46 ELARSLRPDLVLMDLRMPEMDGVAATERILAELSQTRVLVLTTYDSDADILRAVEAGASG 105 Query: 133 LTFDVARIRIGLMLLFPKGRII--LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L+ P+ + +R + L A+ V + L+GRE Sbjct: 106 ----------YLLKDAPREELFAAIRAAMAGESPLDPAVASRLMRR-VRTPPENALSGRE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E L +++G ++ EIA L IS TV ++ I K R+ A+ A++ I+ Sbjct: 155 IEVLDLVAQGASNREIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGII 210 >gi|258541258|ref|YP_003186691.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632336|dbj|BAH98311.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01] gi|256635393|dbj|BAI01362.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-03] gi|256638448|dbj|BAI04410.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-07] gi|256641502|dbj|BAI07457.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-22] gi|256644557|dbj|BAI10505.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-26] gi|256647612|dbj|BAI13553.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-32] gi|256650665|dbj|BAI16599.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653656|dbj|BAI19583.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-12] Length = 299 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT RE E L WI++GKT+ +IA IL IS TVN ++ K + R+ A A + Sbjct: 235 KRLNLTAREAEVLFWIAKGKTNRDIAEILSISHRTVNKHLEQSYIKIGVENRAAATARVL 294 Query: 242 R 242 + Sbjct: 295 Q 295 >gi|298244698|ref|ZP_06968504.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552179|gb|EFH86044.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F T+ + LT + + G ++L P +AA Sbjct: 93 IFPTIRAGALSYLLKEAALSELTEAIRKAARGEVVLHPH--------------VAARVLQ 138 Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + K + L+ RE E L WI++G ++ +IA L IS TV +++ +I+ K Sbjct: 139 ELRGTNKDASKLYATLSEREREVLNWIAQGLSNGQIAARLVISERTVKSHVNNILGKLQV 198 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A Y R +V Sbjct: 199 SDRTQAAIYVWREGMV 214 >gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 226 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 15/185 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 + +R + V ++ P V + + D+Y F L + Sbjct: 53 MDIRMPGVDGIEATRRVVAEHPAVRVLVLTTFDVDEYA-------------FAALRAGAS 99 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 R L + I G ++ P+ + D L+ L A+ + +V Sbjct: 100 GFLLKSARPEELADAIRTIASGSSVVAPRVVRRMLD-LFAPHLPGGDDASPARPDEVAPV 158 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE + L ++EG ++ EIA L +S TV ++ +++ K + R A+ A Sbjct: 159 LR-DLTPRETDVLRAVAEGLSNAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAY 217 Query: 242 RNNIV 246 + +V Sbjct: 218 ESGLV 222 >gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2] gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1] gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1] gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2] Length = 258 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 30/197 (15%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132 D V P V + V + P + I D C Sbjct: 58 DLTVLMTLPATWVARYSSKNYFAVDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113 Query: 133 --LTFDVARIRIGLMLLFPKGR---------------------IILRDRLWEIGLLAAYQ 169 L D + +G + + R + R R + L Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVDEDRTQFLARMRPRLLSLAGIIH 173 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + D + LT REV+CL W + GKT EIA IL I+R TV Y+ + K Sbjct: 174 GTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLN 232 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A+A A+ I+ Sbjct: 233 CSNRTSAVATALSLGII 249 >gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 211 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 32/177 (18%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFC-------------PVFHTLPENITPPAGMDNR 129 P ++ + + E D V Q E+ + H + T D Sbjct: 50 PDVVLMDLRMPEMDGAAAVAQIRAEMPDVHVLVLTTYDSDEDILHAVEAGATGYLLKDTT 109 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 L + G LL P L RL + + LT R Sbjct: 110 REDLFRAIRAAAAGQPLLAPSVAARLMARLNQP-------------------RQEPLTPR 150 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E++ L +++G ++ EIA L IS+ TV +++ I K R+ A+ A+ I+ Sbjct: 151 EIDVLRLVAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGII 207 >gi|254414589|ref|ZP_05028354.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] gi|196178437|gb|EDX73436.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] Length = 217 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 A + YC + + + L + + EI Q Sbjct: 92 LIAAGASGYCLKGIEAEVLILALRSVAAGASWWDKTSTNEIRAAVGEQTPEVAQSTEESS 151 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E L I+ GK++ EI +L I+ TV ++ +I++K + R+ A A+ Sbjct: 152 AN-PLTQREQEILALIAAGKSNQEIGELLHIATGTVRVHVHAILQKLDVRDRTQAAVLAI 210 Query: 242 RNNIV 246 + +V Sbjct: 211 QKGLV 215 >gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi] Length = 250 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 28/230 (12%) Query: 43 VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102 + + + G + + +++ D ++ S++P + V + V+ Sbjct: 13 STIQNYLNRKLKSYGDLKY--AYLIMNKKKPTDVVIISNYPSEWVEIYRSNNYQHIDPVI 70 Query: 103 QRPTELFCPVF------------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 P + N++ + N Y + D L +F + Sbjct: 71 LTAINKISPFSWDDNLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFEE 130 Query: 151 GRIILRDRLWEI--------------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 R + + L + Y+ + + + RE E L W Sbjct: 131 NRSGELEEIVHNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNLFSQRENEILYW 190 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S GKT EIA+ILGI+ +TV +I ++++K AI V N++ Sbjct: 191 ASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|159897838|ref|YP_001544085.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890877|gb|ABX03957.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 206 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 + L+ P+ + RL G L A+ ELT RE E L + Sbjct: 98 AQGYLLKGAPRDELFAAIRLIHAGGSTLHPLIASKLLRQVQRDTTLVELTPREHEVLQHL 157 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + +IA L I+ TV ++ SI +K R+ A+A A ++ Sbjct: 158 AQGFANKQIAYQLNITERTVKFHLNSIFQKLGAHNRTEAVAIAYERQLI 206 >gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 226 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 13/181 (7%) Query: 72 QKLDSIVSSDWPFDLVR-CMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAG 125 LD + S P DLV + + D L + P+ + Sbjct: 50 AALDFV--SRHPVDLVMMDLQMPGMDGIEATRRIKALCPAIRVIMVTVQAKPDALMDALR 107 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 L R IG + +G L L + A+ + Sbjct: 108 AGVAGYLLKDASRREIIGAVRQVLRGDAFLNPDL--VMQTLRRLASATPDDEPPVE---P 162 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + +GKT+ EIA L IS TV ++ I+ K R+ A A+ + Sbjct: 163 LTAREQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGL 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|333026466|ref|ZP_08454530.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332746318|gb|EGJ76759.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 212 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 3/146 (2%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 65 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTR 124 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L A A + + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 125 R---LIADFARQRPAPGKPALRLKALTERETEVLTLVARGRSNAEIAESLVLAEQTVKTH 181 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 182 VSRVLTKLGLRDRAQAVVFAYESGLV 207 >gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 209 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++GK++ EIA L +S TV ++++++ K + R+ A+ +A N + Sbjct: 149 LTPRELEVLLTVADGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208 >gi|269128421|ref|YP_003301791.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313379|gb|ACY99753.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 210 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 5/153 (3%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 E + + R L V + I G Y + T + + + +G Sbjct: 63 EVLRRLHGKVRSRFLALSVSDAAEDVIGVVRGGARGYVTKTISGPELTDAIGRVA-EGDA 121 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + RL +L A+ A D +LT RE E L I+ G EIA L IS Sbjct: 122 VFSPRLAGF-VLDAFAATAAPPIDPELD---QLTQREREVLRLIARGYAYKEIAKELFIS 177 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++S++RK R +A +V Sbjct: 178 VKTVETHVSSVLRKLQLSNRHELSRWAAARRLV 210 >gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 227 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 6/191 (3%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHT 115 + VRW Q+ + S ++ + + D + + F Sbjct: 27 ITVRWQAADGQEACELAESQPVDIILMDVQMPRMDGIEATRQVVSGDSGARVIVLTTFDN 86 Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + + + D + + + +I + + + Sbjct: 87 DNYVLGAVEAGASGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRR 146 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V LT RE+E L I+ G ++ EIA L IS TV ++ ++ KT ++ R Sbjct: 147 EPVELDLPDPLTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVH 206 Query: 236 AIAYAVRNNIV 246 A+ +A ++++V Sbjct: 207 AVLFAFKHHLV 217 >gi|146320266|ref|YP_001199977.1| response regulator [Streptococcus suis 98HAH33] gi|223933224|ref|ZP_03625215.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|253751279|ref|YP_003024420.1| response regulator protein [Streptococcus suis SC84] gi|253753180|ref|YP_003026320.1| response regulator protein [Streptococcus suis P1/7] gi|253755003|ref|YP_003028143.1| response regulator protein [Streptococcus suis BM407] gi|330832254|ref|YP_004401079.1| response regulator [Streptococcus suis ST3] gi|145691072|gb|ABP91577.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus suis 98HAH33] gi|223898154|gb|EEF64524.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|251815568|emb|CAZ51151.1| response regulator protein [Streptococcus suis SC84] gi|251817467|emb|CAZ55208.1| response regulator protein [Streptococcus suis BM407] gi|251819425|emb|CAR44899.1| response regulator protein [Streptococcus suis P1/7] gi|292557848|gb|ADE30849.1| regulatory protein, LuxR: Response regulator receiver [Streptococcus suis GZ1] gi|319757560|gb|ADV69502.1| response regulator [Streptococcus suis JS14] gi|329306477|gb|AEB80893.1| response regulator [Streptococcus suis ST3] Length = 213 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R ++ I+ R +G + + + H +LT RE E LT + Sbjct: 100 ARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLL 159 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + IA IS TV ++++I+ K A R+ A+ YA ++ +V Sbjct: 160 AKGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLV 208 >gi|318061060|ref|ZP_07979781.1| two-component response regulator [Streptomyces sp. SA3_actG] Length = 198 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179 + ++ +A G ++ + + L R L A+ H Sbjct: 71 GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPGRPGAAQLGAASRTHRRPPGTPSH 130 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 131 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 190 Query: 240 AVRNNIV 246 A+R I+ Sbjct: 191 ALRTGII 197 >gi|119896947|ref|YP_932160.1| LuxR family transcriptional regulator [Azoarcus sp. BH72] gi|119669360|emb|CAL93273.1| putative transcriptional regulator, LuxR family [Azoarcus sp. BH72] Length = 318 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 3/140 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 +L F + TPP ++ + R + +++ R +L G Sbjct: 169 ARQLIRNWFDIGADETTPPRLIEWILAAELARRERREVAPLVMADGARRLLASFHDHTGE 228 Query: 165 ---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 L + S F LT RE E L W++ GKT+ +I ILG S TV+ ++ Sbjct: 229 EEWLVVLREENDASAIEALIAAFRLTTREAEVLYWVTRGKTNRDIGDILGSSPRTVHKHL 288 Query: 222 ASIMRKTATKTRSGAIAYAV 241 + K +TR+ A + A+ Sbjct: 289 EHVFEKLGVETRTAAASMAL 308 >gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 210 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 9/168 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P ++ + + D +R E + V ++P++ + R +L++ + Sbjct: 48 PDVILMDLIMPRVDG-IEGTKRCLEAHPGVRVIVLTSMPDDELVVPAI--RAGALSYVLK 104 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 I + + + + L + A + E+T RE+E L I+ Sbjct: 105 DIAADELAETIRKAVSGQPTLHPVA--AQRMMQELTAPPKASAGVEEITPRELEVLKLIA 162 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G ++ EI L I TV +++ ++ K + R+ YA++N +V Sbjct: 163 QGLSNKEIGERLFIGERTVKTHVSHLLEKLQLQDRTQLAIYALQNKLV 210 >gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 9/167 (5%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTFDVAR 139 VR + + ++ L V F + + + A Sbjct: 56 VRMPGMDGIEATRQIVSWARPLGHRVRVLALTTFDLDEYAVEVLRAGASGFLLKDAPPAE 115 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + + ++ I L LL + + + + LT RE E L ++ Sbjct: 116 LVSAVEVVADGAAAISPAVLNR--LLDRFAPLLPSASPATEPAEDTLTAREHEVLRLLAR 173 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G ++ EIA L + TV +++ SI+ K + R A+ YA + +V Sbjct: 174 GWSNAEIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHGLV 220 >gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 461 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E L ++ G +++EIA L IS NTV +I +I K +R+ A Sbjct: 1 MSDQSPLSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLE 60 Query: 240 AVRNNIV 246 AVR ++ Sbjct: 61 AVRRGLI 67 >gi|183601417|ref|ZP_02962787.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191083|ref|YP_002968477.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196489|ref|YP_002970044.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219023|gb|EDT89664.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249475|gb|ACS46415.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251043|gb|ACS47982.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794072|gb|ADG33607.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 226 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 2/137 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E G+ Sbjct: 90 VMSAINAGASGFLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGR 149 Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + LT RE E L I+ G ++ EIA L IS TV ++A I++K Sbjct: 150 QQSEVAAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKIN 209 Query: 230 TKTRSGAIAYAVRNNIV 246 + R A+ +A N++V Sbjct: 210 ARDRVQAVVFAYENHLV 226 >gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 17/221 (7%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 ++ ++ D + + + + ++L + D + ++P + Sbjct: 12 EKIINKIKTCDNNKDINQCLSEMAKIIHCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKY 71 Query: 90 MALSEKDKYYNVLQRPTELFCP----VFHTLP-ENITPPAGMDNRY------CSLTFDVA 138 + +Y V+ P VF + +P + + S A Sbjct: 72 YDEAGLLEYDPVVNYSKSHHSPINWNVFEKKSIKKESPNVIKEAQASGLITGFSFPIHTA 131 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVE 192 G++ + I D L+ +L + + K H D LT RE E Sbjct: 132 NNGFGMLSFAHSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTTHKKSDSILTKRETE 191 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 CL W SEGK++ +I+ ILG S TV ++ + K T R Sbjct: 192 CLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 17/215 (7%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 +D + + L A H L+V D +V P + + L + Sbjct: 11 IDDHTIFRSGLRELL----AEHGLVVEGDAPTVAAGVQLVERCAPDVAIVDLDLPDGSG- 65 Query: 99 YNVLQRPTE-------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 + ++R E L V + Y + I G+ + Sbjct: 66 IDAIRRIAECAPGTAVLVLTVSEADDDLTDAVLAGGCGYLLKDAPIETIVAGVTAVAAGD 125 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 ++ +LA +A+ ++ +L+ RE E L ++ G + IA L Sbjct: 126 AVLSP--RVAATMLARMRASGRQT---AARARAQLSPREQEVLRLVAGGMDNAAIAQELF 180 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS +TV N+I+SI+ K R A AVR+ I+ Sbjct: 181 ISPHTVKNHISSILTKLHVANRIQAAVRAVRDEIL 215 >gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 557 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 11/158 (6%) Query: 95 KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154 + Y +V QR + T+P+ G ++F V G+M + K Sbjct: 393 TEYYEDVCQRYFFTEEKLLETIPKLCETKFGTVME---ISFSVHEHMHGVMAVHMKHLEA 449 Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGREVECLTWISEGKTSDEI 206 ++ + L + K + H K LT RE++ L + +G ++ EI Sbjct: 450 AKEAEVYVTALIGIGTMIMKQNNYHGPKQQLNMDMLSERLTSREMDVLNLLVQGCSNREI 509 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 A L IS +TV N+I +I +K RS IA + N Sbjct: 510 ADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547 >gi|220913015|ref|YP_002488324.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859893|gb|ACL40235.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 242 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 7/163 (4%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 R M + + + F + + + + + + Sbjct: 79 RLMESALAAPAGSARAELRVVVLTTFDLDEYALAAIQAGASGFLLKDAPPEELLEAIRTV 138 Query: 148 FPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 +I L + L Q N + + LT RE E I++G+++ Sbjct: 139 HRGDAVIAPSTTRRLLDHVAPLLRSQGNERPEHHAAVQR---LTTREREVFQLIAQGRSN 195 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV ++ I+ K + R A+ A +V Sbjct: 196 PEIAAGLFVSEATVKTHVGHILAKLGARDRVQAVVIAYETGVV 238 >gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 226 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 4/133 (3%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + R L + + G ++ P+ + D L+ L +A Sbjct: 91 FAALRAGASGFLLKTARPDELVDAIRTVAAGTSVVAPRVLRRMLD-LFAPHLPTGGRAPA 149 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE++ L ++EG ++ EIA L +S TV ++ ++ K + Sbjct: 150 PDGQDPRLAA---LTPRELDVLRLVAEGASNVEIAAELVVSEATVKTHVGNVFAKLGARD 206 Query: 233 RSGAIAYAVRNNI 245 R A+ A + Sbjct: 207 RVQAVIIAYECGL 219 >gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] Length = 216 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 86/210 (40%), Gaps = 9/210 (4%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + ++ + + + E VG ++ D + ++ + + +R ++ + Sbjct: 9 IRDGLAMLLNLRSELEVVGTAN------DGDEVVRIAEQLQPEIILMDIRMPRINGVEGT 62 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + +R ++ + T ++ ++ + Y + I ++ + G ++ Sbjct: 63 RLIRERFPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQAILTVHAGGAVLP 122 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 +D +I + S + +LT RE++ L I G + EIA L I+ Sbjct: 123 QDITAQIVKELKRTKVVEISGQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEG 182 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV N++++++ K + R+ A YAVR I Sbjct: 183 TVKNHVSNLISKLELRDRTQAAIYAVRYGI 212 >gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida] Length = 223 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 17/210 (8%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 + LT+ + ++LL K D + ++P + K ++ Sbjct: 5 LQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYYDEANLIKDDPIVDYSFSH 64 Query: 109 FCPV----FHTLPE-----NITPPAGMDNRYCSLTFDVA--RIRIGLMLLFPKGRIILRD 157 P+ F + N+ A + Y +F + G++ + D Sbjct: 65 HSPINWSIFEKQKKMSNQINVIEEAKISGLYSGFSFPIHTKDGGFGMISFASSQKEKYID 124 Query: 158 RLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 L+ +L + + +LT RE ECL W EGK+ EI+ ILG Sbjct: 125 NLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEGKSRWEISKILG 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 S TV ++A+ K R +I+ A+ Sbjct: 185 CSERTVTFHLANSQLKLGANNRCQSISKAI 214 >gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIRTVAEGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|329935654|ref|ZP_08285461.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304915|gb|EGG48786.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 4/185 (2%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPENIT 121 R + +V D + + + + V P L F Sbjct: 38 ARGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLTPPAGVTHVPRVLMLTTFDIDDYVYE 97 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 + + A + + ++ ++ L+A + + Sbjct: 98 ALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRR--LIADFAKSRPGGRGGPAQ 155 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E LT ++ G ++ EIA L ++ TV +++ ++ K + R+ A+ +A Sbjct: 156 RLKGLTQRETEVLTLVARGLSNSEIAETLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAY 215 Query: 242 RNNIV 246 + +V Sbjct: 216 ESGLV 220 >gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] Length = 216 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 86/210 (40%), Gaps = 9/210 (4%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + ++ + + + E VG ++ D + ++ + + +R ++ + Sbjct: 9 IRDGLAMLLNLRSELEVVGTAN------DGDEVVRIAEQLQPEIILMDIRMPRINGVEGT 62 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + +R ++ + T ++ ++ + Y + I ++ + G ++ Sbjct: 63 RLIRERFPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQAILTVHAGGAVLP 122 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 +D +I + S + +LT RE++ L I G + EIA L I+ Sbjct: 123 QDITAQIVKELKRTKVVEISEQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEG 182 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV N++++++ K + R+ A YAVR I Sbjct: 183 TVKNHVSNLISKLELRDRTQAAIYAVRYGI 212 >gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 251 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D + LT RE+E L I +G ++ EIA L I+ TV ++ +I+ K R+ Sbjct: 179 PEDQQLLESCPLTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCADDRT 238 Query: 235 GAIAYAVRNNIV 246 A A+R+ +V Sbjct: 239 QAAVRALRSGLV 250 >gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 267 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L LR+ ++ ++ + +T RE E L WI GK++ EI Sbjct: 171 LLRLVVPFLREAWVRSQMIGGRHDDLPAPHGHAV-----ITVREQEILKWIYLGKSNSEI 225 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ILGIS TV N++ ++ K R+ A+ A+ +++ Sbjct: 226 GQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAIEAHLI 265 >gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 209 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + ++E +L + M + +++ LT RE+E L I++G ++ EIA Sbjct: 117 RKTYNNESVFEAEVLVKMRNRMKQRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|163846970|ref|YP_001635014.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524791|ref|YP_002569262.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668259|gb|ABY34625.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448670|gb|ACM52936.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 1/142 (0%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 RP + FH + A Y D + + + G +I + ++ Sbjct: 75 PRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVAGGGALIHPQIIAQL 134 Query: 163 -GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA+ + LT RE + L +++G T+ EI L +S TV N++ Sbjct: 135 LPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLAQGYTNQEIGEQLALSVGTVKNHL 194 Query: 222 ASIMRKTATKTRSGAIAYAVRN 243 + I K A + R+ A +A + Sbjct: 195 SVIFAKLAVRDRTQAALWAREH 216 >gi|126433026|ref|YP_001068717.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126232826|gb|ABN96226.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 544 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 ++L LA S + G LT RE+E L ++ G T+ EIA L IS T Sbjct: 458 EQLGAAPALAQVAEV---STNAPAGAPSGLTTRELEVLRLLATGATNREIARTLVISEKT 514 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++ +I K +R+ A AYA ++++V Sbjct: 515 VARHLGNIFNKLDVSSRTAATAYAYQHDLV 544 >gi|318061908|ref|ZP_07980629.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318078461|ref|ZP_07985793.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 224 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 3/146 (2%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L A A + + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 137 R---LIADFARQRPAPGKPALRLKALTERETEVLTLVARGRSNAEIAESLVLAEQTVKTH 193 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 194 VSRVLTKLGLRDRAQAVVFAYESGLV 219 >gi|227497785|ref|ZP_03927971.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832785|gb|EEH65168.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 246 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 4/163 (2%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV---FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR ++ + + Q+ + F + A + Sbjct: 82 VRMPGMNGIEATEAITQQCPGTKILILTTFDLDEYAFAGLRAGAAGFLLKDTRPAELAEA 141 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKT 202 + + ++ + + A + D LT RE E L I++G + Sbjct: 142 IRTVASGEAVVSPRVTRRMLEMFASHLPQDGAQDAAEDPRIASLTPREREILVLIAQGMS 201 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L +S TV ++ +++ K + R A+ A + Sbjct: 202 NSEIADQLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 244 >gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + + +RP L F + + Sbjct: 50 DVVLMDVRMPVMDGLEAARRILAGAP-ERPRILMLTTFDLDDYVYAALRAGASGFLLKDA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A + + ++ ++ L+A + A + LT RE++ L Sbjct: 109 PAAELVHAVRVVAAGDALLAPSVTRR--LIADFAARR-PADQSGPVAVAALTPRELDVLR 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV +++ I+ KT + R+ A+ A + +V Sbjct: 166 LIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGLV 216 >gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 254 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 13/128 (10%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE----------IGLLAAYQANMFKSYDV 178 IG ++ + ++E + L+AY+ + S D Sbjct: 124 GAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPSADP 183 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 E T RE++CL W + GKT EIA I+G+S T+ ++ + RK RS I Sbjct: 184 EM---VEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR 240 Query: 239 YAVRNNIV 246 A + Sbjct: 241 LATTLGYI 248 >gi|290956584|ref|YP_003487766.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260646110|emb|CBG69203.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 198 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179 + ++ +A G ++ + I L R L AA H Sbjct: 71 GLALSAADDIGAVRNALAGGVKGYVVTGTRTNIGLPTRPGAAPLGSAARMHRRPPGAPSH 130 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 131 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 190 Query: 240 AVRNNIV 246 A+R I+ Sbjct: 191 ALRTGII 197 >gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 221 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N YC + + + L + + EI AA+ + D+ G D LT Sbjct: 104 NGYCLKGIEAEHLILALRSVAVGASWWDQTGTTEIQ--AAFSKKPTINCDIIEGIDNPLT 161 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 RE E L I+ GKT+ EIA L I+ TV ++ +I++K + R+ A A+++ Sbjct: 162 QREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAILQKLDVRDRTQAAIIALQH 217 >gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 211 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+N + Sbjct: 151 LTKREKEVLREITKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 217 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G L R + R + + +A F +LT RE E L W+++G + Sbjct: 109 GRTELLSAIRSVARGQCYVDPKVAGLLLGAFHKKQDEADMLCDLTDREKEVLFWLAQGLS 168 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EI+ + +S TV N+++ I++K + R+ A A R I Sbjct: 169 NLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVGI 211 >gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T LT V R +G + P ++ L E LA+ Sbjct: 91 HADVLEAVKSGATGYLLKSASTEELTDAVRRTAVGDPVFTPGLAGLV---LGEYRRLAS- 146 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 147 --EPGPPAGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 204 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 205 QLHNRVELVRYAIERGL 221 >gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 211 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 12/159 (7%) Query: 91 ALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 L L R + +F + D+ + + Sbjct: 60 GLDGAQTTERALARRPDLRIITLSMFGEESYYSRMVQAGARGFLLKDSDIGDVIEAI--- 116 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 ++ + LL++ M DV D +L+ RE E L + G ++ EIA Sbjct: 117 ---DAVMSGGSYFSPQLLSSLTGRMRTRDDV---PDEQLSVREREILVAVCRGLSNQEIA 170 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS+ TV+ + A+I+ KT K + + YA+RN IV Sbjct: 171 DELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 209 >gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14] gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14] Length = 209 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 4/91 (4%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R+ ++E +L + M K +++ LT RE+E L I++G ++ EIA I+ Sbjct: 122 RESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIK 177 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++++I+ K + R+ A+ YA ++N++ Sbjct: 178 TVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074] gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074] gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 6/175 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 50 DVVLMDIRMPGTDGLAATRLISADPALDTVRVVMLTTFEVDEYVVRALRAGASGFLGKGS 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREV 191 + A + + + ++ GL+A++ A D G E LTGRE Sbjct: 110 EPAELLGAIRVAHAGEALLSPAATK--GLIASFLAQSGHGADERPGAREERLAALTGRER 167 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++DEIA L +S TV ++ M K + R+ + A +V Sbjct: 168 EVLVHVAGGLSNDEIAGRLQVSPLTVKTHVNRAMAKLGARDRAQLVVTAYETGLV 222 >gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] Length = 320 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E W++ GKT+ +IA IL +S TVN ++ I K + R+ A+AY Sbjct: 256 QLTQREAEVSHWLALGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAY 310 >gi|148983791|ref|ZP_01817110.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923938|gb|EDK75050.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301799497|emb|CBW32043.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 210 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 83 PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136 P +V + + E + L + P V L P Y T Sbjct: 47 PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + I + E+ Y N + ++ ELT RE + L Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G + IA L IS TV ++++I+ K R+ A YA ++++V Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQHHLV 205 >gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] Length = 219 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + ++ ++ +S + K LT REV+ L IS GK++ EIA L IS TV + Sbjct: 125 DPRIMKHVLTHVARSANSVADKVNRLTDREVDVLKEISTGKSNKEIAAALFISEKTVKTH 184 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 +++++ K + R+ A +A++ I Sbjct: 185 VSNLLGKLELQDRTQAALFAIQAGI 209 >gi|311895893|dbj|BAJ28301.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 2/143 (1%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 RP L F + + A + + ++ ++ Sbjct: 80 RPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRR-- 137 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+A + N + LT RE E L I+ G ++ EIA L ++ TV ++ Sbjct: 138 LIADFARNRPAPRRDPRLRLNGLTPRETEVLELIARGLSNQEIAAHLVLAEQTVKTHVGR 197 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R+ A+ A + +V Sbjct: 198 ILGKLDLRDRAQAVVLAYESGLV 220 >gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 15/177 (8%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 Q LD+ + + +R + + +L E ++ TL D Sbjct: 301 QVVLLDAQLPEGQSLEALRQIKQLNLNTRVLMLST-QEREDYLYETLRAGADGYLLKDVS 359 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 L + + G +L+ P+ LA + + LT R Sbjct: 360 SEELAEALRVVARGEVLVQPQ--------------LAGRLLSRVGRERERGARSEVLTTR 405 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L + G + EIA L +S TVN ++A+I +K R+ A++ A+ +V Sbjct: 406 ELEVLRLLVRGLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGLV 462 >gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 281 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 8/106 (7%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 TF+V +GL++ P +LR ++ I + A +A V K + L+ RE+E Sbjct: 180 TFNVQDSLMGLLM--PHIDNVLR-KIQHIEPVDASEAES-----VSVIKSYNLSVRELEI 231 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + W+ +GKT EIA+IL IS+NTV +++ + K R+ A+A Sbjct: 232 IDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVAK 277 >gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] Length = 171 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 48 ISQPCWAAQGVFGLLSFVRAGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 107 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 167 Query: 243 NNIV 246 ++ Sbjct: 168 FGLL 171 >gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 19/218 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 ++ R++ +D + +L E VG + V +L + K D ++ Sbjct: 1 MMIRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAENGKVAVELALKLKPDVVLMD----- 55 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRI 142 VR + ++ ++ E+ V T ++ M+ Y + Sbjct: 56 -VRMPIMDGVAAMRSLAEQQPEIKVLVLTTFDDDEYITQAMESGAKGYLLKDTPSDELAQ 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + ++ +G L L+E + A Y+ + G +LT RE+E L I +G + Sbjct: 115 AIRAVY-QGYTQLGPGLFEKVMAAKYK---PSRDEPLPGYLQDLTPRELEVLRLIGKGYS 170 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + EIA L IS TV N+++SI+ + + R+ A Sbjct: 171 NREIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 208 >gi|21222167|ref|NP_627946.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256786745|ref|ZP_05525176.1| two component system response regulator [Streptomyces lividans TK24] gi|289770639|ref|ZP_06530017.1| two component system response regulator [Streptomyces lividans TK24] gi|10432460|emb|CAC10294.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289700838|gb|EFD68267.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+A + S + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 137 R--LIADFAQQRPASRGKPALRLKGLTERETEVLTLVARGQSNTEIARTLVLAEQTVKTH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220 >gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 220 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 44/82 (53%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A + F LT RE++ L +++G ++ EIA L IS NTV N+I +I Sbjct: 136 MATKLLDEFVQISRTPAPAASLTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRNI 195 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K K+R A YAVR+ +V Sbjct: 196 LEKLQMKSRMEAAMYAVRSRLV 217 >gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 219 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q + + L+ RE E L + EGKT+ EI L +S TV N+++ I+ K Sbjct: 134 QVMSLIRGEKAASQISGLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKL 193 Query: 229 ATKTRSGAIAYAVRNNIV 246 RS A A+ R +++ Sbjct: 194 GVSNRSQAAAFMARRSVI 211 >gi|120403052|ref|YP_952881.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] gi|119955870|gb|ABM12875.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] Length = 521 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + RL E+ + A QA ++ H + LT RE+E L ++ G ++ EIA L Sbjct: 424 RERVREGRLDEVAVEAVLQAAGHRARG-HSPRPGGLTPREIEVLCLVARGASNKEIAATL 482 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GIS T N++ K R GA +A+ + +V Sbjct: 483 GISGKTARNHVERTYAKIGATNRIGASMFALNHGLV 518 >gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 202 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L A + D + LT RE E L ++EG + IA LGIS +T ++ + Sbjct: 119 LEAPLAGEWLRPPDAPLAAE-GLTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNA 177 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K ++R+ AI A R +V Sbjct: 178 ILGKLGVESRAEAIVRAARLGLV 200 >gi|302522529|ref|ZP_07274871.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302431424|gb|EFL03240.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179 + ++ +A G ++ + + L R L A+ H Sbjct: 92 GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPGRPGTAQLGAASRTHRRPPGTPSH 151 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 211 Query: 240 AVRNNIV 246 A+R I+ Sbjct: 212 ALRTGII 218 >gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 222 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 3/138 (2%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + V + Y D ++ ++ ++ L+A Sbjct: 83 VMLTVSEDADDLTAALKAGARGYLLKNIDADFLKQSIIKAAAGESVMSEA--MTAKLMAH 140 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 ++A + +LT RE E L ++++G+++ EIA L ++ +TV ++ +I++K Sbjct: 141 FRAGAPAPSQQQQELE-KLTPREREILGFLAQGQSNKEIARTLDLAESTVKIHVQNILKK 199 Query: 228 TATKTRSGAIAYAVRNNI 245 +R A YAV + + Sbjct: 200 LGLSSRVQAAVYAVEHGV 217 >gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor bescii DSM 6725] Length = 211 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 78/193 (40%), Gaps = 17/193 (8%) Query: 55 YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFC 110 + +F +V ++ ++ + D+V R + + +N+ + + Sbjct: 22 ILELENFEVVSLCTNAKEAIEFLEKKH--ADVVLMDIRMPVMDGIEGTFNIKTKFPNVKV 79 Query: 111 PVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + T E + + Y + D I ++ + ++ ++ +A Sbjct: 80 IILTTFCEEDYIKKSLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKE-------IAL 132 Query: 168 YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 Y +++ K K LT RE+E IS+G ++ EIA +L IS TV NYI SI++ Sbjct: 133 YISDVLKRTSKQLLEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQ 192 Query: 227 KTATKTRSGAIAY 239 K K R+ Y Sbjct: 193 KLNLKNRTQIAVY 205 >gi|240140122|ref|YP_002964599.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens AM1] gi|240010096|gb|ACS41322.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens AM1] Length = 300 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A Sbjct: 231 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 290 Query: 239 YAVRN 243 A R+ Sbjct: 291 VAARH 295 >gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor hydrothermalis 108] gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 211 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 17/193 (8%) Query: 55 YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFC 110 + +F +V ++ ++ + W D+V R + + +N+ + + Sbjct: 22 IIELENFEVVSLCTNAKEAIEFLKM--WHADVVLMDIRMPVMDGIEGIFNIKTKFPNVKV 79 Query: 111 PVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + T E + + Y + D I ++ + ++ ++ +A Sbjct: 80 IILTTFCEEDYIEKSLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKE-------IAL 132 Query: 168 YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 Y +++ K K LT RE+E IS+G ++ EIA +L IS TV NYI SI++ Sbjct: 133 YISDVLKRTSKQLLEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQ 192 Query: 227 KTATKTRSGAIAY 239 K K R+ Y Sbjct: 193 KLNLKNRTQIAVY 205 >gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] Length = 248 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +AA Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGR 166 Query: 172 MFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S + ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 PENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248 >gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 1/171 (0%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + + P L F + + Sbjct: 52 DVVLMDVEMPVLDGLEATRRITADATPGGPAVLILTTFDRDDYLFAALRAGASGFLLKNG 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ +I L + + H +LT RE E L Sbjct: 112 TPEDLIDAVRVVARGEGLIAP-ALTRRVISTFARPGAAPPDPRHDAATADLTPREREVLE 170 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA +L + TV +++ ++ K + R A+ +A + +V Sbjct: 171 LVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 221 >gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] Length = 240 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++CLTW ++GK++ EIA I+ + TV ++++ +K R A+ A+ Sbjct: 176 LTNREIQCLTWAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRALLGGH 235 Query: 246 V 246 + Sbjct: 236 I 236 >gi|108797407|ref|YP_637604.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866491|ref|YP_936443.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108767826|gb|ABG06548.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692580|gb|ABL89653.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 544 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 ++L LA S + G LT RE+E L ++ G T+ EIA L IS T Sbjct: 458 EQLGAAPALAQVAEV---STNAPAGAPSGLTTRELEVLRLLATGATNREIAHTLVISEKT 514 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++ +I K +R+ A AYA ++++V Sbjct: 515 VARHLGNIFNKLDVSSRTAATAYAYQHDLV 544 >gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 217 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 2/145 (1%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161 + + F + + D + + + ++ L Sbjct: 73 ETARVIVLTTFDRDDYLFDALGAGASGFILKNSDPTELVAAVRAVANGDALLSPSVTLRV 132 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 I +A A + + LT REVE L ++ G ++ EIA L +S TV ++ Sbjct: 133 IRAMAQGHAPREVTPGAD-AELARLTDREVEVLRALARGLSNAEIAAELFVSEATVKTHV 191 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++++ K + R A+A+A ++ +V Sbjct: 192 SNVLSKLGLRDRVQAVAHAYQHGLV 216 >gi|294055674|ref|YP_003549332.1| transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293615007|gb|ADE55162.1| transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 269 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 17/135 (12%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK- 182 G+DN +C++ +R I + KG E LL A QA++ + + W + Sbjct: 116 LGIDN-HCAVHVPSSRNEINFFGIERKGGPDFTSE--EKALLEAAQAHLTNARALAWERS 172 Query: 183 -------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 LT RE E L+W++EGK++ EIA+++GIS VN++I +I KT Sbjct: 173 LSNHSPINPEKLAQHGLTTRESEILSWLAEGKSNGEIAILMGISSYRVNDHIQAIHTKTN 232 Query: 230 TKTRSGAIAYAVRNN 244 T +R A +A+R N Sbjct: 233 TPSRPAAALWAIRAN 247 >gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 123 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 158 RLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 RL G A + + G D LT RE+E L+ ++EG ++ IA LGIS + Sbjct: 31 RLARPGEAADAVLTLPPGSAATPDAGPDVGLTPREIEVLSLLAEGASNKAIARRLGISVH 90 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T ++ S++ K R+ A+A+A R ++ Sbjct: 91 TAKFHVGSLLDKLDATGRTDAVAHAARRGVI 121 >gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 218 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVI 209 I + E L A + + + + +LT RE++ L +++G ++ EIA Sbjct: 116 AIRAAQRNEAVLHPEVAAKLMQEFSAPRSSETTVDQLTPREMDVLRLVAKGMSNKEIADT 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS T ++++I+ K R+ YA+R +V Sbjct: 176 LVISEKTTKTHLSNILSKLHLADRTQVAIYALRKRLV 212 >gi|163852797|ref|YP_001640840.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163664402|gb|ABY31769.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 300 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A Sbjct: 231 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 290 Query: 239 YAVRN 243 A R+ Sbjct: 291 VAARH 295 >gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 257 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILG 211 + L +I L Q + K+ + L+GRE+E + W+++GKT+ EI +IL Sbjct: 167 PYIDSALRQIEHLPEQQPTLIKAEPEPKDESLNILSGRELEIMDWVTKGKTNQEIGMILD 226 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAY 239 IS TV N++ I +K R+ A+A Sbjct: 227 ISAFTVKNHLQRIFKKLNVMNRAQAVAK 254 >gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1] gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] Length = 237 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 18/234 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R L + + + + + G F F S++P + Sbjct: 5 REGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKS 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARI 140 + +++ + P+ + G+ + + S+ Sbjct: 65 RYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYG 123 Query: 141 RIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 I ++ L I LW +L A ++ V + LT RE E Sbjct: 124 LISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETE 182 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GKT EI +IL I + TV +I + MRK + ++ A A ++ Sbjct: 183 MLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236 >gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 219 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + + + A + + EL+ RE+E L I+EG ++ EIA L +S T Sbjct: 125 EAVLHPRVAARVVRELHGARRAEPNVFQELSDREMEVLKLIAEGLSNAEIAARLYVSEKT 184 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V +++++I+ K R+ A YA R +V Sbjct: 185 VKSHVSNILGKLHLADRTQAAVYAWREGVV 214 >gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 267 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 7/158 (4%) Query: 92 LSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 LS ++ L R ++ TL ++ D + R + Sbjct: 106 LSRPFRWSEAPKLMRLSQEGERYMQTLADSG----LGDGVAMQVYGPNMRNAYVGLGFGE 161 Query: 150 KGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + D ++E+ A + + + L+ REVE L WI+ GK++ IA Sbjct: 162 HDPNLTSDEIFELQCAAQIAHIRYCELTEYRQRTADTLSPREVEILQWIARGKSNSVIAE 221 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ILGISR+TV+ I K R+ A + + +V Sbjct: 222 ILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGLV 259 >gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S] gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 265 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 146 LLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGK 201 + + L ++ L + A+ S D+H ++ +L+ RE+E + W+ GK Sbjct: 160 YMLESLLPYIDSALRQLEHLPVQHPADKEASEDLHEEENEALEQLSSREIEIMEWVRNGK 219 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 T+ EI +IL IS TV N++ I +K R+ A++ Sbjct: 220 TNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257 >gi|297193150|ref|ZP_06910548.1| response regulator receiver protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151658|gb|EDY65235.2| response regulator receiver protein [Streptomyces pristinaespiralis ATCC 25486] Length = 557 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 4/173 (2%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 V S + L+ D ++ P + R C D Sbjct: 385 VLSVMAAAARGSVDLAAGDARSALIALRRAELGWRELDAPYETAHVRMLIGRACRALGDD 444 Query: 138 ARIRIGL----MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 I L + RL AA + + G LT RE Sbjct: 445 ETAGIELEAARVGFERLRAAPDLARLDPFPRDAAAEQAPRHAPAHGPGGVLRLTPREQAV 504 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ GK + EIA L IS +TV +I +I K +R+ A +A +++V Sbjct: 505 LRLVAAGKHNREIASELVISEHTVARHIQNIFAKLDVSSRTAASVFAYEHHLV 557 >gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf-5] gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 252 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 161 EIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 LLA + +LT RE ECL W +EG TS EIA L S+ T+N Sbjct: 163 HFTLLAHALQEHLYPQLSKCVRSYPVDLTRRERECLKWAAEGMTSGEIAERLQRSQATIN 222 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ S M K + R A+ AV ++ Sbjct: 223 LHLTSAMHKLGARNRVQAVVRAVHYRLL 250 >gi|37528381|ref|NP_931726.1| hypothetical protein plu4562 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787819|emb|CAE16934.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 238 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 17/222 (7%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 + +++L+ + R+ Y+G + + + + + ++ ++ + Sbjct: 3 TSFNEILSEIKKSKTMPELEKRLLNAINYLGFEFYSIYQEEKYPFTTKKYVLITNLNIET 62 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVF----------HTLPENITPPAGMDNRYCSLTFD 136 ++ P T+ ++ + + N S+ Sbjct: 63 ASNYNQDNNHDSDQLMNGDYTFSIPSVCNDKISKNTDFTIEKSNSNKNEVKNS-LSIKIK 121 Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190 + + K I + L + G+L K+++ K + L+ RE Sbjct: 122 GYHGERSIFSVARKEGTISHNEILNKAGVLGILANECIKTFNNLKNKKDKIIIPTLSTRE 181 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 VE + W EGKTS EIA IL IS TVN +I ++M K Sbjct: 182 VEVIRWTCEGKTSAEIADILDISTRTVNFHINNVMEKLVVPN 223 >gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQMLSRNGAL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] Length = 214 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 44/82 (53%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L +Y + D ELT RE++ L ++ G ++ EIA L IS +T+ +++ Sbjct: 132 MMQLISYYEEKGGAKKEEPQLDIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHL 191 Query: 222 ASIMRKTATKTRSGAIAYAVRN 243 +I RK K R+ A A+A RN Sbjct: 192 YNIFRKIDVKNRTQATAWAKRN 213 >gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 262 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 96/262 (36%), Gaps = 22/262 (8%) Query: 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE---YVGASHF 61 ++ ++ + E + R S VS ++ L C + + +G H+ Sbjct: 1 MKHISRRRSNEGQHRPSLVSDRVQTGAPAP-LMRLACATDIPSLVESFGHAAGKLGFPHY 59 Query: 62 LLVRWDLFQE----QKLDSIVSSDWPFDLVR-----CMALSEKDKYYNVLQRPTELFCPV 112 ++ R + + ++ + +P + VR A ++ LQ + + Sbjct: 60 VISRVTRSRSTCARRTALEMIGARYPQEWVRHYQHRDYASTDPVHRAAFLQSAPYRWHDI 119 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIR-IGLMLLFPKGRII------LRDRL-WEIGL 164 V + G +LLF + + RL + I Sbjct: 120 IGLSKAERRLLDEAREAGLPAGLSVPLHQSDGSILLFNLSGPLHSVNDAINSRLAYLISA 179 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ + S LT R++ECLTW++ GKTS EI ILG S TV+ +I Sbjct: 180 QFHFELHRLASMPSRRAAHL-LTARQLECLTWVARGKTSAEIGEILGRSHYTVDYHIKEA 238 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 M ++R+ A +A + I+ Sbjct: 239 MEALNIRSRTAAAVHATVHGII 260 >gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 210 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTL-PENITPPAGMDNRYCSLTFD 136 P +V + L D + ++ ++ + HTL E + + + YC Sbjct: 47 PDLIVMDIGLPRLDGIAATKQIKEQLPDIHIVMLTSHTLQTEVVAALSSGADAYCIKGAS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195 + R L + +A + K ++ L + RE+E L Sbjct: 107 LER-------LLAAIEAAKDGATYLDPQIARLVLDNLKPPTPEPNQNLALLSERELEVLK 159 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ +V Sbjct: 160 LIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210 >gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 230 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 8/184 (4%) Query: 68 LFQEQKLDSIVSSDWPFDLV--RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP--- 122 ++ ++ ++D L+ R L D + RP V T ++ Sbjct: 43 ADGDEVFAAVATTDPDVVLMDLRMKRLGGIDATRQLRSRPGAPPVLVLTTFDDDQLLSGA 102 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + + + + G + + L+AY+ + + + Sbjct: 103 LRAGAAGFLLKDSPAEDLIRAVRTVAGGGAWLDPAVTGRV--LSAYRT-VRPAPARRDDR 159 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE E L I G+ + EIA LGIS TV +++ I K + R+ AI +A Sbjct: 160 LAELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRAAAIVFAFD 219 Query: 243 NNIV 246 + +V Sbjct: 220 HGVV 223 >gi|329939256|ref|ZP_08288592.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301485|gb|EGG45379.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 238 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V +A +E+ L+ L + T + Sbjct: 64 DVVVMDIRMPEVDGLAATERICADPDLRDCRVLILTTYETDENVARALRAGAGGFVGKGI 123 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L+A + A +S + LT RE E ++ Sbjct: 124 GAEELAEAVRTIAGGETLLSPAATR--SLVARFLATPDESTPHDSARLAVLTPREREMVS 181 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA + +S TV ++ M K + R+ + A R +V Sbjct: 182 LVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGLV 232 >gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] Length = 191 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ R + + + + A + EL+ RE+E L I+ G T+ E Sbjct: 83 LVETVRRGVQGESIMHPRVAARVVNEIRAMKQASPYPFSELSERELEVLRLIARGLTNAE 142 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 IA L IS TV ++++I+ K R+ A +A Sbjct: 143 IAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181 >gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] Length = 218 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 44/79 (55%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L Y +Y + + ELT REV+ L + +G ++ EIA L IS +T+ +++ +I Sbjct: 139 LLTYYKGKESNYIIEPAIEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNI 198 Query: 225 MRKTATKTRSGAIAYAVRN 243 RK K R+ A ++A RN Sbjct: 199 FRKIEVKNRTQATSWAKRN 217 >gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L + + A A + + DV L+ RE E L I+EG T+ +IA L +S TV Sbjct: 131 LLDPAVTARVLARLREGTDVGRASAV-LSTREREILVLIAEGLTNRQIAGRLHLSEKTVK 189 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244 NY++SI+ K +R+ A YA R + Sbjct: 190 NYVSSILDKLGLSSRTQAAVYAARRH 215 >gi|295838502|ref|ZP_06825435.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197699551|gb|EDY46484.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 234 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 18/231 (7%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 P R + R++ +D + + A ++ G H + V + + V P + Sbjct: 11 PERDAPVVRVLLVDDHRMFRAGVRAEIDHPG-EHGVTVVGEAADAEAAVRSVRELMPDVV 69 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFH-----------TLPENITPPAGMDNRYCSLTF 135 + + L +VLQR EL V + I Y + Sbjct: 70 LLDVHLPGGGG-LSVLQRCAELVMDVEKPVRFLALSVSDAAEDVIGVIRAGSRGYVTKAI 128 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + +G + RL +L A+ N D K LT RE + L Sbjct: 129 NGTELVAAIHRV-KEGDAVFSPRLAGF-VLDAFSNNTVPPVDEELDK---LTQRERDVLR 183 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G + EIA L IS TV +++++++RK R +A +V Sbjct: 184 LIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAARRLV 234 >gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 4/144 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + P + F A + + R+ + ++ ++ Sbjct: 78 RGPRIVMLTTFDLDEYVYDALAAGASGFLLKDMTAERLFEAVRVVAAGDALLAPTVTRR- 136 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ + + + LT RE E L I+EG ++ EIA L +S TV +++ Sbjct: 137 -LIGEFV--RLRPHTAEPSPLALLTPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVS 193 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R+ A+ A +V Sbjct: 194 RVLAKLGARDRAQAVMLAYEFGLV 217 >gi|254562561|ref|YP_003069656.1| response regulator [Methylobacterium extorquens DM4] gi|254269839|emb|CAX25817.1| putative response regulator; input and output domains: CheY and LuxR family [Methylobacterium extorquens DM4] Length = 302 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A Sbjct: 233 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 292 Query: 239 YAVRN 243 A R+ Sbjct: 293 VAARH 297 >gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 13/171 (7%) Query: 83 PFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ +++ D P + F T + + Sbjct: 49 PDIVLMDISMPRMDGLTAARKLLDWPDPPKVVMLTTFDTDENLYAALRAGTSGFLLKVSP 108 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLT 195 ++ + ++ D L + + A+ +D +LT RE+E L Sbjct: 109 PEQLVEAIRVVVGG------DALLDPAVTTRVIASFAGRHDPAPPPQLADLTPRELEVLR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++ G T+ EIA L + TV ++A ++ K + R+ A+ +A + +V Sbjct: 163 FLARGLTNAEIAGQLFVGEATVKTHVARVLMKLHLRDRAQAVVFAYESGVV 213 >gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 235 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 8/137 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 F L + I P AG + + + G ++ + ++ + + E A YQ Sbjct: 104 FFIRLDKGILPFAG-----IAFPLRLGFHKNGYVVFTAECLMLANEVIIEAHG-ACYQVI 157 Query: 172 M--FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 M + LT RE CL +G TS+EIA LG+S +TVN Y+ S K Sbjct: 158 MGFLALFKKRSSAARNLTERETSCLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLD 217 Query: 230 TKTRSGAIAYAVRNNIV 246 R AIA A+R + Sbjct: 218 AVNRIQAIAKAIRFGYI 234 >gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 239 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 9/185 (4%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------FCPVFHTLPENITP 122 E++L +++ S WP R + +QR V + Sbjct: 54 EEQLSNVLMSRWPAAWSRRYSSKGYLTEDPTIQRVRSSIEAFEWSELSAVSIAARNIMEE 113 Query: 123 PAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 A N ++ + + + + L+A Y Sbjct: 114 AADFGLNHGFTVPLHTLDGEYAALSIAGDRCELPASFRGVVQLMATYAFAKAIGQKRAIN 173 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L WI+EGKT EI+ ILG+S + V+ + K R I+ A+ Sbjct: 174 ASPRLTIREADVLHWIAEGKTDWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAM 233 Query: 242 RNNIV 246 R ++ Sbjct: 234 RLGVI 238 >gi|320011002|gb|ADW05852.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 13/178 (7%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNR 129 S P ++ + + E D + RP L F + Sbjct: 46 SVHPDVVLMDVRMPEMDGLAAARELLTPPKGAVHRPKVLMLTTFDVDDYVYEALRAGASG 105 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTG 188 + A + + ++ ++ L+A + + LT Sbjct: 106 FLLKDAPPADLISAVRVVAAGDALLAPSVTRR--LIADFARRKPAAPSGGPALRLNGLTP 163 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L I+ G ++ EIA L ++ TV +I ++ K + R+ A+ +A + +V Sbjct: 164 REREVLELIARGLSNQEIAARLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 221 >gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1] gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 530 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +AA A + LT REVE L +++G+++ EIA L I+ T N++ + Sbjct: 439 VAAVLAAAGQRVSRRTPWPAGLTDREVEILRLVAQGRSNREIAADLFIAEKTARNHVERV 498 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K R+ A A+ +V Sbjct: 499 YAKLGVNNRTQASLAAIDRGLV 520 >gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 209 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 4/90 (4%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + ++E +L + M K +++ LT RE+E L I++G ++ EIA I+ T Sbjct: 123 ESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIKT 178 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++++I+ K + R+ A+ YA ++N++ Sbjct: 179 VKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|108805307|ref|YP_645244.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766550|gb|ABG05432.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 229 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 6/163 (3%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 M + + T + H + + L + + + + Sbjct: 65 QMDGLQATRVIKAEHPATAVLMVTTHASDDYLFEAIKAGASGYVLKEATKQQLVDSIRVT 124 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTS 203 +G + L I LL +S + K LT RE+E L ++ G + Sbjct: 125 LRGEPSINQELA-IQLLRRLAREAHESANSPPAKRLPELCEPLTPREIEILRLLARGLKN 183 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L IS TV ++ I+ K R+ A A+ I+ Sbjct: 184 RQIAEHLVISPGTVKVHVQHIIAKLGVSDRTQAAVRAIELGIL 226 >gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus pseudintermedius ED99] Length = 209 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 14/166 (8%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARI 140 DLV + + + + + + + E+ +D + Y T I Sbjct: 54 MDLV-MTDMDGVEATMQIKKDLPHIKVVMLTSYIEDKEVYRALDAGVDSYILKTTSANDI 112 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + + L + M LT RE+E L IS+G Sbjct: 113 AEAVRKTSRGESVFEAEVLVK----------MRNRMKQRAELYELLTEREMEILLLISKG 162 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA I+ TV ++++I+ K + R+ A+ YA ++ ++ Sbjct: 163 YSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLI 208 >gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 248 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +A Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGR 166 Query: 172 MFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S + ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 PENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248 >gi|256391148|ref|YP_003112712.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357374|gb|ACU70871.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L L F + Sbjct: 52 DLVLMDIRMPVLDGLEATRLIAADPALGSVKVLILTTFEQDEYVAEALRAGAGGFLGKGV 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + ++ ++ L+A + A + LT RE+E +T Sbjct: 112 DPEELLRAIRIVAGGNSLLSPAATR--ALIARFLAQPSDTAPTVSAPLDALTARELEVVT 169 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G +++EIA L ++ T ++ M K + R+ + A + +V Sbjct: 170 LVATGLSNEEIAGQLFVTPLTAKTHVNRAMTKLGARDRAQVVVIAYESGLV 220 >gi|188582813|ref|YP_001926258.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179346311|gb|ACB81723.1| two component transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A Sbjct: 232 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 291 Query: 239 YAVRN 243 A R+ Sbjct: 292 VAARH 296 >gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 916 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 90/247 (36%), Gaps = 11/247 (4%) Query: 8 VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT-EYVGASHFLLVRW 66 V VL+ + Q L L+ ++ + E++ +H+ R Sbjct: 672 VRAVLDGLESQIMIEQGDLEAAGQLITNIVATPSEFQYLPTAAFYAREHITRAHY-EWRL 730 Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 +Q+ D D +L +E + + L + + Sbjct: 731 AHYQDTG-DCQALHDLAMELSTPSG-TELWQRLSPLDAALLRGLALAAAGDDATEAILSA 788 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFK--SYDVH 179 + S + G L +++ R RL + + LL Y+ + S Sbjct: 789 LDLATSERIVTPFQQAGEPLRRILNQLLSRQRLPPFGEYLLSLLDDYEPSPIAVLSTPSS 848 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E L ++EG+++ EIA L I+ +TV +++ +I K +R+ A+A Sbjct: 849 DALPEPLSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVAR 908 Query: 240 AVRNNIV 246 R ++ Sbjct: 909 GRRLGLI 915 >gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 240 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 77/224 (34%), Gaps = 15/224 (6%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93 + + + + +L G F+L +E+ ++ I + DW F + Sbjct: 17 IDAAETFQTIQTEVRSLVAPFGYDRFVLFSASAAREEPIERIYWIEGDW-FGNGDPVTEE 75 Query: 94 EKDKYYNVLQRPTELFCPVF--HTLPENITP------PAGMDNRYCSLTFDVARIRIGLM 145 + + + P F T EN P G + G M Sbjct: 76 TYIRRCAITRHILGAREPFFWTKTFRENGELYRVVNLPRGPGIHGLQVPVFGPSGLEGAM 135 Query: 146 LLFPKGRIILRDRLWEIGLLA---AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 L W + LLA Y A V L+ RE E LTW + G+ Sbjct: 136 SLGGTQINASPTTKWILTLLAVAAFYSARKLIEAPVASAIAV-LSDREREVLTWTAAGRR 194 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA LG+S T+ N++ I + T + AI A+RN + Sbjct: 195 QFEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNGEI 238 >gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806] gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 210 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 14/177 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTLP-ENITPPAGMDNRY 130 + S P +V + L D + + + + HTL E I A + Y Sbjct: 41 LALSLRPDLVVMDIGLPRLDGIAATKQIKEGLANVHVVMLTSHTLQQEVIAALASGADAY 100 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGR 189 C + R L + +A + K V + L + R Sbjct: 101 CIKGASLDR-------LLAAIEAAKDGATYLDPQIARLVMDNLKPPAVQPNPNLALLSER 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L I EGK++ EIA L +S NT+ ++ IM K A R A A+R+ IV Sbjct: 154 EMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGIV 210 >gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 6/157 (3%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPE-NITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 +S ++ + +L P T + +G+ + F + L F + Sbjct: 81 MSRPFYWHEI----QDLIPPSAQTDAYLDRLRASGLGDGLAFYVFGPGLRNAYVGLGFGR 136 Query: 151 GRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + + ++++ + +A K+ L+ RE + L WI++GK++ IA I Sbjct: 137 PVVDLPPEQIFRLQCVAQAGHLRVCELSDQAPKEAALSPREKQVLDWIAKGKSNSVIAEI 196 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +TV+ ++ SI RK R+ A V + ++ Sbjct: 197 LAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVL 233 >gi|289768783|ref|ZP_06528161.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698982|gb|EFD66411.1| two-component system response regulator [Streptomyces lividans TK24] Length = 332 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D + L V + G LL P+ L+A + Sbjct: 197 VYDALAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITK---------RLIAEFVHA 247 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V D LT RE E LT I+ G ++ EIA L I+ +TV +I + K + Sbjct: 248 RGSRLPVPAAGD--LTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELR 305 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 306 DRAQAVIVAYELGLV 320 >gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10] gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10] gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis] gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D106004] gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D182038] gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 245 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 D+ + + +V + +I ++L+F +++ L + + + K Sbjct: 132 DSIFFDESIEVNKEKIQMLLIFIHDKMLG---------LYNKSHHENNTLNKKENKREIF 182 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE E L W S GKT EIA+ILGI ++TV +I +I+RK AI + ++ Sbjct: 183 SPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242 >gi|218531623|ref|YP_002422439.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218523926|gb|ACK84511.1| two component transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 300 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A A Sbjct: 231 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 290 Query: 239 YAVRN 243 A R+ Sbjct: 291 VAARH 295 >gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 39/75 (52%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + ELT RE E L +SEG T+ IA L IS TV +I IM+K + Sbjct: 440 QLEQQSFMFTLRLELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQAR 499 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+A A++ ++ Sbjct: 500 DRTQAVALAMKYGLI 514 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + L W+ +GKT+ +IA ILG+S TVN ++ I K +TRS A A Sbjct: 259 LTPRESDVLLWLGKGKTNRDIADILGMSPRTVNKHLEHIFVKLGVETRSAAAVLA 313 >gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 3/162 (1%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 +R ++ + V + E+ + T ++ ++ + Y + I Sbjct: 55 IRMPRVNGVEGTRLVRGKFPEVKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 ++ + G ++ +D +I + S + +LT RE++ L I G + Sbjct: 115 ILTVHGGGAVLPQDITAQIVKELKRTKVVDTSEQSVPNQIEQLTEREIDVLREIGLGLNN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L I+ TV N++++++ K + R+ A YAVR I Sbjct: 175 KEIAEKLFITEGTVKNHVSNLIGKLELRDRTQAAIYAVRYGI 216 >gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] Length = 248 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +AA Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248 >gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 229 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 16/230 (6%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ + C + + G H + + + S++P + Sbjct: 1 MVFEIGSCTCMDELGRMLIDIGHLAGFDHVCYQEYRMSGGTLKNCRTLSNYPEAWLSLYR 60 Query: 92 LSEKDKYYNVLQRPTELFCP------VFHTLPE----NITPPAGMDNRYCSLTFDVARIR 141 + Q P +F T + + G+++ S Sbjct: 61 DRAYLTIDPIAQHALSSLMPLIWGDRIFATTEQREFRDEGRIYGLNDG-VSFPAHSRHGD 119 Query: 142 IGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + R + + L+A + + + L+ RE+E L W Sbjct: 120 VACVSFVRQARALDDGDMPCDVPSWGALVANLMLDACRRLEAVQSDAPCLSTRELEILKW 179 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EGK++ +I+ I+ ++ + V ++I SIM+K TR A+ A R ++ Sbjct: 180 VAEGKSTWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGLL 229 >gi|256378541|ref|YP_003102201.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922844|gb|ACU38355.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 226 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + L L F IT + + Sbjct: 50 DVVLMDLRMPDVDGIEATRRICADERLAGVRVLVLTTFDDDENVITALQAGASGFLGKNV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D A + + ++ ++ GL++A+ A G D +TGRE E + Sbjct: 110 DPAELVTAIRVVAEGNALLSPKATR--GLVSAFVAQSRPPAVAAPGLDL-VTGREREVMV 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++D IA L +S TV ++ M K + R+ + A +N +V Sbjct: 167 LVAHGMSNDAIARHLFLSPLTVRTHVNRAMAKLGARDRAQLVVIAYQNRLV 217 >gi|219683473|ref|YP_002469856.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621123|gb|ACL29280.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|289178826|gb|ADC86072.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 234 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 2/137 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E G+ Sbjct: 98 VMSAINAGASGFLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGR 157 Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + LT RE E L I+ G ++ EIA L IS TV ++A I++K Sbjct: 158 QQSEVAAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKIN 217 Query: 230 TKTRSGAIAYAVRNNIV 246 + R A+ +A N++V Sbjct: 218 ARDRVQAVVFAYENHLV 234 >gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 248 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +A Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGR 166 Query: 172 MFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S + ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 PENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248 >gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 220 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 8/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQA 170 + L E + D ++ V ++ G M+L P+ +L D E L ++ Sbjct: 90 IAEALEEGASGYLLKDMSADTIVKAVMTVQSGGMVLPPELTAQMLNDLKREKQLKGIHEK 149 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 K +LT RE+E L + G + EIA L I+ TV N++++I+ K + Sbjct: 150 EKPKEL-------LDLTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSV 202 Query: 231 KTRSGAIAYAVRNNI 245 + R+ A Y+VR + Sbjct: 203 RDRTQAAIYSVRYGV 217 >gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1] Length = 228 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 5/160 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 +R + L+ P + ++ L A I + Sbjct: 69 MRNIDGITATTMVQSLREPPPVLVLTTFDDDVLLSRVLRAGAAGFILKDSPAEALIWAVR 128 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + L + E +L ++ + V ELT RE + L I+ G+T+ EI Sbjct: 129 AVVRDGAFLDPAVTER-VLQGFRRAGREQVPVAP----ELTDRESDVLRLIARGQTNTEI 183 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A LGIS TV +++ I K + R+ AI YA + +V Sbjct: 184 ASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYAFDHGLV 223 >gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 213 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQMLSRNGAL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 212 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ LT ++ G + EIA L I+ TV + +I RK R+ A++ A++ Sbjct: 147 EEELTARELDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQ 206 Query: 243 NNIV 246 +V Sbjct: 207 RGLV 210 >gi|307151536|ref|YP_003886920.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981764|gb|ADN13645.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 232 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + L + + G L P I+ ++ + Sbjct: 97 VLAAFAAGADSYCMKNISIELLLEAIKATQEGNSWLDPAIARIVISQVQSPKIKIPKDLE 156 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + G+ + LT RE+E L I +G ++ IA L I+ TV ++ +I+ K Sbjct: 157 LLEPESNVRGETYSLTERELEVLQLIVDGYSNAAIADKLFITVGTVKTHVRNILNKLCAD 216 Query: 232 TRSGAIAYAVRNNIV 246 R+ A A+R +V Sbjct: 217 DRTQAAVRALRAGLV 231 >gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella ovis ATCC 25840] Length = 235 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182 S A+ GL+ G + + ++ ++ +M++ DV Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE E L W SEGKT++ I IL IS TVN +I++++ K + A+A A Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKART 231 Query: 243 NNIV 246 ++ Sbjct: 232 FGLL 235 >gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 240 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L GR I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++I +S +TV ++ +I K R+ + A+ ++ Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGLI 239 >gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6] gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6] Length = 464 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + ++ RE E L ++ G ++ +IA L IS NTV ++ +I KT +R+ A Y Sbjct: 1 MSNENPISEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIY 60 Query: 240 AVRNNIV 246 A+ + V Sbjct: 61 AINHGFV 67 >gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 211 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 214 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L P + F + Y Sbjct: 50 DVVLMDMRMPVMSGLEALQMLSRNGAL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 108 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 163 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 164 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214 >gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307] gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp. RCC307] Length = 235 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 170 ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A F D G + +L+ RE E L +SEG + EIA L IS+ TV ++++++ K Sbjct: 154 AAAFHPDDEAEGLEALDQLSSREQEVLQALSEGYCNREIAQRLFISQETVKTHVSTVISK 213 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R+ A A+R ++ Sbjct: 214 LGVRDRTQAAVMALRMGLL 232 >gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149] gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149] Length = 221 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 3/176 (1%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++ +V D + + + + RP L F T + + + Sbjct: 45 DRVEADVVVMDIRMPTMDGVEATRRICADRPGDRPRVLVLTTFDTEADAFAALQAGASGF 104 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + ++ ++ + A Q + D +LT RE Sbjct: 105 LLKNVPPEELLAAIRVVAEGDSVVAPSITRRLLDRFAGQFGPGPAADPRLA---QLTERE 161 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L +++G ++ EIA + ++ TV ++ I+ K + R A+ A + +V Sbjct: 162 REVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLAYESGLV 217 >gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 212 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 4/90 (4%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + ++E +L + M K +++ LT RE+E L I++G ++ EIA I+ T Sbjct: 126 ESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIKT 181 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++++I+ K + R+ A+ YA ++N++ Sbjct: 182 VKTHVSNILSKLEVQDRTQAVIYAFQHNLI 211 >gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis] Length = 245 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 D+ + + +V + +I ++L+ +++ L + + + K Sbjct: 132 DSIFFDESIEVNKEKIQMLLILFHDKMLG---------LYNKSHHENNTLNKKENKREIF 182 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE E L W S GKT EIA+ILGI ++TV +I +I+RK AI + ++ Sbjct: 183 SPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242 >gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 4/153 (2%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V + + + + + +FH + + + + S I + + Sbjct: 111 VSGILQGDGAAHCPFGRALRNMRSSLFHGISDERGHHDCLYVVFSSKDKLDDSTLIAMEI 170 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L P L L + L + D L+ REVE +TW+ +GKT+ EI Sbjct: 171 LLPY----LDTALRRVTPLPQHSCRPSLLADAPEYDLHGLSEREVEIMTWVRKGKTNAEI 226 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 IL IS TV N++ I RK R AI+ Sbjct: 227 GSILRISSYTVKNHLHQIFRKLDVYNRVQAISK 259 >gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 226 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 17/210 (8%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 A++ Y+ S F + Q + + P ++ + + + D Y V Q+P Sbjct: 17 AVSAYLEDSGFEVTAVANAQAAL--EYLETHVPDVIITDIMMPQMDGYAFLETVRQQPHL 74 Query: 108 LFCPVFHTL-----PENITPPAGMDNRYCSLTFDVARIRI---GLMLLFPKGRIILRDRL 159 PV + I + Y + FD + L+ R L Sbjct: 75 SHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLLRRQAAARDEAEPNL 134 Query: 160 WEIGL----LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 E+ L A K + +LT RE L + +G + EIA L S Sbjct: 135 AELAQQIAELRAMLVQQGKRHPTAPPIQLDLTPREASVLQLVVKGLMNKEIASQLNTSVR 194 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + Y++ + KT T +R+ + +A+ + + Sbjct: 195 NIEKYVSRLFVKTGTSSRTELVRFALEHGL 224 >gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 71/201 (35%), Gaps = 22/201 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC--- 110 +Y+ + ++ E +++ P ++ + + + D Y V + Sbjct: 28 DYLEMQGYRVLTAAHGNEGL--AMLQQQTPDLVICDVMMPQMDGYSFVSAVRQQTHLSWL 85 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + I + Y F+ + + L + RL E Sbjct: 86 PVLFLSAKGQTHDRIKGLQTGGDVYLVKPFEPEELLAQIQALLKQ-----TARLREAQ-- 138 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 ELT E L +++ G ++ EIA L +S+ TV +++++++ Sbjct: 139 -----GRQALPGPTPPPGIELTPTETRILQYVARGMSNREIAAELHVSQRTVESHVSNML 193 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 KT R+ +A+ + V Sbjct: 194 GKTGCHNRTELARWAIDYHYV 214 >gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 10/222 (4%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV-- 87 +D R++ +D + + + F +V ++ ++ S L+ Sbjct: 2 TDEPIRLLLVDDQDLVRVGLRRILRR--RDGFEVVGECADGDEVPAAVAESRPDVVLMDL 59 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGL 144 R +S + + +R V T ++ A + + + + Sbjct: 60 RMKRVSGMEATRRLGERTDAPPVLVLTTFRDDDLLSAALRAGVAGFVLKDSPAEELIRAV 119 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 L+ ++ + L Y+A + G LT REV+ L + G ++D Sbjct: 120 RLVAAGEAVLDPAVTGRV--LQTYRAARQPAT-TRAGAVDPLTAREVDVLGLVGRGLSND 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L IS TV ++I SI K + R+ AI +A N +V Sbjct: 177 DIAAELVISIVTVKSHIGSIFTKLGVRNRAEAIVWAFDNGVV 218 >gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 213 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 7/217 (3%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R+ +D + +L G + D Q L VS D +R A+ Sbjct: 1 MIRVCLVDDQTLVRQGIRSLLALDGGIEVVAEACDGRQAVDLIPQVSPDVVLMDMRMPAM 60 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFP 149 S + + + + T ++ AG+ Y + ++ + + Sbjct: 61 SGLEALQLLSRAAALPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVAA 120 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 G ++ LL+ + ++ V + LT RE E L ++ G ++ EIA Sbjct: 121 GGSLVQPVVTQR--LLSGLE--QMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANS 176 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 177 LGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231] gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19] Length = 234 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 8/137 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D L V + ++ P L R+ + Q + Sbjct: 96 VMEAVENGASGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIR------SGQTD 149 Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 H +D LT RE+E L I+ GK++ EIA L IS TV ++ ++ KT Sbjct: 150 KKPDGLKHINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTG 209 Query: 230 TKTRSGAIAYAVRNNIV 246 ++ R A+ +A + +V Sbjct: 210 SRDRVHAVLFAFKRGVV 226 >gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 7/173 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D +A + L L F T + + Sbjct: 50 DIVLMDIRMPGTDGLAATSAICADPELAATRVLILTTFETEDYVAQALRAGASGFLGKDV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192 + GL + ++ L+ + M + H ELT RE E Sbjct: 110 TADTLLAGLRTVASGEALLSPAATR--TLITNFL--MTPAPGTHLAPPQSLSELTDRERE 165 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + +EGK++ EIA IL +S TV +I M K + R+ + A + + Sbjct: 166 VMGLAAEGKSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218 >gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae] Length = 277 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F+ +V ELT RE E L I+ G ++ EIA L +S +TV +++ +++ K ++ Sbjct: 201 FRRAEVSDVDPDELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRS 260 Query: 233 RSGAIAYAVRNNI 245 R A+ YA + Sbjct: 261 RVQAVVYAYEIGL 273 >gi|158314991|ref|YP_001507499.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110396|gb|ABW12593.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 + VR + +++ P V + + D+Y VF L + Sbjct: 53 MDVRMPGVDGITATAQITARHPASRVLILTTFDVDQY-------------VFDGLRAGAS 99 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 D L + + G +L P L DR AA A+ Sbjct: 100 GFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRF------AALPADSGSDRAARPE 153 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE E ++ G ++ EIA L +S +TV ++ I+ K + R A+ A Sbjct: 154 IVHDLTEREREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAY 213 Query: 242 RNNIV 246 + +V Sbjct: 214 ESGLV 218 >gi|170751099|ref|YP_001757359.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657621|gb|ACB26676.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 196 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + +LA + ++ +D LTGRE E LTW S GKTS EIA+IL + TVN Sbjct: 108 DFEMLAVVVEHRLRAGRGGQSQDAFGHLTGREREVLTWASRGKTSAEIALILDLRERTVN 167 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + M++ R+ A+A A+ ++ Sbjct: 168 FHFDQAMKRLNVVNRTHAVARALSLRLI 195 >gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 221 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 15/223 (6%) Query: 32 LLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 + R++ +D + AL E VG + L +E + + +V D Sbjct: 1 MAIRVMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVLALAEESRPEVVV-----MD 55 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 L + + ++++ E+ + + E + R L Sbjct: 56 LQLGAGRNGVEATRELVEKKPEIKVVILSMYDDEELVFRALESGARGYVLKRAGIEELTT 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + L +G L ++ + + F G ELT RE+E L +EG T+ Sbjct: 116 AIRLVARGEAYLDPQIARRVIEGLQERLPFTRASRPEGP--ELTERELEVLRLAAEGLTN 173 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS TV + A+IM+K R + YA++N I+ Sbjct: 174 AEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGIL 216 >gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] Length = 219 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 44/82 (53%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L +Y + D ELT RE++ L ++ G ++ EIA L IS +T+ +++ Sbjct: 137 MMQLISYYEEKGGAKKEEPQLDIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHL 196 Query: 222 ASIMRKTATKTRSGAIAYAVRN 243 +I RK K R+ A A+A RN Sbjct: 197 YNIFRKIDVKNRTQATAWAKRN 218 >gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143 +R L D V++ + V T + + + + ++ Sbjct: 59 IRMPRLGGIDATERVIRSAPDTKVLVLTTFDLDEYVYDALRAGASGFLLKDASAEQLAEA 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ ++ L+ + + LT RE E L I++G ++ Sbjct: 119 VRVVAAGDGLLAPGVTRR--LITEFTRMRSGPRSPLKERVGTLTERETEVLALIAQGLSN 176 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ TV ++ I+ K + R+ A YA + +V Sbjct: 177 AEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESGVV 219 >gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 6/139 (4%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + V + + IT Y + L L + + R+ + Sbjct: 81 VILSVSDDVADLITAIQFGAQGYLLKNLEPDDWINYLHALLGEDSELTRE------MATR 134 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + LT RE E + ++ GKT+ EI+ L I+ NTV N++ +I+ K Sbjct: 135 LMYRFRQEEATDEMVPAVLTPREREIVMYVGAGKTNREISEALIIAENTVKNHLKNILEK 194 Query: 228 TATKTRSGAIAYAVRNNIV 246 R AYAVR+++V Sbjct: 195 LQLANRVQLAAYAVRHHLV 213 >gi|186682209|ref|YP_001865405.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464661|gb|ACC80462.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 232 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 8/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGM---DNR 129 +V+ P ++ + + E D ++Q + V T ++ M Sbjct: 48 ELVAELQPDVVLMDIRMPEMDGRTATKLIMQSFPNIKVLVLSTFDDDSYLTGAMRAGAKG 107 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + + G L++ LL A+ + + K E+T R Sbjct: 108 YLLKDMPSSELADAIRF-GHSGYTQFGPGLFD-KLLVTEAASASANQNSASSKPSEITAR 165 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E E L I G T+ EIA L I+ TV ++ SI+ + K RS YA Sbjct: 166 EQEVLCLIGVGATNREIAQQLYITEGTVKTHVTSILSRLNLKNRSQLAIYA 216 >gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 228 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 8/134 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D R L V + + P L L EI QA Sbjct: 93 VLEALRNGAHGYLLKDLRPEQLYDMVRSVMRNETPISPGVAGRL---LREI-----RQAG 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +T RE+E L ++EG ++ EIA L I+ TV N++ + + K Sbjct: 145 KPRVTSPAATTEQSVTRRELEILRLVAEGLSNKEIAKRLVITEGTVKNHVHNALEKLHMD 204 Query: 232 TRSGAIAYAVRNNI 245 R A AY +R + Sbjct: 205 NRIQAAAYVIRQGL 218 >gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] Length = 268 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132 D V P V + V + P + I D C Sbjct: 67 DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 122 Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168 L D + +G + + R + R R + L Sbjct: 123 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 182 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + D + LT REV+CL W + GKT EIA IL I+R TV Y+ + K Sbjct: 183 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 241 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+A A+ I+ Sbjct: 242 NCSNRTSAVATALSLGII 259 >gi|291444348|ref|ZP_06583738.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347295|gb|EFE74199.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 10/176 (5%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRY 130 P ++ + + E D + RP L F + + Sbjct: 43 HHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGF 102 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 A + + ++ ++ + A Q + + LT RE Sbjct: 103 LLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALRLNGLTPRE 162 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ G ++ EIA L ++ TV +I ++ K + R+ A+ +A + +V Sbjct: 163 SEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 218 >gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445] gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330] gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis biovar Abortus 2308] gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M5-90] Length = 259 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132 D V P V + V + P + I D C Sbjct: 58 DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113 Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168 L D + +G + + R + R R + L Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + D + LT REV+CL W + GKT EIA IL I+R TV Y+ + K Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+A A+ I+ Sbjct: 233 NCSNRTSAVATALSLGII 250 >gi|134298790|ref|YP_001112286.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] gi|134051490|gb|ABO49461.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] Length = 119 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 MDN + F + I + + + + ++ + + ++ + Sbjct: 1 MDNIGTIIQFGTNDVGINCFCKKVIEEALSQG--YRLIVIDSKVEYVKENGKERTSNVNQ 58 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L I++G ++ IA L IS TV N++ SI K R+ A YAV N Sbjct: 59 LTNREFELLKLIAKGISNKAIAKQLFISEKTVKNHLTSIYSKLGVTNRTEATLYAVNN 116 >gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus aggregans DSM 9485] Length = 917 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++EG+++ EIA L I+ +TV ++I +I K +R+ A+A R Sbjct: 855 PLSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRLG 914 Query: 245 IV 246 ++ Sbjct: 915 LI 916 >gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 303 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + F +T RE + W+++GKT+ EIA I+ IS TVN ++ + +K A R+ A A A+ Sbjct: 236 EQFGITKRESDVFLWLAKGKTNREIAQIIDISPRTVNKHLEQLFKKLAVDNRTTAAAMAI 295 Query: 242 R 242 + Sbjct: 296 Q 296 >gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 231 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 6/169 (3%) Query: 83 PFDLV-RCMALSEKDK-YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 P D+V + + + D L R PV + R + F + Sbjct: 60 PADVVVMDLRMRQVDGITATGLVRALPEAPPVLVLTTFDEDELVSGALRAGAAGFILKDS 119 Query: 141 RIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 +++ + + L +LA Y+ + + ELT RE+E L + Sbjct: 120 PAEELVMAVRSVALGDAWLDPAITGRVLATYR-SAVAPPASRAVEVSELTDRELEVLRGL 178 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G T+ EIA L IS TV ++I I K + R+ AI +A + IV Sbjct: 179 ASGWTNSEIAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHGIV 227 >gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 234 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 19/189 (10%) Query: 76 SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENIT-----PPAGMD 127 ++ + P ++ + + + D Y + + P PV + +T Sbjct: 44 ELLQKNPPDLVISDIMMPQVDGYQFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGC 103 Query: 128 NRYCSLTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMF-------KSY 176 + Y S FD + + L + +I LA A + Sbjct: 104 DAYISKPFDPDELVAIVTNLLVRRAAAKESGENTETPDITALANQMARIESFLTGRSAIA 163 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE L +++G + EIA L S V Y++ + KT T +R+ Sbjct: 164 QSPSPIKIDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTEL 223 Query: 237 IAYAVRNNI 245 + YA+ + + Sbjct: 224 VRYALEHGL 232 >gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 213 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQMLSRQEQL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 +A++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 TLAQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNDFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4] gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4] Length = 178 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R + LA A+ + +LT RE++ L +S+GK++ +I L +S Sbjct: 86 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 145 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + RK + R+ A+A+ R +V Sbjct: 146 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 177 >gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 211 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A Sbjct: 144 KENPFAMLTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAAL 203 Query: 239 YAVRNN 244 YAV++ Sbjct: 204 YAVKHR 209 >gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 1/171 (0%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + + P L F + + Sbjct: 52 DVVLMDVEMPVLDGLEATRRITADATPGGPAVLILTTFDRDDYLFAALRAGASGFLLKNG 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ +I L + + H +LT RE E L Sbjct: 112 TPEDLIDAVRVVARGEGLI-ASALTRRVISTFARPGAAPPDPRHDAATADLTPREREVLE 170 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA +L + TV +++ ++ K + R A+ +A + +V Sbjct: 171 LVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 221 >gi|171912646|ref|ZP_02928116.1| methyl-accepting chemotaxis sensory transducer [Verrucomicrobium spinosum DSM 4136] Length = 331 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D LT RE E L W+ EGK++ EI VILGIS +TV ++ ++ K + R Sbjct: 258 DGSPQAPDETLTAREKEVLEWMQEGKSNPEIGVILGISTHTVKRHVERVLAKLGVENRVA 317 Query: 236 AIAY 239 A Y Sbjct: 318 AALY 321 >gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 301 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 162 IGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + ++A Y N + + + L+ RE+ECLTW + GKT ++IAVIL +S +TV Y Sbjct: 213 LAMIANYFDNFAIRRFGGPPKESQSLSKRELECLTWSARGKTVEDIAVILDLSADTVRVY 272 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + + +K RS A+A A+ ++ Sbjct: 273 LKRVNQKLDAVNRSHAVAKAMCLGMI 298 >gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 223 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F L D + V + G L+ P I R + E LAA + Sbjct: 90 IFEGLKAGARGYLLKDISSEEMAEAVRTVARGEALIQPS---IARKVVAEFSRLAA--GS 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE++ L ++ G ++ EIA L I+ TV +I++I+ K + Sbjct: 145 PPAPERSPLKLPAALTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVR 204 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A + ++ Sbjct: 205 DRTQAVLKAQQLRLL 219 >gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 248 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +AA Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248 >gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 3/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + R+ + ++ ++ L Sbjct: 80 PRVIILTTFDLDEYVYDALRAGASGFLLKDVTAERLFDAVRVVAAGEALLAPTVTRR--L 137 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + + V + LT RE E L ++EG ++ E+A L +S TV +++ + Sbjct: 138 IGEFVQSKQPRP-VADARLASLTPRETEVLRLVAEGLSNPELAARLTVSEETVKTHVSRV 196 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ A+ A + +V Sbjct: 197 LHKLGLRDRTQAVVAAYESGLV 218 >gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 248 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +AA Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGR 166 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S +LT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 PENSATTSTTDSTYTDPELDDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248 >gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 211 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 238 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 23/192 (11%) Query: 60 HFL---LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116 H++ L R D Q SI DW LS + + +V R + F Sbjct: 62 HYMRMNLHRVDPTIHQSARSIAPVDW-------TRLSRGESFNSVFYRAND-----FGLT 109 Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 + +T P DV + + + +++ RD++ E+ + A + + Sbjct: 110 DQGLTVPVRGPFG------DVGLLSVTRSCSEREWKLLTRDKISELQMAAVHLHDSVMQS 163 Query: 177 DV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 DV + L+ RE E L W + GKT +I IL IS TV ++ S K T Sbjct: 164 DVLSRALRRPSLSARETEVLQWTAIGKTQQDIGDILSISHRTVEVHMRSAREKLGALTTI 223 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 224 QAVGRAIGYQII 235 >gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri] gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri] gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 17/219 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 14 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 74 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 17/219 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 14 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 74 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 133 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|329940179|ref|ZP_08289461.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301005|gb|EGG44901.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 46/81 (56%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA H G EL+GREVE L ++EG+++ I V +G+S TV +++A I Sbjct: 138 AARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIA 197 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK T R+G +A A+R I+ Sbjct: 198 RKLGTGDRAGMVAVALRTGII 218 >gi|328881870|emb|CCA55109.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 229 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 8/177 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 50 DVVLMDIRMPGTDGLAATRMITADPELSDVRIVMLTTFEVDEYVVQSLRAGASGFLGKGA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHWGKDFELTGR 189 + + +G + + G +L GL+A + A + ++ + LT R Sbjct: 110 EPEEL-LGAIRIAHAGEALLSPA-ATKGLIATFLAQGPGAEAVGEAGRARSERLAALTAR 167 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L ++ G ++DEIA L +S TV ++ M K + R+ + A + +V Sbjct: 168 EREVLVLVAGGLSNDEIAERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 224 >gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 205 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 I + + E A M + LT RE+E L I+ G ++ EIA Sbjct: 109 AEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREMEILLLIANGYSNQEIASAS 168 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV ++++I+ K + R+ A+ YA +++++ Sbjct: 169 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 204 >gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFE 185 + Y + D I ++ + ++ ++ +A Y +++ K + K Sbjct: 99 ADGYILKSSDAKHIVNSILSVLDGKVVMDKE-------IALYVSDVLKRTSKQLFEKTQN 151 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E IS+G ++ EIA +L IS TV NYI SI++K K R+ Y Sbjct: 152 LSERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13] gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13] gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13] Length = 259 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132 D V P V + V + P + I D C Sbjct: 58 DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113 Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168 L D + +G + + R + R R + L Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + D + LT REV+CL W + GKT EIA IL I+R TV Y+ + K Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+A A+ I+ Sbjct: 233 NCSNRTSAVATALSLGII 250 >gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] Length = 259 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132 D V P V + V + P + I D C Sbjct: 58 DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113 Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168 L D + +G + + R + R R + L Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + D + LT REV+CL W + GKT EIA IL I+R TV Y+ + K Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+A A+ I+ Sbjct: 233 NCSNRTSAVATALSLGII 250 >gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family [Leptospirillum ferrodiazotrophum] Length = 219 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 15/140 (10%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 +L +F D+ SL + + +G + + P+ Sbjct: 95 QLEGEIFGAFSSGADGYCLKDSELDSLILGIQAVALGSLYVDPRI--------------- 139 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A+ A + L+ RE E L ++EG+++ +IAV LGIS +TV +I SI+ Sbjct: 140 AHLAIRRILSSPAPETETPLSARETEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILV 199 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K + TR+ A A R + Sbjct: 200 KLSAATRADAAVKAFRKGWI 219 >gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840] Length = 268 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132 D V P V + V + P + I D C Sbjct: 67 DLTVLITLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 122 Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168 L D + +G + + R + R R + L Sbjct: 123 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 182 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + D + LT REV+CL W + GKT EIA IL I+R TV Y+ + K Sbjct: 183 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 241 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+A A+ I+ Sbjct: 242 NCSNRTSAVATALSLGII 259 >gi|115526593|ref|YP_783504.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520540|gb|ABJ08524.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 309 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 K+ LT RE E L+W+S+GKT+ +IA ILG+S TV+ ++ I K + R+ Sbjct: 240 DLSKELGLTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 295 >gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 225 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 8/161 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L R ++ + L + T E I + + YC V R+ + Sbjct: 73 LPRLDGIAATQQIKAELPEVRVVILTSHTTDREIIASLSSGADAYCVKGSSVERLLQAIA 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + + S G L+ RE+E L I EG ++ E Sbjct: 133 AAAEGATYLDP-------QIGRQVLKHL-SPPSPTGNVSNLSQRELEVLKLIVEGNSNPE 184 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S NTV ++ IM K + R A A+R+ IV Sbjct: 185 IAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSGIV 225 >gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 214 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + P + F + Y Sbjct: 50 DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 108 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 163 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 164 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214 >gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 92 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R Sbjct: 3 SVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62 Query: 235 GAIAYAVRNNIV 246 + +A+ N + Sbjct: 63 ALLNWAMDNGKI 74 >gi|297571014|ref|YP_003696788.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296931361|gb|ADH92169.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 230 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + A++ + ++ +I L Sbjct: 84 PKILILTTFDEDDYMLEGIRAGASGFLLKDAPTAKMLEAIRTIYQGDAVIAPSTTRR--L 141 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + + + +LT RE E I+ G T+ EIA L ++ TV ++ I Sbjct: 142 VDRLATDSIRLHASKPEVLDDLTDREREVFYLIARGLTNTEIADRLYVAEATVKTHVTRI 201 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 K + R A+ A I Sbjct: 202 FAKLGVRDRVQAVVIAYEAGI 222 >gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 211 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L I+ TV ++++++ K R+ A YAV+ Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] Length = 248 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +AA Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248 >gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 247 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ I LGIS +TV ++ +++ K ++R+ A+ A+R + Sbjct: 184 LTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQAVVQAIRRGL 243 Query: 246 V 246 + Sbjct: 244 L 244 >gi|110634798|ref|YP_675006.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285782|gb|ABG63841.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 554 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ GK + IA L +S T++ ++++I K +R+ A A+A R + Sbjct: 494 LTRRELEVLRLVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGL 553 Query: 246 V 246 V Sbjct: 554 V 554 >gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain [Thiomonas sp. 3As] gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 223 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 5/134 (3%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D L + RI+ G L P R ++ Sbjct: 94 FPALQAGAFGYLLKDRPKIELRAQLRRIQDGEPPLSPSI-----ARRMVQHFTHLHRTMS 148 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S ++ + LT RE E L + +G T EIAV LG+SR+TV +Y+ I RK + Sbjct: 149 APSSNLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISS 208 Query: 233 RSGAIAYAVRNNIV 246 R+ A AVR +V Sbjct: 209 RAEAALEAVRRGLV 222 >gi|239940914|ref|ZP_04692851.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987390|ref|ZP_04708054.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 229 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 10/176 (5%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRY 130 P ++ + + E D + RP L F + + Sbjct: 47 HHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGF 106 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 A + + ++ ++ + A Q + + LT RE Sbjct: 107 LLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALRLNGLTPRE 166 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ G ++ EIA L ++ TV +I ++ K + R+ A+ +A + +V Sbjct: 167 SEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 222 >gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR Length = 259 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132 D V P V + V + P + I D C Sbjct: 58 DLTVLITLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113 Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168 L D + +G + + R + R R + L Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + D + LT REV+CL W + GKT EIA IL I+R TV Y+ + K Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+A A+ I+ Sbjct: 233 NCSNRTSAVATALSLGII 250 >gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 260 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-------GRIILRDRLWEI 162 CP L ++ G+ N + +++ + +G L + + + + R + Sbjct: 110 CPSIAELLQDAEK-HGLGNIFVAVSARSQKGAVGCTLFMFEMSPDEDREQFVAKLRPRLL 168 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L + + DV LT REV+CL W + GKT EIA IL I+R TV Y+ Sbjct: 169 SLSGIIHSALCGCKDVATVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQ 227 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K R+ A+A A+ I+ Sbjct: 228 NAKIKLNCSNRTSAVATALSLGII 251 >gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] Length = 239 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 13/223 (5%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93 + + + A+ +G F+L ++ ++ I + DW F + Sbjct: 16 IEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDW-FGTGAPVDAE 74 Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIRIGLM 145 ++ V + E P F T P G + G M Sbjct: 75 TYVRHCPVTRHILETNQPFFWTKTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEGAM 134 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTS 203 L + + L+A + ++ L+ RE E L W + G+ Sbjct: 135 SLGGERIDASPQARLALELIAQTAFRTARRLLELPAQEELGPLSDREREVLAWTAAGRRQ 194 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA LG+S TV N++ I ++ T + AI A+RN + Sbjct: 195 TEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNGEI 237 >gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C] gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C] Length = 233 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA Sbjct: 101 HADVLEAVKSGATGYLLKSAGAQELIDAVRRTAAGDPVFTPGLAGLV---LGEYRRLATD 157 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 158 PAPAAP----DVPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 213 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 214 QLHNRVELVRYAIERGL 230 >gi|25029338|ref|NP_739392.1| putative two-component response regulator [Corynebacterium efficiens YS-314] gi|23494626|dbj|BAC19592.1| putative two-component response regulator [Corynebacterium efficiens YS-314] Length = 225 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EI IL +S TV +++ I K ++R+ A+A A + Sbjct: 165 LTPRELEVLKLVAGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGL 224 Query: 246 V 246 + Sbjct: 225 L 225 >gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 6/146 (4%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 R E V H + +N P + + + ++ + + + L ++ Sbjct: 106 RLDEHAQEVTHYMRDNNMP---CGATVPLHLPNGGFVTLTGIVTDQREERDISETLAQLT 162 Query: 164 LLAA-YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 LA +Q + F +D + +L+ RE ECL W +EG T+ EIA L S TV + Sbjct: 163 FLAHRFQESAFPLFDASMLTCRHVKLSNRERECLAWSAEGLTAKEIARKLHRSVATVTLH 222 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + + +K R A+ A+ ++ Sbjct: 223 LNTAAKKLGATNRVQAVVRALHYRLL 248 >gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 209 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 4/90 (4%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + ++E +L + M K +++ LT RE+E L I++G ++ EIA I+ T Sbjct: 123 ESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIKT 178 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++++I+ K + R+ A+ YA ++N++ Sbjct: 179 VKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C] gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C] Length = 223 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L + E L A +A Sbjct: 94 VYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRL---ITEFSRLGAPRAP 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + ELT RE E L+ I++G ++ EIA L ++ TV ++ I+ K + Sbjct: 151 SRARIE-------ELTERETEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 204 DRTQAAVFAYETGLV 218 >gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 240 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 3/108 (2%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + L + I ++ + + L ++ + LT RE+E L W Sbjct: 135 ESVTSVCTLAEVEKPINAEQKYLVSSLMPVMHSVARGLKFCSR---GLTHRELETLQWAR 191 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GK + EI+VI IS TV ++ +I K R+ A+ A+ ++ Sbjct: 192 DGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCRGLI 239 >gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 210 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 10/217 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + +L E S + V + + +++ P ++ + + Sbjct: 1 MIRVLLVDDQTLVRQGIRSLLE---LSPEMQVVGEAADGEAALGLIAETAPDVVLLDLRM 57 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFP 149 + D + + T ++ G+ Y + ++ + L Sbjct: 58 PKLDGLGVLRALAHPPPTLILTTFDDDALVLDGLRAGAKGYLLKDVSLEQLVTAVRTLAA 117 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 G ++ + + LTGRE E + ++ G ++ EIA+ Sbjct: 118 GGTLVQPAVTERV----LRGLSGVPRDYPSLETPDPLTGREREVVRLMAGGYSNREIALA 173 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS+ TV N+++S++ K + R+ A+ A+ V Sbjct: 174 LHISQGTVKNHVSSVLSKLGVRDRTRAVLKALELGYV 210 >gi|329938110|ref|ZP_08287561.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329302599|gb|EGG46489.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 8/179 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--------FHTLPENITPPAGMD 127 + + P ++ + + D + PV F Sbjct: 41 RVAAETSPDVVLMDIRMPGTDGVRATELILAQATDPVPRVLVLTTFDLDEYVYGALRAGA 100 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + + R+ + + + + A +A + LT Sbjct: 101 SGFLLKDSGPERLLAAVTAVRGGDALFAPSVTRRLVEAYAGRAGHRPRDAEPPPELGALT 160 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE L I G ++ EIA L IS TV ++ M K +R+ A+ A +V Sbjct: 161 TREVEVLGLIGRGLSNLEIADRLYISEATVKTHLNRTMTKLDLDSRAQAVVVAYETGLV 219 >gi|296168969|ref|ZP_06850636.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896355|gb|EFG76010.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 530 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R RL + A +A + LT RE E L ++ G+++ EIA L IS Sbjct: 435 ARGRLDGDAVEAVLEA-AGHRPSRRAVRPEGLTRREAEVLLHVARGQSNREIASALWISE 493 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV N++ I K R GA YA R+ + Sbjct: 494 KTVRNHVERIYAKIGVSNRIGASLYATRHGL 524 >gi|226312583|ref|YP_002772477.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095531|dbj|BAH43973.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 38/79 (48%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA F + +LT RE E L +++G ++ +I+ L IS +TV N++ +I Sbjct: 131 LAFRILKEFAPIGSDVAQPSKLTSREREILGLVAKGLSNRDISSKLVISEHTVKNHLKNI 190 Query: 225 MRKTATKTRSGAIAYAVRN 243 ++K + R YA Sbjct: 191 LQKLHLENRVQLARYAFEQ 209 >gi|254448276|ref|ZP_05061738.1| Two Component Transcriptional Regulator, LuxR family [gamma proteobacterium HTCC5015] gi|198262143|gb|EDY86426.1| Two Component Transcriptional Regulator, LuxR family [gamma proteobacterium HTCC5015] Length = 208 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 8/168 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 LV L D ++ L V H +PE + + G + Sbjct: 42 LVEPFDLLVMDLRMPGMKGMRSL-TGVVHRVPETPVVVISATESQADVNACMEAGVRGFI 100 Query: 146 -------LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + R +L L+ L A Q ++S DV EL+GR+++ L ++ Sbjct: 101 PKSTPAPEMLAILRRVLAGELYHPALEATAQHPSWESDDVDRAAFSELSGRQMQVLAEMA 160 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G T+ EIA +L IS +TV +IA + +R A ++ Sbjct: 161 KGSTNKEIAAVLNISEHTVKTHIAKLFSVLKVNSRVECAQQARLMGVI 208 >gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 216 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 ++ + + W ELT RE + L I++GK++ EIA L IS TV +++ ++ K Sbjct: 133 VQHLTEPKEQKWELMKELTNRERDVLFEIAKGKSNKEIASSLFISEKTVKTHVSHVLSKL 192 Query: 229 ATKTRSGAIAYAV 241 R+ A YAV Sbjct: 193 ELADRTQAALYAV 205 >gi|254822986|ref|ZP_05227987.1| hypothetical protein MintA_23864 [Mycobacterium intracellulare ATCC 13950] Length = 518 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L + + A A + + D LT REVE L ++ G ++ EIA L IS T Sbjct: 426 ELDAVAVEAVLHAAGQPAQRPNLRPD-RLTPREVEVLCLVARGASNKEIAASLVISEKTA 484 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N++ K R GA YA+R+ +V Sbjct: 485 RNHVERTYAKIGVSNRIGASMYALRHGLV 513 >gi|91788405|ref|YP_549357.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91697630|gb|ABE44459.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 230 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 41/83 (49%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL + + K +L+ RE E L ++ G TS EI L IS TVN +I + Sbjct: 148 LLHRLEHTQEAPHPHTAEKRDKLSDREKEVLKAVAAGYTSGEIGSRLMISCQTVNTHIKN 207 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I RK ++R+ A+ +A ++ Sbjct: 208 IYRKLQVRSRAQAVNFAAHRGLL 230 >gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] Length = 921 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%) Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPVFHTLPE 118 +++ + ++ + + + W L + + + + E +F + Sbjct: 752 YMVADQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEQQHLTGLFLDAGD 811 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + P N S + G+ + R + G S D+ Sbjct: 812 TLQPLLAGMNESSS----AGKEEGGVHEPWADKRAPADGTPFNSG-----------SPDI 856 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H EL+ RE++ L I+EG+ + EIA L IS TV +I +I K +R+ A++ Sbjct: 857 HG----ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMS 912 Query: 239 YAVRNNIV 246 A+ ++ Sbjct: 913 RALEMKLL 920 >gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 213 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 64/171 (37%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 + P +V + + D + + L + Sbjct: 42 ELAREHQPDLIVLDLLMPGMDAAATIRSLRSLSPNSRIAVLTSSDDDNLAFSAIEAGAHS 101 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + G LL R+ + + + ++ + + LT RE++ L Sbjct: 102 FLLKSMSGDALLDTLRRLAEGEAVIHPDVAHRILRSVRTARERVTDPFASLTEREMDVLR 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG ++ I +L IS +TV +I +++ K + R+ A+A+A R+ ++ Sbjct: 162 ALAEGSSNGRIGKMLNISESTVKTHIGNVLAKLDLRDRTQAVAFAWRHGLI 212 >gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] Length = 239 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 13/223 (5%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93 + + + A+ +G F+L ++ ++ I + DW F + Sbjct: 16 IEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDW-FGTGAPVDAE 74 Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIRIGLM 145 ++ V + E P F T P G + G M Sbjct: 75 TYVRHCPVTRHILETNQPFFWTKTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEGAM 134 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTS 203 L + + L+A + ++ L+ RE E L W + G+ Sbjct: 135 SLGGERIDASPQARLALELIAQIAFRTARRLLELPAQEELGPLSDREREVLAWTAAGRRQ 194 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA LG+S TV N++ I ++ T + AI A+RN + Sbjct: 195 TEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNGEI 237 >gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] Length = 268 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + + R R + L + D + LT REV+CL W + GKT EIA IL Sbjct: 166 QFLARMRPRLLSLAGIIHGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILS 224 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+R TV Y+ + K R+ A+A A+ I+ Sbjct: 225 IARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259 >gi|158315976|ref|YP_001508484.1| LuxR family GAF modulated transcriptional regulator [Frankia sp. EAN1pec] gi|158111381|gb|ABW13578.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 285 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 2/159 (1%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 + + + +V +R T + P G L L Sbjct: 128 NPVPPAAVETALSVARRFEAFLAERTMTARADAGPTPGGPAGASRLRVLCRVDAELEELS 187 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + G LR+R+ + L + + + F L+ RE++ L ++EG ++ E A Sbjct: 188 YQAGDPALRERIVAVRDL--LEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETA 245 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S TV Y+ SIM K R+ A+ A R++++ Sbjct: 246 RRLAVSPETVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 284 >gi|260584047|ref|ZP_05851795.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] gi|260158673|gb|EEW93741.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] Length = 211 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L I++GK++ EIA I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 150 TSREKEVLLLIAQGKSNQEIADECFITLKTVKTHVSNILSKLQVEDRTQATIYAFKHHLV 209 >gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 70/232 (30%), Gaps = 17/232 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + + R + +G H +L L ++ + + WP + Sbjct: 8 EFVERCRAHTAPGPLLDDVLLTVRNLGFEHLILSGVPLGGQKLAPMVELNGWPEGWFKRY 67 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDV 137 +E V + P G+ + + V Sbjct: 68 VEAEHAAVDGVCIYSAKTLKPFLWADVPAKWSDTKGSRRVAGEATEFGISSGFAVPMLSV 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECL 194 + L L R E+ L+ + G + E LT RE E L Sbjct: 128 HHWQSVLSFASSAKVCALSPR-EEVQLVTMAVYAGMAIQALSHGDEVEEGLLTEREKEVL 186 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GKTS E + ILG++ TV + T + AI AVR ++ Sbjct: 187 LWAAAGKTSSETSQILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRMI 238 >gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] Length = 259 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + + R R + L + D + LT REV+CL W + GKT EIA IL Sbjct: 157 QFLARMRPRLLSLAGIIHGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILS 215 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+R TV Y+ + K R+ A+A A+ I+ Sbjct: 216 IARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250 >gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 236 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 12/179 (6%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDNRYC 131 S++P + E K PV T P G+ + + Sbjct: 56 SNYPLAWIERYQRDEFYKQDPAAALSHTSTEPVLWTDELYSEAPDFREQACKHGLRHGWT 115 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDFELT 187 D+ + + P G+I + + + G L + + + +++ Sbjct: 116 QSLHDLRHNETQVSVARPFGKIDIHELYDKAGQVQWLCHTLHDTICEHHLAKLSSPLKMS 175 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GA+A A+ ++ Sbjct: 176 DRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNASNKAGAVAIAMMRGLI 234 >gi|311742180|ref|ZP_07715990.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314673|gb|EFQ84580.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 899 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 + + + ++ R F R + L + + AA A + D Sbjct: 772 DGWPHMVAICSARLAMRTSAPRAHDLAAAAFAIARRLSSPPLESLAVAAAASAGVDLQID 831 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + D LT RE E L W+S G ++ +IA LGIS TV+ ++++++RK +R+ A Sbjct: 832 LD-DPDPHLTPRESEVLRWVSTGASNRQIARTLGISEGTVSVHVSNLLRKLGVGSRTEAA 890 Query: 238 AYAVR 242 A R Sbjct: 891 VRAAR 895 >gi|145300854|ref|YP_001143695.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853626|gb|ABO91947.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 200 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 1/138 (0%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI- 162 P E+ + P D + + + L R +L+ W Sbjct: 59 WPREISSRFGEANTILLNAPTSTDRELLLMWPHTSGLFFRQDRLVLGIRKVLQGEYWIPR 118 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL K + H LT RE E + ++ G ++ EIA L +S +T+ +++ Sbjct: 119 HLLCDLVNYYRKGGEHHLRNQTLLTAREQEIIRYLMTGASNTEIADSLFVSEHTIKSHLY 178 Query: 223 SIMRKTATKTRSGAIAYA 240 ++ +K + R A+++A Sbjct: 179 NVFKKLNVRNRLQAVSWA 196 >gi|29832624|ref|NP_827258.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609744|dbj|BAC73793.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 215 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T LT V R +G + P ++ L E LA+ Sbjct: 82 HADVLEAVKSGATGYLLKSASTEELTDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 138 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + + +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 139 PA---PATGAGEPRAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 196 QLHNRVELVRYAIERGL 212 >gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129] gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae] gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae] Length = 233 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 2/135 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D L V + ++ P +L + A Sbjct: 90 VVGAVEHGASGFLLKDTAPEDLIAAVRTVGEQSAVISPAATAVLFKSMRGHAPQTDLVA- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D++ G LT RE E L I+ GK++ EIA L IS TV +++ ++ KT ++ Sbjct: 149 -TPGGDINAGLIDPLTPREQEILLLIALGKSNTEIAEELFISLPTVKTHVSKVLSKTGSR 207 Query: 232 TRSGAIAYAVRNNIV 246 R A+ +A +V Sbjct: 208 DRVHAVLFAFSRGLV 222 >gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+E L +++G+++ EIA L + TV ++ +I+ K R+ AI AV+ Sbjct: 136 QLTKRELEVLAQVAKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRG 195 Query: 245 IV 246 ++ Sbjct: 196 LI 197 >gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 382 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 6/135 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P L + + + Sbjct: 249 VYEALYAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRL------VADIVRRRRE 302 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT REVE L ++ G ++ EIA L +S +TV ++++++ K A + Sbjct: 303 RAAADTATPQRLDTLTAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALR 362 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A ++ Sbjct: 363 DRVQAVICAYETGLI 377 >gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 213 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G ++ EIA L IS TV ++ + RK K R+ A+A A I Sbjct: 152 LSAREREVLELVAKGTSNREIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGI 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 359 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ A A+ Sbjct: 290 FKLTAREAEVLYWVVKGKTNKDIGDILGSSPMTVKKHLERVFVKLGVETRTAAAGMAMSR 349 >gi|196232039|ref|ZP_03130894.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223761|gb|EDY18276.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 220 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 12/222 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 DLL ++ + + + ++ E +G + +V + ++ + S P ++ + Sbjct: 2 DLLPSILIAEDDERTCILLQSMLESLG---YPIVGTAGDGMEAVEKTL-SLKPGAVLLDI 57 Query: 91 ALSEKDKYYNVLQRPTELFCP--VFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLM 145 + D + ++ P V + ++ T A + + Sbjct: 58 GMPVLDGLEAARRILDQMLVPIVVLTGMSDDATLEAARALGVQAFLLKPLASKEQLRAAI 117 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 ++ R I L+ + + LT RE E L ++EGK + E Sbjct: 118 VIATTICDRQRADAERIDTLSTSLESTRVKTMPRALGSYGLTRRETEVLHLLAEGKANAE 177 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGA---IAYAVRNN 244 I V LG+S TV ++ I+ K K+R+ A +A A R Sbjct: 178 IGVELGLSPRTVEKHVEHILDKLGVKSRTAATRLVADAGRRK 219 >gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 223 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 YC ++ + L + EI +Y+ + + Sbjct: 97 LIEAGAQGYCLKGIAAEKLVLALRSVASGASWWDATATQEIRSSLSYETPQLEPENRAKL 156 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LTGRE E L+ ++ GKT+ EIA L I+ TV +I +I++K R+ A+ A+ Sbjct: 157 SN-PLTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQAVLVAL 215 Query: 242 RNNIV 246 + ++ Sbjct: 216 QKQLI 220 >gi|309790624|ref|ZP_07685178.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308227352|gb|EFO81026.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 226 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D + +L + + G LL P+ I L +G LA A Sbjct: 94 VFRGIAAGARGYLLKDVDHRALADAIRTVAAGGALLNPE---ITAQILPYLGRLAEQTAP 150 Query: 172 M-FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H + LT RE L +++G ++ EI+ L IS TV N+I+SI+ K Sbjct: 151 APVTTAPPHSERAELLTERERSILQMLAKGCSNQEISAALMISVGTVKNHISSILGKLDV 210 Query: 231 KTRSGAIAYAVRN 243 + R+ A +A++N Sbjct: 211 RDRTQAALWAIQN 223 >gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 13/134 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + + + V + G + P+ I R L Y A Sbjct: 89 VFTAMRAGARGYLLKEAGAEEIGRAVHAVAAGEAIYGPE---IARRVL-------TYFAG 138 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M D ELT RE E L +++G+ ++EIA IL +S TV N++++I K Sbjct: 139 M---PDPSRTAFPELTEREREVLELVAQGRGNNEIAGILFLSGKTVRNHVSNIFMKLQVA 195 Query: 232 TRSGAIAYAVRNNI 245 R+ AI A + Sbjct: 196 DRAQAIVRAREAGL 209 >gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 222 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 13/221 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R+ +D + +L +G + + V + + ++V P ++ + Sbjct: 1 MTVRVCLVDDQTLVRHGIRSL---LGLADDVEVVAEAGDGAEGVAMVVEHRPDVVLLDLR 57 Query: 92 LSEKDKYYNVLQ-RPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + D + + + R L PV F + Y + ++ + Sbjct: 58 MPRHDGMWALGELRARGLDVPVLVLTTFDDDELVLQALRAGARGYLLKDVTLEQLVGAVR 117 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L G +I LL A D EL+GRE+E L ++ G + E Sbjct: 118 TLAAGGTLISPAITER--LLRAVHGVPAPPDD--GAPLQELSGRELEVLRLLAAGYANRE 173 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA +L ++ TV N++++++ K T+ R+ A+ A+ + ++ Sbjct: 174 IAQVLVLAEGTVKNHVSNVLLKLGTRDRTRAVLRALHHGLL 214 >gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 240 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 7/112 (6%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGREVECL 194 +G++ GR ++ + + +A N F+ + LT RE+E L Sbjct: 114 VGMIRDVAHGRYVINESVMSKPHVATRVLNQFRELSNVANNSEDTSSMFAPLTSREIEIL 173 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L IS TV N+I SI+ K R+ A+ +A++ + Sbjct: 174 DCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQQGWI 225 >gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 14/169 (8%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFD 136 VR L+ D +++ E + F L + D L Sbjct: 55 VRMPNLNGIDATARLVEARPEARVLILTTFDLDEYAFAALRAGASGFLLKDVAPVDLIGA 114 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 V + G ++ P+ + R+ E+ ++ D + +LT RE+E L Sbjct: 115 VRTVAGGEAVVSPR----ITRRMLELFAHRLPESGEVPRSDAVHPRLADLTPRELEVLRH 170 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+ +++ EIA L +S TV ++A ++ K + R A+ A + Sbjct: 171 IAGARSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLAYETGL 219 >gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 198 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R + LA A+ + V +LT RE++ L +S+GK++ +I L +S Sbjct: 106 ASRPELVAALAHTLASTSVPTPRVPTDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + RK + R+ A+A+ R +V Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P L A Sbjct: 92 VYAALRAGASGFLLKDVRRDELVRAVRLVAAGESLLAPSV----------TRRLIADVVG 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + ELT RE E L + G ++ EIA L +S +TV ++++S++ K + Sbjct: 142 RGAARPALARRLDELTERESETLRLLGRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLR 201 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ +A + ++ Sbjct: 202 DRAQAVVFAYESGLI 216 >gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 210 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFD 136 P +V + L D + + + + + E + + + YC Sbjct: 47 PDLIVMDIGLPRLDGIAATKQIKEELPHVHVVMLTSHTQQTEVVAALSSGADAYCVKGAS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + R+ + + G L ++ + L N+ K L+ RE+E L Sbjct: 107 LDRL-MAAIDAAKDGATYLDPQIARLVL-----GNLKAPAPQQNLKISNLSERELEVLKL 160 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ +V Sbjct: 161 IVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210 >gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 71/179 (39%), Gaps = 20/179 (11%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHT-----LPENITPPAGMD 127 ++ P L+ +A+ + Y + Q P+ PV + L E I Sbjct: 40 EMIHHYQPHLLITDIAMPNMNGYELVRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGG 99 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y + FD+ + + ++ R +L ++ A + +LT Sbjct: 100 DVYLAKPFDLNELAAVV------RNLLDRAQLVQMEWQQRQHAPKGQRV------RVDLT 147 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE + L + G ++ +I L +S T+ +++S+ +KTA R+ + A+ +V Sbjct: 148 QREKDVLALLVAGLSNAQIGDRLHLSARTIEKHVSSLFQKTAVHNRAELVRLAIEQGLV 206 >gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 210 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 18/173 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLT 134 P +V + L D Q + P H E + + + YC Sbjct: 47 PDLVVMDIGLPRLDGIAATKQIKEQ--QPNIHVVMLTSHTLQTEVVAALSSGADAYCIKG 104 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVEC 193 + R L + +A + K ++ L + RE+E Sbjct: 105 ASLER-------LLAAIEAAQDGATYLDPQIARLVLDNLKPPTPEPNQNIALLSERELEV 157 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ +V Sbjct: 158 LKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210 >gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 213 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELT 187 ++ + +G +L + + R L+ A +LT Sbjct: 89 EAVMKAMRAGAMGYLLKDTQAEELRRAIKAAAAGQVQLSPRAAARLMRDVRAPESPEKLT 148 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE + L ++ G+ + EIA L I TV ++++I+RK +R+ A YAVR +V Sbjct: 149 ERETDVLRLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIGLV 207 >gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] Length = 238 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 8/124 (6%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMF 173 P + + R RIG + + R + + E G + A Sbjct: 109 PHSFEARAGLIVPLPDRRGRIGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAA 168 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R Sbjct: 169 AAVSPALAGLAKLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSR 228 Query: 234 SGAI 237 + A+ Sbjct: 229 TQAV 232 >gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 198 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R + LA A+ + +LT RE++ L +S+GK++ +I L +S Sbjct: 106 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + RK + R+ A+A+ R +V Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|239933765|ref|ZP_04690718.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 212 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 65 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKNAPPADLIAAVRVVASGDALLAPSVTR 124 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+A + + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 125 R--LIADFAKQRPAVRGKPALRLKGLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 182 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 183 VSRVLTKLDLRDRAQAVVFAYESGLV 208 >gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 215 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA Sbjct: 83 HADVLEAVKSGATGYLLKSAGAQELIDAVRRTAAGDPVFTPGLAGLV---LGEYRRLATD 139 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 140 PAPAAP----DEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 196 QLHNRVELVRYAIERGL 212 >gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. BTAi1] Length = 140 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE + L ++EG ++ EIA LGIS +T ++ S++ K R+ A+A+A R Sbjct: 76 FQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARR 135 Query: 244 NIV 246 I+ Sbjct: 136 GII 138 >gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str. 1704B] Length = 239 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 17/233 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D L M L C SW + A T +G L + + SD+ Sbjct: 5 DELLTMSGLGCRRSWFEALKANTCALGCDGLLFALKSDGNADNSQAALLSDYSQAWRAIY 64 Query: 91 ALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMD---NRYCSLTFDVARIR 141 ++ + V+ P+ F T + + SL + Sbjct: 65 DANDYSRIDPVVSHCMSSTSPIVWNDSIFKTPLQLEFREESKGHGVVQGVSLPLHGMAGQ 124 Query: 142 IGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVEC 193 +G++ + + + L + L+ Y + F S + +L+ RE+E Sbjct: 125 VGVLSVRLDSIPQHQLKYHIARILPGLALIRDYAVDTFLSLADEREPNNIVQLSHRELEV 184 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GKT+ EIA IL S +N + A + +K +R AI A++ ++ Sbjct: 185 LKWSAFGKTTWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIVKALQTGLL 237 >gi|126347864|emb|CAJ89584.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 224 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+A + + + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 137 R--LIADFAKQRPTTRGRPALRLKGLTERETEVLTLVARGQSNTEIAQTLVLAEQTVKTH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220 >gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 216 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 31/182 (17%) Query: 69 FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 Q LD + + +WP V + + +D Y VF + Sbjct: 55 IQMPNLDGVQATQEILKEWPQAKVIMLTMYCQDGY-------------VFEAVKAGARGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 D L + R+ G ++L + E ++ ++A + H Sbjct: 102 MLKDADAKELLEAIRRVYQG--------EVLLDAEMAE-QIIQDFKAKQETTPKAHA--- 149 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ REV+ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 150 -ELSEREVQILRLVAQGYTNLEIAAELSLSEKTVRNRLSDIFQKLHLNNRTQAALYALRE 208 Query: 244 NI 245 + Sbjct: 209 GL 210 >gi|269925421|ref|YP_003322044.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789081|gb|ACZ41222.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 224 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 13/135 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L D + V + G +L P +L+ + + Sbjct: 99 VFALLQAGAAGYILKDAHADEVVNAVKAVANGESVLAPSIAK---------KVLSRFTSP 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE++ L ++G+++ IA L +S TV ++++I K Sbjct: 150 STQPEHPSPV----LTDRELDVLRLAAKGESNKAIAQQLHLSPRTVQVHLSNIFNKFGVA 205 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ +A++ ++ Sbjct: 206 SRTEAVLHALKLGLI 220 >gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis] gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis] Length = 219 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 33/54 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE E L W+ GKT+ EI +IL IS NTV N++ I +K R+ A+A Sbjct: 155 LSDREQEILHWVRSGKTNLEIGMILNISANTVKNHLKRIFQKLDVSCRAQAVAK 208 >gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 217 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 31/182 (17%) Query: 69 FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 Q LD + + +WP V + + +D Y VF + Sbjct: 55 IQMPGLDGVQATQEILREWPQAKVIMLTMYRQDAY-------------VFEAVKAGARGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 D L + R+ G + L + L + + Sbjct: 102 MLKDADAKDLLEAIRRVNNG-------------EVLLDAELAEQIIQDFKAKRESVPKPH 148 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EL+ REV+ L +++G T+ EIA L +S TV N ++ I +K R+ A YA+R Sbjct: 149 AELSEREVQILKLVAQGYTNLEIAGELSLSEKTVRNRLSEIFQKLHLNNRTQAALYALRE 208 Query: 244 NI 245 + Sbjct: 209 GL 210 >gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6] gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6] Length = 210 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 44/82 (53%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L +Y + D ELT RE++ L ++ G ++ EIA L IS +T+ +++ Sbjct: 128 MMQLISYYEEKGGAKKEEPQLDIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHL 187 Query: 222 ASIMRKTATKTRSGAIAYAVRN 243 +I RK K R+ A A+A RN Sbjct: 188 YNIFRKIDVKNRTQATAWAKRN 209 >gi|312867898|ref|ZP_07728103.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] gi|311096653|gb|EFQ54892.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] Length = 210 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + + +S H +LT RE + L +++G + IA L IS TV ++++ Sbjct: 123 AIETEVSQKVESRKNHAELHDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSN 182 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K R+ A+ YA R+++V Sbjct: 183 ILSKLEVSDRTQAVVYAFRHHLV 205 >gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 217 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R R +A+ ++ G+ L+ RE E L ++ G ++ EI Sbjct: 119 LFTAVRAAADGRTVLSPAVASRLVCAVRAPRTAGGEP--LSAREREVLALVARGTSNREI 176 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ + K K R+ A+A A I+ Sbjct: 177 ARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGIL 216 >gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 198 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R + LA A+ + +LT RE++ L +S+GK++ +I L +S Sbjct: 106 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + RK + R+ A+A+ R +V Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|159900604|ref|YP_001546851.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893643|gb|ABX06723.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 191 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 42/83 (50%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L+ S D +L+ RE E L ++EG T+ +IA L IS +TV ++++ Sbjct: 107 VLSPSILAQIHSPPQPEPLDNQLSEREHEVLQLLAEGLTNRQIAQRLIISEHTVKFHVSA 166 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K +R+ AI + ++ Sbjct: 167 LLGKLDVSSRTEAIRVGAQRGLI 189 >gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 218 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 14/190 (7%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-------FCPVFHT 115 + QE +V P ++ + + D ++ ++ V Sbjct: 28 IGEASNGQEAL--ELVPKLKPDLVLMDINMPVLDG-VEATRKLKQMYPDLKVVILTVSEI 84 Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + + Y + L I + +L ++ + Sbjct: 85 DKDLFEAIKAGADGYLLKNLGPEELVSSLRAAISGEAPISS--VMAAKMLKEFRQPRANT 142 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 G+ +L+ RE+E L S G T EIA L ++ +TV N++ I+ K + RS Sbjct: 143 TGKQPGQ--QLSPREIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSE 200 Query: 236 AIAYAVRNNI 245 A+ YA+R + Sbjct: 201 AVGYAIRTGL 210 >gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 11/118 (9%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + YC + ++ ++ + +W G +AAY +S +D++LT Sbjct: 103 DGYCVKGIEPEQLLQAILQVRSGH-------VWWDGRVAAY----LRSGPEPERRDYQLT 151 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + L ++ G ++ +I L IS TV ++ +I+RK + R+ A A++ + Sbjct: 152 PRERQVLGLLANGLSNQQIGRQLFISVGTVQVHVHTILRKLGARDRTQAAILALQEGL 209 >gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 198 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R + LA A+ + +LT RE++ L +S+GK++ +I L +S Sbjct: 106 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + RK + R+ A+A+ R +V Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 6/145 (4%) Query: 106 TELFCPVFHTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RIILRDRLWE 161 + H+ P I YC + + + + I + Sbjct: 82 LPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAAGAFWWDAIASQEIQT 141 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 ++ + D + LT RE+E L+ +++GK++ EIA L I+ TV ++ Sbjct: 142 AFQHSSSTGAVLPLADADG--ENPLTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHV 199 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +I+RK + R+ A A+ +V Sbjct: 200 HTILRKLEVRDRTQAALLAIERRLV 224 >gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] Length = 224 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 15/222 (6%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV-SSDW-PFDLVRCM-----A 91 + T + + L + H + + DW L Sbjct: 1 MAQTNPFRQFLDDLRDRFELDHVAYAGMNPISGASHGHMTYGEDWTAHYLQNKYYEIDPT 60 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + + F T+ + G+ +R ++ +G + + Sbjct: 61 LLKARHSIAPVDWHRLERGAEFQTIFRDA-RDFGISDRGLTIPIHGPYGDVGGLSINRDC 119 Query: 152 R-----IILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSD 204 +++ + + ++ A + +M D L+ RE+E L W + GK+ Sbjct: 120 SDREWHLLISEIIGDLQSAAVHMHDMVIQADPLTRMLNSPSLSTREIEILQWTAAGKSQQ 179 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +I IL IS TV ++ S +K T AI A+ ++ Sbjct: 180 DIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221 >gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 226 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 74/227 (32%), Gaps = 18/227 (7%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95 M + + + + G F F S++P + + Sbjct: 1 MSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDY 60 Query: 96 DKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARIRIGLMLL 147 +++ + P+ + G+ + + S+ I ++ L Sbjct: 61 TSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYGLISMLSL 119 Query: 148 FPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 I LW +L A ++ V + LT RE E L W + Sbjct: 120 VRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETEMLKWTAV 178 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT EI +IL I + TV +I + MRK + ++ A A ++ Sbjct: 179 GKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 225 >gi|259505660|ref|ZP_05748562.1| two component system response regulator [Corynebacterium efficiens YS-314] gi|259166742|gb|EEW51296.1| two component system response regulator [Corynebacterium efficiens YS-314] Length = 212 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EI IL +S TV +++ I K ++R+ A+A A + Sbjct: 152 LTPRELEVLKLVAGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGL 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|300932860|ref|ZP_07148116.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 252 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 41/73 (56%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S D G LT RE E L ++ G ++ EIA L IS TV ++ ++ KT ++ R Sbjct: 172 PSLDDDLGLVDPLTPREREILCLVATGHSNQEIAEELFISLPTVKTHVGRVLTKTGSRDR 231 Query: 234 SGAIAYAVRNNIV 246 A+ +A+++++V Sbjct: 232 VHAVLFALKHHLV 244 >gi|218437173|ref|YP_002375502.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169901|gb|ACK68634.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 234 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ + +++ LT RE+E L I +G ++ IA L I+ TV ++ +I+ K Sbjct: 160 VEAENNQSVENYSLTDRELEVLQLIVDGYSNAAIADQLFITVGTVKTHVRNILNKLCADD 219 Query: 233 RSGAIAYAVRNNIV 246 R+ A A+R +V Sbjct: 220 RTQAAVRALRAGLV 233 >gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 225 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----F 184 C A I + +G + + L LA F+ + GKD Sbjct: 103 ACLKKSSTADELIETIRRANRGEYPINESLMTSPNLAKQVLAQFQDVSL-LGKDASNFVT 161 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ + LT I+ G T+ +IA L IS T+ N++++I+RK R+ A+ A+R Sbjct: 162 PLTNRKKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRAHAVVVAIRCG 221 Query: 245 IV 246 ++ Sbjct: 222 LI 223 >gi|297531030|ref|YP_003672305.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254282|gb|ADI27728.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 200 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 +Y+ D+ + LT E+ L I+ KT+ EI L IS+ TV ++++SI+R Sbjct: 120 SYRGVKSFPTDLAFHDGSPLTDMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILR 179 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K K+R+GA+ A R ++ Sbjct: 180 KLHVKSRAGAVGKAFRLGLL 199 >gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 258 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 17/195 (8%) Query: 55 YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT--ELFCPV 112 Y H+ V L ++ +W + + D +R EL Sbjct: 69 YFKDDHYHRVIHPAD---GLIHQLTHEWGAKREPRLIAALTDDPDGWHRRLLDLELKNLA 125 Query: 113 FHTL-PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 FH L + + FD +LL + R +LA +A Sbjct: 126 FHGLCRVDGQMWGYASFSRLRVPFDARLALFMELLLPHLLVTLAR-------VLAN-EAR 177 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D H G +T RE E L W+ +GKT++EIA ILG+S TV N++ M+K + Sbjct: 178 TRSLGDRHAGL---ITAREAEVLAWVRDGKTNEEIAAILGLSMLTVKNHLRHAMQKLVVR 234 Query: 232 TRSGAIAYAVRNNIV 246 TR A+A A+ + Sbjct: 235 TRGQAVARAIALGFL 249 >gi|239932624|ref|ZP_04689577.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440983|ref|ZP_06580373.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343878|gb|EFE70834.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V+ D L+ + + V + P L F + + Sbjct: 50 DVVAMDVRMPLLDGIEATRALLR-TVEEPPKILVVTTFENDEYVYEALRAGADGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + L+ ++ + + A Y + + LT RE E L Sbjct: 109 RPAEIVHAVRLVAEGESLLFPASVRRLA--AEYGDDGGNRAARDVLERARLTEREAEVLR 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L +S TV +++++++ K + R+ A+ A + V Sbjct: 167 LMARGLSNAEIAARLVVSTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217 >gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] Length = 211 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 14/172 (8%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--GMDNRYCSL 133 I+ D D++ + ++K + P V L + PA + Y Sbjct: 49 DIILMDLVMDVMDGIEATQK----IMADWPQAKIIIVTSFLDDEKVYPAMEAGASSYLLK 104 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 T A I + + ++I +I QA ELT RE++ Sbjct: 105 TSSAAEIAQAIRSTYQGHKVIEPAVTEKIIEHRLDQA--------RPKPHDELTNRELDV 156 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L I +G ++ IA L I+ TV ++++I K + R+ A YAV +++ Sbjct: 157 LRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDRTQAAIYAVHHHL 208 >gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 219 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 22/219 (10%) Query: 33 LARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 + +++ +D + AL E VG + + DL + D +V D + Sbjct: 1 MIKVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPD-VVLMDMRMPI 59 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143 + +A ++ + Q + V T ++ A + Y + + Sbjct: 60 MDGVAATQ-----EIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + + + + + LL +Q+ N H +LT RE E L I+ G Sbjct: 115 IRAVEKGYTQLGPGIVKK--LLVQFQSTPNHTPPAPTHLA---DLTPREKEVLRLIAAGA 169 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + EIA L IS TV N++ +I+ + + R+ A A Sbjct: 170 NNREIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208 >gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 261 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 3/170 (1%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 +V D + +A + K L + L F + + + Sbjct: 91 VVLMDIRMPVEDGIAATRKIVGDTALAQTRVLVLTTFDIDEYVYDALQAGASGFMLKDAE 150 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 I + + +I L+ + ++ ++ G +LT RE E L + Sbjct: 151 PDDIVRAVRTVAAGDALIQPSITRR--LIETFVSSRPRTS-AAAGGLVDLTDREREILRF 207 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G +++EIA L IS TV ++A IM K R+ + A + +V Sbjct: 208 VARGMSNEEIADDLVISPATVKTHLARIMGKLDAHDRAQLVVAAYESGLV 257 >gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans] Length = 210 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + ++R +G L Y H+ K+ L+ RE + L W+ GKT E+AVIL I Sbjct: 115 MEKNRSEIVGFLVNLHQKTLNLYSQHYQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ ++M+K + A+ ++ Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208 >gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 282 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 19/184 (10%) Query: 80 SDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITP------PAGMDNRY 130 P ++ + + + D Y + + PV +T G D + Sbjct: 98 HHLPALVISDIMMPQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDA-F 156 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKD- 183 S FD + + L + + L + A + + + +H Sbjct: 157 LSKPFDPDELEAIVRNLLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSP 216 Query: 184 --FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + T RE L +S+G + EIA L S V Y++ + KT T +R+ + +A+ Sbjct: 217 IKLDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFAL 276 Query: 242 RNNI 245 ++ + Sbjct: 277 QHGL 280 >gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 229 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 17/180 (9%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTL-----PENITPPAGMDNRYCSLT 134 P ++ + + + D Y + + P PV + I + Y S Sbjct: 48 PDLVITDIMMPQVDGYQFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKP 107 Query: 135 FDVARIRIGLMLLFPKGRIILRDR---------LWEIGLLAAYQANMFKSYDVHWGKDFE 185 FD + + L + ++ E+ + A + Sbjct: 108 FDTDELVAIVENLLERRATTAQETAGTADLGNIEKELTAIREMLAQRGNISQTPPPIRID 167 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + + Sbjct: 168 FTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 227 >gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 231 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 17/180 (9%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLT 134 P ++ + + + D Y + + PV + I + Y S Sbjct: 50 PELVISDIMMPQVDGYQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKP 109 Query: 135 FDVARIRIGLMLLFPKGRIILRD-----RLWEIGL----LAAYQANMFKSYDVHWGKDFE 185 FD + + L + R L+ RL EI L + Sbjct: 110 FDPEELEALIKSLIERRRQSLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKID 169 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ + Sbjct: 170 LTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 229 >gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 209 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y T I + +I ++ +Q+ K +D +LT R Sbjct: 101 YILKTSTANEIANAIKKAASGENVIEPK--VASKMMTNFQSQKKKLHD-------DLTER 151 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L I EG T+ EI L I TV ++++I+ K R+ A Y RN ++ Sbjct: 152 EREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSNILSKLDVHDRTQAAVYVHRNKLL 208 >gi|257792552|ref|YP_003183158.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325832688|ref|ZP_08165451.1| prevent-host-death family protein [Eggerthella sp. HGA1] gi|257476449|gb|ACV56769.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325485827|gb|EGC88288.1| prevent-host-death family protein [Eggerthella sp. HGA1] Length = 228 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 5/178 (2%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + +V D + + + + L+ L F A + + Sbjct: 48 RLHPDVVLMDIRMPRMNGIEATRAIRDDAALENVHVLILTTFDLDEYVYDALAAGASGFL 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TG 188 + I + ++ +I L+ + A S L T Sbjct: 108 LKDAEPDEIASAVRVVAQGDALIEPSITRR--LIETFVAARPASLGGAAAVAAGLRTLTD 165 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L ++ G T+DEI L IS TV ++A IM K R+ + A +V Sbjct: 166 REREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223 >gi|302550833|ref|ZP_07303175.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468451|gb|EFL31544.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 215 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V +G + P ++ L E LA+ Sbjct: 82 HADVLEAVKSGATGYLLKSASTEELRDAVRSTAVGDPVFTPGLAGLV---LGEYRRLASE 138 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D K LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 139 PA---PAPDADEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 196 QLHNRVELVRYAIERGL 212 >gi|291440146|ref|ZP_06579536.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343041|gb|EFE69997.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 201 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 5/137 (3%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA+ Sbjct: 67 HADVLEAVKSGATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 123 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D K LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 124 PAGPAQGDD--GSKAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 181 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 182 QLHNRVELVRYAIERGL 198 >gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 226 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 1/140 (0%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F I + + + + ++ I+ + Sbjct: 80 PRVLILTTFDLDEYVIEAVRAGASGFLLKDAPPEDLVSAIRIVAAGDAIVAPSVTRRLLD 139 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A + + G + LT RE E L ++ G ++ EIA L +S TV ++ ++ Sbjct: 140 KFASRLPSMRQTPPPPGLET-LTEREREVLKHVARGLSNAEIARELVVSETTVKTHVGNV 198 Query: 225 MRKTATKTRSGAIAYAVRNN 244 + K + R A+ YA Sbjct: 199 LAKLGLRDRVQAVVYAYETG 218 >gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 240 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A++ K D+ +L+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ Sbjct: 162 MASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKR 221 Query: 228 TATKTRSGAIAYAVRNNIV 246 ++ +YA ++ Sbjct: 222 FNAPNKTQIASYAAAIGLI 240 >gi|307302498|ref|ZP_07582255.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307316172|ref|ZP_07595616.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|86278997|gb|ABC88593.1| N-acyl homoserine lactone receptor [Sinorhizobium meliloti] gi|306898012|gb|EFN28754.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903168|gb|EFN33758.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 83/239 (34%), Gaps = 24/239 (10%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 LA + + L + G + +VR E L +++ WP + Sbjct: 8 QFLALLEEMKTREEILPEFERLLDRCGFDFYGIVRQPKPHENPLRLLLAGRWPEGWPQIY 67 Query: 91 A-------------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 L + + E++ A + F V Sbjct: 68 IRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPV 127 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF----------KSYDVHWGKDFELT 187 R GLM G ++ E+ L A +F ++ + ++T Sbjct: 128 -HGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMT 186 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++++G TS++I +L IS +TV+ Y+ I K K R +A A R ++ Sbjct: 187 RREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 245 >gi|90421195|ref|ZP_01229096.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] gi|90334572|gb|EAS48355.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] Length = 299 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 40/80 (50%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL Q + ++ RE E L W+S GK++ +IA IL +S TVN ++ + Sbjct: 215 LLRVSQVASDATLIASLNAKLPISPREAEVLLWLSRGKSNQDIADILKLSVRTVNKHLET 274 Query: 224 IMRKTATKTRSGAIAYAVRN 243 I RK + RS A A A+ Sbjct: 275 IFRKLGVENRSAATAIAMEQ 294 >gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter xylosoxidans A8] Length = 83 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + L+ R+ CL W + GKTS E A ILG+S +TVN ++ + K Sbjct: 1 MGSALNPSSSPAQAIKPLSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKL 60 Query: 229 ATKTRSGAIAYAVRNNIV 246 + R A+ A+R ++ Sbjct: 61 GVRGRRAAVVAALRLGLI 78 >gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 195 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 19/185 (10%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 LLV L + Q D + V +A+S +K ++ + + Sbjct: 30 LLVDLSLSEGQGADLLELVQLRMPNVLSIAISSSEKDDIAIE-----------AFEKGVV 78 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + S + V + G + P I+ + L +I ++ + + Sbjct: 79 GYLLKNSWFGSYSQAVLEVANGGASISP---IVAKKILPKI-----FKYSALEEAPFENK 130 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K +LT RE E L I++GK + EI + IS TV+ ++ +I RK +TR+ A+ YAV Sbjct: 131 KLEKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAV 190 Query: 242 RNNIV 246 I+ Sbjct: 191 LKGII 195 >gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 224 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 16/134 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L R +T + G L PK L R+ + L Sbjct: 91 VFPALEAGAFSYLLKTARAEEITAAIRSAHRGESTLEPKVSARLLKRVRKPQPL------ 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +LT RE E L + + KT+ +IA IL I TV ++++I+ K + Sbjct: 145 ----------PHEDLTIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLE 194 Query: 232 TRSGAIAYAVRNNI 245 R+ A YAV++ + Sbjct: 195 DRTQAAVYAVKHGL 208 >gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617] Length = 240 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A++ K D+ +L+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ Sbjct: 162 MASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKR 221 Query: 228 TATKTRSGAIAYAVRNNIV 246 ++ +YA ++ Sbjct: 222 FNAPNKTQIASYAAAIGLI 240 >gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 213 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQVLSRQEQL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 +A++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 TLAQLVGAIRTVAEGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|148654958|ref|YP_001275163.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148567068|gb|ABQ89213.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 204 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 37/75 (49%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + V LT RE + L +S+G ++ +IA L IS +TV +++S+ K Sbjct: 128 HRRPLSVAEPVGEPLTARERDVLELVSQGLSNKQIAQKLQISEHTVKFHLSSLFAKLGVS 187 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ R I+ Sbjct: 188 SRTEAVNRGARQGII 202 >gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L + A Sbjct: 94 VYEALRAGASGFLLKDASADELAHAVRVVAAGDALLAPNITKRLIGEFSRVSAAA----- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + +LT RE E LT I++G ++ EIA L ++ TV +++ I+ K + Sbjct: 149 ---PRGPLRDRVGDLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLR 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 206 DRTQAAVFAYETGLV 220 >gi|291442172|ref|ZP_06581562.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345067|gb|EFE72023.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKNAPPADLIAAVRVVASGDALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+A + + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 137 R--LIADFAKQRPAVRGKPALRLKGLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220 >gi|269125106|ref|YP_003298476.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310064|gb|ACY96438.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 954 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 R++ L L RL E A + + + + LT RE+E Sbjct: 845 DLAARRLQEAEALAGRLRAAPLARRLEE----TARRGRLNGTAPSAARSPYGLTPRELEV 900 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +++G+T+ EIA +L IS TV+ ++++I+ K TR A A A R + Sbjct: 901 LRLVAQGRTNREIAEVLFISAKTVSVHVSNILAKLQVPTRGEAAATAHRLGL 952 >gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 213 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + P + F + Y Sbjct: 49 DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|327439935|dbj|BAK16300.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 FH A N + + +G L + L E L ++ M Sbjct: 97 FHLNIPRKYIIAENQNSLLVVPITFNHVVVGYFLGTHFHKNFDPQLLMEANLFSSQVGEM 156 Query: 173 FKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ + + +L+ RE E + ++ G +S +IA +L IS T+ YI S+M KT T Sbjct: 157 LFNHPCYVENNEIKLSKREFEVMKCVAFGYSSKQIAHLLEISETTIKQYIKSVMSKTNTS 216 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+A+ + I+ Sbjct: 217 NRTHAVAFLFQKRIL 231 >gi|296877022|ref|ZP_06901064.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296431966|gb|EFH17771.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 210 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + + +S H +LT RE + L +++G + IA L IS TV ++++ Sbjct: 123 AIETEVSQKVESRKNHAELHDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSN 182 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K R+ A+ YA R+++V Sbjct: 183 ILSKLEVSDRTQAVVYAFRHHLV 205 >gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus nasoniae] Length = 243 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 18/192 (9%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITP 122 D I+ SD +LV + V+ + P + + P Sbjct: 41 TDDMIIISDLSDELVNNYLNQKTQNIDPVIIKALNQLAPFSWDENIKINSIWPVKKVFEP 100 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII------LRDRLWEIGLLAAYQANMFKS- 175 ++ + + L+ L+ +I ++ E+ L + M S Sbjct: 101 MKMLNISGYAFVLHDHLNNLALLSLYMDKFLIKDIEFFIKSNKGELQGLLIHTHEMLLSL 160 Query: 176 -YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + + + RE E L W S GKT EI IL IS TV +I ++++K Sbjct: 161 YQNENTTEKIIFSPRESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAK 220 Query: 235 GAIAYAVRNNIV 246 AI+ +V+ N++ Sbjct: 221 HAISLSVKLNLI 232 >gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM 12163] Length = 242 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A++ K D+ +L+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ Sbjct: 164 MASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKR 223 Query: 228 TATKTRSGAIAYAVRNNIV 246 ++ +YA ++ Sbjct: 224 FNAPNKTQIASYAAAIGLI 242 >gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 244 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 G ++ + + + LT RE E L ++EG +S EIA L IS TV + Sbjct: 158 PGAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFISVKTVERHR 217 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A+I+ K K R YA+R ++ Sbjct: 218 ANILAKLGMKDRLELTRYAIRTGLI 242 >gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 89 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT E+E L W SEGKT EI+ I S+ TV ++ +I K R A+ AVR Sbjct: 28 PLTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNRVQAMNEAVRQG 87 Query: 245 I 245 + Sbjct: 88 L 88 >gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 224 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 11/210 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 +D + AL G + D + +L + D L + Sbjct: 11 IDDHTLLRRGLVALLSQYGDLCVVGEAGDAAEALRLLPQLRPDVI-LLDNHLPGVRGVDA 69 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGLMLLFPKGRII 154 L+ ++ + T+ E+ Y T D + + ++ Sbjct: 70 IAGLREASQGSRVIMLTVSEDGEDLGAALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVV 129 Query: 155 LRDRLWEIGLLAAYQANMFKSYDV----HWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + + L+AA+Q+ D +L+ RE E L I+ G ++ EIA L Sbjct: 130 SPEMMGK--LVAAFQSQGAPEPDPGPMPQEDPAPQLSPREQEVLREIARGASNKEIARQL 187 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240 I+ TV ++ I+RK +R A YA Sbjct: 188 SIAETTVKIHVQHILRKLGLTSRVQAAVYA 217 >gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L E + A + + LT RE E L I++G+ + EIA L ++ TV Sbjct: 130 LLEPEVATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLAEKTVK 189 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245 ++++I+ K R+ A +AVR+ I Sbjct: 190 THVSNILMKLGVADRTQAALWAVRHGI 216 >gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 191 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ R + + + + A + + EL+ RE+E L I+ G T+ E Sbjct: 83 LVETVRRGVQGESIMHPRVAARVVNEIRATKQASPDPFSELSERELEVLRLIARGLTNAE 142 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 IA L IS TV ++++I+ K R+ A +A Sbjct: 143 IAESLFISGKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181 >gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 10/178 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 + + + + PF + +D ++ +QR + F I P G Sbjct: 76 DPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMM-MDAQRFGLEEGYIFPIHGRGGLL 134 Query: 131 CSLTFDVARIRIG--LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 ++T + + ++LF RL EI + + D LT Sbjct: 135 ANMTIGGRPVELTPIEIMLFDTVAKCAFWRLAEIN-------GEDELLSMVQKVDVRLTR 187 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ EG TS+E++ +L IS +TV+ Y+ + K K R +A A R ++ Sbjct: 188 RELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 245 >gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 173 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKD 183 GM+ D A R + + + +L + +I +A + + K Sbjct: 51 GMEKGAYFPVHDAAGGRGAMSISGSRNFTML--EMAKILFIATLIYDRLSQLTLNEKHKP 108 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 T E++CL + G+ S EIA +L +S N VNN+I S+++K TR+ A+ A+R Sbjct: 109 IAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRL 168 Query: 244 NIV 246 NI+ Sbjct: 169 NII 171 >gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 319 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ I K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310 >gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900] Length = 319 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ I K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310 >gi|261419001|ref|YP_003252683.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765817|ref|YP_004131318.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375458|gb|ACX78201.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110683|gb|ADU93175.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 200 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 +Y+ D+ + LT E+ L I+ KT+ EI L IS+ TV ++++SI+R Sbjct: 120 SYRGVKSFPTDLAFHDGSPLTEMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILR 179 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K K+R+GA+ A R ++ Sbjct: 180 KLHVKSRAGAVGKAFRLGLL 199 >gi|317488844|ref|ZP_07947374.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911918|gb|EFV33497.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 228 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 5/178 (2%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + +V D + + + + L+ L F A + + Sbjct: 48 RLHPDVVLMDIRMPRMNGIEATRAIRDDAALENVHVLILTTFDLDEYVYDALAAGASGFL 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TG 188 + I + ++ +I L+ + A S L T Sbjct: 108 LKDAEPDEIASAVRVVAQGDALIEPSITRR--LIETFVAARPASLGGAAAVAAGLRTLTD 165 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L ++ G T+DEI L IS TV ++A IM K R+ + A +V Sbjct: 166 REREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223 >gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 226 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + F+ + + ++ ++ ++ + DV L Sbjct: 101 DGLLLKQFNSEELIRSIHMVLEGKALLDPSITNKVLDRVKNGQPKPQPKDVAL-----LN 155 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +E L I+EGKT+ EIA IL +S NT+ NY++ I+ K R+ A AYAVRNN+ Sbjct: 156 PQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVRNNL 213 >gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] Length = 245 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--ANMFKSYDVHWGKDF 184 D+ Y + ++ + +I ++L+ + +L YQ N K + Sbjct: 132 DSIYFDESIEINKEKIQMLLILTHDK-----------MLGLYQKNNNENKELGRSAAERE 180 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + RE E L W S GKT EIA+ILGI R+TV +I +++RK AI + Sbjct: 181 IFSPRENEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELK 240 Query: 245 IV 246 ++ Sbjct: 241 LI 242 >gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 151 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R + LA A+ + +LT RE++ L +S+GK++ +I L +S Sbjct: 59 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 118 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + RK + R+ A+A+ R +V Sbjct: 119 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 150 >gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426] gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 391 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 41/67 (61%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ L+ RE+E L +++G ++ E A L +S TV +YI+S +RK K R+ A+A Sbjct: 324 EGRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383 Query: 240 AVRNNIV 246 A+R ++ Sbjct: 384 ALRLGLI 390 >gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 500 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++EG ++ E A L +S TV +Y+++I++K K R+ AI A+R+ Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 245 IV 246 I+ Sbjct: 499 II 500 >gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. ORS278] Length = 133 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVI 209 R++ ++ ++ ++ ++ + H F+LT RE + L ++EG ++ EIA Sbjct: 35 RLVAPGESADVAVIRPGGSDATENGETHGRDSDAFQLTARERDVLALMAEGCSNKEIARS 94 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS +T ++ S++ K R+ A+A+A R I+ Sbjct: 95 LGISVHTAKFHVGSLLDKLDATGRTDAVAHAARRGII 131 >gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 213 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + ++ LT RE E L +++GK++ E+ L IS +TV +I +++RK Sbjct: 136 AAIVLRTVSGEQESTATLTDREHEVLKLLADGKSNAEVGRALFISESTVKFHIRNVIRKL 195 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+ A + ++ Sbjct: 196 GVTKRTDAVYVASKRGLI 213 >gi|291486493|dbj|BAI87568.1| hypothetical protein BSNT_05953 [Bacillus subtilis subsp. natto BEST195] Length = 218 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214 + ++ A + F++ ++ T RE+E L ++ G +++IA L +S Sbjct: 126 EAIFRTVTAAKIISETFRAKQQPHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV ++ I++K + R+ A+ +A+RN IV Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L I +G+++ EIA L IS TV +I +++ K R+ A A++ Sbjct: 149 ELTARELDVLRLIVQGRSNREIAADLHISEATVKTHINNLLSKLGVSDRTQAATTALQRG 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 218 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 8/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR--- 129 +V P ++ + + D + V T +++ A + N Sbjct: 41 HLVKQLQPDVVLMDIRMPIIDGVAATKTIQTHFPATKVLVLTTFDDDLYIKAALQNGAMG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + + + + + + + LL + ELT R Sbjct: 101 YLLKDTPSEELAVAIRAVDKGFSQLSPEIVKK--LLTQFPTTAPDPVKSIPPSLVELTPR 158 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E + L I+ G ++ EIA L IS TV N++ +I+ + + R+ A A Sbjct: 159 EKQVLRLIANGASNREIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAILA 209 >gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 500 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++EG ++ E A L +S TV +Y+++I++K K R+ AI A+R+ Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 245 IV 246 I+ Sbjct: 499 II 500 >gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis] Length = 248 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 10/178 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 + + + + PF + +D ++ +QR + F I P G Sbjct: 78 DPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMM-MDAQRFGLEEGYIFPIHGRGGLL 136 Query: 131 CSLTFDVARIRIG--LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 ++T + + ++LF RL EI + + D LT Sbjct: 137 ANMTIGGRSVELTPIEIMLFDTVAKCAFWRLAEIN-------GEDELLSMVQKVDVRLTR 189 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ EG TS+E++ +L IS +TV+ Y+ + K K R +A A R ++ Sbjct: 190 RELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 247 >gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] Length = 248 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ E +AA Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166 Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S ELT RE E L I+ G ++ EIA L IS TV ++A I Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLTTVKTHVAHI 226 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N++V Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248 >gi|307711412|ref|ZP_07647828.1| response regulator [Streptococcus mitis SK321] gi|307616785|gb|EFN95969.1| response regulator [Streptococcus mitis SK321] Length = 210 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197 R ++ ++ R G LA Q K + H +LT RE + L I Sbjct: 97 ARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLI 156 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G + IA L IS TV ++++I+ K R+ A Y+ ++++V Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYSFQHHLV 205 >gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 228 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELT 187 YC + + + + + EI + ++ ++ + LT Sbjct: 105 GYCLKGIAAETLVLAIRSVAAGASWWDKAATTEIRSAITNNESKFVPKSEL----ENPLT 160 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L ++ GK++ EIA IL I+ TV ++ +I++K + R+ A A++ +V Sbjct: 161 KREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKGLV 219 >gi|289705344|ref|ZP_06501740.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557859|gb|EFD51154.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 230 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 13/170 (7%) Query: 87 VRCMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR + + +L+RP + F + + + Sbjct: 62 VRMPEMDGIEATRALLRRPDAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAA 121 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTW 196 + + +I L + A +S V + E LT RE E L Sbjct: 122 IRTVHRGDAVIAPSTTRR---LLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVL 178 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + EIA L +S TV ++ ++ K + R A+ A R +V Sbjct: 179 MAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228 >gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426] gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 500 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++EG ++ E A L +S TV +Y+++I++K K R+ AI A+R+ Sbjct: 439 HLSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 245 IV 246 I+ Sbjct: 499 II 500 >gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 278 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D G LT RE E L ++EG+++ +IA L +S TV N++ASI+ K + R+ A Sbjct: 206 DKAPGIVAPLTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQA 265 Query: 237 IAYAVRNN 244 + A+R Sbjct: 266 VLVALRRG 273 >gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 223 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ L E LA+ Sbjct: 90 HADVLEAVKSGATGYLLKSASTEELIDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 146 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 147 PA---PAAGADEPKAPQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 203 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 204 QLHNRVELVRYAIERGL 220 >gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 46/93 (49%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +L + + E+ Y +D +L+ RE++ L ++ G ++ ++A L IS Sbjct: 113 LLHEAIVEVAAGGTYFPASIARTMSAHTEDQDLSARELQVLHLVAAGSSNKDVADKLSIS 172 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ +IM+K + R+ + A+R IV Sbjct: 173 LPTVKMHMTNIMKKLSVYDRTQLVIAAIRKGIV 205 >gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114] Length = 230 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 20/203 (9%) Query: 51 ALTEYVGASH---FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 L+E H +L K D + ++P + + +Y V+ Sbjct: 28 CLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDPVVDYSKS 87 Query: 108 LFCP----VFHTLPENITPPAGMDNR-------YCSLTFDVARIRIGLMLLFPKGRIILR 156 P VF P + S A G++ + I Sbjct: 88 HHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFAHSDKDIYT 147 Query: 157 DRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 D L+ +L + N K D LT RE ECL W SEGK++ +I+ IL Sbjct: 148 DSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGKSTWDISKIL 207 Query: 211 GISRNTVNNYIASIMRKTATKTR 233 G S TV ++ + K T R Sbjct: 208 GCSERTVTFHLTNTQMKLNTTNR 230 >gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor owensensis OL] gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor owensensis OL] Length = 213 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127 F E++ +V D +R + E + +N+ R + + T E + Sbjct: 43 FLEKRHADVVLMD-----IRMPVMDEIEGTFNIKVRFPSVRVIILTTFCEEDYIKKSLSF 97 Query: 128 --NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 + Y + D I + + +I ++ +A F+++ ++ K Sbjct: 98 GADGYILKSSDAQHIIDTIHAVLDGKVVIDKET---ALFVANSLKKDFQNHSINENKLKN 154 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E I++G ++ +I+ IL IS TV NYI+SI+ K K R+ Y Sbjct: 155 LSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKNRTQIAVY 208 >gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 208 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 8/88 (9%) Query: 158 RLWEIGLLAA-YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 ++E L+ QA +S D LT RE E L ++EG T+ EIA L + T Sbjct: 126 AIFEPALMQRILQAQTMRSSDA-------LTEREGEVLKLLAEGLTNAEIAARLSVGEET 178 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244 V ++ASI+RK R+ A YA+R+ Sbjct: 179 VKTHVASILRKLGLAHRTQAAIYALRHG 206 >gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 215 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 20/183 (10%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127 F E+ +V D +R + + +N+ + + + T E + Sbjct: 43 FLEKGNADVVLMD-----IRMPVMDGIEGTFNIKTKFPNVKVIILTTFCEEDYIKKSLSF 97 Query: 128 --NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184 + Y + D I + + + R+ +A + +N K + + Sbjct: 98 GADGYILKSSDAQHIIDTIYAVLDGKVVFDRE-------IALFISNTLKKEASSFSGNVN 150 Query: 185 ----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE++ + I++G ++ EIA +L IS TV NYI+SI++K + R+ Y Sbjct: 151 VLKNELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIYY 210 Query: 241 VRN 243 +N Sbjct: 211 YKN 213 >gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 267 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 31/54 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE E L W++ GKT+ EI IL IS TV N++ + +K R+ A+ Sbjct: 206 LTEREAEILKWVALGKTNPEIGSILEISAFTVKNHMQRVFKKLDVSNRAQAVGK 259 >gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 15/209 (7%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111 L + +G H L Q + S++P + + + K + P Sbjct: 28 LVQDLGMEHLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAARLSHGQTTP 87 Query: 112 VFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 V T G+ + + D+ + + P G+I + + L+E Sbjct: 88 VLWTDELYCEAPQFREAACQHGLRHGWTQSLHDLQHNESQVSVARPAGQIAINE-LYEKA 146 Query: 164 LLAAYQANMFKSY------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 + + S D +++ RE+E L W + GKT+ ++A IL +S++TV Sbjct: 147 ASVQWLCHTLHSVLCEHHLDALCPPQPKMSERELEVLRWSAAGKTAADVASILSLSQSTV 206 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N +I S++ KT ++GAIA A + Sbjct: 207 NFHIRSVITKTNASNKAGAIAIAALRGWI 235 >gi|218247165|ref|YP_002372536.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060237|ref|YP_003138125.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167643|gb|ACK66380.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256590403|gb|ACV01290.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 226 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 4/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + L V G + P I+ + + L + Q++ Sbjct: 95 VLGAFRAGADSYCLKNIKIELLIEAVKTTYQGNTWIDPVIAPIILSQ-AKANLSHSCQSS 153 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + K LT RE+E L I +G ++ +I+ L I+ TV ++ +I+ K Sbjct: 154 SLTEN---FLKHTPLTERELEVLQLIVDGYSNAQISEQLYITVGTVKTHVRNILNKLCAD 210 Query: 232 TRSGAIAYAVRNNIV 246 R+ A A+R+ +V Sbjct: 211 DRTQAAVRALRSGLV 225 >gi|308176141|ref|YP_003915547.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743604|emb|CBT74576.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 3/183 (1%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 D ++ +D +V D ++ ++ ++ K +V P+ L F + + Sbjct: 40 AAVDYCKDNHVD-VVLMDLQMPIMDGVSATKIIK--SVQDSPSVLAITAFSSDEYLVPVL 96 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + Y + I + + I ++ D Sbjct: 97 TAGASGYLVKDSEPDEIIRAIHAVHQGTAAISPSVSSDLVSAVREAYRDNSGDIQELVYD 156 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +T RE E L +++G + EI+ L IS TV ++A I K + R A+ A R Sbjct: 157 LGITNREFEILKLLAKGLNNPEISKTLAISETTVKTHMAKIFVKLDVRDRVQALVAATRM 216 Query: 244 NIV 246 ++ Sbjct: 217 GLI 219 >gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 210 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 12/170 (7%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFD 136 P +V + L D + ++ ++ + + E I + + YC Sbjct: 47 PDLIVMDIGLPRLDGIAATQQIKEKLPDVRVVMLTSHTAETEIIAALSSGADAYCIKGAS 106 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 V R+ + + + + N+ V +L+ RE E L Sbjct: 107 VERLLAAIAAAAEGATYL------DPQIARTVIENLKPPTPVSTASIGQLSQRESEVLKL 160 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EG ++ EIA L +S NT+ ++ IM K A R A A+R +V Sbjct: 161 MVEGYSNPEIAAALYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 210 >gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 550 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------- 183 + F V R G++ + K ++ + LAA A M S H G D Sbjct: 425 VPFFVGDGRYGVLAVHIKKEREAKEAEVYMTALAAIGAMMI-SGKSHGGNDGTVNIDMLS 483 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + +G ++ EI+ L IS +TV N+I +I +K RS IA + Sbjct: 484 EQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 543 Query: 244 N 244 N Sbjct: 544 N 544 >gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 118 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL G A + D LT RE+E L ++EG ++ IA LGIS +T Sbjct: 30 RLARPGEAADAVVTLPPGNGP--APDPGLTPREIEVLGLLAEGASNKAIARRLGISVHTA 87 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ S++ K R+ A+A+A R ++ Sbjct: 88 KFHVGSLLDKLDATGRTDAVAHAARRGVI 116 >gi|170726344|ref|YP_001760370.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169811691|gb|ACA86275.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 205 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 ++P + ++ + L + LL ++ +S + ELT R+ E L W+ GK++ EI Sbjct: 91 MYPAIQYVVINELLKEVLLNKTTSDEPQSNEGECISTIELTQRQHEILHWVKLGKSNWEI 150 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + IL IS +TV ++ I ++ R A+ Sbjct: 151 STILSISIDTVKFHLRGIYKRLGVSNRVQAV 181 >gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 198 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 R + LA A+ + +LT RE++ L +S+GK++ +I L +S Sbjct: 106 ASRPELVAALAHTLASTAVPTPRTPADPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + RK + R+ A+A+ R +V Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197 >gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 234 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 21/225 (9%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93 RM + T+S + M EY+G S L + Q I+ +++P + Sbjct: 19 QRMFEIAVTMSQALGM----EYLGLSLHLHIAAQNPQV-----ILYNNYPREWNEHYRQG 69 Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYCSLTFDVARIRIGLM 145 ++ + P + P G+ + + FD L Sbjct: 70 NFLTIDPIVSMCHKTLKPQIWSDELYCEVPHFRESAMRFGITHGWTQSVFDQRHNESQLS 129 Query: 146 LLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + K I +++ + L A + + + L+ RE+E L W + GK Sbjct: 130 VCRGKRPIKVKEVYDKASQVMWLCNTLHAALSEHHLEKLSPTPNLSERELEVLKWSAGGK 189 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ ++A IL +S +TVN +I S++ KT ++GAIA A ++ Sbjct: 190 TAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVAFLRGLL 234 >gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] Length = 235 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225 Query: 246 V 246 + Sbjct: 226 I 226 >gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 232 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 18/135 (13%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + L V +G + + P L ++ E Sbjct: 94 VMGAVRAGAIGFLLKNAEADDLRNAVKAAAVGQIHVSPAAISRLMGQVREPS-------- 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +LT RE E LT ++ GK + EIA L I + TV Y++ I+ K Sbjct: 146 ----------GPEQLTERETEVLTMLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVH 195 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A YAV++ +V Sbjct: 196 SRTQAAVYAVQSGLV 210 >gi|238064361|ref|ZP_04609070.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886172|gb|EEP75000.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 2/156 (1%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 +A ++ L L F + + + A + + ++ Sbjct: 63 GLAATQAITADEALAGVRVLILTTFEADEYVFQALRSGASGFLGKGVEPADLLDAIRIVA 122 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 ++ L+A Y A++ + + LT RE E LT ++ G +++ IA Sbjct: 123 GGEALLSPKATQ--ALIARYLASLKPATGAVPTELAALTEREREVLTLVAAGLSNNAIAE 180 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L +S T ++ IM K + R+ + A + Sbjct: 181 RLYVSPLTAKTHVNRIMAKLGARDRAQLVVVAYQTG 216 >gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans] Length = 210 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + ++RL + L Y H K+ L+ RE + L W+ GKT E+AVIL I Sbjct: 115 MEKNRLKIVSFLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ ++M+K + A+ ++ Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208 >gi|297155663|gb|ADI05375.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 22/170 (12%) Query: 89 CMALSEKDKYYNVLQRPTELFCPV------------FHTLPENITPPAGMDNRYCSLTFD 136 + + D E C V F L + D R L Sbjct: 55 DIRMPGMDGIEAARIICAETACRVIMLTTFGQDGYLFDALRAGASGFLLKDVRRDDLVHA 114 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 V + G LL P L+AA+ + D LT RE E L Sbjct: 115 VRMVAAGDSLLAPS---------VTRTLIAAFTSGAVVPPPRTERLDV-LTARERETLRL 164 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++ EIA L +S +TV ++++I+ K + R A+ A +V Sbjct: 165 LGCGLSNAEIAAALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGMV 214 >gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 214 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + + + +LT REV Sbjct: 99 LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR I Sbjct: 157 DVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 210 >gi|171915509|ref|ZP_02930979.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 209 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 23/184 (12%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 L R +D + ++ + + L D +L VF + Sbjct: 45 LYREHQPDVVTMDFKMPGQDGAEITKQLRLEFPDARVVLLT--------VFEGEEDIWRA 96 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + Y S + +V + + +F + + LAA QA Sbjct: 97 VQAGASGYVSKSAEVEELLEVVRRIFAGEQYFSPNV---AAKLAARQAR----------- 142 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE++ L I G ++ EIA L +S TV +I++ + K R+ A AV+ Sbjct: 143 -NALTPRELQVLRHIVAGYSNKEIAAKLHMSEATVKLHISNTLDKLNVADRTQAAIEAVK 201 Query: 243 NNIV 246 IV Sbjct: 202 RGIV 205 >gi|158334970|ref|YP_001516142.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305211|gb|ABW26828.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 77/201 (38%), Gaps = 20/201 (9%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110 +Y+ + + +E ++ P ++ + + E D Y V P + Sbjct: 27 DYLELRGYEVTTAKNGREAL--RVLEKSIPNLIICDVMMPEMDGYAFVKRVRDNPQTSYL 84 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + +T + Y F+ + + + +++ + + Sbjct: 85 PVLFLSAKGQIQDRVTGLNTGADVYMIKPFEPDELVAQIEASLKQASRMMQKQANSLEGE 144 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + Q D +LT E + + +++G ++ EIA L +S+ TV +++++++ Sbjct: 145 LSVQVPF----------DVDLTPTETKVIQLVAKGMSNREIADDLSVSQRTVESHVSNML 194 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 KT R+ +A+ +V Sbjct: 195 GKTGLNNRTELARWAIEQRMV 215 >gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase [Acinetobacter calcoaceticus PHEA-2] Length = 319 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ I K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310 >gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] Length = 238 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184 + R R+G + + R + + E G + A + + Sbjct: 114 ARAGLIVPLPDRRGRVGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSP 173 Query: 185 ------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R+ A+ Sbjct: 174 ALAGLAKLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232 >gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505] Length = 240 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 19/171 (11%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFD 136 VR ++ + + Q + F L + D R L Sbjct: 75 VRMPGMNGIEATERIAQECPSTRVLILTTFDLDEYAFAGLRAGASGFLLKDTRPTELAEA 134 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + G ++ P+ + R+ E+ G L + +A S D LT RE E L Sbjct: 135 IRTVASGEAVVSPR----ITQRMLEMFAGSLPSSEAPAQSSSDPRID---SLTPREKEIL 187 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S+G ++ EIA L +S TV ++ +++ K + R A+ A + Sbjct: 188 VLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 238 >gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653] gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653] Length = 235 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+CL W + GKT EIA IL I+R TV Y+ + K R+ A+A A+ I Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225 Query: 246 V 246 + Sbjct: 226 I 226 >gi|312138083|ref|YP_004005419.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|325675013|ref|ZP_08154700.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|311887422|emb|CBH46734.1| LuxR family two component system response regulator [Rhodococcus equi 103S] gi|325554599|gb|EGD24274.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 220 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 11/176 (6%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-----VFHTLPENITPPAGMDNRYCS 132 V+S P ++ + + + EL P + +++ A + Sbjct: 48 VASLQPHVVLMDLKMRRTGG-LEATRSLMELESPPKVIAMTAMDVDDLVVQAVAAGAHSF 106 Query: 133 LTFDVARI--RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L+ D A + + ++ + + L I + A + LT RE Sbjct: 107 LSKDEAPLTFHQSVRVVASGNTLFSPEALRRIVSESEGTAGSTPVVRPDLSR---LTERE 163 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E LT ++EG+++ +I L + TV +++++I K + R A A R +V Sbjct: 164 REVLTVLAEGESNADIGRRLFLGETTVKSHVSAIFEKLGVRNRVEAALQAYRAGLV 219 >gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 231 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G + L R R++ + +A F + +ELT RE E L W+++G + Sbjct: 109 GRVELLSAIRSANRNQPYVDPQVAGKLLTSFSRRKEENDQLYELTPREKEILYWLAQGLS 168 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + E+A + +S TV N+++ +++K + R+ A A R Sbjct: 169 NSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWRIG 210 >gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 209 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 85/224 (37%), Gaps = 30/224 (13%) Query: 32 LLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 + R++ +D + AL + +G + DL++ L +V D Sbjct: 4 MTIRILLVDDHAILREGLAALLNGVDGMQVIGQAGDGATAIDLYRN-LLPDVVICD---- 58 Query: 86 LVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 +R + + + + + + T E + Y + A++ Sbjct: 59 -LRMVPMDGTEVTSTIRAEFPAARVILLTTYDTDEEVFRGLRAGASSYLLKDVEPAQLID 117 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + ++ + I +AA A S LT R++E L ++EG++ Sbjct: 118 TVHAVYAGRKAIDPS-------IAAKLAEHVASD--------ALTARQLEVLRSLAEGRS 162 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L IS TV +I +I++K + R+ A+ ++ ++ Sbjct: 163 NIEIANTLYISEGTVKAHIKAILQKLGARDRTQAVTIGIKRGLI 206 >gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] Length = 215 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 21/201 (10%) Query: 55 YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFC 110 + +F +V ++ ++ + + D+V R + + +N+ + + Sbjct: 22 ILELENFEVVSLCTNAKEAIEFLEKGN--ADVVLMDIRMPVMDGIEGTFNIKTKFPNVKV 79 Query: 111 PVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + T E + + Y + D I + + + R+ +A Sbjct: 80 IILTTFCEEDYIKKSLSFGADGYILKSSDAQHIIDTIYAVLDGKVVFDRE-------IAL 132 Query: 168 YQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + +N K + + ELT RE++ + I++G ++ EIA +L IS TV NYI+ Sbjct: 133 FISNTLKKEASSFSGNVNVLKNELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYIS 192 Query: 223 SIMRKTATKTRSGAIAYAVRN 243 SI++K + R+ Y +N Sbjct: 193 SILQKLQLQNRTQIAIYYYKN 213 >gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 228 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT RE++ L I++GKT+ EI+ L IS TV ++ +I K +TR+ A+ YA+ Sbjct: 164 KFESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYAM 223 Query: 242 RNNIV 246 I+ Sbjct: 224 LTGII 228 >gi|331699960|ref|YP_004336199.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954649|gb|AEA28346.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 223 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 7/162 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR S D + +R E + V+ + Y + Sbjct: 64 VRMQGASGLDLCRTLRERDPEAKVVLLSVYDDEQYLFQALRAGASGYLLKKISGEELVRQ 123 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L L +I + A A +S + G LT RE E L+ + G ++ Sbjct: 124 LELAHTGTTVIDAS----LAGRAVDTAARLQSDEFWPGARQGLTHRESEVLSLMVTGLSN 179 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L +S TV +++ SI RK R+ A+A A+R I Sbjct: 180 RGIATRLVVSDETVKSHLRSIYRKLGVGDRTAAVATALREGI 221 >gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 232 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 17/180 (9%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLT 134 P ++ + + + D Y + + PV + I + Y S Sbjct: 51 PELVISDIMMPQVDGYQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKP 110 Query: 135 FDVARIRIGLMLLFPKGRIILRD-----RLWEIGL----LAAYQANMFKSYDVHWGKDFE 185 FD + + L + R L+ RL EI L + Sbjct: 111 FDPEELEALIKSLIERRRQSLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKVD 170 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ + Sbjct: 171 LTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230 >gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 7/123 (5%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + + V +I + ++ I+ L + + Sbjct: 116 SAGASGFVLKRLPVRQIAEAVRVVAAGEAILFPATLRRMVA-------VRPLDSAAALPR 168 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LTGRE E L ++ G ++ EIA L +S TV ++ +++ K + R+ A+ A + Sbjct: 169 AALTGREEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYES 228 Query: 244 NIV 246 +V Sbjct: 229 GLV 231 >gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3] gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3] Length = 592 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 91/252 (36%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDIN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V +Q +D + P ++ + + + D + Q+ + +F T Sbjct: 407 --VVGLAEDGDQAID-LCGRLQPHVVLMDLDMQQMDGVEATKKIKQQWPHIRVLIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I Q + Sbjct: 464 DTKQALDSLRNGADGFLLKSIETLELANTIRLIHGGGTLIDQGMSHKI----FEQFDEQN 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G + IA L +S TV NY +S K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 211 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 15/163 (9%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143 +R + + R E+ V T + ++ Y + Sbjct: 57 LRMPGMGGTAATRAIRSRFPEVQVLVLTTYDTDTEIVRAIEAGAIGYLLKDVPREELYKA 116 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ + A M D L+ RE+E L+ +++G ++ Sbjct: 117 IYASAHGESVLSPP------VAARLLGRMRAPSDE------SLSTRELEVLSLVAKGLSN 164 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS TV ++ K R+ A+ A+ I+ Sbjct: 165 KEIARELKISEATVKTHLLHTFGKLGVDDRTAAVTVALERGIL 207 >gi|290963132|ref|YP_003494314.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260652658|emb|CBG75791.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + L L F + + + Sbjct: 50 EVVVMDIRMPEVDGIEATRLIGQDEDLAGVKVLVLTTFEEDELVVEALRAGASGFLGKGV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + L+ ++ GL+A A V + LT RE E LT Sbjct: 110 EPAHLLDAVRLVAAGEALLSPAATK--GLIARVLAAPSPGDLVDPRRLATLTPREREVLT 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++DEIA L ++ TV + M K + R+ + A +V Sbjct: 168 LVGSGLSNDEIAERLFVTPVTVKTHANRAMTKLGARDRAQLVVIAYETGLV 218 >gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 280 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 6/164 (3%) Query: 89 CMALSEKDK----YYNVLQRPT-ELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRI 142 + + + + +RP + H E I P Y + Sbjct: 113 DIGMPGMNGIEATRAILKERPETRVLILSMHDNEEYIFPILEAGAAGYVLKRSAATELVS 172 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 L + I+ D ++ AA + + + LT RE E LT I++G T Sbjct: 173 ALRAVVQGHTILHPDVAAKVVSGAARRQKGGGPQEGVPRRVDGLTERETEVLTLIAQGLT 232 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L IS TV + ++IM K YA+R+ ++ Sbjct: 233 NQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGLI 276 >gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K ELT RE E L I +GKT+ +IA L I TV +++ I+ K + R+ A YA Sbjct: 143 KHEELTNREREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAAIYAN 202 Query: 242 RNNI 245 +N + Sbjct: 203 KNKL 206 >gi|150398334|ref|YP_001328801.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029849|gb|ABR61966.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 24/239 (10%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 LA + + L + G + +VR E L +++ WP + Sbjct: 8 QFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPEGWPQIY 67 Query: 91 ----------ALSEKDKYYNVLQRP----TELFCPVFHTLPENITPPA--GMDNRYCSLT 134 + + P + + G+ + Y Sbjct: 68 IRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYI-FP 126 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELT 187 R +G + + + + L +A + ++ + ++T Sbjct: 127 VHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMT 186 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++++G TS++I +L IS +TV+ Y+ I K K R +A A R ++ Sbjct: 187 RREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAFRLGLI 245 >gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 201 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + L+ RE E L ++EG + IA LGIS +TV ++A+++ K R+ Sbjct: 128 PEETAASLPIHLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRT 187 Query: 235 GAIAYAVRNNIV 246 AIA A+R +V Sbjct: 188 DAIATAMRQGLV 199 >gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 231 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 31/210 (14%) Query: 67 DLFQEQKLDSIVSSD------W-----PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112 D QE V+S+ W P ++ + + + D Y + + P PV Sbjct: 20 DYLQESGFSVQVASNALEGWEWMQMNTPDLVISDVMMPQVDGYQFLKQLREDPRFQALPV 79 Query: 113 FHTLPENITP-----PAGMDNRYCSLTFDVARIRIGLMLLFPKGR------------IIL 155 + +T + Y FD + + L + L Sbjct: 80 VFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLLARRAAKTTTTGDDAETPDL 139 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + +I + A +LT RE L ++EG + EIA L S Sbjct: 140 AELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVR 199 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V Y++ + KT T +R+ + +A+ + + Sbjct: 200 NVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto BEST195] Length = 220 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQA 170 + L E + D ++ V + G M+L P+ +L + E L + Sbjct: 90 IAEALEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEI 149 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 K +LT RE+E L + G + EIA L I+ TV N++++I+ K A Sbjct: 150 EKPKEL-------LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAV 202 Query: 231 KTRSGAIAYAVRNNI 245 + R+ A Y+VR + Sbjct: 203 RDRTQAAIYSVRYGV 217 >gi|239918654|ref|YP_002958212.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839861|gb|ACS31658.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 230 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 13/170 (7%) Query: 87 VRCMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR + + +L+RP + F + + + Sbjct: 62 VRMPEMDGIEATRALLRRPDAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAA 121 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTW 196 + + +I L + A +S V + E LT RE E L Sbjct: 122 IRTVHRGDAVIAPSTTRR---LLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVL 178 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + EIA L +S TV ++ ++ K + R A+ A R +V Sbjct: 179 MAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228 >gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 7/159 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLL 147 + + + ++ E+ + ++ Y A + L L Sbjct: 61 GIDGIEATRRIKRQLPEVRVVMLTVYDDHERLFQSIKAGAQGYLIKNIRSAELLDQLRGL 120 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 I R + + + D L+ REVE L ++ ++ EIA Sbjct: 121 ARGEAAISR----RMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIA 176 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS +TV N++ +I+ K +R A AYAV + ++ Sbjct: 177 ARLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHGLI 215 >gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 237 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D + L V + G LL P+ L+A + Sbjct: 102 VYDALAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITK---------RLIAEFVHA 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V D LT RE E LT I+ G ++ EIA L I+ +TV +I + K + Sbjct: 153 RGSRLPVPAAGD--LTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELR 210 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 211 DRAQAVIVAYELGLV 225 >gi|302544568|ref|ZP_07296910.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462186|gb|EFL25279.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 240 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 10/158 (6%) Query: 92 LSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L +RP L V + I G Y + T + + + Sbjct: 90 LRRSAALMAATERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDAIFRVSEG 149 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAV 208 + LA + + F S D + LT RE E L I+ G EIA Sbjct: 150 DAVFSP-------RLAGFVLDAFASTDAPPVDEDMDRLTQREREVLRLIARGYAYKEIAK 202 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV +++++++RK R +A +V Sbjct: 203 QLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240 >gi|13474495|ref|NP_106064.1| hypothetical protein mll5392 [Mesorhizobium loti MAFF303099] gi|14025249|dbj|BAB51850.1| mll5392 [Mesorhizobium loti MAFF303099] Length = 517 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 6/163 (3%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + + + ++ + PV T + A + VA + G Sbjct: 351 EAAQGIGVASAQGVHVGEIELR--GPPVGLTARVTMQLAAHASRSDILASRLVADLATGS 408 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH----WGKDFELTGREVECLTWISEG 200 L F I D L E L + D + LT RE E ++ I++G Sbjct: 409 GLHFEDASRITLDDLDEPMALVRAMSEQHLEPDCRVRTKTTEPAVLTARESEVVSLIADG 468 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 K++ IA L +S +TV ++A+I+ K +R+ A ++VR+ Sbjct: 469 KSNAAIAAELRLSEHTVKRHVANILLKLDLPSRAAAAVFSVRH 511 >gi|312962962|ref|ZP_07777448.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282731|gb|EFQ61326.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 833 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + I RL GLL+ + M + L+ RE+E L I+ G ++ +IA L Sbjct: 740 QAIRELRLRAPGLLS--ELGMEPQASTAGVVENPLSQRELEVLQLIALGSSNLQIADRLF 797 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS +TV + I K + R+ A+A A + Sbjct: 798 ISLHTVKTHARRIHSKLGVERRTQAVAKAKTLGL 831 >gi|311278134|ref|YP_003940365.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308747329|gb|ADO47081.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 217 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 G L+ ++ ++ E+ ++ +S ++ LT RE E L + G T Sbjct: 116 GSRLIEGVKAVLNGEQTAELSVMHPAMYAAEQSSG--EAENIPLTERECEILNELRCGAT 173 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + +IA L IS NTV ++ ++ RK + K R+ A+++A Sbjct: 174 NMDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWA 211 >gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 17/232 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D ++ +W + + +G S L + Q + + S++P Sbjct: 5 DECIELLSAMDARTWFQSLVLSVQKLGYSQVLYALKPNKEAQNSTARIMSNFPDAWRDLY 64 Query: 91 ALSEKDKYYNVLQRPTELFCPVF---HTLPENITPPAGMDNRY------CSLTFDVARIR 141 V+ P+ D R +L + + Sbjct: 65 DNENYSSIDPVVSHSFSSSLPILWEDKLYKTRREKEFAEDARRAGLSHGLTLPIHGPQGQ 124 Query: 142 IGLMLLFPKGRI------ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVEC 193 +G++ L +L+ + +L Y S +H LT RE+E Sbjct: 125 VGMLSLSCAPMPQNEYLQVLQHSIAAASMLRDYAVTSGSSLFLHNSSSTAPHLTPRELEI 184 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L W KT+ EI IL ++ TV + +I RK +R A+A A++ ++ Sbjct: 185 LHWAWAEKTTWEIGKILSLAEPTVEFHFKNIRRKLNVSSRRLAVARAIQLDL 236 >gi|327472699|gb|EGF18126.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 210 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 228 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 8/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V +R G LL P L +R A + Sbjct: 92 VYAALTAGASGFLLKDVTPEHLVAAVRLVRSGDALLAPTITRRLIERF-------AQREE 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S DVH LT RE+E L ++ G ++ E+A L +S TV +I I+ K + Sbjct: 145 AVPSADVHRDLS-GLTPRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRILSKLELR 203 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A + ++ Sbjct: 204 DRVQAVVLAYESGLI 218 >gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] Length = 223 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 4/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L +F I Y + +A I ++ + G I + Sbjct: 86 CEALVVSIFGDEGRVIEALRAGARGYVLKSGSLATIGKDVLSVIEGGSPISPQIARHLLA 145 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + A + +LT RE E L +++G EI LGIS TV N+I +I Sbjct: 146 MVSSGA----AGSSEGAPQIDLTNRETEILNAVAKGYKRREIGEKLGISTGTVGNHINNI 201 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +K + + AIA A R ++ Sbjct: 202 YQKLNVNSNTEAIARATRMGLL 223 >gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 214 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKELQPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + + + +LT REV Sbjct: 99 LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR I Sbjct: 157 DVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 210 >gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102] gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102] Length = 91 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 43/72 (59%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D + L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R Sbjct: 3 SSDPSDPLNISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62 Query: 235 GAIAYAVRNNIV 246 + +A+ N + Sbjct: 63 ALLNWAMDNGKI 74 >gi|298247238|ref|ZP_06971043.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549897|gb|EFH83763.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 939 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 26/225 (11%) Query: 38 PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL------DSIVSSDWPFDLVRCMA 91 + + + V + LL Q L + V+ W V M Sbjct: 719 EVKLGDPLDSPLARERQNVAFARLLLAESQADQALNLLIPLVERATVTQRWNH--VLEMW 776 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + Y+ + ++ L G Y D GL+ + Sbjct: 777 LLQIQAYHMLQRQREALSLL-------AQAVHLGASEGYIRHFVDGGAAIAGLLSQLREQ 829 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGK 201 D L+ +G L + H + L+ RE E L ++ G Sbjct: 830 EHQEEDHLY-LGTLVRAFNQQPAAPPAHLESEPSSRLPQPLLDPLSAREQEVLRLLARGA 888 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +IA L ++ +TV ++I++I+ K R+ A+A A ++ Sbjct: 889 SNQDIAEALVVATSTVKHHISNILSKLEATNRTQAVARARALGLL 933 >gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D + L V + G LL P+ L+A + Sbjct: 91 VYDALAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITK---------RLIAEFVHA 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V D LT RE E LT I+ G ++ EIA L I+ +TV +I + K + Sbjct: 142 RGSRLPVPAAGD--LTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELR 199 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 200 DRAQAVIVAYELGLV 214 >gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 17/221 (7%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 ++ ++ D + + + + ++L K D + ++P + Sbjct: 12 EKIINKIKTCDNNKDINQCLSEMAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKY 71 Query: 90 MALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGMDNR-------YCSLTFDVA 138 + +Y V+ P VF P + S A Sbjct: 72 YDDAGLLEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTA 131 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVE 192 G++ + I D L+ +L + N K D LT RE E Sbjct: 132 SNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKE 191 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 CL W SEGK++ +I+ ILG S TV ++ + K T R Sbjct: 192 CLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|321313453|ref|YP_004205740.1| two-component response regulator YxjM [Bacillus subtilis BSn5] gi|320019727|gb|ADV94713.1| two-component response regulator (YxjM) [Bacillus subtilis BSn5] Length = 218 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214 + ++ A + F++ ++ T RE+E L ++ G +++IA L +S Sbjct: 126 EAIFRTVTAAKIISETFRAKQQPHPEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV ++ I++K + R+ A+ +A+RN IV Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri] Length = 233 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 17/219 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P Sbjct: 14 IINKIKACRNNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWREYYD 73 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 74 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 550 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------- 183 + F V R G++ + K ++ + LAA A M S H G D Sbjct: 425 VPFFVGDGRYGVLAVHIKKEREAKEAEVYMTALAAIGAMMI-SGKSHGGNDGTVNIDMLS 483 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + +G ++ EI+ L IS +TV N+I +I +K RS IA + Sbjct: 484 EQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 543 Query: 244 N 244 N Sbjct: 544 N 544 >gi|21220598|ref|NP_626377.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|5689930|emb|CAB51968.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] Length = 215 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA+ Sbjct: 82 HADVLEAVKSGATGYLLKSASTEELRDAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 138 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D + LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 139 PAPAAGTDDPGAPR---LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 196 QLHNRVELVRYAIERGL 212 >gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 228 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 23/212 (10%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95 + L + + + + +F++ + + PF + Sbjct: 38 LAELRSRILFQRFPAQWLDRYSRKGY------VFRDPIIQHLFHERAPFTWHEGYESCPQ 91 Query: 96 DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + +++ G+ + Y + I + G + + Sbjct: 92 RRNVRLIR---------------GEAAEFGLRDGY-VVPISTIDGEIASLSFGGPGTLPV 135 Query: 156 RDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L + A+Y LT RE +CL W EGKT+ E + ILGISR Sbjct: 136 SADLSVLNFAASYALGRHLHRIATWQRVSSNLTAREWDCLLWAGEGKTNWETSAILGISR 195 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV +I + K +++ AIA A+R ++ Sbjct: 196 STVTKHIMAARAKLGAVSKAHAIATAIRTKLL 227 >gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 212 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 2/141 (1%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 TE+ H + + R L D AR + + K + R E Sbjct: 72 TEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLVDAIDALSKHAPYVPSRAAERP-- 129 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + G+ LT RE E L +++G ++ E+A L IS TV + A++M Sbjct: 130 GNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRANVM 189 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK + + YA+RN IV Sbjct: 190 RKLGASSIVDLVHYAIRNGIV 210 >gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 YC ++ + L + EI ++ +++ + + ++ Sbjct: 97 LIEAGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIR--SSIESSQSQPPEQNFP 154 Query: 182 K-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K D LTGRE+E L +++GKT+ EIA +L I+ TV ++ +I+ K R A+ A Sbjct: 155 KSDHPLTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVA 214 Query: 241 VRNNIV 246 ++ ++ Sbjct: 215 LQKRLI 220 >gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] Length = 230 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 1/108 (0%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWIS 198 + + ++ G + +R + + L Y VH K+ L+ RE + L W+S Sbjct: 121 VVLSIISHKDSGIDMTANRSYFMHFLVQLHQKTLNLYSKVHQKKNVFLSPRERQILKWVS 180 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT E+++IL I+ TV ++++ M+K A+ + ++ Sbjct: 181 AGKTYAEVSLILSITERTVKFHMSNAMKKLGVNNARHAVKLGMELRLL 228 >gi|323356651|ref|YP_004223047.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273022|dbj|BAJ73167.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 221 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V SD + L+ L L F + + + Sbjct: 49 DVVVSDIRMPRRDGIELTALVCDDPALTETRVLILTTFEEDDYVVAALRAGASGFIGKGA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + I ++ + G ++ L+ Y + LT RE E L Sbjct: 109 EPEDIVRAVLSVHEGGALLSPAATR--ALIEKYVRTTGAADVPSPVSLDALTDREREVLL 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G+++DEIA L IS +T ++ + M K R+ + A + ++ Sbjct: 167 HVARGRSNDEIAAHLYISPHTAKTHVKNTMLKLGAHDRAQLVIAAYESGLL 217 >gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11] Length = 221 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L+ I++GKT+ EIA L I+ TV ++ +I+ K + R+ A+ A++ Sbjct: 159 PLTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQAG 218 Query: 245 IV 246 ++ Sbjct: 219 LI 220 >gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 241 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 22/185 (11%) Query: 59 SHFLLVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 SH+L Q +++D ++ S+ PF + + + R +LF Sbjct: 62 SHYL-----RHQYERIDPVIEWARCSECPFQWGPGL------GHAGISTRQQQLFDEAAE 110 Query: 115 TLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 +D R ++TF R+ + + + L EI + + Sbjct: 111 FGICCGLTIPLVDRRGGVAAMTFAADRLDPTFLRVAEQYEQAL-----EIMAMCFHIGVR 165 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K LT RE ECL W ++GK++ EI ILGI T ++ + +K +T Sbjct: 166 RKLARGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRT 225 Query: 233 RSGAI 237 ++ A+ Sbjct: 226 KNQAV 230 >gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942] gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942] Length = 218 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE+E L ++ G ++EIA L +S +TV ++ I++K + R+ A+ +A+RN Sbjct: 156 PFTKRELEVLQQMAYGLRNEEIADKLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNG 215 Query: 245 IV 246 IV Sbjct: 216 IV 217 >gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 221 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 63/176 (35%), Gaps = 3/176 (1%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++ +V D + + + + + P L F T + + + Sbjct: 45 DRVEADVVVMDLRMPTMDGVEATRRICAGSAGGGPRVLVLTTFDTEADAFAALRAGASGF 104 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + ++ ++ LL + + + + +LT RE Sbjct: 105 LLKNVPPEELMAAIRVVAQGDSVVAPSITRR--LLDRFAGQLGPAPTADP-RLAQLTDRE 161 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L +++G ++ EIA + ++ TV ++ I+ K + R A+ A + +V Sbjct: 162 REVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLV 217 >gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 218 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 8/156 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLL 147 M E + L + H LP + Y + ++ ++ + Sbjct: 63 DMDGLEATRRIAALGLAARVLMLTLHDLPAYVREALAAGAAGYVLKDTAIDDLQAAIVRV 122 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + D L + + + LTGRE E + I+EG T+ EI Sbjct: 123 AQGQTALPLD-------LVSAAMRAPEPVERDPTALSSLTGREREIVHLIAEGMTNKEIG 175 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LGIS TV ++ ++ K R+ A A R+ Sbjct: 176 RSLGISPATVKAHVERLIAKLGVTDRTQAAVLASRH 211 >gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 20/224 (8%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 D R++ +D W + E G + V I + P ++ Sbjct: 10 DDAAIRVLVVDDHPMWRDAVARDLEARGFT----VAGTADSVAAAGRIAGAVQPTVVLMD 65 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 M+L + D V P+ + + V G ++ Sbjct: 66 MSLPDGDGAAG--------TTLVLQHAPQAAVLILSASDEREDVVEAVKAGACGYLVKSA 117 Query: 150 KGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ ++ GL + +LT RE E L +++G Sbjct: 118 SAEELVAAVRATAAHQPVFTPGLAGLVLGEFRRMAAEPEPAGPQLTPRETEVLRLVAKGL 177 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ +IA L +S TV N++ + +RK R YA+ N + Sbjct: 178 SAKQIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENGL 221 >gi|218509884|ref|ZP_03507762.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 373 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 32/215 (14%) Query: 12 LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56 +N D R V+ + +RSDL R+I + + R+ E Sbjct: 1 MNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCELENW 60 Query: 57 GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 G+S+ F D + + LD I S P LS + P + F P Sbjct: 61 GSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAPFMT 111 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173 L + I P +G + + + G +L D + E+ G ++ Sbjct: 112 RLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLL 166 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + L+ RE+ CL +G+ S+EIA Sbjct: 167 SLDERRTAAAEALSEREIACLQLAGDGRISEEIAR 201 >gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 226 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L W+++G +++EIA L ++ TV ++ SI K +R+ AI A++ Sbjct: 161 EVHLTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALK 220 Query: 243 NNIV 246 +V Sbjct: 221 LGLV 224 >gi|298244102|ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551583|gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + + L + I G L P + ++ + Sbjct: 91 VFQALRAGASGYMLKEAADTELITALHVILSGQFYLSPAAQSVM-------------VGD 137 Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + KD LT RE E L ++EG T+++IA L IS TV+ + IM K Sbjct: 138 YLQRSKTGEEKDSYSSLTEREREILKLVAEGFTNNQIAERLVISPKTVDTHRTHIMDKLN 197 Query: 230 TKTRSGAIAYAVRNNIV 246 +R+ + YA+R ++ Sbjct: 198 LHSRAELVKYAMRRGLL 214 >gi|54025090|ref|YP_119332.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016598|dbj|BAD57968.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L V + G ++ PK L DRL +A A Sbjct: 91 VLGALRAGASGFLLKDTPPEDLVSAVRSVAAGDAVVSPKVTKRLLDRL-----IADDPAG 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M + + LT RE E L I+ G+++ EIA L +S TV ++ ++ K + Sbjct: 146 MRDAAVLDV-----LTAREREVLEQIAAGRSNAEIAAELFLSEATVKTHVGRVLTKLGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 201 DRVQAVVLAYETGLV 215 >gi|324994067|gb|EGC25981.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327459273|gb|EGF05619.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327490491|gb|EGF22272.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] Length = 210 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 218 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 43 VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + + + +LT REV Sbjct: 103 LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 160 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR I Sbjct: 161 DVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 214 >gi|319442855|ref|ZP_07992011.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 251 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D G LT RE E L ++ G ++ EIA L +S TV ++ ++ KT ++ R Sbjct: 170 PGPDDDLGLVDPLTPREREILVLMATGASNQEIAARLFVSLPTVKTHVGRVLAKTGSRDR 229 Query: 234 SGAIAYAVRNNIV 246 A+ +A R+ +V Sbjct: 230 VHAVLFAFRHGLV 242 >gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0205] Length = 243 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 10/186 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++ L +V SD + L K + L +F + I + Y Sbjct: 57 QELLPDVVISDVMMPRLDGYGLLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDY 116 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKD--- 183 FD + + + + +L + +IG +A + K Sbjct: 117 IPKPFDPDELVARVHNVVKRQERLLTEAARFADADIGQMAKQITEIRSLLATGGSKQPTA 176 Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA Sbjct: 177 AVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYA 236 Query: 241 VRNNIV 246 + N +V Sbjct: 237 LENGLV 242 >gi|294815678|ref|ZP_06774321.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] gi|326444025|ref|ZP_08218759.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328277|gb|EFG09920.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 45/81 (55%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A H G EL+GREVE L ++EG+++ I V +G+S TV +++A I Sbjct: 140 ARLGHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIA 199 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK T R+G +A A+R I+ Sbjct: 200 RKLGTGDRAGMVAVALRTGII 220 >gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal transduction system [Streptomyces lividans] Length = 225 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 8/178 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPT------ELFCPVFHTLPENITPPAGMDNR 129 +V P ++ + + E D + T + L + + Sbjct: 43 EVVLRTRPDIVLMDIRMPELDGLEATRRILTGAPDAPRVIMLTTFDLDDLVYAALAAGAS 102 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTG 188 L + + L G +L + L+ + + + +D + LT Sbjct: 103 GFLLKDVTPEHLVAAVRLVRTGDALLAPAITRR-LVERHAHTTPPAPNTTAHRDLQTLTP 161 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++G ++ E+A L +S TV ++ I+ K + R A+ A +V Sbjct: 162 RELEVLQLLAQGLSNAELAERLYLSETTVKTHVGRILAKLQLRDRVQAVVTAYETGLV 219 >gi|294812171|ref|ZP_06770814.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|326440673|ref|ZP_08215407.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324770|gb|EFG06413.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA Sbjct: 95 HADVLEAVKSGATGYLLKSASTEELIDAVRRTADGDAVFTPGLAGLV---LGEYRRLAGE 151 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + + LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 152 PAPTPGGPEPKAPR---LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 208 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 209 QLHNRVELVRYAIERGL 225 >gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136] Length = 216 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L ++ G+++ EIA L IS TV ++ S+ K +R+ AIA A R Sbjct: 151 NEPLTRREQEVLELLARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASR 210 Query: 243 NNIV 246 +V Sbjct: 211 KGLV 214 >gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 247 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 28/237 (11%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--- 91 P + + R+ + +G F LVR + +D I++ WP D A Sbjct: 13 EKDPSEGAATMRERLSKVVAGLGFDFFKLVRQAGPESGAVDMILAEQWPSDWPELYAKRK 72 Query: 92 -------------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--GMDNRYCSLTFD 136 ++ ++ E P + + + G+++ Y Sbjct: 73 YATIDPTLRYLGHSQGGFRWREPMEAYQE--DPHYKRMERMMADARRFGLEDGY-VFPVH 129 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLA-----AYQANMFKSYDVHWGKD--FELTGR 189 R +G + + +LR + + LA + + + ++T R Sbjct: 130 GRRGLVGYLTIAGGYVELLRSEMAMMDALAKKAFWELVELLDPAAHERLNRPVTMQMTKR 189 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E++ L ++ G TS+E+ LG+S +TV+ Y+ I K K R +A A R ++ Sbjct: 190 EMQTLEYLGCGMTSNEMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRLGLI 246 >gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 178 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L ++EG + IA LGIS +TV ++A I+ K TR+ A+ +R Sbjct: 115 PLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLGIRKG 174 Query: 245 IV 246 ++ Sbjct: 175 LI 176 >gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 195 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 4/175 (2%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + L +V D + + + + + F G + + Sbjct: 19 EHLPDVVLMDIRMPGLDGLEATRRIVADRAASHVHVVVVTTFELDEYVTDAIRGGASGFL 78 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + + ++ L + A+ ++ G + ELT RE Sbjct: 79 VKDTEPVDLVRAVRVAARGDALLSPTVTRR---LLSRVADATRAVGPVRGVE-ELTPRER 134 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G +++EIA L +S +TV +++ +M K + R+ + A + +V Sbjct: 135 EVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDRAQLVVAAYESGVV 189 >gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE E LT ++ GK + EIA L I + TV Y++ I+ K +R+ A Sbjct: 140 EPSGPEQLTERETEVLTMLARGKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAV 199 Query: 239 YAVRNNIV 246 YAV++ +V Sbjct: 200 YAVQSGLV 207 >gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 257 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 5/240 (2%) Query: 7 QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66 Q+N + + T + + + AR+ + + +T T +H LV Sbjct: 22 QMNPTITNKKPALTGNLLLVGHEKRMRARLCAILSDLDYTADALTYTCCPEEAHAQLVER 81 Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 F +DS ++ DL+ + + V+ P V L + Sbjct: 82 P-FDMVLVDSSLAHGNGIDLIGALHARDPRMPIVVISDPAA-EADVMSALRAGASGYLLK 139 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + L+ + G M + P I R L + + A + L Sbjct: 140 ERDDTELSVSLRSALRGGMPIDP---FIARQVLRSLVPADPHAACSPPAGCAGPEARSPL 196 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E L I G T+ EIA L +S T+ +++ +I +K KTR+ A A R ++ Sbjct: 197 STRELEILRCIDRGATNREIAAALSLSTLTIESHVKNIHKKLGVKTRTQATFEARRYGLL 256 >gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661] gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661] Length = 240 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L W +EGKTS EI++IL IS NTVN + + ++ ++ +YA Sbjct: 177 NMELSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAAA 236 Query: 243 NNIV 246 ++ Sbjct: 237 IGLL 240 >gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 229 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 8/134 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L D + V + G L P + L + L E Sbjct: 99 FPALRAGARGYLTKDAGGDEIVRAVESVLSGEAGLAPSIQRRLLEHLSEP-------EPE 151 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D LT RE E + I+EG ++ EIA L +S TV +I ++ KT K Sbjct: 152 PWATPADQAPD-GLTARECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKD 210 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA +V Sbjct: 211 RAQAVRYAYAKGLV 224 >gi|289669083|ref|ZP_06490158.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 213 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L ++ G ++ +I L IS TV ++ +I+ K + R+ A+ A+R Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 237 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 18/234 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R L + + + + G F F S++P + Sbjct: 5 REGYLEILSRITTEEEFFSLALEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKS 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARI 140 + +++ + P+ + G+ + + S+ Sbjct: 65 RYISEDYTSIDPIVRHGLLEYMPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYG 123 Query: 141 RIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 I + L I LW +L A ++ V + LT RE E Sbjct: 124 LISMFSLVRSAESIAAAEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETE 182 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GKT EI +IL I + TV +I + MRK + ++ A A ++ Sbjct: 183 MLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236 >gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 218 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 70/211 (33%), Gaps = 11/211 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + F++V ++ +I + P +V + + D Sbjct: 13 VDDQDLVRSGLRRILRR--KDGFVIVAECADGDEVPAAIAAHR-PDVVVMDLRMRRVDGI 69 Query: 98 --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + RP L F+ + + + + + Sbjct: 70 EATRRLGGRPPVLALTTFNEDELLSGALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLD 129 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L Y + ELT RE + LT I +G ++ EIA L IS Sbjct: 130 PAVTSRV--LTTY---RKAAPGPRGAAIAELTTRERDVLTLIGKGLSNSEIADELCISGV 184 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++I I K + R+ AI YA N IV Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215 >gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 223 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 1/136 (0%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GL 164 + V + Y T D + L ++ + + ++ Sbjct: 82 RVVMLTVSEDGQDLAAALRNGAQGYLLKTIDGDLLSEALRRAARGEPVVSPEMMGKLVAA 141 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + A ++ + L+ RE E L I+ G ++ EIA L I+ TV ++ I Sbjct: 142 FQSQGAPEPQAPEPDEAPASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIHVQHI 201 Query: 225 MRKTATKTRSGAIAYA 240 +RK +R A YA Sbjct: 202 LRKLGLSSRVQAAVYA 217 >gi|297156704|gb|ADI06416.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 195 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 8/137 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAY 168 F L D + + + G L PK + L +RL A Sbjct: 46 FPALKAGARGYVTKDADAEEIARAIEDVMSGQAGLSPKVQRRLLERLVASTADTPDTADG 105 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + V LT RE E LT ++EG ++ EIA L I TV +I K Sbjct: 106 TAAKTGAGAVPGPLPDGLTPREAEVLTLVAEGLSNAEIARRLHIGPATVKTHI----AKA 161 Query: 229 ATKTRSGAIAYAVRNNI 245 + R+ A+ YA R+ I Sbjct: 162 GVRDRAQAVRYAYRSGI 178 >gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 257 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 194 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 248 >gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 231 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 31/210 (14%) Query: 67 DLFQEQKLDSIVSSD----W-------PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112 D QE V+S+ W P ++ + + + D Y + + P PV Sbjct: 20 DYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQLREDPRFQSLPV 79 Query: 113 FHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------ 161 + +T + Y FD + + L + E Sbjct: 80 VFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLLTRRNSKPPKTTEEGETPDI 139 Query: 162 ------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 I + A +LT RE L ++EG + EIA L S Sbjct: 140 AELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVR 199 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V Y++ + KT T +R+ + +A+ + + Sbjct: 200 NVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 221 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTL-PENITPPAGMDNRYCSLTFD 136 P +V + L D + ++ ++ + HTL E + + + YC Sbjct: 58 PDLVVMDIGLPRLDGIAATKQIKEQLPDIHVVMLTSHTLQTEVVAALSSGADAYCIKGAS 117 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195 + R L + +A + K ++ L + RE+E L Sbjct: 118 LER-------LLAAIEAAQDGATYLDPQIARLVLDNLKPPTSEPNQNISLLSERELEVLK 170 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I EGK++++IA L +S NT+ ++ IM K A R A A+R+ +V Sbjct: 171 LIVEGKSNNQIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 221 >gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 315 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F+LT RE E L W ++GKTS +I ILG S TVN ++ + K +TR+ A A A Sbjct: 251 FKLTSRESEVLYWATKGKTSRDIGDILGSSPRTVNKHLEHVFVKLGVETRTAAAALA 307 >gi|260466536|ref|ZP_05812725.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029685|gb|EEW30972.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 517 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 6/163 (3%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D + + ++ + + P+ T I A + VA + +G Sbjct: 351 DAAQQIGVASAQGAH--VGEIETRGPPIGLTGRVTIQLAAHAGRGDILASRLVADLAVGS 408 Query: 145 MLLFPKGRIILRDRLWEIG--LLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEG 200 L F + + D L E +LA + ++ V + LT RE E + I++G Sbjct: 409 GLHFVEAGRVSIDELDEPLALVLAMSEQHLEPACRPKVKAAEPASLTVRESEVVNLIADG 468 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 K++ IA L +S +TV ++A+I+ K +R+ A A++VR+ Sbjct: 469 KSNAAIAAELRLSEHTVKRHVANILLKLDLPSRAAAAAFSVRH 511 >gi|229821303|ref|YP_002882829.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567216|gb|ACQ81067.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 231 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 2/142 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + + + + + +I L Sbjct: 88 PKIVILTTFDLDEYVLAAIKAGASGFLLKDTPPEEMLAAIRTVHAGDAVIAPSSTKR--L 145 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + A + LT RE E L I+ G+T+ EI L ++ TV ++ I Sbjct: 146 IEHLAAVLPDEQKTPTTALDALTEREREVLVLIARGRTNTEIGADLFVAEATVKTHVGRI 205 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ A +V Sbjct: 206 LAKLGARDRVQAVVIAYETGLV 227 >gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct] Length = 238 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 18/234 (7%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R L + + + + + G F F S++P + Sbjct: 5 REGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKS 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARI 140 + +++ + P+ + G+ + + S+ Sbjct: 65 RYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYG 123 Query: 141 RIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 I ++ L I LW +L A ++ V + LT RE E Sbjct: 124 LISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETE 182 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W + GKT EI +IL I + TV +I + +RK + ++ A A ++ Sbjct: 183 MLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAIGLL 236 >gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5] gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5] Length = 220 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%) Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAY 168 + L E + D ++ V + G M+L P+ +L + E L Sbjct: 88 ALIAEALEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGIN 147 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + + +LT RE+E L + G + EIA L I+ TV N++++I+ K Sbjct: 148 EIE-------KPNELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKL 200 Query: 229 ATKTRSGAIAYAVRNNI 245 A + R+ A Y+VR + Sbjct: 201 AVRDRTQAAIYSVRYGV 217 >gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 68/183 (37%), Gaps = 27/183 (14%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 +R + K I+ S WP + + + D Y V L ++ Sbjct: 55 IRMPVMDGLKAAKIIQSRWPHIKILMLTTFDDDNY-------------VMEALRIGVSGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + SL + G + + E G+ A + K D D Sbjct: 102 ILKNGDTDSLLRSIRSALKGGLSI-------------EEGVAAKVVPQLMKQQDTK-EPD 147 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE L I EG +++EIA L IS TV N + I+ K + R+ YA+R+ Sbjct: 148 PSLTPRERAILKCIGEGLSNNEIAERLAISTGTVKNNTSQILTKLDLRDRTQLAIYAIRH 207 Query: 244 NIV 246 N+V Sbjct: 208 NLV 210 >gi|254385641|ref|ZP_05000964.1| two component system response regulator [Streptomyces sp. Mg1] gi|194344509|gb|EDX25475.1| two component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 3/145 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + P + F + + + A + + + ++ Sbjct: 75 EHPKVIILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRR- 133 Query: 163 GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL + + + K+ E LT RE E + +++G ++ EIA L +S TV ++ Sbjct: 134 -LLDRFAPMLPTTTSEPRNKEIERLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHV 192 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R + A +V Sbjct: 193 GRILTKLGLRDRVQVVVLAYETGLV 217 >gi|325695228|gb|EGD37129.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 210 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 21/203 (10%) Query: 55 YVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 +G +L ++ D+ + + +D P ++ + + E + E Sbjct: 13 RLGLKSYLELQEDIAEVSEAVNGKEGVEQALADRPDVIIMDIVMPEMNG--------IEA 64 Query: 109 FCPVFHTLPEN--ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 + PE + + +DN D G ML ILR Sbjct: 65 TLAILKEWPEAKILILTSYLDNEKIYPVLDAGAH--GYMLKTSSAEEILRAVKKVAKGEF 122 Query: 167 AYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + K + H +LT RE + L +++G + IA L IS TV ++++ Sbjct: 123 AIETEVSKKVEYHRNHIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSN 182 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K R+ A+ YA ++++V Sbjct: 183 ILSKLEVSDRTQAVVYAFQHHLV 205 >gi|325686912|gb|EGD28936.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 210 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|315221997|ref|ZP_07863908.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188963|gb|EFU22667.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 210 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|332528409|ref|ZP_08404401.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332042088|gb|EGI78422.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 312 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L + L AA S G LT RE E L+W+++GKT+ +I ILG+S TVN Sbjct: 226 LRHLPLAAAEAVARDPSQRRLSGA--ALTPRETEVLSWLAKGKTNRDIGDILGMSPRTVN 283 Query: 219 NYIASIMRKTATKTRS 234 ++ I K +TR+ Sbjct: 284 KHLEHIFEKLGVETRT 299 >gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] Length = 210 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 59 SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHT 115 + F ++ + L+ + + P ++ + + E + + + ++ V + Sbjct: 27 ASFNVIADFNNGRELLEHLDETQLPDLIIMDLVMPELNGIEATRRIKAKYPDVKVLVLSS 86 Query: 116 LPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQA 170 + MD + Y + + + + +I D + + G+ A+ Sbjct: 87 FIDEEHVLGVMDAGADGYEMKDSEPKALINTIKQIAAGEQIFHPDVMKVRKSGMNLAHLR 146 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N L+ RE+E L +SEG T+ EIA L +S TV +++ I K Sbjct: 147 N-------------PLSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A Y V+ ++ Sbjct: 194 GDRTQASMYGVKYKLI 209 >gi|327462458|gb|EGF08783.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362992|gb|EGJ40781.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332364570|gb|EGJ42339.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] gi|332366354|gb|EGJ44105.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 210 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 218 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 13/135 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L ++ + L V + G ++L P+ + R + E G A +A+ Sbjct: 93 VRRLLKAGVSGYVLKKSAGAELANAVRAVHRGGLVLDPE---VARTAMEEAGPAAPGEAD 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++S LT RE + L ++EG+++ E+A +LGIS T ++ +M K Sbjct: 150 PYES----------LTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVH 199 Query: 232 TRSGAIAYAVRNNIV 246 R+ + +A+R ++ Sbjct: 200 NRTELVRFAIRKGVI 214 >gi|306817801|ref|ZP_07451542.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|304649450|gb|EFM46734.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] Length = 233 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G T+ E+A L IS TV ++ +I+ K + R A+ +A N + Sbjct: 172 LTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENGL 231 Query: 246 V 246 V Sbjct: 232 V 232 >gi|227876856|ref|ZP_03994965.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269977833|ref|ZP_06184790.1| response regulator protein VraR [Mobiluncus mulieris 28-1] gi|227842753|gb|EEJ52953.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269934003|gb|EEZ90580.1| response regulator protein VraR [Mobiluncus mulieris 28-1] Length = 233 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G T+ E+A L IS TV ++ +I+ K + R A+ +A N + Sbjct: 172 LTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENGL 231 Query: 246 V 246 V Sbjct: 232 V 232 >gi|70728347|ref|YP_258096.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68342646|gb|AAY90252.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 848 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGR 189 +L + + L+ + + RL + LLAA +A S ++ L+ R Sbjct: 731 PALAQEALQAGQALVQRCNLPQALHELRLRQPLLLAAGEALQTPSSAGPLENRESLLSLR 790 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E++ L I++G ++ +IA L IS +TV + I K + R+ A+A A + Sbjct: 791 ELQVLQLIAQGCSNQQIAEQLFISLHTVKTHGRRIHSKLGVERRTQAVAKAQALGL 846 >gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] Length = 214 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + K +LT REV Sbjct: 99 LKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR + Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210 >gi|125718640|ref|YP_001035773.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323350296|ref|ZP_08085961.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498557|gb|ABN45223.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322123481|gb|EFX95152.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991776|gb|EGC23708.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|325697714|gb|EGD39599.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327467206|gb|EGF12710.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 210 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|330468534|ref|YP_004406277.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811505|gb|AEB45677.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 229 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 10/171 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + + + PV F + + + S Sbjct: 58 PDVVLMDIRMPRMDG-VSATRAIVDARLPVRVLILTTFELDEYVVGGLRAGASGFLSKDV 116 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L LL + + LT RE E L Sbjct: 117 PAEDLITAIRTVAAGDAVVAPRILRR--LLDRFADVLPDPAASPPKALSTLTDREREVLG 174 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L +S T+ ++ +++ K + R A+ A + +V Sbjct: 175 QVARGLSNAEIARALSVSETTIKTHVGNVLTKLGLRDRVQAVVLAYESGLV 225 >gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] Length = 214 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKQLQPEIILMDIRMPRMNGVEGTRLVREKFPYIKVLMLTTFSDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ ++ G ++ +D +I + K +LT REV Sbjct: 99 LKDMETDAIAQAILTVYSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR + Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210 >gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 123 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 42/78 (53%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + +D LT RE++ L ++EG ++ IA LGIS +TV ++ S++ K Sbjct: 44 AATIVARDPRSMPEDIALTQRELDVLALMAEGASNKMIARQLGISVHTVKFHVGSLLDKL 103 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+A+A R ++ Sbjct: 104 DATGRTDAVAHAARRGVI 121 >gi|332358064|gb|EGJ35897.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 210 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|322386960|ref|ZP_08060584.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321269242|gb|EFX52178.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 210 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|319939666|ref|ZP_08014025.1| response regulator [Streptococcus anginosus 1_2_62CV] gi|319811255|gb|EFW07561.1| response regulator [Streptococcus anginosus 1_2_62CV] Length = 210 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|300787274|ref|YP_003767565.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796788|gb|ADJ47163.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 7/155 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + + L + T + + Y + + Sbjct: 63 GVAATARIVAEVPGCRVLILTTYDTDQNIVHAVEAGASGYLLKDATPEELAAAVRAAAGG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ + A N +S + LT RE + L ++ G T+ +I L Sbjct: 123 ETVLSP-------AIVAKLVNHLRSPAPAPAEPELLTPRETQVLRLVARGLTNADIGREL 175 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS TV ++ + K R+ A+ A++ + Sbjct: 176 HISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRGV 210 >gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium intracellulare ATCC 13950] Length = 218 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 72/211 (34%), Gaps = 11/211 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + F++V ++ + + V+ P +V + + D Sbjct: 13 VDDQDLVRSGLRRILRR--KDGFVIVAECADGDE-VPAAVAEHRPDVVVMDLRMRRVDGI 69 Query: 98 --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + RP L F+ + + + + + Sbjct: 70 EATRRLGGRPPVLALTTFNEDELLSGALRAGAAGFVLKDSSAEELIRAVRAVARGDSYLD 129 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L Y + ELT RE++ LT I +G ++ EIA L IS Sbjct: 130 PAVTSRV--LTTY---RKAAPGPRGAAIAELTTRELDVLTLIGQGLSNTEIAGKLCISGV 184 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++I I K + R+ AI YA N IV Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215 >gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147 ++ + +L++ E + H E I P Y + L + Sbjct: 110 GMNGIEATRAILKQRPETRVLILSMHDNEEYIFPILEAGAAGYVLKRSAATELVSALRAV 169 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 I+ D ++ AA + + + + LT RE E LT I++G T+ EIA Sbjct: 170 VQGHTILHPDVAAKVVSGAARRQKGEGAGEGAPRRVDGLTERETEVLTLIAQGLTNQEIA 229 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV + ++IM K YA+R+ ++ Sbjct: 230 DRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGLI 268 >gi|16080942|ref|NP_391770.1| two-component response regulator YxjM [Bacillus subtilis subsp. subtilis str. 168] gi|221311860|ref|ZP_03593707.1| hypothetical protein Bsubs1_20996 [Bacillus subtilis subsp. subtilis str. 168] gi|221316184|ref|ZP_03597989.1| hypothetical protein BsubsN3_20907 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321096|ref|ZP_03602390.1| hypothetical protein BsubsJ_20855 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325380|ref|ZP_03606674.1| hypothetical protein BsubsS_21006 [Bacillus subtilis subsp. subtilis str. SMY] gi|20141933|sp|P55184|YXJL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yxjL gi|1783236|dbj|BAA11713.1| yxjL [Bacillus subtilis] gi|2636426|emb|CAB15917.1| two-component response regulator [YxjM] [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214 + ++ A + F++ ++ T RE+E L ++ G +++IA L +S Sbjct: 126 EAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV ++ I++K + R+ A+ +A+RN IV Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 15/213 (7%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + + + M + VG + ++SS P ++ + + D Sbjct: 16 VRTGLRLMLGMEEGIDLVG---------EAADGSAALHLISSLEPDVVLMDLRMPVMDGL 66 Query: 99 YNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 + + + + + + + R L + + +G + Sbjct: 67 EAIERIRVQWPHIAIIVLTTYDEDDLMLRSLQAGVRGYLLKESSLETVLQAIESAARGDM 126 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + + L + L A Q S H DF LT RE E L I+ G+ E+ LGI+ Sbjct: 127 LQQPELMKRILDHATQKRSAPSA-AHENSDFHLTAREREVLAGIASGERGKEVGARLGIT 185 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 R TV +Y+ SI K +R+ A+A A+ + ++ Sbjct: 186 RRTVESYLNSIYTKLNVDSRAAAVAIAIEHGLL 218 >gi|289665829|ref|ZP_06487410.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 199 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L ++ G ++ +I L IS TV ++ +I+ K + R+ A+ A+R Sbjct: 132 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALR 191 Query: 243 NNIV 246 I+ Sbjct: 192 RGIL 195 >gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 391 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G ++ E A L +S TV +YI+S +RK K R+ A+A A+R + Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389 Query: 246 V 246 + Sbjct: 390 I 390 >gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 4/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L IG A Sbjct: 97 VYQALRSGASGFLLKDASARQLGEAVRVVAAGEALLAPTVTKRLITTFSRIGEAAGLGGP 156 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G+ ELT RE E L +++G ++ EIA L ++ +TV +++ I+ K + Sbjct: 157 LPSPQ----GRLAELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLR 212 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 213 DRTQAAVFAYEARLV 227 >gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 228 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 7/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 50 DVVLMDIRMPGTDGLAATRMISADPDLADVRVVILTTFEVDDYVVQSLRAGASGFLGKGS 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFELTGRE 190 + + + + ++ GL++ + A + LTGRE Sbjct: 110 EPEELLTAIRIAAGGQALLSPAA--TTGLISRFLAQQDPDDAGDRDPARGERLASLTGRE 167 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++DEIA L +S TV ++ M K + R+ + A + +V Sbjct: 168 REVLVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223 >gi|256788263|ref|ZP_05526694.1| two-component system regulator [Streptomyces lividans TK24] gi|289772155|ref|ZP_06531533.1| two-component system regulator [Streptomyces lividans TK24] gi|289702354|gb|EFD69783.1| two-component system regulator [Streptomyces lividans TK24] Length = 240 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA+ Sbjct: 107 HADVLEAVKSGATGYLLKSASTEELRDAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 163 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D + LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 164 PAPAAGTDDPGAPR---LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 220 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 221 QLHNRVELVRYAIERGL 237 >gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 208 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 36/68 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 K LT RE E L + EGK++ EIA L I+ TV +++ I+ K + R+ A Sbjct: 138 QERPKHDVLTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDLQDRTQAA 197 Query: 238 AYAVRNNI 245 YA ++ + Sbjct: 198 IYANKHQL 205 >gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 61/175 (34%), Gaps = 4/175 (2%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + +V D ++ + + + + F + + Sbjct: 46 RTHPDVVLMDVRMPVMDGIEALRQLSENPATAQTKVVMLTTFDADEYVHESLRLGASGFL 105 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + ++ ++ ++ +A + D +LT RE Sbjct: 106 LKDASPDELASAIRVVHAGEALLSPSVTRQVIA-QFARAPRKRKQDPRLK---QLTERER 161 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ G ++ EIA L ++ TV +++ I+ K + R+ A+ +A + +V Sbjct: 162 EVLENIARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESGLV 216 >gi|326772918|ref|ZP_08232202.1| two-component system response regulator TcsR7 [Actinomyces viscosus C505] gi|326637550|gb|EGE38452.1| two-component system response regulator TcsR7 [Actinomyces viscosus C505] Length = 230 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + ++ +L + + G ++L PK +L +RL A + S+ Sbjct: 100 GVRGFVAKEDDVDALAGAIKQAVAGNIVLTPKSSAVLSERLQPAS--ADRGSTPPPSFSR 157 Query: 179 HWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 L+ RE+E L ISE T+ +IA L +S T+ +++++I+ K R Sbjct: 158 KEASPLPFGVTLSTRELEVLALISEALTNKQIANRLNLSEATIKSHVSAIIAKLGVPDRV 217 Query: 235 GAIAYAVRNNIV 246 GA +A+++ +V Sbjct: 218 GAAVFAMQHGLV 229 >gi|328945025|gb|EGG39181.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 210 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti] gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a heterodimer with VisN [Sinorhizobium meliloti 1021] gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 25/212 (11%) Query: 42 TVSWTMRMYALTEYVGASHFLLVR--WDLFQEQKLDSIVSSDWPFDL--VRCMALSEKDK 97 + T ++ + GAS R L+ ++ L + S P +E Sbjct: 52 GLPATRKLTCVLHNWGASCEENARDLIMLYGDELLQHLDLSLLPVLWNGQGEHQTAEVSD 111 Query: 98 YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR- 156 + +R E P Y + F + G + G I Sbjct: 112 FGPFTRRLRERKLP------------------YSGIAFPIRLGAQGNGYVMFAGSYIDAS 153 Query: 157 -DRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +++ E+ G A A++ + + K L+ RE+ CL +G S+EIA +G+S Sbjct: 154 GEQIVELHGRSAQIMADLLAADEKRLFKAEALSDREIACLQMAGDGHISEEIAEKMGLSV 213 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TVN Y+ + K + R AIA A+R + Sbjct: 214 HTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245 >gi|302561087|ref|ZP_07313429.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302478705|gb|EFL41798.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 230 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 5/137 (3%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ L E LA+ Sbjct: 96 HADVLEAVKSGATGYLLKSASTEDLQDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 152 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 153 PAGPAPGDGEPGAPR--LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 210 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 211 QLHNRVELVRYAIERGL 227 >gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh 114] gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 17/186 (9%) Query: 77 IVSSDWPFDLVRCMALSEKDKY------YNVLQRP-TELFCPVFHTLPENITPP------ 123 IVS +P V SE + ++L RP P L Sbjct: 56 IVSDGYPEGWVCEYLQSELFRVDPIPQLASILSRPFRWSEAPKLMRLSPEGERYMQTLAQ 115 Query: 124 -AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 D + R + + + D ++E+ AA A++ + + Sbjct: 116 SGLGDGVAMQVYGPNMRNAYVGLGFGKQDPDLTADEIFELQ-CAAQIAHIRYCELTEFRQ 174 Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ REVE L WI+ GK++ IA ILGISR+TV+ I K R+ A Sbjct: 175 RVAESLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRG 234 Query: 241 VRNNIV 246 + + +V Sbjct: 235 LGSGLV 240 >gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 15/176 (8%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCS 132 P ++ + + D + L F T + + Sbjct: 47 HHPDIVLMDIRMPGTDGLAATSAICADPELAATRVLILTTFETEDYVAQALRAGASGFLG 106 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGR 189 + GL + ++ L+ + M + D H ELTGR Sbjct: 107 KDVTADTLLAGLRTVASGEALLSPAATR--TLITNFL--MSPAPDAHLAPPERLSELTGR 162 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E E + +EG+++ EIA IL +S TV +I M K + R+ + A + + Sbjct: 163 EREVMGLAAEGRSNTEIAEILTLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218 >gi|54026224|ref|YP_120466.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017732|dbj|BAD59102.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + L F + + + Sbjct: 50 DVVLMDVRMPEMNGLDAARAILAAGFDPPVRVLMLTTFDIDDYVYEALSIGASGFLLKDA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ ++ L A + + + LT RE E L Sbjct: 110 PAEELVRAVRVVAEGQALLAPTVTRR---LIAEVTSRRAASRKPAPELAALTPREREVLE 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L ++ TV +++ + K + R+ A+ A + +V Sbjct: 167 LVARGMSNTEIAEALFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGLV 217 >gi|307700594|ref|ZP_07637626.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|307614239|gb|EFN93476.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 233 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G T+ E+A L IS TV ++ +I+ K + R A+ +A N + Sbjct: 172 LTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENGL 231 Query: 246 V 246 V Sbjct: 232 V 232 >gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 391 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++G ++ E A L +S TV +YI+S +RK K R+ A+A A+R + Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389 Query: 246 V 246 + Sbjct: 390 I 390 >gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 319 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 218 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R R +A+ + ++ + L+ RE E L ++ G ++ EI Sbjct: 120 LLTAVRAAADGRTVLSPAVASRLVSRVRTPAAPAREP--LSVREREVLRLVARGTSNREI 177 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ + K K R+ A+A A I+ Sbjct: 178 AAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGIL 217 >gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp. subtilis str. 168] gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp. subtilis str. 168] gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp. subtilis str. SMY] gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yfiK gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis] gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp. subtilis str. 168] Length = 220 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%) Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAY 168 + L E + D ++ V + G M+L P+ +L + E L Sbjct: 88 ALIAEALEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGIN 147 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + + +LT RE+E L + G + EIA L I+ TV N++++I+ K Sbjct: 148 EIE-------KPNELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKL 200 Query: 229 ATKTRSGAIAYAVRNNI 245 A + R+ A Y+VR + Sbjct: 201 AVRDRTQAAIYSVRYGV 217 >gi|126433524|ref|YP_001069215.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] gi|126233324|gb|ABN96724.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] Length = 526 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E L +++G T+ EIA L IS T N++ K R A YA+ Sbjct: 458 RQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYAL 517 Query: 242 RNNIV 246 + ++ Sbjct: 518 EHGLL 522 >gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 244 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 18/223 (8%) Query: 24 SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83 + P+ S L+ P+ + M + E G +LFQ + D +V D Sbjct: 38 AAAPSLSVLIVDDHPMVREGLAGILMRSGIEVAGLGATGRQAIELFQSTRPD-VVLLDLR 96 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + + + + + R L E + + + Y D + + Sbjct: 97 LPDSSGVQVLREIRALDADARVVMLTSS--QADAEIYSAMSAGASGYLLKGIDGSTLVQQ 154 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L + GR + + L + Y + +L+ RE+E L +++G ++ Sbjct: 155 LRHVASGGRAMSPEALEKF---TDYLTSR------------KLSEREIEVLRLVAKGNSN 199 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ +T+ ++ S++ K R+ A+ A++ ++ Sbjct: 200 KEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRGLL 242 >gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum] gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 247 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 19/234 (8%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D L+ + +++Y G S+F + E+ V +W Sbjct: 14 DFLSESASAKSKDDVLLLFGKISQYFGFSYFAISGIPSPIERIDSYFVLGNWSVGWFDRY 73 Query: 91 ALSEKDKYYNVL-------------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 + ++ + + + + + + S+ Sbjct: 74 RENNYVHADPIVHLSKTCDHAFVWSEALRDQKLDRQSRRVMDEAREFKLIDGF-SVPLHT 132 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFE----LTGREVE 192 A ++ + + + L+AAY ++ ++ + + +T RE E Sbjct: 133 AAGFQSIVSFGAEKVELSTCDRSALYLMAAYAHSLLRAQIGNDASRKIQALPMITTRERE 192 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + W + GKT+ EIA ILG S T+ N I +I RK IA + R I+ Sbjct: 193 IIHWCAAGKTAIEIATILGRSHRTIQNVILNIQRKLNVVNTPQMIAESFRLRII 246 >gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L +++G+++ EI LG+S TV +++A I RK T R+ +A A+R Sbjct: 163 DLSSREIEVLRLVADGRSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAG 222 Query: 245 IV 246 I+ Sbjct: 223 II 224 >gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis 5-1] gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis 5-1] Length = 257 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N Sbjct: 194 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 253 Query: 245 IV 246 +V Sbjct: 254 LV 255 >gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426] gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 549 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------- 183 + F V R G++ + K ++ + LAA A M S H G D Sbjct: 424 VPFFVGDGRYGVLAVHIKKGREAKEAEVYMTALAAIGAMMI-SGKAHGGNDGTVNIDMLS 482 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE++ L + +G ++ EI+ L IS +TV N+I +I +K RS IA + Sbjct: 483 EQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 542 Query: 244 N 244 N Sbjct: 543 N 543 >gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24] gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans TK24] gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 72/223 (32%), Gaps = 14/223 (6%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ D L + +S + V + + + + P ++ + Sbjct: 1 MTIRVLLADDQALLRATFRILID---SSEDMDVVAEAADGRDAVELTRTHRPDIVLMDIR 57 Query: 92 LSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + D + + L F T + + + G Sbjct: 58 MPGTDGLAATAEICADPALRGTRVLILTTFETDEHVARALRIGASGFLGKDVTAEELLDG 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + + ++ L+ + + +D LT RE E +++GK+ Sbjct: 118 IRTVAAGDALLSAAATR--SLITRFLDSPDPRASPVPPEDLAALTAREREVTALVADGKS 175 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S TV ++ K + R+ +A+A R+ + Sbjct: 176 DKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 218 >gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 10/134 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D R L V + G LL P L DR A Sbjct: 91 VFAALRAGASGFMLKDVRPAQLVDAVHVVAGGDALLAPSATRRLLDRF----------AG 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + +LT RE++ L +++G ++ E+A L +S TV +++S++RK + Sbjct: 141 ELPGDERPLPDLRDLTERELDVLRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLR 200 Query: 232 TRSGAIAYAVRNNI 245 R A+ A + Sbjct: 201 DRVQAVVLAYDVGL 214 >gi|290954729|ref|YP_003485911.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260644255|emb|CBG67336.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+A + + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 137 R--LIADFARQRPAVRGKPALRLKRLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220 >gi|108797883|ref|YP_638080.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866977|ref|YP_936929.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] gi|108768302|gb|ABG07024.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693066|gb|ABL90139.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] Length = 526 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E L +++G T+ EIA L IS T N++ K R A YA+ Sbjct: 458 RQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYAL 517 Query: 242 RNNIV 246 + ++ Sbjct: 518 EHGLL 522 >gi|41409450|ref|NP_962286.1| hypothetical protein MAP3352c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398281|gb|AAS05902.1| hypothetical protein MAP_3352c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 523 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 9/139 (6%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW---------EIGLLAA 167 P GM +R + R RL + A Sbjct: 378 RGLAGPALGMPDRILAAAVCYQSGREPRPYREQLSEAEAARRLRGRVRCGELDPVAAEAV 437 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A + LT RE+E L ++ G ++ EIA L IS T N++ K Sbjct: 438 LHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAK 497 Query: 228 TATKTRSGAIAYAVRNNIV 246 R GA YA+++ +V Sbjct: 498 IGVSNRIGASMYALQHGLV 516 >gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 227 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D L + R+ G +LR L +L + Sbjct: 96 VFEAVKAGARGYLLKDAGADDLISAIRRVDEG--------ETLLRAELA-ASVLDEFSRA 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ + + ELT RE L +++G ++ EIAV LG+S TV N ++ I K Sbjct: 147 KSETPEHPEHRLSELTEREATILRLLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLN 206 Query: 232 TRSGAIAYAVRNNI 245 R+ A YA+R I Sbjct: 207 NRTQAALYALREGI 220 >gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 208 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V + LT RE+E L + G+++ EIA+ L I+ TV ++ +I+ K R+ A+ Sbjct: 137 VSNPQPESLTPRELEVLHLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAV 196 Query: 238 AYAVRNNIV 246 + AVR ++ Sbjct: 197 SIAVRQQLI 205 >gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 8/161 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L R ++ + L + T E I + + YC V R+ + Sbjct: 73 LPRLDGIAATQQIKAALPATHVVMLTSHQTETEIIAALSSGADAYCIKGASVERLLSAIA 132 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + +A + K + L+ RE+E L + +G ++ E Sbjct: 133 AAVDGAAYLDP-------QIARRVIDNLKPP-APTSNNANLSARELEVLKLMVDGLSNPE 184 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S NT+ ++ IM K A R A A+R+ +V Sbjct: 185 IAEKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 225 >gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + L L F + Sbjct: 50 DVVLMDIRMPGTDGIEATRTITADPALGEVKVLVLTTFEIDEYVAEAVRAGARGFIGKGA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ L+ +QA+ +++ + ELT RE E L Sbjct: 110 DPEDLLAAIETVAAGEPMLSAAA--TAALMGRFQAHAPRNWAKETERLAELTPREREMLV 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G T+D+I+ L +SR+TV ++ M K R+ + A + +V Sbjct: 168 LVASGLTNDDISERLQLSRHTVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218 >gi|225025132|ref|ZP_03714324.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC 23834] gi|224942093|gb|EEG23302.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC 23834] Length = 224 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 7/173 (4%) Query: 77 IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +VS P ++ + + + +L E + + M C Sbjct: 45 LVSQLAPDVVLLDLDMPVMNGREALAQILSSRPEQKVVMLTVSEDGENLVECMRLGACGF 104 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192 + L+ G+ D ++ ++A ++ + + LT RE+E Sbjct: 105 LL---KNINANFLIDAIGKAANGDNVFSPEMMACMVQSLIRPAQPATESALDTLTSRELE 161 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +++ G ++ IA + ++ +TV ++ +I+RK +R A YAV++N+ Sbjct: 162 VLRYLAVGYSNKIIAKRMDLAESTVKVHVQNILRKLELGSRVQAAVYAVQHNL 214 >gi|290957194|ref|YP_003488376.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260646720|emb|CBG69817.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 1089 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 7/168 (4%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCP-----VFHTLPENITPPAGMDNRYCSLTFDVA 138 +L R LS+ D + +V+ L P V H L E + G D+ ++ Sbjct: 911 AELRRAEGLSDPDTWSDVVTAFEPLERPYDLARVRHRLAEAL-LARGTDDEARDRATELL 969 Query: 139 RIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R+ + + L L +A LTGRE + L + Sbjct: 970 RLAAAVADHLGARPLADAVALLARRARLTLSRAPEPALAPADPVAALGLTGREHDVLRLV 1029 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + G+T+ +IA L IS T + ++++I+ K R A A A R + Sbjct: 1030 AVGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRVGL 1077 >gi|253991535|ref|YP_003042891.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638413|emb|CAR67035.1| transcriptional regulator of sqaz gene cluster [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782985|emb|CAQ86150.1| putative transcriptional regulator [Photorhabdus asymbiotica] Length = 236 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 139 RIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVE 192 + + K I + L + G+L K+++ K+ + L+ REVE Sbjct: 122 HGERSIFSVARKEGPISHNEILNKAGMLGILANECIKTFNNLKNKEDKIIVPTLSTREVE 181 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + W EGKTS EIA IL IS TVN +I +IM K Sbjct: 182 VIRWTCEGKTSAEIANILDISTRTVNFHINNIMEKLVVPN 221 >gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 235 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173 L + P AG + + + G ++ + ++ + + E G + Sbjct: 107 RLEGGLLPFAG-----IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + LT RE CL +G TS+EIA LG+S +TVN Y+ S K R Sbjct: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 Query: 234 SGAIAYAVRNNIV 246 AIA A+R + Sbjct: 222 IQAIAKAIRFGYI 234 >gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 11/175 (6%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNRY 130 +V+ P ++ + + D + T++ + +++ P Y Sbjct: 46 LVAELAPDVVLMDLRMPRVDGVEATRRIRSEHPGTQVVVLTTYADDDSLFPALRAGARGY 105 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + D I + + + + + LL A + LT RE Sbjct: 106 LTKDADGDEIVRAIQDVVAGRAGLSP--VVQRRLLEQVTA---EPPPTGPRLPDGLTARE 160 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E LT I+EG + +IA LGIS TV +I ++ K R+ A+ YA R + Sbjct: 161 GEVLTLIAEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYREGL 215 >gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 7/164 (4%) Query: 87 VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR L + + +R P L F + + + + + Sbjct: 37 VRMPRLDGVEATRRIHERAGAPRVLILTTFDLDEYAFSALRAGASGFMLKDVPPSELVAA 96 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + + ++ L A M + + LTGRE E + +++G + Sbjct: 97 IRAVHSGDAVVAPSTTRR---LLDRFAPMLPGTGPATHPELDRLTGREQEVMRLVAQGLS 153 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L +S TV ++ ++ K + R + A IV Sbjct: 154 NGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGIV 197 >gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 238 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 5/170 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + L + + + Q + I Y Sbjct: 47 DVVLLDMRMPGLNGLELLRRLRAAH--QSMPIAMLTTSAEERDVIDSLQSGAQGYLLKDM 104 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + L + ++ + G+LA V G +LT RE E L Sbjct: 105 EPDALIAALGEIVQGRTVVASE---LTGVLARAVRGESTPVPVVSGGAADLTPREQEILC 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++EG+++ IA LGIS TV ++ +I+RK +R A AV + Sbjct: 162 HLAEGQSNKTIARELGISEGTVKLHVKAILRKLDVHSRVEAAVIAVERGL 211 >gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] Length = 214 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + + + +LT REV Sbjct: 99 LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTIPEQLAQLTEREV 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E L I G + EIA L I+ TV N++++++ K + R+ A YAVR + Sbjct: 157 EVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210 >gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] Length = 273 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 11/187 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++ L +V SD L K + L +F + I + Y Sbjct: 86 QELLPDVVISDVMMPCCDGYGLLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDDY 145 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA-------AYQANMFKSYDVH 179 FD + + + +L + +IG +A + A ++ Sbjct: 146 IPKPFDPDELVARVRNAVRRQERLLAEAARFADADIGQMARQITEIRSLLATGGQAKKPA 205 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 D T RE L ++EG + EIA L S V Y++ + KT T +R+ + Y Sbjct: 206 GSTDLVFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFIKTGTASRTELVRY 265 Query: 240 AVRNNIV 246 A+ + +V Sbjct: 266 ALEHGLV 272 >gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 210 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 18/173 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLT 134 P +V + L D Q EL P H E + + + YC Sbjct: 47 PDLIVMDIGLPRLDGIGATKQIKEEL--PNIHVVMLTSHTQQTEVVAALSSGADAYCVKG 104 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193 + R+ + + L+A + K+ + L+ RE+E Sbjct: 105 ASLDRLLAAIDAAKDGATYLDP-------LIARLVLSNLKAPIPQQNLNISNLSERELEV 157 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I EGK+++EIA L +S NT+ ++ IM K A R A A+R+ IV Sbjct: 158 LKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGIV 210 >gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR [Mycobacterium abscessus ATCC 19977] gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR [Mycobacterium abscessus] Length = 218 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 5/160 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 ++ M+ E + + Q P L F + + + Sbjct: 61 MKQMSGIEAIRLLHAAQGPPALALTTFDDDELLSGALRAGAAGFILKDSPAEELVRAVHA 120 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + + + L AY V +LT RE++ L I+ G T+ EI Sbjct: 121 VARGEAYLDPAVTSRV--LNAY---RRAPAAVSGDAQDKLTARELDVLALIASGATNSEI 175 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++I I K + R+ AI YA + IV Sbjct: 176 AEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIV 215 >gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 227 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V I G LL P +I R + E L Sbjct: 97 VYDALRAGASGFLLKDASSDQLAEAVRVIAAGDALLAP---VITRKLIAEFSRLDD---- 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +LT RE E L I++G ++ EIA L ++ TV ++ I+ K + Sbjct: 150 --RPRAPLKERIGDLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLR 207 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A + +V Sbjct: 208 DRTQAAVFAYESGLV 222 >gi|302519560|ref|ZP_07271902.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302428455|gb|EFL00271.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 234 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 6/146 (4%) Query: 102 LQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 +RP L V + I Y + + + + + +G + RL Sbjct: 94 TERPVRFLALSVSDAAEDVIGVIRAGSRGYVTKAINGTELVAAIHRVN-EGDAVFSPRLA 152 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +L A+ N D K LT RE + L I+ G + EIA L IS TV ++ Sbjct: 153 GF-VLDAFSNNTVPPVDEELDK---LTQRERDVLRLIARGHSYKEIAKELFISVKTVESH 208 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +++++RK R +A +V Sbjct: 209 VSAVLRKLQLSNRHELTRWAAARRLV 234 >gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 73/201 (36%), Gaps = 16/201 (7%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFH 114 VG + L L QEQ+ D +V D+ + + E + L T++ H Sbjct: 38 VGEARNGLEAIKLVQEQRPDIVV-----MDISMAQLDGLEACERIRALAPGTQVLMLTMH 92 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-- 172 E + + +G L L + L+ AY A Sbjct: 93 ESEEYFLQSLKKGAAGYIVKKAAPAELCNAVRTIAQGGAFLYPGLAK-ALIRAYVAPQNP 151 Query: 173 ------FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 K + LTGRE+E L ++EG T+ EIA L IS TV + +++M Sbjct: 152 PEQPGSLPPQRAELDKALQTLTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMM 211 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K + + +A+ ++ Sbjct: 212 EKLGLHDITQLVRFALHYGLI 232 >gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 218 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGR 189 +R G+M P R++ + + + L+ D+ E L+ R Sbjct: 95 VRTGVMGCLPL-RLLPQQIVSAVELVVGAGLLCLPRPDLKTSLGTETGESKGTFSILSRR 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L ++ ++ EIA L +S +TV ++ +I RK + R+ A+A A + +V Sbjct: 154 EEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTEAVAAAYQLGLV 210 >gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] Length = 214 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKQLQPEIILMDIRMPRMNGVEGTRLVREKFPYIKVLMLTTFSDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + K +LT REV Sbjct: 99 LKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR + Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210 >gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKSYDVHWG 181 G Y + F + G + G I L G A A+M + + Sbjct: 121 GRKLSYSGIAFPIRLGAQGNGYVVFAGSYIDAPAEQVLDLHGRCAQVMADMLAADERRLF 180 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE+ CL +G S+EIA +G+S +TVN Y+ + K + R AIA A+ Sbjct: 181 KGESLSDREIACLQMAGDGYISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAI 240 Query: 242 RNNIV 246 R + Sbjct: 241 RLGYI 245 >gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 201 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L P + F + Y Sbjct: 37 DVVLMDMRMPVMSGLEALQVLSRQEQL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 94 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 +A++ + + G ++ LL+ + ++ V + LT RE E L Sbjct: 95 TLAQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 150 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA LG++ T+ N++++I+ K + R+ A+ A +V Sbjct: 151 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 201 >gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 218 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 43 VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + + + +LT REV Sbjct: 103 LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 160 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR I Sbjct: 161 DILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 214 >gi|256830668|ref|YP_003159396.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579844|gb|ACU90980.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 335 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 14/234 (5%) Query: 16 DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRM--YALTEYVGASHFLLVRWDLFQEQK 73 D+ + V+ M+ + + L++ G S E Sbjct: 103 DKVTSIRVNTGRKPGQAGPAMLGIVGDDPLLNDLLAARLSQETGVSCSHSPSLPRILETA 162 Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 + D M++ E + N P +PE+ + N Sbjct: 163 RPDLTLLD-----CTGMSMEELLREANGEDSPFMSTSVALFNVPEDRSLELEAINSGIRG 217 Query: 134 TF----DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 F + G+ + R+ + L + N +L+ R Sbjct: 218 IFFRNSPFKLMVKGVSAMLDNELWFSREAMSAFLL---GKQNRPAELSAPENGQADLSQR 274 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 E E L ++ G T+ +IA L +S NTV ++I +I +K R A +A R+ Sbjct: 275 EQEILLMLAAGATNKDIAQKLFLSLNTVKSHIYNIYKKIDVPNRLQASLWAARH 328 >gi|329936313|ref|ZP_08286078.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304109|gb|EGG47990.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + +G++ + D L + + + +S H +LT RE L I+EG ++ Sbjct: 133 LRRLERGKLPIPDTLARL-----FIRHAGRSRGTHRSPRVQLTPREQAVLGLIAEGLSNR 187 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA GIS + V ++A+++ K R+ A++ A++ ++ Sbjct: 188 MIAHRFGISEHGVKRHVANLLAKFNCSNRAQAVSVALQQGLL 229 >gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 227 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 YC ++ + L + EI + + Sbjct: 97 LIEAGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIRSSIESSQSQSPEQNFTKS 156 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D LTGRE+E L+ +++GKT+ EIA L I+ TV ++ +I+ K R A+ A+ Sbjct: 157 -DHPLTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVAL 215 Query: 242 RNNIV 246 + ++ Sbjct: 216 QKRLI 220 >gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P I R + E L A Sbjct: 90 VYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPG---ITRRLIAEFSRLDA---- 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + ELT RE E L I++G ++ EIAV L ++ TV ++ I+ K + Sbjct: 143 --RPRTPLRQRVGELTERETEVLALIAQGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A + +V Sbjct: 201 DRTQAAVFAYESGLV 215 >gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 229 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 29/208 (13%) Query: 67 DLFQEQKLDSIVSS------DW-----PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112 D QE V+S DW P ++ + + + D Y + + P PV Sbjct: 20 DYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVDGYQFLKQLREDPRFQTVPV 79 Query: 113 FHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF----------PKGRIILRD 157 + +T + Y FD + + L I + + Sbjct: 80 IFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLLSRRLTKATGEESETIDIAE 139 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 +I + A +LT RE L ++EG + EIA L S V Sbjct: 140 LANQIAQIKALLTQRSAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVRNV 199 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 Y++ + KT T +R+ + +A+ + + Sbjct: 200 EKYVSRLFSKTGTNSRTELVRFALEHGL 227 >gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L+ IS+GK++ EIA +L ++ NTV ++ I+ K R+ A+ A++ Sbjct: 150 KLSERELEVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKLQANDRTQAVVIAIQRG 209 Query: 245 IV 246 ++ Sbjct: 210 LL 211 >gi|324991970|gb|EGC23892.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 210 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606] Length = 319 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|171057768|ref|YP_001790117.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775213|gb|ACB33352.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 316 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT RE E L W+++GKT+ +I ILG S TV ++ + K +TR+ A A A+ Sbjct: 251 FRLTPREAEVLYWLAKGKTNRDIGEILGSSAATVKKHLEHVYEKLGVETRNAAAAVAI 308 >gi|1429258|emb|CAA67717.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214 + ++ A + F++ ++ T RE+E L ++ G +++IA L +S Sbjct: 126 EAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV ++ I++K + R+ A+ +A+RN IV Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] Length = 222 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVECLTWISEGKTS 203 LF I + + LL+ ++ D + LT RE E L I+EGK+S Sbjct: 113 LFSAIDTIRQQGTYISPLLSPQLKDLLLRKYREDRSQFPEDPLTKREKEILRLIAEGKSS 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EI +L IS TV ++ A++MRK + + + YA++ Sbjct: 173 KEIGAVLFISSRTVEHHRANMMRKLGCRKIAELVRYAIQKG 213 >gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 314 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 F+LT RE E L W +GKT+ +I ILG S T+N ++ + K +TR+ A A A Sbjct: 252 FKLTRRESEVLYWAMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALA 308 >gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 235 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G LT RE E L ++ G+++ EIA L ++ TV +++S+ RK R+ A Sbjct: 139 PAPGPVAALTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAA 198 Query: 238 AYAVRNN 244 YAV + Sbjct: 199 LYAVTHG 205 >gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] Length = 214 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKQLQPEIILMDIRMPRMNGVEGTRLVREKFPYIKVLMLTTFSDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + I ++ + G ++ +D +I + K +LT REV Sbjct: 99 LKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I G + EIA L I+ TV N++++++ K + R+ A YAVR + Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210 >gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1] gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1] Length = 319 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] Length = 225 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 14/221 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D R++ +D + + AL S F +V + ++ +D P ++ + Sbjct: 6 DQNIRIVLIDDHTLFRSGIKALLAR--QSGFEVVGEASDGLTGIKTVRQTD-PDVVLLDL 62 Query: 91 ALSEKDKYYNVLQ----RPTE--LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + + + Q RP + + V + + + + + + + Sbjct: 63 DMPVMNGRETLAQILSVRPQQCVVMLTVSEDGDDLLECMRLGAHGFLLKNINADFLTESI 122 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + + Q+ + + V + ELT RE+E L +++ G ++ Sbjct: 123 RNAAEGNNVFSPEMMANM-----VQSLIKPAKPVEENRLDELTARELEVLGYLAAGHSNK 177 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV Y+ +I+RK +R A YAV++ + Sbjct: 178 IIARSLDLAESTVKVYVQNILRKLELTSRVQAAVYAVQHKV 218 >gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017] Length = 222 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 +S K L F + + A + YC + D ++ + L+ Sbjct: 66 GISATQKIKATCPDIRVLALSAFGKDNQVVGMLAAGADGYCLKSIDWQQLLAVIRLIQGG 125 Query: 151 GRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 G + +L + L+ RE E L ISEG ++ EIA Sbjct: 126 GTYLDPQIAHKLASMLKSANTPTTAPAHRQTAPATVLSDREREVLQLISEGCSNQEIANQ 185 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S T+ +Y+ I+ K + R A A AVR ++ Sbjct: 186 LYLSLGTIKSYVRMILNKLSVDDRVQAAAKAVREGLI 222 >gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 211 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T A + G+ + + RL + Sbjct: 72 PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGIRRVAGGDAVFSP-RLAGF-V 129 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + LT RE+E L ++ G T EIA L IS TV + +++ Sbjct: 130 LDSFTGRSPVPEPPLDPELDSLTPRELEVLRLLARGYTYREIAETLFISVKTVETHASNV 189 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RKT R+ +A R I Sbjct: 190 LRKTQQSNRNALTRWAHRRRI 210 >gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL ++ + K+ E L+ RE + L ++ G TS EI L IS TVN +I Sbjct: 179 LLNKFEQPQNNVQTLQENKNKEKLSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIK 238 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +I RK +TR+ A+++A + Sbjct: 239 NIYRKLNVRTRAQAVSFAASRGL 261 >gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 234 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 5/135 (3%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D L V + G ++ P+ + RL E + A Sbjct: 96 FSGLQAGASAFLLKDVAPEELVHAVRLVASGDAVVAPR----VTARLLETYVRNAGHGVP 151 Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ + + LT RE E L ++EG ++ EIA +S TV ++ I+ K + Sbjct: 152 GQAAEPKRDPLLDDLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLR 211 Query: 232 TRSGAIAYAVRNNIV 246 R A+ YA +V Sbjct: 212 DRVQAVVYAYETGLV 226 >gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 215 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 + R++ +D + +L E VG + V +L + K D ++ Sbjct: 1 MIRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAENGKVAVELALKLKPDVVLMD------ 54 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 VR + ++ ++ E+ V T ++ M+ Y + Sbjct: 55 VRMPIMDGVAAMRSLAEQQPEIKVLVLTTFDDDEYITQAMESGAKGYLLKDTPSDELAQA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ +G L L+E + A + + G +LT RE+E L I +G ++ Sbjct: 115 IRAVY-QGYTQLGPGLFEKVMAA---KSKPSRDEPLPGYLQDLTPRELEVLRLIGKGYSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EIA L IS TV N+++SI+ + + R+ A Sbjct: 171 REIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 207 >gi|302558898|ref|ZP_07311240.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476516|gb|EFL39609.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 237 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%) Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 +RP L V + I G Y + T + + + + Sbjct: 98 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP----- 152 Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D + LT RE E L I+ G EIA L IS TV + Sbjct: 153 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 210 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 211 HVSAVLRKLQLSNRHELTRWATARRLV 237 >gi|284030307|ref|YP_003380238.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809600|gb|ADB31439.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 213 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 56/155 (36%), Gaps = 8/155 (5%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPK 150 L + E V T ++ + + LT D R+ IG L Sbjct: 63 LDGVQATARLTADNPEAAVLVLTTYADDASIAQALRAGARGYLTKDAGRVEIGAALRATA 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 D L+A G LT RE E L I++G ++ EIA +L Sbjct: 123 AGQSTFDPEVARRLVAGL-------SPAPAGSKDGLTARETEVLRLIAQGLSNGEIAGLL 175 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I TV +I + K + R+ A+ YA R+ I Sbjct: 176 FIGEATVKTHINNTFAKIGARHRAEAVRYAYRHGI 210 >gi|71068204|gb|AAZ23059.1| probable putative response regulator [Streptomyces fradiae] Length = 227 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 17/208 (8%) Query: 55 YVGASHFLLVRWDLF------QEQKLDSIVSSDWPFDLVRCMALSEKDKYYN-------- 100 G + L + D+ ++ + S P ++ + + E D Sbjct: 15 RAGFAALLTAQDDIDVVGEAPDGKRGVEVSRSVHPDVVLMDVRMPEMDGLAAARALLDPP 74 Query: 101 --VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 V+ RP L F + + A + + ++ ++ Sbjct: 75 PGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSV 134 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + A Q + + LT RE E L I+ G ++ EIA L ++ TV Sbjct: 135 TRRLIAEFAKQRPATARGNPALRLN-GLTPRETEVLGLIARGLSNQEIAGRLVLAEQTVK 193 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++ K + R+ A+ +A + +V Sbjct: 194 THVGRVLAKLTLRDRAQAVVFAYESGLV 221 >gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 219 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 18/217 (8%) Query: 33 LARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 + +++ +D + AL E VG + + DL + D +V D + Sbjct: 1 MIKVLLVDDQNLIRQGLRALLELESDIEIVGEAENGKIAIDLIPQFHPD-VVLMDMRMPI 59 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143 + +A ++ + + + V T ++ A + N Y + + Sbjct: 60 MDGVAATQ-----EIQRNFPSVKVLVLTTFDDDEYVKAALQNGAMGYLLKDTPSEELAVA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + + + + LL +Q+ + +LT RE E L I+ G + Sbjct: 115 IRAVEKGYTQLGPGIVKK--LLVQFQSTPNHTPPAPTNL-ADLTPREKEVLRLIAAGANN 171 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EIA L IS TV N++ +I+ + + + R+ A A Sbjct: 172 KEIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208 >gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium petroleiphilum PM1] Length = 237 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 27/236 (11%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 ++ + + + +G S +V + + + + P Sbjct: 6 FQSVLEARNRDEFRGEVVRFAKRLGFETVSAITVVDHPVGD---TEFVAIDNAPDAYKDA 62 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + + + V+Q P+ ++ AG + + + R I L L P Sbjct: 63 IEDPKAGQLDPVMQHCKRQSVPII--WDQSTYVSAGQGSMWEAQARFGFRTGICLALHMP 120 Query: 150 KGR----------IILRDRLWEIGLLAAYQANMFKSYDVHWG---------KDFELTGRE 190 +GR + +DR L+A Q + D + +LT RE Sbjct: 121 EGRHFVIGVDRDQALPKDRGEVTRLVADLQLFAVHAQDTAMRVLVPERLQLERPKLTPRE 180 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ L W +GKT+ E+ I+GIS T +I + M K A + A+ A+R ++ Sbjct: 181 LDSLRWTMDGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALRLGLL 236 >gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] Length = 217 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 D ++ +GL + + RD L + L Y ++ + K + ELT RE++ L Sbjct: 110 DFDKVMMGLKGILNGENWLSRDILNQ---LIGYLLSLNNTVGELETKLEMELTRRELQVL 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + + +G ++ +IA L +S +TV +++ SI RK K R AI +A RN Sbjct: 167 SALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215 >gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] Length = 213 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 17/178 (9%) Query: 78 VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V P ++ + + + V ++ + + T ++ ++ + Y Sbjct: 39 VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFNDSELIFEALEQGASGYL 98 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187 + I ++ + G ++ +D + A K V E LT Sbjct: 99 LKDMETDAIAQAILTVHSGGVVLPQD-------ITAQIIEELKKTKVAVCNPPEQLKQLT 151 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 REV+ L I G + EIA L I+ TV N++++++ K + R+ A YAVR + Sbjct: 152 EREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 209 >gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 257 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 140 IRIGLMLLFPKGRIILRDRL----------WEIGLLAAYQANMFKSYDVHWGKDFEL-TG 188 R F + L +R + L+ + +L T Sbjct: 139 GRTTCFFTFTQISAALSERHAYFLELLMPHMHMALVRMLFHERHHKQGAVGERSRKLITD 198 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE E L + GK++ EIA +L IS TV N+I I++K R+ A+A A+ I Sbjct: 199 RETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDVNNRAHAVAKAMALKI 255 >gi|227832318|ref|YP_002834025.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183824|ref|ZP_06043245.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453334|gb|ACP32087.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] Length = 219 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 2/156 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L+ + N RP L V + I Y + + ++ + Sbjct: 64 GLAVINATANQPARPVFLALSVSDAAEDVIALIRAGARGYVTKNISGPDLAEAVVQV-HS 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209 G RL L A + + + LT RE+E L ++ G T EI Sbjct: 123 GDAYFSPRLAGFVLDAFASGSPAPEPEEGQDPAVDALTRRELEVLRLLARGYTYREIGKQ 182 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV + ++I+RKT R +A ++ Sbjct: 183 LFISVKTVETHASNILRKTQQSNRHQLTRWATSRDL 218 >gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 319 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 268 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 169 QANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Q F+ + G D +T RE+E L+W +EGKT ++I+V++ IS+ TV ++ S K Sbjct: 189 QQRAFEMHHQDEGIDINTITKREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYK 248 Query: 228 TATKTRSGAIAYAVRNNIV 246 R A+A A+R ++ Sbjct: 249 LGALNRIHAVAKAIRAGLI 267 >gi|114328502|ref|YP_745659.1| LuxR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316676|gb|ABI62736.1| transcriptional regulator, LuxR family [Granulibacter bethesdensis CGDNIH1] Length = 306 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 +++R + I + I++R + + Sbjct: 196 VESRLSPEGTGSREVEIVFFGTSREDEILMRLIINDPAEEQTILHQRLP----------- 244 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +T RE E L WI GK + +IA ILG+S TVN ++ I K + R+ A A ++ Sbjct: 245 VTAREAEVLLWIGRGKQNRDIADILGLSPRTVNKHLEQIYTKIGVENRAAAAAVVMK 301 >gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 79/219 (36%), Gaps = 17/219 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 14 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 74 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 133 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W EGK+S +I+ ILG S+ TV ++ + K T R Sbjct: 194 AWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232 >gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 247 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 79/217 (36%), Gaps = 24/217 (11%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-- 108 A+ Y+ S F ++ Q+ ++S+ P ++ + + D Y L + +L Sbjct: 32 AVQAYLEDSGFEVIPAANAQQAL--QLLSTAQPQLIISDIMMPGMDGY-QFLAQLRKLEP 88 Query: 109 --FCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR--- 158 PV + +T + Y FD + + L + R Sbjct: 89 YSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIERSRAASPSEVVA 148 Query: 159 ---------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 L E L A A + ELT RE + L ++EG + EIA Sbjct: 149 RELASIRALLSERTLATATPAQTSAPTPLPPPIKVELTPREQQVLEKVAEGLMNKEIAKQ 208 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L S V Y+ ++ KT T +R+ + YA+ ++ Sbjct: 209 LQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 245 >gi|311896491|dbj|BAJ28899.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 5/153 (3%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 E + L V + I G Y + T + + + G Sbjct: 78 EVLRRSAGADGVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVKAIFRIA-DGDA 136 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + RL +L A+ A D + LT RE E L I+ G EIA L IS Sbjct: 137 VFSPRLAGF-VLDAFAATDTPPVDEDLDR---LTQREREVLRLIARGYAYKEIAKQLFIS 192 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++++++RK R +A +V Sbjct: 193 VKTVESHVSAVLRKLQLSNRHELTRWATARRLV 225 >gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 229 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 87/214 (40%), Gaps = 20/214 (9%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---E 107 ++++Y+ + ++ D + SI+ + +V + + + Y V + Sbjct: 17 SISDYLELCGYSVLTAD--DGENALSIIQQEHLDLMVTDIIMPRMNGYELVRRVRQNIEF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV E I + Y F++ + + L + +II + Sbjct: 75 RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAVRNLLERSQIIQSEYCLSS 134 Query: 163 GLLAAYQ-ANMFKSYDVHWGKDFE---------LTGREVECLTWISEGKTSDEIAVILGI 212 + + + +S + + ++ RE E L ++ G ++ EI L + Sbjct: 135 QITGGFSPDDKTRSLSIPRTETLNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYL 194 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV Y++S++RKT++ R+ + +A++++IV Sbjct: 195 SPRTVEKYVSSLLRKTSSNNRAELVRFAIKHDIV 228 >gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 228 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 50 DVVLMDIRMPGTDGLAATRTITADPALAAVRVIMLTTFEVDEYVVGALRAGASGFLGKGA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190 + + + ++ ++ GL+A + A D + LTGRE Sbjct: 110 EPEELLNAIRIVAAGEALLSPTATK--GLIARFLAQGGDGADEQRAAAYGERLNALTGRE 167 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++DEI L +S TV ++ M K + R+ + A + +V Sbjct: 168 REVLVLVAGGLSNDEIGERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223 >gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99] gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA Sbjct: 178 LDLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAI 237 Query: 244 NIV 246 ++ Sbjct: 238 GLI 240 >gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU] gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter baumannii 1656-2] gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 319 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|91787753|ref|YP_548705.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696978|gb|ABE43807.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 270 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE + + W++ GKT+ EI IL IS TV N++ I +K R+ A++ R Sbjct: 209 LSERETQIMAWVAMGKTNSEIGTILNISGFTVKNHMQRIFQKLNVFNRTQAVSKVTR 265 >gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 220 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 20/169 (11%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 M P L V + I Y + D + + + Sbjct: 58 MPDGGGLAVITRAPGPQYLALSVSDAAEDVIALIRAGARGYVTKNIDGPELAEAITQVHG 117 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------------LTGREVECLTW 196 LA + + F S V E LT RE+E L Sbjct: 118 GDAYFSP-------RLAGFVLDAFASGGVVEDPAGEPEKAGEDEAVVDKLTRRELEVLRL 170 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G T EIA L IS TV + ++++RKT T R +A + Sbjct: 171 LARGYTYKEIASELFISVKTVETHASNVLRKTQTSNRHQLTRWASERAL 219 >gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] Length = 206 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 ++ L+ RE+E L+W + GKTS EIA ILG+S+ TV+ +I K TR Sbjct: 134 PQQRTPQNVTLSEREIEALSWSARGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVE 193 Query: 236 AIAYAVRNNIV 246 A+ A + Sbjct: 194 AVVRAATEGFI 204 >gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4] gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4] Length = 214 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE+E L I G+++ EIA L I TV ++++I++K A + R+ YA R Sbjct: 150 HEELTPRELEVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHR 209 Query: 243 NNIV 246 + +V Sbjct: 210 HGLV 213 >gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 215 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 13/135 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L D+ L V R +G + L + L A Sbjct: 93 VFGALEAGACGILLKDSSMTDLVEGVRRAALG-------------EGLVDASLTRRVIAE 139 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++C+ + +G +++EIA L + +TV +++S M KT T Sbjct: 140 FTRRKSIFTSSSEVLTPRELDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTH 199 Query: 232 TRSGAIAYAVRNNIV 246 R + +A RN +V Sbjct: 200 NRVQLVIWAFRNGVV 214 >gi|89902166|ref|YP_524637.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346903|gb|ABD71106.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 328 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE E L W+ +GK + +I ILG S TV ++ + K +TR+ A A+ Sbjct: 259 FKLTPREAEVLYWVVKGKINRDIGDILGSSPMTVKKHLEHVFAKLGVETRTAAAGMAMSR 318 >gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 254 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 36/53 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E L WIS GKT+ EI++ILGIS NTV N++ASI+ K R A A Sbjct: 198 LTSREREVLNWISSGKTNGEISMILGISPNTVKNHVASILGKLNAPNRLAATA 250 >gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0101] Length = 248 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 10/186 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++ L +V SD + L K + L +F + I + Y Sbjct: 62 QELLPDLVISDVMMPRLDGYGLLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDY 121 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKD--- 183 FD + + + + +L++ +IG +A + K Sbjct: 122 IPKPFDPDELVARVRNVVRRQERLLQEAARFADADIGQMAKQITEIRSLLATGGSKKQSA 181 Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA Sbjct: 182 AVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYA 241 Query: 241 VRNNIV 246 + + +V Sbjct: 242 LEHGLV 247 >gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624] gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624] Length = 319 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +LA+Y ELTGRE++ L ++ G ++ EIA L ++ TV ++ + Sbjct: 132 VLASY---RRFGRPAPANAPGELTGRELDVLRLMARGASNREIAGRLCLAETTVKTHVGA 188 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K + R+ AI +A + IV Sbjct: 189 IFGKLGARDRAAAIVFAYDSGIV 211 >gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans] gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans] gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans] gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans] gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans] gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans] gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans] gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|316935504|ref|YP_004110486.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603218|gb|ADU45753.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 309 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 +L L + + +F LT RE E L W+S+GKT+ +IA ILG+S TV Sbjct: 219 KLGPNEFLLRLARDTATEAPTQFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTV 278 Query: 218 NNYIASIMRKTATKTR 233 + ++ I K + R Sbjct: 279 DKHLEQIYAKLGVENR 294 >gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 244 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 38/226 (16%) Query: 59 SHFLLVRWDLFQEQKLDSIVS-----------SDWPFDLVRCMALSEKDKYYNVLQRPTE 107 +++ R + + + +V S++P D V+ + V+ + Sbjct: 16 KNYIQRRIKAYGDLRYSYLVMNKKTPLHPTIISNYPLDWVKKYKKNSYHLIDPVILTAKD 75 Query: 108 LFCPVF--------HTLPENITPPAGMD----NRYCSLTFDVARIRIGLMLLFPKGRIIL 155 P ++ + N Y + D + L + I Sbjct: 76 KVAPFAWDDNSVINKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNGSDDSIS 135 Query: 156 RDR--------------LWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200 D L +L YQ+N K+ + + + + + RE E L W S G Sbjct: 136 FDESIEINKEKIQMLLILTHEKMLGLYQSNSDKNENRNPKIERDIFSPRENEILYWASVG 195 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 KT EI++ILGI R+TV +I +++RK AI + ++ Sbjct: 196 KTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] Length = 261 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N Sbjct: 198 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 257 Query: 245 IV 246 +V Sbjct: 258 LV 259 >gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294] gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056] gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058] gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059] gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294] gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 319 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E + W+ GKT+ +IA IL +S TVN ++ + K + R+ A+A+ Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310 >gi|254393044|ref|ZP_05008206.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706693|gb|EDY52505.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA Sbjct: 82 HADVLEAVKSGATGYLLKSASTEELIDAVRRTADGDAVFTPGLAGLV---LGEYRRLAGE 138 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + K LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 139 PA---PTPGGPEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 196 QLHNRVELVRYAIERGL 212 >gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9211] gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9211] Length = 90 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 42/74 (56%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 1 MFSGDFANSGQMSLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSKN 60 Query: 233 RSGAIAYAVRNNIV 246 R + +A+ + + Sbjct: 61 RVALLNWAMDHGKI 74 >gi|326331829|ref|ZP_08198116.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1] gi|325950326|gb|EGD42379.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1] Length = 973 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 R+ L+ L E+ L A + LT RE E LT ++ G+++ EI Sbjct: 881 TARRLGLQPLLDELRSLGATAVKQQPATSTA------LTPRESEILTLVAAGRSNGEIGK 934 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV+ ++++I+ K +R+ A A A R ++ Sbjct: 935 QLFISTKTVSVHVSNILGKLGAGSRTEAAAIARRQQLI 972 >gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei] Length = 232 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 17/219 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 14 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 74 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 W EGK+S +I+ ILG S TV ++ + K T R Sbjct: 194 AWACEGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232 >gi|323358243|ref|YP_004224639.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323274614|dbj|BAJ74759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 222 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + + L V + G LL P+ + R G A++ Sbjct: 94 FAALSAGASGFLLKNAGPEELVSAVRIVGAGDALLAPEVTRRVIARFASGGAPEP-AASV 152 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT RE E L ++E ++ EIA L I TV +++++++K + Sbjct: 153 RPPLSLAE----PLTERESEVLKLVAEALSNAEIAARLFIGEATVKTHVSNVLQKLGARD 208 Query: 233 RSGAIAYAVRNNI 245 R A+ A R+ + Sbjct: 209 RVQAVVLAHRHGL 221 >gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 +P +L + + +L +Q D LT RE + L +++G T+ +IA Sbjct: 124 YPINESLLNPTIAQR-VLRNFQE--LAEDDDGLDVVTPLTQRERQILIRVTDGLTNKQIA 180 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS T+ N+I++I+RK R+ A A+R + Sbjct: 181 TELKISEQTIKNHISAILRKLNANDRAHAAVLAIRRGYI 219 >gi|282861398|ref|ZP_06270463.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564056|gb|EFB69593.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 226 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D + L V + G LL P+ + RL IG A + + Sbjct: 92 VYEALAAGASGFLLKDATFPELLHGVRVVARGHALLAPE----ITQRL--IGEFARQRIS 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V LT REVE L I+ G ++ +IA L I+ +TV +I + K + Sbjct: 146 CPPDRSVD-----GLTAREVEVLVLIARGLSNADIAARLSITDHTVKTHINRLFAKMGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 201 DRAQAVILAYELGLV 215 >gi|264678688|ref|YP_003278595.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262209201|gb|ACY33299.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 223 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 76/185 (41%), Gaps = 19/185 (10%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 L++ +L + LD + V+ + +S ++ VF + Sbjct: 58 LMIDLNLGDGEGLDLLELVQGTHPHVQSIIVSVTERDEK-----------VFQAFEKGAV 106 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + V ++ G + P + + L++ Q + + + Sbjct: 107 GYLLKNSWFGDYAQAVLQVANGGASITPSLAKKI------LSLVSRSQTYVVPASN--LS 158 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ +L+ RE+E L I+ G +S EI+ L IS TV+ ++ ++ RK KTR+ A+ A Sbjct: 159 KEEKLSEREIEILKLIACGYSSPEISTQLKISTMTVSTHVKNMYRKLQAKTRAHAVKAAS 218 Query: 242 RNNIV 246 ++ Sbjct: 219 LRGLI 223 >gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 781 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 40/81 (49%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AAY + LT RE+E L + EG T ++A L +S TVN ++ SI+ Sbjct: 700 AAYALEEGPRGEERGPAGAPLTPRELEVLRLVGEGMTDAQVAGRLFVSTRTVNAHLRSIL 759 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK ++R+ A+ A ++ Sbjct: 760 RKLGVRSRAAAVRLAQERGLL 780 >gi|326776281|ref|ZP_08235546.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656614|gb|EGE41460.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D + L V + G LL P+ + RL I + + Sbjct: 92 VYDALTAGASGFLLKDATFPELLHAVRVVAGGHALLAPE----ITGRL--IAEFTRQRVS 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V LT REVE L I+ G ++ +IA L I+ +TV +I + K + Sbjct: 146 APPPRSVD-----GLTAREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 201 DRAQAVILAYERGLV 215 >gi|329940979|ref|ZP_08290259.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300273|gb|EGG44171.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 255 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 4/138 (2%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LAA Sbjct: 118 HADVLEAVKSGATGYLVKSASTEELVDAVRRTAAGDPVFTPGLAGLV---LGEYRRLAAE 174 Query: 169 QANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A +S + + LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 175 PAPAPESGEAGETARAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGK 234 Query: 228 TATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 235 LQLHNRVELVRYAIERGL 252 >gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 13/134 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F L D L V + G +L P+ + A Sbjct: 93 IFPALRAGALSYVLKDVGPEELADTVRKAARGESVLHPR-------------VAARVVEE 139 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +L+ RE++ L I++G ++ EIA L IS TV ++++I+ K Sbjct: 140 LRGNRRDAPNPFTQLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVSNILGKLHMV 199 Query: 232 TRSGAIAYAVRNNI 245 R+ A +A + + Sbjct: 200 DRTQAAVFAWQQGL 213 >gi|262282221|ref|ZP_06059990.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262262675|gb|EEY81372.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 138 HIELHDDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 198 YAFQHHLV 205 >gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28] gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28] Length = 592 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 91/252 (36%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDIN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V +Q +D + P ++ + + + D + Q+ + +F T Sbjct: 407 --VVGLAEDGDQAID-LCGRLQPHVVLMDLDMQQMDGVEATKKIKQQWPHIRVLIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I Q + Sbjct: 464 DTKQALDSLRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKI----FEQFDEQN 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G + IA L +S TV NY +S K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 10/176 (5%) Query: 77 IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENI---TPPAGMDNRY 130 +V S P LV + + Y V++R + + Y Sbjct: 42 LVESLQPGVLVTDLMMGGMSGIEVTYQVVKRSPKTAVVILSMYGNEAYVHEALRAGARAY 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + R + L E + A + + + LT RE Sbjct: 102 VLKDSTSEELVRSVREAVQGHRYLSSP-LSEKAIEAYMEKSAEATS---LDPYETLTIRE 157 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L +++G T EIA L IS TV + A++MRK + ++ + YA++ I+ Sbjct: 158 REVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 75/218 (34%), Gaps = 12/218 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + +++ D AL + A + V + + + + P ++ + + Sbjct: 1 MIKIVLADDQALVRAGFRALLD---AQPGMTVVAEAADGAQAVRLAAEHEPDVVLMDIRM 57 Query: 93 SEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 D + P + F + + + A + + ++ Sbjct: 58 PGMDGLTATREMPPGPRIIILTTFELDEYVFEALRNGASGFLVKDTEPAELIQAVRVVAD 117 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208 ++ L+A Y + H +D LT RE E L+ + G T+DEIA Sbjct: 118 GDALLSPGVTRR--LIAEYASRAKPP---HPSQDLGMLTDREREVLSLVGTGMTNDEIAG 172 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S T +++ M K + R+ + A + +V Sbjct: 173 KLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGLV 210 >gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D L + ++ G+ + PK LL + Sbjct: 98 VFDAVKAGAMGYLLKDVPANELMATIRQVYSGVPSIQPKI---------ASKLLVEFGRK 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + ++ L+ RE+E L ++EG ++ +IA L ++ TV N++++I+ K T Sbjct: 149 ERSATPARPAQEETLSPREIEILKLLAEGASNRKIAEQLVLAEGTVKNHVSNILSKLHTG 208 Query: 232 TRSGAIAYAVRNNIV 246 R+ A A ++ Sbjct: 209 NRTQAAHLARERKLL 223 >gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 13/168 (7%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 P ++ + L + + E P + I+ G ++ Y +L Sbjct: 51 HQPDVVLMDLRLPGMSGFEAIAALTKEF--PSAQAI--AISTYEGEEDIYRAL------- 99 Query: 141 RIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 ++G PK L + + I +Y + + EL+ RE+E L I Sbjct: 100 QLGARTYLPKSVLEKELAEAIRAIHGGGSYVPPLVAARLAERTHHRELSEREIEVLQRIV 159 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G ++ EIA L I+ TV ++ +I+ K + R+ A A++ IV Sbjct: 160 KGLSNKEIAGHLFITEATVKLHVGNILTKLGVQDRTQASTVAIQRGIV 207 >gi|294630642|ref|ZP_06709202.1| two-component system response regulator [Streptomyces sp. e14] gi|292833975|gb|EFF92324.1| two-component system response regulator [Streptomyces sp. e14] Length = 223 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 3/143 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + + + ++ L Sbjct: 77 PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGDLLTAIRAVHSGDAVVAPSTTRR--L 134 Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L + + + K+ + LT RE E +T +++G ++ EIA L +S TV ++ Sbjct: 135 LDRFAPMLPTAGQGPQHKELQRLTEREREVMTLVAQGLSNGEIAARLVLSEATVKTHVGR 194 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R + A +V Sbjct: 195 ILTKLGLRDRVQVVVLAYETGLV 217 >gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 250 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 28/199 (14%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NIT 121 D ++ S++P + V + V+ P F + N++ Sbjct: 43 DVVIISNYPPEWVDIYRSNNYQHIDPVILTAINKISP-FSWDDDLVISSKLKFSRIFNLS 101 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-----ILRDRLWEIGLLAAYQA------ 170 + N Y + D L + + R I+++ ++ +L Sbjct: 102 KEYDIVNGYTFVLHDPGNNLATLSFMVEEHRSSELEEIIQNNRDKLQMLLISAHEKLTSL 161 Query: 171 NMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + S + H K E + RE E L W S GKT EIA+ILGI+ +TV +I ++++K Sbjct: 162 HREMSRNRHNSKPQEADIFSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKK 221 Query: 228 TATKTRSGAIAYAVRNNIV 246 AI V N++ Sbjct: 222 LGVLNAKHAIRLGVEMNLI 240 >gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 4/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + I + + ++ + + + L Sbjct: 80 PRVLVVTTFENDDYVYDALRAGASGFLLKRTPPDDIIAAIRTVAGSESLLFPEAIRGLAL 139 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A Q + ++LT RE E L +++G ++ EIA L + T+ ++A++ Sbjct: 140 AHAEQ----QPRQFTGLARYDLTEREQEVLRLMAKGLSNAEIATELVLGVQTIKTHVANL 195 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ A+ A + V Sbjct: 196 LGKLGARDRTQAVILAYESGFV 217 >gi|192289851|ref|YP_001990456.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283600|gb|ACE99980.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 308 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + +R+R + L G++ + L +G + +A + +F LT RE Sbjct: 198 PKVPMKSSRLRNDELRLQYMGKLGPNEFLLRLGRDTSAEAP------TQFSAEFGLTSRE 251 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 252 SEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 227 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 6/179 (3%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 ++ +V D +A + L + + F + + + Sbjct: 46 ERAADVVLMDIRMPGTDGLAATRLISADPALAQVRVVMLTTFEVDEYVVQSLRAGASGFL 105 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKDFELT 187 + + + + ++ GL+A + A D VH + LT Sbjct: 106 GKGSEPEELLNAIRVAAGGEALLSPAATK--GLIARFLAQGDADEDGRDRVHAERLAALT 163 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + +V Sbjct: 164 GREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMSKLGARDRAQLVFIAYESGLV 222 >gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] Length = 185 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 ++ ++ L + + + +L+ REVE L W+++GKT + I +LG++ TV Sbjct: 97 KMSKLVRLTHACLSEIITLSPPYNPLEKLSTREVEVLKWVADGKTGEVIGKVLGVTERTV 156 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +IM+K ++ A A I+ Sbjct: 157 THHTVNIMQKLNATNKTAAAVKAALLGII 185 >gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 K +LT RE + L ++ +G+++ EIA L +S TV +++ S+ K + R+ A Sbjct: 154 ERSKRQQLTERERDVLEYLIKGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDRTEAAI 213 Query: 239 YAVRNNIV 246 A+R+ IV Sbjct: 214 EAIRHGIV 221 >gi|313887441|ref|ZP_07821130.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica PR426713P-I] gi|312923083|gb|EFR33903.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica PR426713P-I] Length = 201 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 3/161 (1%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-ITPPAGMDNRYCSLTFDVARIRIGLM 145 V + L ++ + + P+ + N PAG + ++ ++ + Sbjct: 35 VDLLDLDALRQHITFISPDIIIADPLLTGVQYNPDLLPAGKEPILVAINHNLLPEDLYKG 94 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 F I L I L+ + +S + K L+ RE E +TW++ G T+ E Sbjct: 95 YSFVCLPTIEPQSL--IQLIQEAEQPDTESLESEEAKQTPLSQRECEVVTWVARGLTNKE 152 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA +L +S +TV + +I K + SG YA+ NN++ Sbjct: 153 IADVLHLSPHTVVTHRRNIAAKLDIHSPSGLTIYALMNNLI 193 >gi|182436043|ref|YP_001823762.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464559|dbj|BAG19079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 9/162 (5%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + R + +E ++ +L V+ L + D L V + G Sbjct: 68 EATRRITSAEGSAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVAAGD 127 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 LL P L+ + + ELT RE E LT I+ G ++ Sbjct: 128 ALLSPNITK---------RLIVEFSRTAGAPRPPLKARVGELTERETEVLTLIAGGLSNA 178 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI+ L ++ TV ++ I+ K + R+ A +A + +V Sbjct: 179 EISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLV 220 >gi|73539297|ref|YP_299664.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] gi|72122634|gb|AAZ64820.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] Length = 911 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKT 202 L+ P IL D E G + + + H + + + +E++ L ++ G++ Sbjct: 806 LLETGPAILPILPDANSEAGQSLGAAVSQLRGWQAHPVRRRAQFSAKEMQVLALLASGQS 865 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IA L +S NTV ++ I +K R+GA++ A++ ++ Sbjct: 866 NKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVSQAMQQGLL 909 >gi|253999547|ref|YP_003051610.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986226|gb|ACT51083.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 265 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L+ RE+E + W+ GKT+ EI +IL IS TV N++ I +K R+ A++ Sbjct: 203 QLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257 >gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074] gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074] gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074] Length = 228 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 2/142 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L F + + ++ G+ ++ ++ L Sbjct: 81 ARVLILTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVASGDALLAPGVTRR--L 138 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + + G+ ELT RE E L I++G ++ EIA L ++ +TV +++ I Sbjct: 139 ITEFSRLAERPQAPGPGQYGELTERETEVLVQIAQGLSNAEIADRLFVAESTVKTHVSRI 198 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + + R+ A +A +V Sbjct: 199 LVKLSLRDRTQAAVFAYEAGLV 220 >gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 230 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 10/180 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 V + P ++ + + D + + F + + Sbjct: 45 RQVEALQPDVVLMDVRMPGMDGIEATKQITDSGSDARVIILTTFDLDEYAFSGLQAGASA 104 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---EL 186 + + + + L+ G ++ R+ + L + + + +D EL Sbjct: 105 FLLKDVAPSELVHAVRLVA-SGDAVVAPRVTQRLLETYVRGGVVPGHSPTSHRDPLLDEL 163 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E LT I+EG ++ EIA +S TV ++ I+ K + R + YA +V Sbjct: 164 TPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYAYETGLV 223 >gi|293603128|ref|ZP_06685562.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter piechaudii ATCC 43553] gi|292818522|gb|EFF77569.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter piechaudii ATCC 43553] Length = 120 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ R+ CL W + GKTS E + ILG+S +TVN ++ + K + R A+ A+R + Sbjct: 55 LSDRQAACLYWSAAGKTSWETSRILGVSESTVNFHLRNACAKLGVRGRRAAVVSALRLGL 114 Query: 246 V 246 + Sbjct: 115 L 115 >gi|291300052|ref|YP_003511330.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569272|gb|ADD42237.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 5/209 (2%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + + + + + VG + L+ +L ++ D +V D + + + + Sbjct: 14 VRAGFAALLNAQSDIDVVGEAANGLLALELSRQHHPD-VVLMDVRMPEMDGLEATRRLLG 72 Query: 99 YNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157 N + RP L F + + + + ++ ++ Sbjct: 73 GNETEYRPKVLMLTTFDIDDYIYEALRIGASGFLLKDSPPDDLTAAVRVIAAGEALLAPS 132 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L+A + A LT RE E LT I+ G ++ EIA L ++ TV Sbjct: 133 VTRR--LIAEF-ARTRPKATATSATLASLTDRETEILTLIARGLSNREIAGRLVVAEQTV 189 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ I K + R+ A+ A +V Sbjct: 190 KTHVGRIFAKLGLRDRAQAVVCAYETGLV 218 >gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29] gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29] Length = 592 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 91/252 (36%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDIN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V +Q +D + P ++ + + + D + Q+ + +F T Sbjct: 407 --VVGLAEDGDQAID-LCGRLQPHVVLMDLDMQQMDGVEATKKIKQQWPHIRVLIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I Q + Sbjct: 464 DTKQALDSLRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKI----FEQFDEQN 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G + IA L +S TV NY +S K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] Length = 220 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 12/178 (6%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---D 127 E+ IV D VR +S D +L+R E + + + Sbjct: 50 EELDPDIVLCD-----VRMQGVSGLDLCQTLLERNPERKVVMLSVYDDEQYLFQALRVGA 104 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 Y + + L I + AA A + + G LT Sbjct: 105 AGYLLKSISSDDLVHQLEFAHSGETAIDP----VMAARAAGTAARLQRDEFWPGARQGLT 160 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE E L+++ G ++ IA L I TV ++ SI RK R+GA+A A+R I Sbjct: 161 QRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSDRAGAVATALREGI 218 >gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 309 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 +L L + + +F LT RE E L W+S+GKT+ +IA ILG+S TV Sbjct: 219 KLGANEFLLRLARDTSTDSPREFATEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTV 278 Query: 218 NNYIASIMRKTATKTR 233 + ++ I K + R Sbjct: 279 DKHLEQIYAKLGVENR 294 >gi|326776667|ref|ZP_08235932.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657000|gb|EGE41846.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 9/162 (5%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + R + +E ++ +L V+ L + D L V + G Sbjct: 68 EATRRITSAEGSAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVAAGD 127 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 LL P L+ + + ELT RE E LT I+ G ++ Sbjct: 128 ALLSPNITK---------RLIVEFSRTAGAPRPPLKARVKELTERETEVLTLIAGGLSNA 178 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI+ L ++ TV ++ I+ K + R+ A +A + +V Sbjct: 179 EISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLV 220 >gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 13/154 (8%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-----KGRII 154 N L+R E F +F + G+ +R ++ +G + + + +++ Sbjct: 74 NRLERGAE-FQTIFQAARD-----FGISDRGLTIPIHGPYGDVGGLSINRDCSEREWQLL 127 Query: 155 LRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + + + A + +M D L+ RE+E L W + GK+ +I IL I Sbjct: 128 ISGIIGNLQAAAVHMHDMVIQSDPLTRMLNTPSLSTREIEILQWTAAGKSQQDIGDILSI 187 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ S +K T AI A+ ++ Sbjct: 188 SHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221 >gi|312137639|ref|YP_004004975.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311886978|emb|CBH46287.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 206 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 10/160 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + + E VF T + +D + Sbjct: 53 MDLALGTGIDGVEAIRRIRAARPEQPVLVFTTYDTDADVVRALDAGAI--------GYLL 104 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 P +RD + +L+ A+ D D LT RE E L+ ++EG T+ Sbjct: 105 KDSAPPDIFGAIRDAVAGRSVLSPPVASRV--LDRMRRPDQALTAREAELLSLLAEGLTN 162 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 E+ L IS TV ++A I K +R+ A++ A+R Sbjct: 163 KELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202 >gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 219 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 7/163 (4%) Query: 87 VRCMALSEKDKYYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 V+ + + ++ P + F+ + Y T ++ Sbjct: 58 VQMPDMDGLEATRRIVADPGLHAAVVVLTTFNREDYLVEALHAGAVGYLLKTSRPEQLTE 117 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 ++ ++ + ++A A + LT RE + L ++ G Sbjct: 118 AVLSAAAGEGLLSPEVTR--AVIARAVAERRPARPA-PQPVVPLTEREQDVLALVARGLN 174 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +DEIA L +SR TV ++++++ K + R A+ YA + + Sbjct: 175 NDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVYAHEHGL 217 >gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P L ++ G A Sbjct: 90 VYDALHAGASGFLLKDVRRDDLVHAVRVVAQGDSLLAPSVARRLVEQYTRPG------AA 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D LTGRE E L ++ G ++ EIA L +S +TV ++ +++ K + Sbjct: 144 RPRRPDPRLDV---LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 201 DRIQAVICAYETGLV 215 >gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|182435647|ref|YP_001823366.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464163|dbj|BAG18683.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 222 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D + L V + G LL P+ + RL I + + Sbjct: 92 VYDALTAGASGFLLKDATFPELLHAVRVVAGGHALLAPE----ITGRL--IAEFTRQRVS 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V LT REVE L I+ G ++ +IA L I+ +TV +I + K + Sbjct: 146 APPPRSVD-----GLTAREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 201 DRAQAVILAYERGLV 215 >gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 243 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +E ++ + + + T L P L + G ++ +G+ Sbjct: 85 ATEPFRWSD-IAKLTPLTAPETDFLKRLLQQGLGDGLALQVFGPNMRNGYVGVGFASSDP 143 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + + E+ AA A++ V LT RE E L WI+ GK++ IA ILG Sbjct: 144 D-LSGGDIRELQA-AAQAAHLRYCTLVPVATPEALTPREREVLGWIARGKSNSVIAEILG 201 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S +TV+ + I K R+ A + ++ Sbjct: 202 VSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGLI 236 >gi|269128686|ref|YP_003302056.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313644|gb|ACZ00019.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 225 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 3/172 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + +RP + F + + Sbjct: 49 DVVLMDVRMPRVDGIEATRRIGALPAERRPRVIILTTFDLDEYAFAAIKAGASGFLLKDA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECL 194 A++ + + ++ LL + ++ G LT RE E L Sbjct: 109 GPAQLIEAIRAVHSGDAVVAPSTTRR--LLDRFAVHLPDAEQQSAAGALAALTAREREVL 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L +S TV ++ I+ K + R A+ +A +V Sbjct: 167 HLVARGLSNAEIAGRLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGLV 218 >gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917] gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917] Length = 92 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 40/66 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT K R + +A Sbjct: 9 SPSIDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALLNWA 68 Query: 241 VRNNIV 246 + + + Sbjct: 69 MDHGKI 74 >gi|299533898|ref|ZP_07047264.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298718125|gb|EFI59116.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 223 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 LL+ +L + LD + V+ + +S ++ VF + Sbjct: 58 LLIDLNLGDGEGLDLLELVQGTHPHVQSIIVSVTERDEK-----------VFQAFEKGAV 106 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 ++ + V ++ G + P + + L + Y Sbjct: 107 GYLLKNSWFGDYAQAVLQVANGGASITPS---LAKKILSLVSRSQTYVVPA-----SSLT 158 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ +L+ RE+E L I+ G +S EI+ L IS TV+ ++ ++ RK KTR+ A+ A Sbjct: 159 KEEKLSEREIEILKLIACGYSSPEISTQLKISTLTVSTHVKNMYRKLQAKTRAHAVKAAS 218 Query: 242 RNNIV 246 ++ Sbjct: 219 LRGLI 223 >gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] Length = 252 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 6/159 (3%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + + +E + ++ R L + E + G++ + V ++ Sbjct: 85 VREMLRSTEPLFWSDLPARRGALKPDEARVMEEARS--FGLNEGLMTPLHHVDGSVSAVL 142 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDFELTGREVECLTWISEGK 201 ++ + D + LL+ Y ++ + D + +L+ R++ECL W EGK Sbjct: 143 MMGERLASDAPDTRAALHLLSIYYGSLARKLRQRNDGGEPQKAKLSARQIECLRWAREGK 202 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +S I IL +S TV+ ++AS RK TR A+A A Sbjct: 203 SSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241 >gi|19554120|ref|NP_602122.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391773|ref|YP_227175.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21325708|dbj|BAC00329.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41327115|emb|CAF20959.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 212 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ +I IL +S TV +++ I K ++R+ A+A A + Sbjct: 152 LTPRELEVLKLVAGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGL 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 249 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 17/182 (9%) Query: 81 DWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCS 132 + P ++ + + + D Y + P PV + I + Y Sbjct: 66 NTPELVISDIMMPKVDGYQFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLP 125 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWGK-------D 183 FD + + L + D + L +A A + D G Sbjct: 126 KPFDPDELVAIVQNLLERRAASSEDSVGSTELEKIAKQVAEIRAMLDQKNGIVQTPPPLR 185 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + T RE L +++G + EIA L S V Y++ + KT T +R+ + YA+ + Sbjct: 186 IDFTAREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEH 245 Query: 244 NI 245 + Sbjct: 246 GL 247 >gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 8/148 (5%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML--------LFPKGRIILRD 157 E + PE + LT + G +L + + D Sbjct: 66 RETLAQIMSVHPEQTVLMLTISEDGDDLTECMRLGARGYLLKNIHADFLIEAVKKAYHGD 125 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 ++ + A ++ + + ELT RE+E L +S G ++ IA L ++ +TV Sbjct: 126 NIFSPEMTARLVQSLIRPHQPESTPLDELTARELEILGHLSAGHSNKIIARHLDLAESTV 185 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ +I+RK +R A YAV++NI Sbjct: 186 KVHVQNILRKLELDSRVQAAVYAVQHNI 213 >gi|318058792|ref|ZP_07977515.1| two-component system DNA-binding response regulator [Streptomyces sp. SA3_actG] gi|318075476|ref|ZP_07982808.1| two-component system DNA-binding response regulator [Streptomyces sp. SA3_actF] gi|333026609|ref|ZP_08454673.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746461|gb|EGJ76902.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 6/146 (4%) Query: 102 LQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 +RP L V + I Y + + + + + +G + RL Sbjct: 78 TERPVRFLALSVSDAAEDVIGVIRAGSRGYVTKAINGTELVAAIHRVN-EGDAVFSPRLA 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +L A+ N D K LT RE + L I+ G + EIA L IS TV ++ Sbjct: 137 GF-VLDAFSNNTVPPVDEELDK---LTQRERDVLRLIARGHSYKEIAKELFISVKTVESH 192 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +++++RK R +A +V Sbjct: 193 VSAVLRKLQLSNRHELTRWAAARRLV 218 >gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 92 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 41/64 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 EISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70 Query: 243 NNIV 246 N + Sbjct: 71 NGKI 74 >gi|39934323|ref|NP_946599.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39648171|emb|CAE26691.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 308 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 +L L + + +F LT RE E L W+S+GKT+ +IA ILG+S TV Sbjct: 219 KLGPNEFLLRLGRDTSAEAPTQFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTV 278 Query: 218 NNYIASIMRKTATKTR 233 + ++ I K + R Sbjct: 279 DKHLEQIYAKLGVENR 294 >gi|291438083|ref|ZP_06577473.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340978|gb|EFE67934.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 235 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + + D + + P F + + + + Sbjct: 66 DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 125 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + + ++ LL + + + K+ E LT RE E + +++G Sbjct: 126 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPGTGKQPAHKELERLTEREREVMVLVAQGL 183 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 184 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 228 >gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 223 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I G ++ EIA L I+ TV +++SI+ K R+ A A++ N+ Sbjct: 159 LTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHVSSILMKLNVNDRTQAAVLAIQENL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 225 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 9/163 (5%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 F++ R +A + + + + F P + + S R+ Sbjct: 64 FEVARALARA-PETRSTGVVFLAQSFDPAL-----AVQGLMAGGRAFVSTGDPPRRLVTA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ L + L LTGRE+E L ++ G ++ Sbjct: 118 ARAVAAGYAVLPPAVLADGPWLTGSGGAARPGAAPGVP---GLTGRELEVLRLMAAGMSN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L + TV ++++ ++ K + RS AIA A R +V Sbjct: 175 AEIAGHLSLGEATVKSHVSRLLGKLGLRNRSQAIACAYRTGLV 217 >gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 250 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 4/222 (1%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 + D L + ++ + V + VR + + V+S Sbjct: 25 ILEGEDDLRIVGEASDGAEAIRQVREVDPDV---VLMDVRMPVLDGIEATRAVTSSGSHA 81 Query: 86 LVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 V + + D+Y LQ F E ++ + + + V R + Sbjct: 82 KVIILTTFDLDEYAFAGLQAGASAFLLKDVAPSELVSAVRVVASGDAVVAPRVTRRLLEA 141 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + R A + LT RE+E L ++EG ++ Sbjct: 142 YVREGNPPAVNGQRAGTSAPAAGRGRHSLGEEQQRDPLLEALTPREMEMLEAMAEGLSNA 201 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA +S TV ++ I+ K + R A+ YA +V Sbjct: 202 EIAHRFFLSEATVKTHVRRILAKLHLRDRVQAVVYAYETGLV 243 >gi|302538376|ref|ZP_07290718.1| predicted protein [Streptomyces sp. C] gi|302447271|gb|EFL19087.1| predicted protein [Streptomyces sp. C] Length = 516 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 3/157 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + V L F + + + + + Sbjct: 355 GVAATARLAEVRPGARVLALSTFDMDEYVVAALRAGACGFLPKDVSPEELIAAVRTVHTG 414 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVI 209 + L LL+ Y + LT RE+E ++ G + IA Sbjct: 415 EAAVAPRLLTR--LLSTYVRTAPREPRPAPATTPDGLTPRELEIWRLLARGLDNAAIAAE 472 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS +TV N+I ++ K + R+ A+ A +V Sbjct: 473 LDISVSTVKNHITAVFGKLGVRDRAQAVIAAYETGLV 509 >gi|282860900|ref|ZP_06269966.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564636|gb|EFB70172.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + + L Sbjct: 96 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGSDLVDSVFRVQEGDAVFSP-------RL 148 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231 >gi|302553638|ref|ZP_07305980.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471256|gb|EFL34349.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 247 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 112 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP-------RL 164 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 165 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 224 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 225 VLRKLQLSNRHELTRWATARRLV 247 >gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083] gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P I R + E L Sbjct: 97 VYEALRAGASGFLLKDASAEQLAEAVRVVAAGDALLAPG---ITRRLIAEFSRLDH---- 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + ELT RE E L I++G ++ EIA L ++ TV ++ I+ K + Sbjct: 150 --RPRAPLKTRVGELTERETEVLALIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLR 207 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A + +V Sbjct: 208 DRTQAAVFAYESGLV 222 >gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 245 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQA 170 F L + D R L + + G ++ P+ + R+ E+ L + A Sbjct: 116 FAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPR----ITQRMLEMFAASLPSSDA 171 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 S D LT RE E L +S+G ++ EIA L +S TV ++ +++ K Sbjct: 172 PAQPSSDPRID---SLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDV 228 Query: 231 KTRSGAIAYAVRNNI 245 + R A+ A + Sbjct: 229 RDRVQAVVVAYETGL 243 >gi|297161250|gb|ADI10962.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 238 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA Sbjct: 105 HADVLEAVKSGATGYLLKSASTEDLLDAVRRTAAGEPVFTPGLAGLV---LGEYRRLATD 161 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A V LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 162 PAPAAPDRPVAP----RLTEREKEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 217 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 218 QLHNRVELVRYAIERGL 234 >gi|290958054|ref|YP_003489236.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647580|emb|CBG70685.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 297 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 162 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP-------RL 214 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 215 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSA 274 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 275 VLRKLQLSNRHELTRWATARRLV 297 >gi|329296611|ref|ZP_08253947.1| LuxR family transcriptional regulator [Plautia stali symbiont] Length = 89 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + + RE+E L W +EGKTS EI +IL IS +TVN + ++ ++ ++ YA Sbjct: 28 DFSQRELEILKWTAEGKTSAEICLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIG 87 Query: 245 IV 246 ++ Sbjct: 88 LI 89 >gi|21231619|ref|NP_637536.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768259|ref|YP_243021.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991396|ref|YP_001903406.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21113311|gb|AAM41460.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573591|gb|AAY49001.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733156|emb|CAP51354.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris] Length = 213 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L ++ G ++ +I LGIS TV ++ +I+ K + R+ A+ A+R Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGNALGISEETVKAHMKNILCKLGVRDRTHAVTVALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|260061809|ref|YP_003194889.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea biformata HTCC2501] gi|88785942|gb|EAR17111.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea biformata HTCC2501] Length = 536 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I+ G T+ A L IS TV+ ++++I K +R A A+++ + Sbjct: 472 LTLRELQVLRLIASGMTNKSAARELFISERTVDRHVSNIFDKLGVSSRVAATVVAIKHKL 531 Query: 246 V 246 + Sbjct: 532 I 532 >gi|294630991|ref|ZP_06709551.1| two-component system response regulator [Streptomyces sp. e14] gi|292834324|gb|EFF92673.1| two-component system response regulator [Streptomyces sp. e14] Length = 244 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%) Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 +RP L V + I G Y + T A + + + + Sbjct: 105 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGADLVDSIFRVQEGDAVFSP----- 159 Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D + LT RE E L I+ G EIA L IS TV + Sbjct: 160 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 217 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 218 HVSAVLRKLQLSNRHELTRWATARRLV 244 >gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D L+R EL P F + + Y Sbjct: 52 PDVVLMDIKMPGTDG-IEALRRLRELDNPAKVLIVTSFTEQRTVVPALRAGASGYVYKDV 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ + G L A + + + RE E L Sbjct: 111 DPDALAGAIRSVHAGHVLLQPEV---AGALLAQEDTGTGTGRGSTLTE-----REREVLG 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 I++G+++ EIA L +S TV ++++I+ K R+ A +AVR+ Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211 >gi|239929757|ref|ZP_04686710.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + + D + + P F + + + + Sbjct: 55 DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + + ++ LL + + + K+ E LT RE E + +++G Sbjct: 115 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPGTGKQPAHKELERLTEREREVMVLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 92 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 43/72 (59%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D + L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R Sbjct: 3 SLDGADPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62 Query: 235 GAIAYAVRNNIV 246 + +A+ N + Sbjct: 63 ALLNWAMDNGKI 74 >gi|145296944|ref|YP_001139765.1| hypothetical protein cgR_2844 [Corynebacterium glutamicum R] gi|140846864|dbj|BAF55863.1| hypothetical protein [Corynebacterium glutamicum R] Length = 212 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ +I IL +S TV +++ I K ++R+ A+A A + Sbjct: 152 LTPRELEVLKLVAGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGL 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T A + G+ + + RL + Sbjct: 85 PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 142 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + LT RE+E L ++ G T EIA L IS TV + +++ Sbjct: 143 LDSFTGRSNAPEPPLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 202 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RKT R+ +A R I Sbjct: 203 LRKTQQSNRNALTRWAHRRRI 223 >gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae] Length = 210 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|330828126|ref|YP_004391078.1| putative csgAB operon transcriptional regulatory protein [Aeromonas veronii B565] gi|328803262|gb|AEB48461.1| Probable csgAB operon transcriptional regulatory protein [Aeromonas veronii B565] Length = 215 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L+ +I+L + LL + D LT RE E + ++ G ++ E Sbjct: 111 LVAGLQKILLGEYWMPRHLLCELVEYYRQGNSYLQRNDTLLTAREQEIIRYLMTGASNVE 170 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 IA L +S +TV +++ ++ +K K R A+++A Sbjct: 171 IADSLFVSEHTVKSHLYNVFKKLNVKNRIQAVSWA 205 >gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 41/255 (16%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL------------ 74 P R R + +T + +R L +Q+L Sbjct: 29 PPRWQARRRTADGRFRWPTGRVVRRVTTLWHMTT--PIRVVLADDQRLVRAGFRSILDDE 86 Query: 75 DSIVSSDWPFDLVRCMALSE--------------------KDKYYNVLQRPTELFCPVFH 114 D I D V + L+ + +R +E+ + Sbjct: 87 DDIEVVGEAADGVEAVRLAGELLPDIVLMDIRMPEEDGLAATRRITGDERLSEVKVLILT 146 Query: 115 TLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 T + + + + + + G+ + +I L+A + Sbjct: 147 TFDMDDYVFNALYAGASGFLVKDTEPMELLHGIRVCSRGDALIAPKVTRR--LIAEFTNR 204 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE E L + G T+DEIA L +S T +++ IM K + Sbjct: 205 IRHPDPSP--RLNALTAREHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGAR 262 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + ++ Sbjct: 263 DRTQLVITAYESGMI 277 >gi|289641792|ref|ZP_06473950.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508436|gb|EFD29377.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 402 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 3/142 (2%) Query: 97 KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 + + ++ L + +D +R L I Sbjct: 254 HRGELAEFDRDILAVFAEGLGYALERAVLLDR---LAQMRTEMLRYTAGLAATMNDIEEP 310 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R G+ + + +D W D LT RE++ L ++ G T+ IA L IS T Sbjct: 311 IRFGAYGMNHGFAQPVRPFHDTPWPADSRLTRREIDVLRLMAAGNTNARIADRLIISEGT 370 Query: 217 VNNYIASIMRKTATKTRSGAIA 238 V +++ I+RK +R+ A++ Sbjct: 371 VKSHVKHILRKLNAASRTEAVS 392 >gi|297191334|ref|ZP_06908732.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720655|gb|EDY64563.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 220 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 44/80 (55%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I R Sbjct: 140 NRMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIAR 199 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K T R+G +A A+R I+ Sbjct: 200 KLGTGDRAGMVAVALRTGII 219 >gi|296130230|ref|YP_003637480.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022045|gb|ADG75281.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 239 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 87 VRCMALSEKDKYYNVLQR-------PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139 VR + + ++ R P + F + + + Sbjct: 66 VRMPTMDGLEATERIVARGTDDAPAPRVIVLTTFDLDEYVLAAIRAGASGFLLKDAPPEE 125 Query: 140 IRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + +I RL E + A + D +LT RE E L Sbjct: 126 MLAAIRTVHRGDAVIAPSSTRRLLEHLVTALPGDAPAATADPAHQAVAQLTEREREVLVL 185 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G+++ EI L ++ TV ++ I+ K + R A+ A +V Sbjct: 186 MARGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVVAYEAGLV 235 >gi|88854587|ref|ZP_01129254.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88816395|gb|EAR26250.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 538 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 D + LT A + + + L E+ + + +L Sbjct: 419 DEAHTRLTLAEALLATTDESAAQHHLALATEVLTELSADDDLALARRLATAAGAPPEGQL 478 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E L +S+G ++ EIA L +S +TV+ ++A+I+ K +R+GA +YA++ ++ Sbjct: 479 SARELEVLRLVSQGLSNPEIAASLVLSEHTVHRHVANILTKLDQTSRTGAASYAIQAGLL 538 >gi|291451125|ref|ZP_06590515.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354074|gb|EFE80976.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 223 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 12/175 (6%) Query: 82 WPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYC 131 P ++ + + E D + RP + F + + Sbjct: 44 HPDIVLMDVRMPEMDGLTATRELLSPEPGTAHRPKVIMLTTFDVDDYVYEALHAGASGFL 103 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A + + ++ ++ + + + LT RE Sbjct: 104 LKDSPPASLVSAVRVIHGGNALLDPAVTRRF--IEDIVRRRPRPRRDPRLQLNGLTPRET 161 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++ EIA L ++ TV +I+ I+ K + R+ A+ A + +V Sbjct: 162 EVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESGLV 216 >gi|239931777|ref|ZP_04688730.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 182 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 5/137 (3%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA+ Sbjct: 48 HADVLEAVKSGATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 104 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D K LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 105 PAGPAQGDD--GSKAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 162 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 163 QLHNRVELVRYAIERGL 179 >gi|297191947|ref|ZP_06909345.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723328|gb|EDY67236.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R + R +A+ + ++ + L+ RE E L +++G ++ I Sbjct: 120 LFTAVRAAAQGRTVLSPAVASRLVSHVRAPAAPGSE--GLSAREREVLELVAKGTSNRAI 177 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ + K K R+ A+A A I+ Sbjct: 178 ARELFISEATVKTHLTHVFGKLGAKDRAAAVALAYERGIL 217 >gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 199 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D + LT E+ L ISE KT+ EI+ +L ISR TV ++++SI+RK +R Sbjct: 127 PIDRLSNYNSPLTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRV 186 Query: 235 GAIAYAVRNNIV 246 GA+ A++ I+ Sbjct: 187 GAVVKAMKLGIL 198 >gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDF 184 + Y + L P+ ++E L + A + K +D Sbjct: 86 TDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEGGAALQSGIAARVLKRLATEPAED- 144 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE++ L + G+++ IA+ L IS NT+ ++++ I K ++R+ A+A A++ Sbjct: 145 ELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVALQRG 204 Query: 245 IV 246 +V Sbjct: 205 LV 206 >gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 221 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 12/146 (8%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T D + + + + Sbjct: 82 PVFLALSVSDAATDVIATIRAGARGYVTKTIDGGELADAVRRVAEGDAVFSP-------R 134 Query: 165 LAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F + LT RE+E L ++ G T EIA L IS TV Sbjct: 135 LAGFVLDSFTGRSPVPEPQLDPELDSLTRREMEVLRLLARGYTYREIAEELFISVKTVET 194 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245 + ++++RKT R+ +AV I Sbjct: 195 HASNVLRKTQQSNRNALTRWAVNRQI 220 >gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 21/170 (12%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVF---HTLPENITPPAGMDNRYCSLTFD 136 P +V + L + + + P V H + Y + Sbjct: 50 PDVVVLDLRLPRISGFDVITTLRKAPRPARIVVLSNYHGSEDIYRAVRSGAMGYLTKDAS 109 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + R + R L + ELT RE E L Sbjct: 110 GEELINAIQTVDRDLRYLPRLALDRLA---------------ERTPAVELTPREREVLIC 154 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G+++ EIA L I+ TV +++S++ K + R+ A YA++ +V Sbjct: 155 ITQGRSNREIAEQLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204 >gi|288553881|ref|YP_003425816.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545041|gb|ADC48924.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 211 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 42/89 (47%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + ++ + D K LT RE E L +++G+++ E+A +L I T Sbjct: 122 ESKVHSKVMKYVLTRISHKEDEEEAKVKRLTKREKEVLIELAKGRSNKELADVLHIKEKT 181 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V +I++I+ K R+ A +A+R I Sbjct: 182 VKTHISNILSKLELSDRTQAALFAMRMGI 210 >gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 209 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 9/151 (5%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + + + V + ++ ++ S +R Sbjct: 59 GIGGVEATRRIRESCPSSKVIVLTSFIDDEKVYPVIEAGAFSYLLKTSRAA-------EI 111 Query: 151 GRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + I E L + + + +LT RE+E L I +GK++ EIA Sbjct: 112 AKAIRSAAAGEPVLESRVAGKIMARFRHGQESHPHEQLTPRELEVLKLIGQGKSNQEIAD 171 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L I TV ++++I+ K + R+ A Y Sbjct: 172 ELIIGIKTVKTHVSNILAKLNVEDRTQAAIY 202 >gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T A + G+ + + RL + Sbjct: 85 PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 142 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + LT RE+E L ++ G T EIA L IS TV + +++ Sbjct: 143 LDSFTGRSNAPEPPLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 202 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RKT R+ +A R I Sbjct: 203 LRKTQQSNRNALTRWAHRRRI 223 >gi|300866500|ref|ZP_07111190.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300335457|emb|CBN56350.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 241 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + + LT RE+E L I +G ++ IA L I+ TV ++ +I+ K R+ A Sbjct: 172 SHIIETYPLTERELEVLELIVQGYSNAAIAEKLYITVGTVKTHVRNILNKLCADDRTQAA 231 Query: 238 AYAVRNNIV 246 A+R+ +V Sbjct: 232 VLALRSGLV 240 >gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 8/184 (4%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 L +E++ D +V D +A + L R + F + Sbjct: 43 LAKEERAD-VVLMDIRMPGTDGLAATRLISADPTLTRVRVVILTTFEVDDYVVQSLRAGA 101 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----K 182 + + + + + + ++ GL+A + A S D G + Sbjct: 102 SGFLGKGAEPEELLNAIRVAAGGDALLSPTATK--GLIARFLAQPDDSADGDRGAARSER 159 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + +A Sbjct: 160 LATLTGREREVLVQVAGGLSNDEIAERLEVSPLTVKTHVNRGMAKLGARDRAQLVVFAYE 219 Query: 243 NNIV 246 + +V Sbjct: 220 SGLV 223 >gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 13/135 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L ++ + L + + G ++L P+ + R + E G A +A+ Sbjct: 93 VRRLLKAGVSGYVLKKSAGAELANAIRAVHRGGLVLDPE---VARTAMEEAGPAAPGEAD 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++S LT RE + L ++EG+++ E+A +LGIS T ++ +M K Sbjct: 150 PYES----------LTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVH 199 Query: 232 TRSGAIAYAVRNNIV 246 R+ + +A+R ++ Sbjct: 200 NRTELVRFAIRKGVI 214 >gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] Length = 227 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 6/191 (3%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHT 115 + VRW Q+ + S ++ + + D + + F Sbjct: 27 ITVRWQAADGQEACELAESQPVDIILMDVQMPRMDGIEATRQVVSGDSGARVIVLTTFDN 86 Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + + + D + + + +I + + + Sbjct: 87 DNYVLGAVEAGASGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRR 146 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V LT RE+E L I+ G ++ EIA L IS TV ++ ++ KT ++ R Sbjct: 147 EPVELDLPDPLTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVH 206 Query: 236 AIAYAVRNNIV 246 + +A ++++V Sbjct: 207 VVLFAFKHHLV 217 >gi|84494899|ref|ZP_00994018.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649] gi|84384392|gb|EAQ00272.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649] Length = 937 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 R+ + L + D LT RE+E L ++EG ++ +++ L I+ N Sbjct: 843 REAVATASQLRTPRLRGRVGLDGPHSGPEGLTFRELEVLRLVAEGLSNRQLSERLFITEN 902 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV N++ SI++KT R+ A YA + ++ Sbjct: 903 TVTNHVRSILQKTGVANRTMAARYAAEHGLL 933 >gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 14/193 (7%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITP 122 D + ++V P +V + + D L+R + + T E+ Sbjct: 37 DAADGAAVIAVVERVQPDVVVMDIRMPGMDG-LAALERIRTMWPHITVLLLTTYDEDELL 95 Query: 123 PAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------ 173 G+ + Y V + + +I + + + A + Sbjct: 96 IRGLQAGASGYFLKETPVETLLDAIRSAARGEMLIQPETMARLLSHATSVSPALSVSRSQ 155 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT RE + L +++G+ S EIAV LGI+ TV Y+ SI K +R Sbjct: 156 HPQGAGISGSIALTKRERQVLAGVAQGERSKEIAVRLGITERTVRAYLTSIYTKLNVDSR 215 Query: 234 SGAIAYAVRNNIV 246 + A+A A+ ++ Sbjct: 216 ASAVAVALAYGLL 228 >gi|297562938|ref|YP_003681912.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847386|gb|ADH69406.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 5/161 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 LS + + F T + + + + + Sbjct: 62 GLSATRSLVSSGADCRVVILTTFDTDEYVVEGVEAGAAGFLLKNTPPEELLEAVRTVHRG 121 Query: 151 GRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +I + LL + LT RE E L ++ G T+ E Sbjct: 122 DSVISASSTRRLLGHVRPLLGGPSSRPVPIDGDTRRAVASLTPREQEVLVAVALGYTNTE 181 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L +S TV ++ ++ KT ++ R A+ +A R +V Sbjct: 182 ICERLVLSMPTVKTHVGHVLAKTGSRDRVQAVLFAFRAGLV 222 >gi|291456580|ref|ZP_06595970.1| putative two-component regulator [Bifidobacterium breve DSM 20213] gi|291381857|gb|EFE89375.1| putative two-component regulator [Bifidobacterium breve DSM 20213] Length = 268 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N + Sbjct: 208 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 267 Query: 246 V 246 V Sbjct: 268 V 268 >gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 236 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 42/109 (38%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 AR + + + I L+ H L+ REVE LTW Sbjct: 126 ARDAYASFDFLKHVDDVAPESIGMIRSLSQVAHQRVVILVEHKLDAPALSEREVEVLTWA 185 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GK+ IA IL IS +T Y I K R GA+ A+R +V Sbjct: 186 ARGKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGLV 234 >gi|332671033|ref|YP_004454041.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340071|gb|AEE46654.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 237 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 3/145 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWE 161 P + F + + + + + + +I RL E Sbjct: 89 PRIIVLTTFDLDEYVLAAIRAGASGFLLKDAPPEEMLAAIRTVHHGDAVIAPSSTRRLLE 148 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + A + D +LT RE E L +++G+++ EI L ++ TV ++ Sbjct: 149 HLITALPPDAPGAAADPARRAVADLTEREREVLVLMAKGRSNTEIGQDLFVAEATVKTHV 208 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ A +V Sbjct: 209 GRILAKLGARDRVQAVVTAYETGLV 233 >gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp. avium ATCC 25291] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 11/211 (5%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + F++V ++ + + V++ P +V + + D Sbjct: 13 VDDQDLVRSGLRRILRR--KDGFVIVAECADGDE-VPAAVAAHRPDVVVMDLRMRRVDGI 69 Query: 98 --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + P L F+ + + + + + Sbjct: 70 EATRRLGGTPPVLALTTFNEDELLSAALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLD 129 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L Y + ELT RE++ LT I +G ++ EIA L IS Sbjct: 130 PAVTSRV--LTTY---RKAAPGPRGAAIAELTTRELDVLTLIGKGLSNSEIADELCISGV 184 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++I I K + R+ AI YA N IV Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215 >gi|297201836|ref|ZP_06919233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717312|gb|EDY61346.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 241 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 106 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP-------RL 158 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 159 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 218 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 219 VLRKLQLSNRHELTRWATARRLV 241 >gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 217 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D ++ +GL + + RD L + L+ + ++ + ELT RE++ L+ Sbjct: 110 DFDKVMMGLKGILNGENWLSRDILNQ--LIGHLLSLNNTVGELETKLEMELTRREMQVLS 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + +G ++ +IA L +S +TV +++ SI RK K R AI +A RN Sbjct: 168 ALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215 >gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 217 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 70/215 (32%), Gaps = 10/215 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV--RCM 90 R++ +D + A+ G L + S+V D+ + Sbjct: 3 APRILIVDDHQLAREGLRAVLAGDGMEVVGLASTGEEAVELAGSLVPDVILMDVRLGDGI 62 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLLFP 149 E + L P ++ H +P + Y ++ +R + + Sbjct: 63 DGLEATRQVVALGLPIKVVMLTLHEMPGYVREALAAGAAGYVLKDTEIGDLRAAINQVMA 122 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + D L + + LT RE E + ++EG T+ EIA Sbjct: 123 GQSALPLD-------LVSAAMRAENRPEPKGDLSQILTSREQEVVELVAEGLTNKEIARK 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L IS TV ++ ++ K R+ A AV+ Sbjct: 176 LDISPATVKVHVERLIGKLGVADRTQAAVMAVKLK 210 >gi|329948078|ref|ZP_08294979.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523217|gb|EGF50318.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 244 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D R L + + G ++ P+ + R+ E + A N Sbjct: 116 FAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPR----VTQRMLE--MFAPSLPNS 169 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT RE E L +S+G ++ EIA L +S TV ++ +++ K + Sbjct: 170 GAPTQASDPRIDSLTPREKEILVLMSQGLSNAEIADHLVVSATTVKTHVGNVLAKLDVRD 229 Query: 233 RSGAIAYAVRNNI 245 R A+ A + Sbjct: 230 RVQAVVVAYETGL 242 >gi|307332414|ref|ZP_07611482.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881948|gb|EFN13066.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 240 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%) Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 +RP L V + I G Y + T + + + + Sbjct: 101 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSP----- 155 Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D + LT RE E L I+ G EIA L IS TV + Sbjct: 156 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 213 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 214 HVSAVLRKLQLSNRHELTRWATARRLV 240 >gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] Length = 240 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 81/243 (33%), Gaps = 30/243 (12%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYAL---TEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83 P+ D + + + + + + + ++ ++F++ + D + + SD+P Sbjct: 4 PSDKDYMLFINQMKK--NIKLYLSHIFNDSDLFTFAYFMMNKDD-----GQPAFMISDYP 56 Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCP------------VFHTLPENITPPAGMDNRYC 131 + K V+ F P F+ + + G Sbjct: 57 AGWLNQYRNYGYQKIDPVMLIACRKFTPFSWKNNPNMPDQNFYKMSSDYALDNGYTFTLH 116 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN--------MFKSYDVHWGKD 183 ++A + I M I+ + +L + + Sbjct: 117 DPDNNLATLTISQMKQNAVFYDIIEKEKDKFQMLLITTHEKVIRFFDARKEQGSESEEEP 176 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L W S GKT +EI+ IL I TV +I +I+ K AI A+ Sbjct: 177 CRLSPREKEVLFWASVGKTYNEISTILSIREGTVKFHIRNIINKLGVANAKHAITRAMEL 236 Query: 244 NIV 246 ++ Sbjct: 237 KLL 239 >gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica] gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica W22703] Length = 244 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 29/230 (12%) Query: 44 SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103 + + G + + ++ L + S++P D V+ + V+ Sbjct: 14 DIKNYIQRRIKTYGDLCY--SYLVMNKKTPLHPTIISNYPLDWVKKYKKNSYHLIDPVIL 71 Query: 104 RPTELFCPVF--------HTLPENITPPAGMD----NRYCSLTFDVARIRIGLMLLFPKG 151 + P ++ + N Y + D + L + Sbjct: 72 TAKDKVAPFAWDDNSVINKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNGSD 131 Query: 152 RIILRDRLWEI--------------GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196 I D EI +L YQ+N K+ + + + + + RE E L W Sbjct: 132 DSISFDERIEINKEKIQMLLIITHEKMLGLYQSNSDKNENRNTQIERDIFSPRENEILYW 191 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S GKT EI++ILGI R+TV +I +++RK AI + ++ Sbjct: 192 ASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 215 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 4/166 (2%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 D + ++ + FDL+ + + L R + + P++ S Sbjct: 48 DPVDNTLYLFDLMEA-DRRTTVLWQSELSRCRQRNRILLLNTPDDYQNQDIESWPNISAV 106 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 F + L + +++ + +A+Y + Y H + LT RE E L Sbjct: 107 FYPSMDE---RTLTEGIKSVIKGECFFSQGVASYLISQSSHYRYHSPEATGLTQREKEIL 163 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + G ++ EIA +L IS NTV ++ ++ +K + K R+ A+++A Sbjct: 164 NKLRAGASNTEIAKLLFISENTVKTHLYNLFKKISVKNRTQAVSWA 209 >gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 210 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 SD R++ D + A+ + A + V + ++ + P + Sbjct: 3 SDATIRILIADDHPVVRQGLAAMIDRQAA---MRVVAEAADGREAVTRYREHLPDVALMD 59 Query: 90 MALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + + D ++ +E + + T + + + Sbjct: 60 LRMPAMDGVEAIVAIRSEFPDSRIIVLTTYDTDEDIYRGLRAGAMAFLLKEAPTEELVEA 119 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + + I + +AA AN + ELT RE+E L + +G+T+ Sbjct: 120 IRAVHAGHKRIPQ-------QVAAKLANRL--------SNPELTARELEVLHLVVKGQTN 164 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L I TV ++ +I+ K R+ A A+R +V Sbjct: 165 KEIAASLFIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRGLV 207 >gi|325916009|ref|ZP_08178302.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325537819|gb|EGD09522.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L+ ++ G ++ +I L IS TV ++ +I+ K + R+ A+ A+R Sbjct: 146 DDALSARETEVLSLVATGCSNKQIGNALSISEETVKAHMKNILAKLGVRDRTHAVTVALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 31/210 (14%) Query: 67 DLFQEQKLDSIVSSD----W-------PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112 D QE V+S+ W P ++ + + + D Y + + P PV Sbjct: 20 DYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQLREDPRFQSLPV 79 Query: 113 FHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------ 161 + +T + Y FD + + L + + E Sbjct: 80 VFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLLIRRNSKPQKTTEEGETPDI 139 Query: 162 ------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 I + A +LT RE L ++EG + EIA L S Sbjct: 140 AELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVR 199 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V Y++ + KT T +R+ + +A+ + + Sbjct: 200 NVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 7/158 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLL 147 S D + + V E+ + + Y + VA + + Sbjct: 59 DTSGVDATRAITNELPDTRVLVLSASGEHNDVLQAVKAGASGYLVKSASVAELVDAVRRT 118 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + G++ M S D+ LT RE E L +++G T+ +IA Sbjct: 119 AEGDPVFTAG---LAGMVLGEYRRMADSPDM-GDPPPRLTERETEVLRLVAKGLTAKQIA 174 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV N++ S +RK R YA+ + + Sbjct: 175 DRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 212 >gi|332299624|ref|YP_004441545.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica DSM 20707] gi|332176687|gb|AEE12377.1| transcriptional regulator, LuxR family [Porphyromonas asaccharolytica DSM 20707] Length = 201 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 2/125 (1%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 PAG + ++ ++ + F I L I L+ + +S + Sbjct: 71 LPAGKEPILVAINHNLLPEDLYKGYSFVCLPTIEPQSL--IQLIQEAEQPDTESLESEEA 128 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE E +TW++ G T+ EIA +L +S +TV + +I K + SG YA+ Sbjct: 129 KQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSPSGLTIYAL 188 Query: 242 RNNIV 246 NN++ Sbjct: 189 MNNLI 193 >gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D L + + G L P I L E ++ A Sbjct: 93 VFEALKAGSSGYLLKDTPSKQLVEAIRAVSSGESFLQPS---IASKVLAEFSRMSGPAAV 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + L+ RE + L W+S G ++ EIA L ++ TV N++++++ K Sbjct: 150 KKAPVQLRE----PLSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVL 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ A A +V Sbjct: 206 DRTQAALMARDLGLV 220 >gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I EG+++ +IA L I+ TV ++ +I+ K R+ A A+R Sbjct: 167 PLTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCADDRTQAAVTALRAG 226 Query: 245 IV 246 +V Sbjct: 227 LV 228 >gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 211 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 17/182 (9%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR-----PTELFCPVFHTLPENITPPAG 125 E+ L+ + +V + L D + + H L E + Sbjct: 41 EEALERL-PHAHAHVVVLDIGLPGMDGVETAARVKAAFPALRIVMLTAHQLREEVFAALA 99 Query: 126 -MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + YC + D A + + + + +A + ++ D G+ Sbjct: 100 SGADAYCLKSGDPALLPLAIQAAAAGSAYLDP-------QVAHLVLGVVRAPD---GEVS 149 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L +++G ++ EIA LG+S +TV ++ I+ K + R+ A A+R Sbjct: 150 ALSDRETEVLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKLSASDRTHAAVKALRAG 209 Query: 245 IV 246 ++ Sbjct: 210 LL 211 >gi|270262679|ref|ZP_06190950.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043363|gb|EFA16456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 950 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + RL + G L + + S+DV+WG L+ RE++ L I+EG+T+ +IA Sbjct: 858 CNEQGAQLRLADKGALTGERL-LQSSHDVYWG----LSERELQVLRLIAEGQTNKDIARS 912 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV ++ + K +R+ A++ A+ ++ Sbjct: 913 LAISAQTVKWHLKNTYAKLNVNSRTQAMSRALEMKLL 949 >gi|88798765|ref|ZP_01114348.1| two-component system regulatory protein [Reinekea sp. MED297] gi|88778528|gb|EAR09720.1| two-component system regulatory protein [Reinekea sp. MED297] Length = 224 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 79/227 (34%), Gaps = 9/227 (3%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 + + +++ +D + +L G H +V E+ L +++ P Sbjct: 1 MSSEDKATIKVMLVDDQNLVREGIKSLLNLAG--HITIVGEAGDGEEALT-VMTELQPDV 57 Query: 86 LVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139 ++ + + + D V + + F ++ + + Sbjct: 58 VLMDIRMPKMDGITAVKTMKEQNIDIPVIILTTFDDHELVLSGIRAGARGFLLKDVSLEA 117 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + + + +I + +S LT RE+E L ++ Sbjct: 118 LVEAIDTVSSGDTLIQPAVTERVIKGFTELQKEGQSKVEKEPVQDPLTQREIEILRLMAG 177 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G ++ EI+ + S T+ N++++I+ K + R+ A+ A+ ++ Sbjct: 178 GYSNKEISRAIFKSEGTIKNHVSNILAKLGVRDRTRAVLKALELGVI 224 >gi|297158992|gb|ADI08704.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V +R G LL P L +R A Sbjct: 93 VYAALSAGASGFLLKDVTPEHLVAAVRMVRSGDALLAPAITRRLVER----------YAR 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++G ++ E+A L +S TV ++A I+ K + Sbjct: 143 RDPDTSALHRDLAALTPREAEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLGLR 202 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 203 DRVQAVVVAYETGLV 217 >gi|302535180|ref|ZP_07287522.1| two component system response regulator [Streptomyces sp. C] gi|302444075|gb|EFL15891.1| two component system response regulator [Streptomyces sp. C] Length = 225 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 3/145 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 Q P + F + + + A + + + ++ Sbjct: 75 QHPKVIILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRR- 133 Query: 163 GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL + + + K+ E LT RE E + +++G ++ EIA L +S TV ++ Sbjct: 134 -LLDRFAPMLPTTAAEPENKEIERLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHV 192 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R + A +V Sbjct: 193 GRILTKLGLRDRVQVVVLAYETGLV 217 >gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4] Length = 223 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L+ + +G + EIA L I+ TV N++++I+ K + R+ A YAVR+ I Sbjct: 158 LTEREWGVLSELGKGLNNREIAEALYITEGTVKNHVSNIISKLEVRDRTQAAIYAVRHGI 217 >gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 +R +S D + + V+ + + L Sbjct: 63 LRMHGMSGVDAIRALRSEFGNVRVLVYSNYAAGEEVYQALKAGASGFVV----KEMALER 118 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R + + +A + +L+ RE++ L +++G+++ EI Sbjct: 119 LLEAIRKVHAGEQYVPPEIAMRMGERLMA---------QLSPRELDVLKLVAKGRSNKEI 169 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L + T ++A+I+ K R+ AI AVR I+ Sbjct: 170 AAELHVVEGTAKIHVANILTKLGVSDRTQAIVVAVRRGII 209 >gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 247 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 52 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAAQGVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQKDFDQRIREKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 232 RTAKQAVYKAINMGMV 247 >gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] Length = 217 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 10/181 (5%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-TLPENITP 122 V +++ +IV S P L E + + L+ L Sbjct: 44 VNLPSTRDEHYVAIVDSSLP-------ELPEVKQTLSELEHVDATVLVNAEPNLRIESLL 96 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 D ++ +GL + + RD L + L+ + ++ Sbjct: 97 TWSNLKGLFYFEDDFDKVMMGLKGILNGENWLSRDILNQ--LIGHLLSLNNTVGELETKL 154 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + ELT RE++ L+ + +G ++ +IA L +S +TV +++ SI RK K R AI +A R Sbjct: 155 EMELTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214 Query: 243 N 243 N Sbjct: 215 N 215 >gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 233 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T LT V G + P ++ L E LA+ Sbjct: 101 HADVLEAVKSGATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLV---LGEYRRLASD 157 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 158 PAPVA----SDEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 213 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 214 QLHNRVELVRYAIERGL 230 >gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T LT V G + P ++ L E LA+ Sbjct: 82 HADVLEAVKSGATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLV---LGEYRRLASD 138 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 139 PAPVA----SDEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 194 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 195 QLHNRVELVRYAIERGL 211 >gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22] gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei 87.22] Length = 236 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 5/164 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143 VR + + + V T P++ + + R+ Sbjct: 64 VRMPGIDGIEATARIAAAGPAARVLVLTTFPDDTYVWRALRAGASGFLLKRTAPERLIDA 123 Query: 144 LMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + + +I + + + + LT RE + L I+EG Sbjct: 124 VRTVAAGDTLIDPSVTRALVEHFVLGERTARGPADAADLAGLRGLTAREAQVLRLIAEGL 183 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ E+A +LGI+ +T ++ ++ K + R+ A+ A R+ + Sbjct: 184 SNAELAELLGIAESTAKTHVKRVLHKIGARDRAQAVVLAYRSGL 227 >gi|227505299|ref|ZP_03935348.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198097|gb|EEI78145.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 217 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 6/161 (3%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 M P L V + I Y + + + + Sbjct: 57 MPDGGGLAVLRGAPGPVYLALSVSDAAEDVIALIRAGARGYVTKNISGPELAAAVRRV-H 115 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSD 204 +G RL L A + +S + + LT RE+E L ++ G T Sbjct: 116 EGDAYFSPRLAGFVLDAFASGALAESKPGAPDESVDPAVDALTRRELEVLRLLARGYTYR 175 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EI L IS TV + ++I+RKT R +A +++ Sbjct: 176 EIGERLFISVKTVETHASNILRKTQQSNRHQLTRWAASHDL 216 >gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 896 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 70/187 (37%), Gaps = 13/187 (6%) Query: 55 YVGASHFLLVRWDL----FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 YV A+H+L + ++ + ++ D V+ + + ++ ++ Sbjct: 712 YVIANHYLSRNMSNQALSYSQKLSLLALENNQKIDQVKALGIQCLSQFSTGNEKKAFRLV 771 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 L G + L + + + L L + ++ E L + Sbjct: 772 TQMLELAS----QVGCKQVFFELPNHIEALLLKLNLHSDENQLSS-----EGNRLLTWLI 822 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + K + L+ RE + +S+G T+ +I+ LGIS NTV ++ ++ +K Sbjct: 823 SELKKSHQAQNNPWHLSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLGV 882 Query: 231 KTRSGAI 237 R A+ Sbjct: 883 INRQQAV 889 >gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci] Length = 246 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 20/195 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + + ++ S++P ++ S +++ P F E + D Sbjct: 52 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREAECCSGRRTDDFLKR 111 Query: 132 SLTFDVARIRI-----------GLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFKS 175 S + ++ L L + + R+ E L + + K+ Sbjct: 112 SAKYQLSSGATFTLHDASWLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKT 171 Query: 176 YDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 H +L+ RE L W++ GK+ EIA I IS TV +++++ K + Sbjct: 172 RAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVR 231 Query: 232 TRSGAIAYAVRNNIV 246 T A+ A+ +V Sbjct: 232 TAKQAVYKAINMGMV 246 >gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24] gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24] gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24] Length = 228 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 2/156 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + L F + + ++ + ++ Sbjct: 70 GIEATRRITTATPEIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAG 129 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ + + + ++ + ELT RE E L I++G ++ EIA L Sbjct: 130 DALLAPGITRRLIAEFSRLDDRPRAP--LKARVGELTERETEVLALIAQGLSNAEIAQRL 187 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ TV ++ I+ K + R+ A +A + +V Sbjct: 188 VVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 223 >gi|311106149|ref|YP_003979002.1| transcriptional regulator DegU [Achromobacter xylosoxidans A8] gi|310760838|gb|ADP16287.1| transcriptional regulatory protein DegU [Achromobacter xylosoxidans A8] Length = 223 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 L + + +LT + R G ++ L ++ LAA Sbjct: 93 QALRDGARGYLVKNIDADALTAAIRRAAGGEPVIAESMTAKLVEQFRGQASLAAQAPQAA 152 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S + H LT RE + + W++ G ++ IA L +S +TV ++ ++++K +R Sbjct: 153 GSAERHR-----LTARETQIVQWLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSR 207 Query: 234 SGAIAYAVRNNI 245 YAV + + Sbjct: 208 VQVAVYAVEHGL 219 >gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 212 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G + EIA L IS+ TV N+I +I+ + + R+ A +A ++ Sbjct: 150 ELTPREQEILRLIATGANNREIAQTLYISQKTVKNHITNILSRLNLRDRTQAAIWANSHS 209 Query: 245 I 245 I Sbjct: 210 I 210 >gi|29830013|ref|NP_824647.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607123|dbj|BAC71182.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 108 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSP-------RL 160 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 161 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 220 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 221 VLRKLQLSNRHELTRWATARRLV 243 >gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans] Length = 210 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 240 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L + + + + Sbjct: 97 VMAAIHTGASGFLLKDTEPETLLNSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASE 156 Query: 172 MFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + + K +LT RE E L I+ G ++ EIA L IS TV ++A Sbjct: 157 EENTENASRSKQNANAYNSYLNDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVA 216 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ +A N +V Sbjct: 217 HILGKIDARDRVQAVVFAYENGLV 240 >gi|294628934|ref|ZP_06707494.1| two-component system response regulator [Streptomyces sp. e14] gi|292832267|gb|EFF90616.1| two-component system response regulator [Streptomyces sp. e14] Length = 226 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 12/224 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 + R++ D L + VG + L +EQ+ D +V D Sbjct: 1 MTIRVLLADDQALLRSAFRVLVDSEPDMEVVGEASEGAAAVRLAREQRAD-VVLMDIRMP 59 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 +A + L + F + + + + + + Sbjct: 60 GTDGLAATRMISADPALAHVRVVILTTFEVDDYVVQALRAGASGFLGKGSEPEELLSAIR 119 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKT 202 + ++ + GL+A + A G+ LT RE E L ++ G + Sbjct: 120 IAAQGEALLSP--VATKGLIARFLAQGDADDGRDPARSGRLEALTVREREVLVQVAGGHS 177 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +DEIA L +S TV ++ M K + R+ + A + +V Sbjct: 178 NDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 221 >gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 43/80 (53%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A A + + D K +LT RE+E L ++EG T+ +IA L IS TV ++ +IM Sbjct: 132 ALIAKLNQLGDSDTVKLADLTDRELEVLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIME 191 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K R+ + YA+R ++ Sbjct: 192 KLDLHDRTDLVKYAIRRGMI 211 >gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 228 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 6/183 (3%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 D +E + D IV D V + +E L L F Sbjct: 42 DRAREHRPDVIVM-DVRMPGVDGLTATETICADPDLTGTRVLILTTFENDEHVARALRAG 100 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKD 183 + + + + + ++ L++ + A + Sbjct: 101 ASGFLGKYVTTDALLEAIRTVATGESLLSPGATK--ALISQFLATPPPNTAAPQPTTPGI 158 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E + ++GK++DEIA L +S TV +I M K + R+ + A +N Sbjct: 159 RDLTNREREAMKLAADGKSNDEIARELNLSALTVRTHIQRAMTKLGARDRAQLVVLAYKN 218 Query: 244 NIV 246 +V Sbjct: 219 GLV 221 >gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 3/143 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + + + ++ L Sbjct: 77 PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTAIRSVHSGDAVVAPSTTRR--L 134 Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L + + + K+ E LTGRE E + +++G ++ EIA L +S TV ++ Sbjct: 135 LDRFAPMLPTTGKEPQHKELERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGR 194 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R + A +V Sbjct: 195 ILTKLGLRDRVQVVVLAYETGLV 217 >gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora] Length = 240 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + + RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAV 237 Query: 244 NIV 246 ++ Sbjct: 238 GLI 240 >gi|302537555|ref|ZP_07289897.1| two-component system response regulator [Streptomyces sp. C] gi|302446450|gb|EFL18266.1| two-component system response regulator [Streptomyces sp. C] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK Sbjct: 142 MHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKL 201 Query: 229 ATKTRSGAIAYAVRNNIV 246 T R+G +A A+R I+ Sbjct: 202 GTGDRAGMVAVALRTGII 219 >gi|239979247|ref|ZP_04701771.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 12/175 (6%) Query: 82 WPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYC 131 P ++ + + E D + RP + F + + Sbjct: 48 HPDIVLMDVRMPEMDGLTATRELLSPEPGTAHRPKVIMLTTFDVDDYVYEALHAGASGFL 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A + + ++ ++ + + + LT RE Sbjct: 108 LKDSPPASLVSAVRVIHGGNALLDPAVTRRF--IEDIVRRRPRPRRDPRLQLNGLTPRET 165 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++ EIA L ++ TV +I+ I+ K + R+ A+ A + +V Sbjct: 166 EVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESGLV 220 >gi|297203085|ref|ZP_06920482.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712083|gb|EDY56117.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK Sbjct: 142 MHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKL 201 Query: 229 ATKTRSGAIAYAVRNNIV 246 T R+G +A A+R I+ Sbjct: 202 GTGDRAGMVAVALRTGII 219 >gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L+ ++ GK++ EI V L IS TV +++ SI K +R+ AIA A R + Sbjct: 157 LTSRELAVLSLLALGKSNKEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASRRGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 227 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 5/154 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ + V R ++ + + E+ ++ S + L Sbjct: 74 GMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTVSAEELIYALQGA 133 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 R + G +A + V G D +T RE E L I+EGK++ +IA L Sbjct: 134 YRGMP----VMTGEVAQALTRGLRQRTVQ-GDDSGMTEREKEVLLLIAEGKSNKDIAEEL 188 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 IS TV ++++++ K + R+ YA R Sbjct: 189 HISIKTVKTHVSNLLMKCELEDRTQLAIYAHRQG 222 >gi|226359681|ref|YP_002777459.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226238166|dbj|BAH48514.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 3/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + + + + + ++ LL+ + + Sbjct: 85 FDLDEHAMGALRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRR--LLSRFLDDG 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE E L ++ G ++ EIA L +S +T+ +++ I+ K + Sbjct: 143 PAPLRDPEVLDV-LTEREREVLQLVATGLSNTEIAAQLFLSESTIKSHVGRILTKLNVRD 201 Query: 233 RSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 202 RVQAVVLAYETGLV 215 >gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D +LT RE+E + ++ G+++ IA L +S TV ++ I RK R+ A++ A Sbjct: 147 SPDPDLTTREIEVIRLLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEA 206 Query: 241 VRNNIV 246 VR ++ Sbjct: 207 VRRGLL 212 >gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 218 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 82/220 (37%), Gaps = 11/220 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + + L + S F +V + + + P ++ + Sbjct: 1 MTIRILLIDDHTLFRSGIRLLLQR--QSDFEVVDEAADGLEGIK-LAKRHQPDVILLDLN 57 Query: 92 LSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGLM 145 + +L + L V T+ E Y + + G+ Sbjct: 58 MPGLSGLETLQLLVQDLPLAAVVVLTVSEEADELKAALRDGARGYLLKNIEAETLVAGIR 117 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 G ++ DR+ L+A ++A LT RE E + ++ G+++ E Sbjct: 118 R-AAAGEPVISDRMT-AKLVAHFRAPEKAPPAATTPMPDRLTPREREIVKGLARGESNKE 175 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ ++++K +R YAV + + Sbjct: 176 IARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 215 >gi|298491629|ref|YP_003721806.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233547|gb|ADI64683.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 238 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + LT RE+E L I EG ++ IA L I+ TV ++ +I+ K R+ A A+ Sbjct: 173 EPYSLTERELEVLQLIVEGYSNAVIAQRLFITIGTVKTHVRNILNKLCADDRTQAAVRAL 232 Query: 242 RNNIV 246 R+ IV Sbjct: 233 RSGIV 237 >gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G +L P I R + E LA Sbjct: 90 VYEALRAGASGFLLKDASADQLAEAVRVVAAGDAMLAPG---ITRRLIAEFSRLA----- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +LT RE E L I+ G ++ EIAV L ++ TV ++ I+ K + Sbjct: 142 -PEPRTPLKERVGDLTERETEVLALIARGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A + +V Sbjct: 201 DRTQAAVFAYESGLV 215 >gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T A + G+ + + RL + Sbjct: 80 PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 137 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + LT RE+E L ++ G T EIA L IS TV + +++ Sbjct: 138 LDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 197 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RKT R+ +A R I Sbjct: 198 LRKTQQSNRNALTRWAHRRRI 218 >gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42] Length = 246 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 24/191 (12%) Query: 63 LVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-P 117 + R+ L +D I+ S PFD R + ++E + + H + Sbjct: 65 VSRYLLNDYINVDPIIREGFSRQLPFDW-REIDITETAQ--------EFMVDAELHGIGT 115 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 ++ P +R L+ + + L+ R L + L E+G L + ++ Sbjct: 116 NGVSVPIVDKSRRSLLSINSQKSDEEWTLI---ERQFLPEWL-ELGFL----LHRKAVFE 167 Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 +H D L RE+ECL W S GK S +I ILG+S +T Y+ S K T S Sbjct: 168 LHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSA 227 Query: 236 AIAYAVRNNIV 246 AIA+AV N++ Sbjct: 228 AIAHAVHLNLI 238 >gi|297626942|ref|YP_003688705.1| Two-component system, regulatory protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922707|emb|CBL57284.1| Two-component system, regulatory protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 8/213 (3%) Query: 39 LDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSI----VSSDWPFDLVRCMALS 93 +D + + + Y G ++LDS+ + D + + Sbjct: 7 VDDQEMIRKGLRVIIDAYPGLDVVAEAGDGFTAVRRLDSVQVDVILMDLNMPGMDGVEAV 66 Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 + + + P L F + N + + G+ + Sbjct: 67 RRIREARGPEGPRILVLTTFDQDENVLAAMRAGANGFLGKGAGPDELAEGIRRVAAGAHA 126 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGI 212 + + + L++ D K FE LT RE+E + + EG + EI + I Sbjct: 127 LSDNAIG--ALVSHVSDPHAVPPDPDKAKLFEGLTPRELEVVRLVVEGLDNAEIGRRVFI 184 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S T ++ M K + R+ ++ AV+ I Sbjct: 185 SPFTAKTHVNRAMAKVGARDRAQLVSLAVQAGI 217 >gi|296120127|ref|ZP_06838681.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes DSM 20306] gi|295967281|gb|EFG80552.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes DSM 20306] Length = 228 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 54/152 (35%), Gaps = 14/152 (9%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + A + + + G RL G Sbjct: 79 PKFLALSVSDAAEDVIALIRAGARGYVTKNIAGAELAEAVARV-HSGDAYFSPRL--AGF 135 Query: 165 LAAYQANMFKSYDVHWGKDFE-----------LTGREVECLTWISEGKTSDEIAVILGIS 213 + A+ + D G D E LT RE+E L ++ G T EI L IS Sbjct: 136 VLDAFASGEPAPDPAGGPDSEPEPISDPVVDALTRRELEVLRLLARGYTYREIGQELFIS 195 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV + ++I+RKT R +A ++ Sbjct: 196 IKTVETHASNILRKTQQSNRYQLTRWAADRDL 227 >gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430] gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430] Length = 240 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + + RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAI 237 Query: 244 NIV 246 ++ Sbjct: 238 GLI 240 >gi|239929404|ref|ZP_04686357.1| two-component system DNA-binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437730|ref|ZP_06577120.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340625|gb|EFE67581.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 241 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%) Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 +RP L V + I G Y + T A + + + + Sbjct: 102 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGADLIDSVFRVQEGDAVFSP----- 156 Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D + LT RE E L I+ G EIA L IS TV + Sbjct: 157 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 214 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 215 HVSAVLRKLQLSNRHELTRWATARRLV 241 >gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 243 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 2/153 (1%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 E + +R F N++ + T +GL + Sbjct: 92 EARSAKSPKERRLFDDALSFKIRTGLTVRIPSSQNQFAAFTLAADDRSLGLDRFIETSQD 151 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +L + + A A + LT RE +CL WIS+GKT +IA +LG+S Sbjct: 152 ML--EMVGLTYHAHVSAARIGRTPPDGQQGSPLTQRERQCLAWISDGKTMQDIAELLGVS 209 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++ + R A T A+A A R ++ Sbjct: 210 PRGVKFHLDNARRNLAALTLPHAVALAFRQGLL 242 >gi|328885874|emb|CCA59113.1| two-component regulator [Streptomyces venezuelae ATCC 10712] Length = 221 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK Sbjct: 144 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 203 Query: 230 TKTRSGAIAYAVRNNIV 246 T R+G +A A+R I+ Sbjct: 204 TGDRAGMVAVALRTGII 220 >gi|330811658|ref|YP_004356120.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379766|gb|AEA71116.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 849 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + + RL + L + + + +D L+ RE+E L I++G ++ Sbjct: 748 VTCWRAQQALCELRLRQPE-LVRWAQSAEQVEPPASAEDTLLSHRELEVLELIAQGHSNQ 806 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +IA L IS +TV + I K + R+ A+A A Sbjct: 807 QIAERLFISLHTVKTHARRIHSKLGVQRRTQAVAKA 842 >gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 214 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 42/82 (51%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++A + + ELTGRE++ L +++G+++ EIA L ++ TV ++A Sbjct: 130 VMARLVDSYVGHQEPPPPGLAELTGRELDVLRCLADGRSNAEIAGELFLAETTVKTHVAR 189 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 I+ K + R A+ A R + Sbjct: 190 ILAKLGVRDRVQAVVIAHRCGL 211 >gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 11/193 (5%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVF 113 + V + + + + P ++ + + D + + L F Sbjct: 24 MDVVAEAADGRDAVELTRTHRPDIVLMDIRMPGTDGLAATAEICADPALRGTRVLILTTF 83 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 T + + + G+ + ++ L+ + + Sbjct: 84 ETDEHVARALRIGASGFLGKDVTAEELLDGIRTVAAGDALLSAAATR--SLITRFLDSPD 141 Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +D LT RE E +++GK+ EIA L +S TV ++ K + Sbjct: 142 PRASPVPPEDLAALTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARD 201 Query: 233 RSGAIAYAVRNNI 245 R+ +A+A R+ + Sbjct: 202 RAQLVAHAYRSGL 214 >gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1] gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T A + G+ + + RL + Sbjct: 80 PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 137 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + LT RE+E L ++ G T EIA L IS TV + +++ Sbjct: 138 LDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 197 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RKT R+ +A R I Sbjct: 198 LRKTQQSNRNALTRWAHRRRI 218 >gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703] gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 236 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 19/191 (9%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF----------HTLPENITPPA 124 D ++ S++P + V + V+ P LP+ Sbjct: 43 DMVIISNYPSEWVNTYKKRNYNSIDPVILTAVNKVSPFSWNDNMVRNSRLKLPQLFEHAR 102 Query: 125 GMD--NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------NMFKS 175 D N Y + D L L ++ ++ +L Sbjct: 103 QYDICNGYTFVLHDQNNHMATLSLAADNIENMIHGNQEKLQMLLIATHEKTLSLYRELAE 162 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 H D + RE + L W S GKT EIA+ILGI +TV +I +++RK Sbjct: 163 SRQHRSNDMLFSERENDILYWASMGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKH 222 Query: 236 AIAYAVRNNIV 246 AI + N++ Sbjct: 223 AIRMGIEMNLI 233 >gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] Length = 208 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG + IA LGIS +T ++ +I+ K +R+ AI A R Sbjct: 145 PLTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 204 Query: 245 IV 246 +V Sbjct: 205 LV 206 >gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain Length = 91 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I++G ++ EIA I+ TV ++++I+ K + R+ A+ YA ++N+ Sbjct: 30 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 89 Query: 246 V 246 + Sbjct: 90 I 90 >gi|118464557|ref|YP_883346.1| LuxR family transcriptional regulator [Mycobacterium avium 104] gi|118165844|gb|ABK66741.1| transcriptional regulator, LuxR family protein [Mycobacterium avium 104] Length = 523 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 38/89 (42%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L + A A + LT RE+E L ++ G ++ EIA L IS T Sbjct: 428 ELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAALVISEKTA 487 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N++ K R GA YA+++ +V Sbjct: 488 RNHVERTYAKIGVSNRIGASMYALQHGLV 516 >gi|29829281|ref|NP_823915.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29606388|dbj|BAC70450.1| putative LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 1157 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 2/153 (1%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 SE + L+RP +L V H L E++ +G D+ + ++ R+ + Sbjct: 995 SETVTAFEPLERPYDLAR-VRHRLAESL-LASGADDDARARATELLRLAGAVADHLGARP 1052 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + L +S + LT RE + L ++ G+++ +IA L I Sbjct: 1053 LAESVALLAQRARLTLSGTTRQSPPADPAEALGLTSRERDVLRLVAAGRSNRQIAEKLFI 1112 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S T + ++++I+ K R A A A R + Sbjct: 1113 SPKTASVHVSNILAKLGVAGRGEAAALAHRMRL 1145 >gi|21224361|ref|NP_630140.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|256784453|ref|ZP_05522884.1| two-component regulator [Streptomyces lividans TK24] gi|289768332|ref|ZP_06527710.1| two-component system response regulator [Streptomyces lividans TK24] gi|3169043|emb|CAA19241.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|289698531|gb|EFD65960.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK Sbjct: 143 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 202 Query: 230 TKTRSGAIAYAVRNNIV 246 T R+G +A A+R I+ Sbjct: 203 TGDRAGMVAVALRTGII 219 >gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 262 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 2/142 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L H + + T + I + G ++ L L Sbjct: 80 PRILVLSSAHRDEHAYDVLRAGADGFLPATTTPDEL-IAALFTVAAGDAVVSPGLAR-AL 137 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + A + + G+ +LT RE + L ++ G+++ EIA L I+ TV ++++ I Sbjct: 138 IHAVRHGPRPEVPIAKGRLEDLTERERDILVAVASGRSNAEIAAQLSIATTTVKSHVSRI 197 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A + +V Sbjct: 198 LTKIGARARVQAVVFAYESGLV 219 >gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola] gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] Length = 247 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 +K I+ S++P ++ S +++ P F N D+ Sbjct: 52 RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L K + R+ + L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H + +L+ RE + L W++ GK EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPPTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A++ +V Sbjct: 232 RTAKQAVYKAIKMGMV 247 >gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 214 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 N Y D + + + + G I I +A Q + + Sbjct: 93 RAGANGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRI--IAELQPSQPTEAHKEMPPE 150 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE++ L +++G T+ EIA L +SR TV ++ +I RK A +R+ A++ A Sbjct: 151 AILSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARAR 210 Query: 244 NIV 246 ++ Sbjct: 211 GLL 213 >gi|254776638|ref|ZP_05218154.1| transcriptional regulator, LuxR family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 523 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 38/89 (42%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L + A A + LT RE+E L ++ G ++ EIA L IS T Sbjct: 428 ELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAALVISEKTA 487 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 N++ K R GA YA+++ +V Sbjct: 488 RNHVERTYAKIGVSNRIGASMYALQHGLV 516 >gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] Length = 243 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L + + + + Sbjct: 100 VMAAIHTGASGFLLKDTEPETLLNSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASE 159 Query: 172 MFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + + K +LT RE E L I+ G ++ EIA L IS TV ++A Sbjct: 160 EENTENASRSKQNANAYNSYLNDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVA 219 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ +A N +V Sbjct: 220 HILGKIDARDRVQAVVFAYENGLV 243 >gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 260 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 30/244 (12%) Query: 25 HLPTRSDLLAR-----MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD----------LF 69 + + +DL +R + + + + L + F L+R +F Sbjct: 24 EISSDTDLSSRKPRKSVGKIANRIDGYRLLKDLAQEYSFDDFALLRLPQSLKSANFRSIF 83 Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--ENITPPAGMD 127 L I + + L VL+ P L + I G+ Sbjct: 84 DLHSLSEIE--------LEMLDLEGGCSAEPVLEHLMHWAVPYELRLTSNDAIDLAKGLL 135 Query: 128 NRY-----CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 Y + + + F + + L A + + ++ Sbjct: 136 RHYGINVCVAFNLPSLTLTRYAIAFFARKDTPENRNTGALMLDALACFDRLNMHLLNADN 195 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 E R+ L+ SEG TS +IAV L IS +TVN +AS++R+ R IA A+R Sbjct: 196 SDEFDARDAAILSLTSEGLTSQQIAVELKISEHTVNANVASMIRRLGVLNRPQLIATAIR 255 Query: 243 NNIV 246 ++ Sbjct: 256 KGLI 259 >gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 167 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 7/159 (4%) Query: 92 LSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 L + + +R P L F + + + + + + + Sbjct: 4 LDGVEATRRIHERAGAPRVLILTTFDLDEYAFSALRAGASGFMLKDVPPSELVAAIRAVH 63 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207 ++ L A M + + LTGRE E + +++G ++ EIA Sbjct: 64 SGDAVVAPSTTRR---LLDRFAPMLPGTGPATHPELDRLTGREQEVMRLVAQGLSNGEIA 120 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S TV ++ ++ K + R + A IV Sbjct: 121 ARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGIV 159 >gi|290958411|ref|YP_003489593.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647937|emb|CBG71042.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + + D + E P F + + + + Sbjct: 55 DVRMPKLDGVEATRRICAEQDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + + ++ LL + + + K+ E LT RE E + +++G Sbjct: 115 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPSTGSEPRHKELERLTEREREVMILVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|239944642|ref|ZP_04696579.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991106|ref|ZP_04711770.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448106|ref|ZP_06587496.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351053|gb|EFE77957.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D + L V + G LL P+ G L A A Sbjct: 92 VYDALTAGASGFLLKDATFPELLHAVRVVAGGHALLAPEI----------TGRLIAEFAR 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S + LT RE E L I+ G ++ +IA L I+ +TV +I + K + Sbjct: 142 QRVSAPPKRSIE-GLTAREAEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 201 DRAQAVILAYELGLV 215 >gi|239943689|ref|ZP_04695626.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990140|ref|ZP_04710804.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447153|ref|ZP_06586543.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291350100|gb|EFE77004.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 231 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 96 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP-------RL 148 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231 >gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 225 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D +L V + G +L + R L E+ Sbjct: 97 FGALEAGASGFLLKDAEPATLVEAVRSVAAGHGML---ANALTRRVLREV------VTRR 147 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE++ L +++G +++EIA L + +TV +++A M K ++ Sbjct: 148 RTQPVTAARASELLTPRELDILLLLAQGMSNEEIARELYLEVSTVKSHLARAMPKLGVRS 207 Query: 233 RSGAIAYAVRNNIV 246 R A+ +A +N IV Sbjct: 208 RLQAVVWAYQNGIV 221 >gi|170751882|ref|YP_001758142.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658404|gb|ACB27459.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +TGRE E L W+S GK+S +I ILG+S TV ++ I K + R+ A Sbjct: 238 RLRARLPVTGREAEVLLWLSRGKSSRDIGEILGLSHRTVTKHLEGIYAKLGVENRTAASI 297 Query: 239 YAVRN 243 A R+ Sbjct: 298 IAARH 302 >gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 239 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 P+F + P+G F A + I ++ R AA+ Sbjct: 100 LPLFEDALAHGLGPSGYSIPIIDKNFRRALLSINSFETGEAWSDLVN-RHKAAWAEAAFL 158 Query: 170 ANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + ++H G D L+ RE+ECLT + GK +IA+ILG+S +TV Y+ S K Sbjct: 159 IHDMAMKEIHGGNDQALHLSPREIECLTLAARGKDHKDIALILGLSGHTVQGYLKSARHK 218 Query: 228 TATKTRSGAIAYAVRNNIV 246 + AIA A+R+ I+ Sbjct: 219 LGSVNIPQAIAEAIRSRII 237 >gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 215 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 13/206 (6%) Query: 42 TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101 +S + E VG ++ + ++ + D ++ + M E + Sbjct: 17 GLSLFLGTREEMEIVGEANNGAEALEKVKQLRPDVVLMDLM----MPVMDGVEATRRIKE 72 Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 + ++ + +++ P L A + + +G+ L + Sbjct: 73 IHPDVKVVVLTSFSDQDHVLPAIRAGAEGYQLKEIEAEELVATIRAAHQGKTQLHPQ--- 129 Query: 162 IGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVN 218 A + F S + + L T RE E L I+EG ++ EIA L I+ TV Sbjct: 130 ---AAGHLVQQFTSESTGFREQDGLEVLTPREQEVLRLITEGMSNKEIAANLVIAEKTVK 186 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244 +++ I+ K + R+ A +A++ Sbjct: 187 THVSGILNKLDLQDRTQAAIHAMKQG 212 >gi|261408873|ref|YP_003245114.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928799|ref|ZP_08282638.1| response regulator protein VraR [Paenibacillus sp. HGF5] gi|261285336|gb|ACX67307.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937442|gb|EGG33863.1| response regulator protein VraR [Paenibacillus sp. HGF5] Length = 217 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + G + LT RE E L I+EGK++ EI L IS TV ++++++ K + R+ Sbjct: 144 RRHMVNGDESGLTEREKEVLLLIAEGKSNKEIGEELHISIKTVKTHVSNLLMKCELEDRT 203 Query: 235 GAIAYAVRNN 244 YA R Sbjct: 204 QLAIYAHRKG 213 >gi|271964734|ref|YP_003338930.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507909|gb|ACZ86187.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 5/142 (3%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + ++ + ++ ++ L Sbjct: 78 PKVLILTTFDLDDYVYEALRAGASGFLLKDASAQQLAEAVRVVAAGEALLAPSVTRR--L 135 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ + + ++T RE E L I++G+++ EIA L +S TV ++ I Sbjct: 136 ISEFARVGPRRPRGRLD---DITERETEVLALIAQGRSNQEIAEELVLSEQTVKTHVGRI 192 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ AI +A +V Sbjct: 193 LAKLNLRDRAQAIVHAYETGLV 214 >gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 2/177 (1%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + +V D +A + L + F + + + Sbjct: 46 ETQADVVLMDIRMPGTDGLAATRLISADPGLTHVRVVMLTTFEVDEYVVQSLRAGASGFL 105 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGR 189 + + + + ++ + Q + + + LTGR Sbjct: 106 GKGAEPEELLNAIRVAAGGEALLSPAATKGLIAKFLAQGDGLDDERDPARAERLDALTGR 165 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L ++ G ++DEIA L +S TV ++ M K + R+ + A + +V Sbjct: 166 EREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 222 >gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi pv. savastanoi] Length = 247 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++SS++P ++ S +++ P F N D+ Sbjct: 52 RNVKPVISSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWMAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 232 RTAKQAVYKAINMGMV 247 >gi|302554896|ref|ZP_07307238.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472514|gb|EFL35607.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK Sbjct: 143 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 202 Query: 230 TKTRSGAIAYAVRNNIV 246 T R+G +A A+R I+ Sbjct: 203 TGDRAGMVAVALRTGII 219 >gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] Length = 229 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 9/215 (4%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 ++ R+ + +G + +L+ + +E SIV + + L + Sbjct: 17 VEDEYVIQRRLKIILTNLGYNEDVLLFANTVKEAY--SIVQQQPIALALVDLGLPDGSGI 74 Query: 99 Y---NVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 + ++ + V T Y D + + + + G Sbjct: 75 SIIEKIREQDAQALILVVSAWSTQDSLFRAIQAGATGYVLKERDDVEVALAIRSILRGGA 134 Query: 153 IILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 I EI ++ + + LT RE E L+ +++G ++ EIA L Sbjct: 135 PIDPFVAREILKQISIPTISGTVEQNRPAADQETLTQREQEILSLVAQGLSNREIAEQLC 194 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +SR TV ++I I RK + R+ A++ A I+ Sbjct: 195 VSRYTVESHIKHIYRKLSVSKRTKAVSTARHLGIL 229 >gi|258653548|ref|YP_003202704.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556773|gb|ACV79715.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 223 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 3/145 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSL--TFDVARIRIGLMLLFPKGRIILRDRLWEI 162 ++ V T ++ A + + + + +G +L R + Sbjct: 76 LAQVKVLVLTTFEQDDYILAALQAGASGFLGKGASPTQLLDAIRVIARGESLLSPRATRV 135 Query: 163 GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + A A + D G D LT RE E + +++G ++DEIA L +S T ++ Sbjct: 136 VIERALAAPGAATPDEAAGPDLSVLTEREREIVGLVAQGLSNDEIAARLYLSPLTAKTHV 195 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 M K + R+ + A R +V Sbjct: 196 NRAMTKLGARDRAQLVVLAYRAGLV 220 >gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 245 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I +G ++ EIA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 183 PLTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSG 242 Query: 245 IV 246 +V Sbjct: 243 LV 244 >gi|320009015|gb|ADW03865.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 231 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 96 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLIDSVFRVQEGDAVFSP-------RL 148 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231 >gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 788 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT R+VE L ++EG T EIA L IS TVN ++ I K TRS A YAV Sbjct: 727 QLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAVERK 786 Query: 245 IV 246 ++ Sbjct: 787 LI 788 >gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 215 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + + G ++L IL RL E A Sbjct: 94 VISALKRGADGYLLKDMEPEDLLKALHQAAAGQIVLSEALTPILVARLRE--------AQ 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ D++ +LT RE E L IS+G T+ IA L IS +TV ++ +++K K Sbjct: 146 PGQTRDIN-----QLTRREREILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKMNLK 200 Query: 232 TRSGAIAYAVRNNI 245 +R A +A++N + Sbjct: 201 SRLEAAVWALQNGL 214 >gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans] Length = 210 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + ++R + L Y H K+ L+ RE + L W+ GKT E+AVIL I Sbjct: 115 MEKNRSKIVSFLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ ++M+K + A+ ++ Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208 >gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans] gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans] gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans] Length = 210 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + ++R + L Y H K+ L+ RE + L W+ GKT E+AVIL I Sbjct: 115 MEKNRSKIVSFLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ ++M+K + A+ ++ Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208 >gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 224 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 13/189 (6%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-------LFCPVFHTLPEN 119 + +Q+ + P ++ +AL + +L R E + + + Sbjct: 27 EAGDDQEALRLAQELRPDVILLDLALPRRTG-LELLPRLREELPETQVVILTYSASEQDA 85 Query: 120 ITPPAGMDNRYCSLTFD----VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 I Y + ARIR P ++R+ L + + Sbjct: 86 IAALQAGAAGYLVKSMAPEALAARIREAFRGDVPVSGSVMRNVLRAMSTPSELPPPTPGG 145 Query: 176 YDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + L+ RE + L I+ G T+ EIA LG+S NTV NY+ SI+ K + R Sbjct: 146 QPGAGEAAESLLSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRV 205 Query: 235 GAIAYAVRN 243 A A+A+ N Sbjct: 206 QAAAWALNN 214 >gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans] Length = 210 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 141 HQKKNAFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200 Query: 239 YAVRNNIV 246 ++ Sbjct: 201 LGTELRLL 208 >gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 8/160 (5%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 ++ M K T++ H E I P + L A + + Sbjct: 59 MKGMDGLTATKDILAASPKTKVILLTQHENKEYILPALKIGAAGYVLKRAAADEVVNAIR 118 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 +GR L + +I + A + + LT RE E L +++G T++EI Sbjct: 119 TTYQGRSFLDPEISDIVVNAYRHGS--------EDEYETLTEREREILILLAKGHTNNEI 170 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A IL IS TV+ + +++M+K ++ YA++ ++ Sbjct: 171 APILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRGLI 210 >gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 239 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 13/221 (5%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93 + D R+ A +G F+L +E ++ I V DW F + Sbjct: 16 IEGGDSLSVIQDRIRAFAGPLGYDRFVLFTASAAREDVVERIYWVEGDW-FGTGEAVDAL 74 Query: 94 EKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + V + E+ P F T L + + P G + G M Sbjct: 75 TYIRRCPVNRHILEVSEPFFWTKTRSESGELYQVVRTPRGRGVHGLQIPIFGPSGLEGAM 134 Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L + + L+ AA+ + + +L+ RE E L W + G+ Sbjct: 135 SLGGERIDASPQARLALSLVGTAAFLSARRLLEAPNSSATAKLSHREREILAWTAAGRRQ 194 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +IA LG+S TV N++ I R+ A T + AI A+RN Sbjct: 195 ADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNG 235 >gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 244 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 7/165 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIG-L 144 VR ++ + + Q + T + AG+ D + Sbjct: 79 VRMPGMNGIEATERIAQECPGTRVLILTTFDLDEYAFAGLRAGASGFLLKDTRPTELAEA 138 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200 + G ++ R+ + +L + A++ S + LT RE E L +S+G Sbjct: 139 IRTVASGEAVVSPRITQR-MLEMFAASLPSSDAPEQSSCDPRIESLTPREKEILVLMSQG 197 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ EIA L +S TV ++ +++ K + R A+ A + Sbjct: 198 MSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 242 >gi|227545988|ref|ZP_03976037.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213622|gb|EEI81471.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517050|emb|CBK70666.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] Length = 296 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N + Sbjct: 236 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 295 Query: 246 V 246 V Sbjct: 296 V 296 >gi|86748375|ref|YP_484871.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571403|gb|ABD05960.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 309 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +F LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 240 EFTTEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 260 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ Y + + D LT RE E L ++EG +S EIA IL IS TV + A Sbjct: 178 ALIRNYLDRVRHGEETS---DHILTPREEEVLKLVAEGHSSKEIAEILFISIKTVQRHRA 234 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++++K + R YA+R ++ Sbjct: 235 NLLQKLGLRDRLELTRYAIRAGLI 258 >gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 262 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 7/133 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H T S V ++ G + PK L R+ Q + Sbjct: 135 VMHAFELGATGYLLKHAWLQSFAEAVLQVVNGGAAITPKLTRRLLTRM-------NLQGS 187 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + ++ LT RE E L +++ G S EI+V LGIS TVN +I +I +K Sbjct: 188 GERPPTETPLREATLTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVH 247 Query: 232 TRSGAIAYAVRNN 244 +R+ A++ A Sbjct: 248 SRAQAVSLATHTG 260 >gi|219848672|ref|YP_002463105.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542931|gb|ACL24669.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 1/142 (0%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 RP + F + A Y D + + + G +I ++ Sbjct: 75 PRPAVIMLTTFPDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVAGGGALIHPQITAQL 134 Query: 163 -GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 L+ LT RE + L +++G T+ EI L +S TV N++ Sbjct: 135 LPRLSQLATPTTSLPTPSAEPSIALTPRERDILRLLAQGYTNQEIGEALALSIGTVKNHL 194 Query: 222 ASIMRKTATKTRSGAIAYAVRN 243 + I K A + R+ A +A + Sbjct: 195 SVIFAKLAVRDRTQAALWAREH 216 >gi|327390805|gb|EGE89145.1| bacterial regulatory s, luxR family protein [Streptococcus pneumoniae GA04375] Length = 72 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ELT RE + L I++G + IA L IS TV ++++I+ K R+ A YA + Sbjct: 4 HEELTARERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQ 63 Query: 243 NNIV 246 +++V Sbjct: 64 HHLV 67 >gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis AMD] gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis AMD] Length = 260 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N Sbjct: 197 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENG 256 Query: 245 IV 246 +V Sbjct: 257 LV 258 >gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 220 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 15/204 (7%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 AL Y+ F + E + P ++ + + + D Y + P Sbjct: 17 ALQAYLEDEGFGVTTARNAIEGL--ELAEKHQPDLVITDIMMPQVDGYRFLQKLRALPRF 74 Query: 108 LFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + PV + I + Y D + + L + R + + + + Sbjct: 75 RYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNLLDRSRQVQSEIVSLV 134 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L N + D +LT RE E L + G + EIA L S V Y++ Sbjct: 135 SEL-----NHRPAPVAIEAIDLDLTPREQEVLLLVYAGLMNKEIAGRLERSTRNVEKYVS 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ KT T +R+ + +A+ + +V Sbjct: 190 RLLAKTGTSSRTELVRFALEHGLV 213 >gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 237 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 166 AAYQANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 A +A D H LT RE E L ++ G ++ EI LGIS NTV N++ Sbjct: 154 TAEKAITPPQPDKHAANRRTAATPLTDREKEILERVAYGDSNKEIGAKLGISENTVKNHL 213 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 +I++K R YA I Sbjct: 214 KNILQKLHLDNRVQLARYAHEQGI 237 >gi|256370998|ref|YP_003108822.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256007582|gb|ACU53149.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 216 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 10/173 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRY 130 ++ S P +V L+ + LQR VF++ ++ + R Sbjct: 43 EVLESVHPDLIVTDARLTNDSGFEILEDLQRRGVAVPVVFYSAYDDEAYLFRALRAGARG 102 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGR 189 L +G++ G ++ L + LLAA + + G LT R Sbjct: 103 YLLKQASGEELVGMLERAAGGETMIDAALAGRVALLAA----RLQFGEFWPGAHLGLTQR 158 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 E E L + +G ++ +IA L + TV +++SI RK K R+ AIA A+R Sbjct: 159 ESEILDLVVKGLSNRDIAQRLFLGEETVKTHLSSIYRKLKVKGRAEAIAVALR 211 >gi|227543314|ref|ZP_03973363.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227180927|gb|EEI61899.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 212 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ AN + G LT RE+E L ++ G ++ EI +L +S TV +++ I Sbjct: 133 LSPVVANRLMTR--VRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHI 190 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K ++R+ A+A A ++ Sbjct: 191 YDKLDARSRTAAVAAAREQGVL 212 >gi|302561047|ref|ZP_07313389.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478665|gb|EFL41758.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 227 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 L +E++ D +V D +A + L + F + Sbjct: 43 LAREERAD-VVLMDIRMPGTDGLAATRMISADPELAGVRVVILTTFEVDDYVVQSLRAGA 101 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKD 183 + + + + + + ++ + GL+A + A S + Sbjct: 102 SGFLGKGSEPGEMLNAIRIAAGGEALLSP--VATKGLIARFLAQEGTSEADRDPARAERL 159 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + Sbjct: 160 DSLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYES 219 Query: 244 NIV 246 +V Sbjct: 220 GLV 222 >gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 214 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 N Y D + + + + G I I +A Q + + Sbjct: 93 RAGANGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRI--IAELQPSQPTEAHKEMPPE 150 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE++ L +++G T+ EIA L +SR TV ++ +I RK A +R+ A++ A Sbjct: 151 ALLSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARAR 210 Query: 244 NIV 246 ++ Sbjct: 211 GLL 213 >gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] Length = 245 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 10/120 (8%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 D+ Y + ++ + +I ++L+ +++ L+ A +S +D Sbjct: 132 DSIYFDESIEINKEKIQMLLILTHEKML---GLYHNS------AEKNESGTNKIERDI-F 181 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE E L W S GKT EI++ILGI R+TV +I +++RK AI + ++ Sbjct: 182 SPRENEILYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|254412403|ref|ZP_05026177.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180713|gb|EDX75703.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 271 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 27/181 (14%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIG 143 DL R S D + + H + + + YC ++ ++ Sbjct: 98 DLTRKFKSSHTDTQEPETR----VLILTMHDSEDAVLAAFAAGADSYCMKDIEIEQLVEA 153 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD------------------FE 185 L + I I + Q S ++ +D + Sbjct: 154 LEVTQEGNAWIDPA----IASIVLRQVKRDPSSEMAANQDRTVKIDGVGPEYEQVIEAYP 209 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I G ++ IA L I+ TV ++ +I+ K R+ A +A+R+ + Sbjct: 210 LTERELEVLELIVAGASNAAIAEKLYITVGTVKTHVRNILNKLCVDDRTQAAVHALRSGL 269 Query: 246 V 246 + Sbjct: 270 I 270 >gi|119509629|ref|ZP_01628775.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119465648|gb|EAW46539.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 238 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L I EG ++ +IA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 175 YTLTERELEVLQLIVEGCSNADIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRS 234 Query: 244 NIV 246 +V Sbjct: 235 GLV 237 >gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13] Length = 214 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A+ N F+S D LT RE+E L + +G T+ EI+ L I TV ++++I Sbjct: 131 VASKMMNRFRSPSKLPHDD--LTDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K R+ A YA R+ ++ Sbjct: 189 LGKLQVADRTQAAIYANRHGVL 210 >gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 8/177 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAGMDNR 129 +VS P ++ + + D +++ F + E + R Sbjct: 44 HLVSELVPDVVLMDLRMPAMDG-LEAIEQIRATFPHIAIIVLTTYDEDELMLRSLQAGVR 102 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 L + + +G ++L+ L + +L + + +LT R Sbjct: 103 GYLLKDSGLETVLQAIERAARGEMLLQPELMQR-VLDYAARRAAPASPPPGNSNVQLTER 161 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L I+ G+ S EI LGI+R TV +Y+ SI K +R+ A+A A+ ++ Sbjct: 162 EQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIERGLL 218 >gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P + RL A + A Sbjct: 92 VYQALRAGASGFLLKDASAHQLGEAVRVVAAGEALLAPT----VTKRLIATFSQAGWTAL 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + ELT RE E L +++G+++ EIA L ++ +TV +++ I+ K + Sbjct: 148 AGAARPGQQARLDELTERENEVLVLVAQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLR 207 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 208 DRTQAAVFAYEARLV 222 >gi|239926785|ref|ZP_04683738.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435114|ref|ZP_06574504.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338009|gb|EFE64965.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 V RP L F + + A + + ++ ++ Sbjct: 77 VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L+A + + LT RE E LT ++ G+++ EIA L ++ TV + Sbjct: 137 R--LIADFARQRPAVRGKPALRLKALTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 ++ I+ K + R+ A+ +A + +V Sbjct: 195 VSRILTKLDLRDRAQAVVFAYESQLV 220 >gi|229490673|ref|ZP_04384511.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229322493|gb|EEN88276.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 227 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 44/95 (46%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R I E + + + +S + LT RE+E L ++ G ++ +I L Sbjct: 133 RAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELEVLRLLANGLSNIKIGERLF 192 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++++IMRK R+ A+ A + ++ Sbjct: 193 ISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 227 >gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 92 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 43/72 (59%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R Sbjct: 3 SVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62 Query: 235 GAIAYAVRNNIV 246 + +++ N + Sbjct: 63 ALLNWSMDNGKI 74 >gi|239928247|ref|ZP_04685200.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291436576|ref|ZP_06575966.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|302557677|ref|ZP_07310019.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|89274975|gb|ABD65938.1| two-component response regulator [Streptomyces fungicidicus] gi|291339471|gb|EFE66427.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|302475295|gb|EFL38388.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 H G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK Sbjct: 143 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 202 Query: 230 TKTRSGAIAYAVRNNIV 246 T R+G +A A+R I+ Sbjct: 203 TGDRAGMVAVALRTGII 219 >gi|326331825|ref|ZP_08198112.1| putative LuxR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325950322|gb|EGD42375.1| putative LuxR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 972 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 40/89 (44%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL LL G +LT RE E L ++ G+++ EI L IS TV Sbjct: 883 RLGAQPLLDHLLTLGTTPQRSAAGPSGQLTARESEILALVAAGRSNGEIGKQLFISTKTV 942 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++++I+ K R+ A A R +V Sbjct: 943 SVHVSNILAKLGASGRTEAAAIGRRRGLV 971 >gi|295839399|ref|ZP_06826332.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827445|gb|EDY46841.2| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 226 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ L E LAA Sbjct: 92 HQDVLEAVKSGATGYLLKSASTEELIDAVRRTALGEAVFTPGLAGLV---LGEYRRLAA- 147 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + K+ G LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 148 -ESAPKAAGARPGTP-RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 205 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 206 QLHNRVELVRYAIEQGL 222 >gi|29831224|ref|NP_825858.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608339|dbj|BAC72393.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 5/144 (3%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + + + ++ L Sbjct: 77 PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTAIRSVHSGDAVVAPSTTRR--L 134 Query: 165 LAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L + A M S + + + LT RE E + +++G ++ EIA L +S TV ++ Sbjct: 135 LDRF-APMLPSAGKEPQFKELERLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVG 193 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R + A +V Sbjct: 194 RILTKLGLRDRVQVVVLAYETGLV 217 >gi|227489040|ref|ZP_03919356.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227090985|gb|EEI26297.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 212 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ AN + G LT RE+E L ++ G ++ EI +L +S TV +++ I Sbjct: 133 LSPVVANRLMTR--VRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHI 190 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K ++R+ A+A A ++ Sbjct: 191 YDKLDARSRTAAVAAAREQGVL 212 >gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 216 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 13/142 (9%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L + T + + + Y + G+ ++ ++ + + Sbjct: 87 PQVLILTNYSTDSDVLGAISAGAVGYLLKDCAPDELAEGIRQAARGQTVMNKNIMGK--- 143 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L AN F+S LT RE E L S+GK++ IA L ++ TV +++A + Sbjct: 144 LRGRLANPFES----------LTNREQEVLVLASQGKSNRAIAKDLVLTEATVKSHMAHV 193 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K K R+ A+A A I+ Sbjct: 194 FSKLNVKNRTAAVAVARERGII 215 >gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato Max13] gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato K40] gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 247 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 +K I+ S++P ++ S +++ P F N D+ Sbjct: 52 RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111 Query: 131 ----------CSLTFDVARIRIGLMLL-----FPKGRIILRDRLWEIGL-LAAYQANMFK 174 + T A + L +RD+ +I + L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKTADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H + +L+ RE + L W++ GK EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPPTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A++ +V Sbjct: 232 RTAKQAVYKAIKMGMV 247 >gi|21221817|ref|NP_627596.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256787004|ref|ZP_05525435.1| two component system response regulator [Streptomyces lividans TK24] gi|289770897|ref|ZP_06530275.1| two component system response regulator [Streptomyces lividans TK24] gi|4585835|emb|CAB40929.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289701096|gb|EFD68525.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 3/143 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + + + ++ L Sbjct: 77 PKVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLAAIRSVHSGDAVVAPSTTRR--L 134 Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L + + + K+ + LT RE E + +++G ++ EIA L +S TV ++ Sbjct: 135 LDRFAPMLPATGQEPRQKELQRLTEREREVMVLVAQGMSNGEIAARLVLSEATVKTHVGR 194 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R + A +V Sbjct: 195 ILTKLGLRDRVQVVVLAYETGLV 217 >gi|310657820|ref|YP_003935541.1| two-component response regulator yhcz [Clostridium sticklandii DSM 519] gi|308824598|emb|CBH20636.1| Two-component response regulator yhcZ [Clostridium sticklandii] Length = 213 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 11/134 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D + + R+ G M+ FPK ++ + + + Sbjct: 90 VLKCLNLGADGYLSKDVGCEGIIDAILRVYDGEMVTFPKVSDLIIEDM-----------D 138 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + K +LT RE++ ++ IS+G ++ IA L IS TV N+++SI+RK + Sbjct: 139 YVRKQIEENTKSQKLTKRELQVMSLISKGMSNKAIAKHLEISDKTVKNHVSSILRKLSLN 198 Query: 232 TRSGAIAYAVRNNI 245 R+ Y + NNI Sbjct: 199 DRTQIAVYTLSNNI 212 >gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 242 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 3/143 (2%) Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 + RP + + + R L + + G ++ R Sbjct: 99 VDRPLAVVVITTFDHDDYVVSALKAGARGFLLKDAGPELLAQAIRAAASGDALIAPR-VT 157 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL+++ A+ + G+ LT RE E L ++ G+T+ EIA L IS +TV ++ Sbjct: 158 ARLLSSFVASRPQLPRAQPGE--ALTAREEEVLLIVARGRTNAEIADELHISLSTVKAHV 215 Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244 AS+M K + R +A Sbjct: 216 ASLMTKLGARNRVEIAIWAYETG 238 >gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 261 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 24/191 (12%) Query: 63 LVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-P 117 + R+ L +D I+ S PFD R + ++E + + H + Sbjct: 80 VSRYLLNDYINVDPIIREGFSRQLPFDW-REIDITETAQ--------EFMVDAELHGIGT 130 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 ++ P +R L+ + + L+ R L + L E+G L + ++ Sbjct: 131 NGVSVPIVDKSRRSLLSINSQKSDEEWTLI---ERQFLPEWL-ELGFL----LHRKAVFE 182 Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 +H D L RE+ECL W S GK S +I ILG+S +T Y+ S K T S Sbjct: 183 LHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSA 242 Query: 236 AIAYAVRNNIV 246 AIA+AV N++ Sbjct: 243 AIAHAVHLNLI 253 >gi|329938142|ref|ZP_08287593.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302631|gb|EGG46521.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 246 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + + L Sbjct: 111 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGSDLVASIFRVQEGDAVFSP-------RL 163 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 164 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSA 223 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 224 VLRKLQLSNRHELTRWATARRLV 246 >gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G T+ EIA L IS TV ++ + K K R+ A+A I Sbjct: 156 LSAREREVLVLVARGTTNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGI 215 Query: 246 V 246 + Sbjct: 216 L 216 >gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 245 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 19/235 (8%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS---IVSSDWPFDL 86 ++L + + ++ VG H LL + D + + +P + Sbjct: 11 REVLQAIHRTATPENVRDQLLRTLAGVGVEHVLLATLRICDAVPCDRRPTVFAGTYPDEW 70 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 R + + V++ E + P P R + + Sbjct: 71 ARRYYARDYILHDPVVRGVGERGSGFAWSDPGLCAPDDRAARRVLDEAGEFGLREGFTLP 130 Query: 147 LFPKG---------------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 L +R L +G A Q + + + L+ RE Sbjct: 131 LLTLEGDTAGVSFVGEKLDLSPAVRGMLTLVGTYALGQVLLLAKGETGPLAE-PLSPRER 189 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W ++GK+ EIA +GIS + ++ ++ RK T +R+ A+A +R I+ Sbjct: 190 ESLQWAADGKSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 244 >gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51] gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 212 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 8/160 (5%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 ++ M K + T++ H E I P + L A + + Sbjct: 59 MKGMDGLTATKDVLAVSPKTKVILLTQHENKEYILPALKIGAAGYVLKRAAADEVVNAIR 118 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 +GR L + +I + A Q N LT RE E L +++G T++EI Sbjct: 119 ATYQGRSFLDPEIADIVVNAYRQGN--------EDAYETLTEREREILILLAKGHTNNEI 170 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A IL IS TV+ + +++M+K + ++ YA++ ++ Sbjct: 171 APILNISSKTVDYHRSNLMKKLSLHSKVELTKYALKRGLI 210 >gi|21223170|ref|NP_628949.1| two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] gi|8218193|emb|CAB92655.1| putative two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] Length = 251 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%) Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 +RP L V + I G Y + T + + + + Sbjct: 112 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP----- 166 Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D + LT RE E L I+ G EIA L IS TV + Sbjct: 167 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVES 224 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 225 HVSAVLRKLQLSNRHELTRWATARRLV 251 >gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 217 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 4/140 (2%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 ++ H E + C L + + G L L+ Sbjct: 78 QILILTMHDDEEYLFRAIQAGASGCILKSAPHDELLAAIRSVASGNAYLHPS-ATKRLME 136 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 Y ++ + + L+ RE E LT I++G ++ +IA L IS TV + ++M Sbjct: 137 EYIGSVKQGNTDTFNL---LSDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLME 193 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K KTR +AYA++ ++ Sbjct: 194 KLQMKTRPELVAYALKKGLL 213 >gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 224 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLA---AYQANMFKSYDVHWGKDFELTGREVE 192 +R+ I + L G + L L + ++ A QA + LT R+ E Sbjct: 110 SSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTASRLTPRQGE 169 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L + +GK++ EIA +L +S TV ++ +I++ R+GA+ A R + Sbjct: 170 VLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGL 222 >gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L+ A+ + L+ RE+E L ++ G T+ E A L IS TV ++ Sbjct: 124 AVLSPAVASRIMG-QMRAPAQEPLSQREIEVLNLVARGSTNKEAAKKLFISEATVKTHLL 182 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 K K R+ A+A A ++ Sbjct: 183 HAYAKLGVKDRAAAVAVAFERGLL 206 >gi|157150612|ref|YP_001449919.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075406|gb|ABV10089.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 214 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ Sbjct: 142 HIELHDDLTARERDILGLLAKGYENQRIADELYISLKTVKTHVSNILSKLEVSDRTQAVV 201 Query: 239 YAVRNNIV 246 YA ++++V Sbjct: 202 YAFQHHLV 209 >gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 211 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 15/208 (7%) Query: 54 EYVGASHFLLVRWDLF--QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT----- 106 + GA F +F Q + +V+ + D + ++ + + Sbjct: 2 DRFGADKFSYHFTPVFGSQVSRETQVVARGFSMDWLDLYDSADFRQCDPIPDEVMRAGHT 61 Query: 107 ---ELFCPVFHTLPE-----NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 E PE G+ N + + FP ++ Sbjct: 62 ISWEEALDRAEHTPEVERFIAALREYGIANGFGVPLYGPDNRDAYAAFGFPAEVTPTEEQ 121 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + + ++A + + L+ RE+E L I+ GK+ IA +L IS +TV Sbjct: 122 IVALTMVARTAHDRVCQLVTIEEGEISLSQRELEVLRLIAHGKSKPVIAQLLEISADTVG 181 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y+ + K R GA A++ ++ Sbjct: 182 TYVKRLYAKLGVSDRVGATVKALKLKLI 209 >gi|121608696|ref|YP_996503.1| response regulator receiver protein [Verminephrobacter eiseniae EF01-2] gi|121553336|gb|ABM57485.1| two component transcriptional regulator, LuxR family [Verminephrobacter eiseniae EF01-2] Length = 361 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE E L W+ +GK + +I ILG S TV ++ + K +TR+ A A A+ Sbjct: 292 FKLTAREAEVLYWVVQGKINRDIGAILGASPATVKKHLERVFAKLGVETRTAAAAMALNR 351 >gi|258652794|ref|YP_003201950.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556019|gb|ACV78961.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 562 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 6/144 (4%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 RP + P L + + ++ Y C+ T V + + R+ + + Sbjct: 415 RPADAVAP----LRDAVARWRELEAPYDCARTRTVLAEALAALGDNSSARLERQAAERTL 470 Query: 163 GLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +L A LT RE E L ++ G T+ ++A L IS TV ++ Sbjct: 471 TVLGAVVDLRRLAGGPGTTASPGGLTARETEILALVARGDTNRQVAQALVISEKTVARHL 530 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 A++ RK TR+ A+A+A RN + Sbjct: 531 ANVHRKLGVSTRTAAVAWARRNGL 554 >gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 205 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + L+ RE+E L ++ G+++ EI L +S TV +++ I K K+R+ A+A Sbjct: 139 RKPETSLSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVAR 198 Query: 240 AVRNNIV 246 A + Sbjct: 199 ARELGSI 205 >gi|156744138|ref|YP_001434267.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156235466|gb|ABU60249.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 3/143 (2%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEIGL 164 E+ + L E + R + ++ R + + +G + L +L Sbjct: 166 EMELHIVGALLEQAAGNSSNAIRMLARALEIGRAGGYVRVFLDEGEEMRTLLAQLRRDDF 225 Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A+ A K + E LT RE++ L ++EG ++ EIA L +S TV ++ Sbjct: 226 AASLLAAFGKPAHIDQSALIEPLTEREMDVLKLVAEGLSNPEIAEKLYLSVGTVKTHVKH 285 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K R A A ++ Sbjct: 286 IYGKLGVDDRVTAAGKARELGLI 308 >gi|328883924|emb|CCA57163.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 12/181 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129 +V P ++ + + D + R L F + Sbjct: 41 RLVDRHHPDVVLMDIRMPGLDGIEATRRIITTGARTRVLIVTTFDLDEYAYDGLRAGASG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185 + + G+ + ++ LL AY ++ +S + Sbjct: 101 FLVKDAQPEELLAGIRAVASGDAVVAPSLTRR--LLDAYIHHLPQSPTADPDPEDPRLAT 158 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I +G T+ EIA L ++ +TV ++ I+ KT + R A+ A + Sbjct: 159 LTEREREILTVIGQGWTNTEIAERLHLAESTVKTHVGRILAKTGARDRVQAVILAYDTQL 218 Query: 246 V 246 V Sbjct: 219 V 219 >gi|291300805|ref|YP_003512083.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570025|gb|ADD42990.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 19/205 (9%) Query: 55 YVGASHFLLVRWDLF------QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 G +H L D+ Q +D+ V P ++ + + + D +L++ L Sbjct: 14 RTGFTHILNAPDDITVVAAVPGGQAVDATVQHR-PDVVLLDIRMPDVDG-LTILRQLRGL 71 Query: 109 FCP-------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 P F T + D + + L G ++ Sbjct: 72 TRPPVVAMLTTFDTDEYVAAALRLGAAGFLLKDTDPEHLAHQVRALMSDGAVLSAKVTR- 130 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 ++ Y + H + LT RE E L I+EG ++ +IA + +S TV +++ Sbjct: 131 -SVVDGYLQGENR--GQHTTRVSRLTRREREVLVLIAEGMSNSDIAARMFLSVGTVKDHV 187 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++I+ K R A A R I+ Sbjct: 188 SAILTKLGINNRVQAALLAERAGIL 212 >gi|254392026|ref|ZP_05007217.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294814548|ref|ZP_06773191.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442938|ref|ZP_08217672.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705704|gb|EDY51516.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327147|gb|EFG08790.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 233 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 98 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP-------RL 150 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 151 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 210 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 211 VLRKLQLSNRHELTRWATARRLV 233 >gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 224 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 9/172 (5%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLT 134 P +V + + + + + P F+ + + Sbjct: 48 HPDVIVMDIRMPGLNGIDATREITRQTDLPTKILVLTTFNLDEYVYEALRAGASGFLLKN 107 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + ++ ++ + L+A + + + ELT RE E L Sbjct: 108 ASGVELAEAVRIVAAGEALLSPEITKR--LIAEFSRLSTSTKRPTQVRIDELTHRETEVL 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G ++ EIA L ++ TV ++ I++K + R+ A +A +V Sbjct: 166 ALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETGLV 217 >gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D+ L V +G L P L ++ E + + +A Sbjct: 90 VHEALRAGARAYVLKDSTSEELVRAVREAMLGHRYLSP----PLSEKAIEAYMEKSAEAT 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 Y+ LT RE E L +S+G T EIA L IS TV + A++MRK + Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198 Query: 232 TRSGAIAYAVRNNIV 246 ++ + YA++ I+ Sbjct: 199 NQTQLLRYALQRGII 213 >gi|302526791|ref|ZP_07279133.1| predicted protein [Streptomyces sp. AA4] gi|302435686|gb|EFL07502.1| predicted protein [Streptomyces sp. AA4] Length = 71 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D +L RE+ L ++EG ++ EIA LG S +TV N + +M + + R+ A Sbjct: 2 DGEAAYRPQLGERELRVLRLVAEGYSNSEIAAELGWSEHTVKNALYDLMARLGVRNRAHA 61 Query: 237 IAYAVRNNIV 246 AYAVRN ++ Sbjct: 62 AAYAVRNGLI 71 >gi|327404862|ref|YP_004345700.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320370|gb|AEA44862.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 218 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 77/204 (37%), Gaps = 11/204 (5%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSS--DWPFDLVRCMALSEKDKYYNVLQ--- 103 + LTE + A + V + Q I+ + P + + + D V Q Sbjct: 16 VQILTEKLEAKSGVKVALTAYNGQAFLHILPTLTTLPEIIFMDIDMPVLDGIEAVKQAKA 75 Query: 104 ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 + + VF + + Y +A + + + + G L + Sbjct: 76 LYPQIHFIMITVFDDEERIFSAIQAGASGYLLKDESIANLHLAIDNVLNFGAAPLAPMIA 135 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + + N K ++ ++ L+ RE++ L +++GK+ IA L IS +TV + Sbjct: 136 KKAY--NFIQNQNKESNIQE-ENSPLSSREMDILNCLAQGKSYTIIADELFISPHTVRKH 192 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 + +I K ++ A+ A++ Sbjct: 193 MTNIYEKLHVNSKVEAVRLAMQKK 216 >gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium] Length = 223 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L+A + Sbjct: 93 VYEALRAGASGFLLKDASAAELAQAVRVVAAGDALLAPNITK---------RLIAEFSRV 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G+ ELT RE E L+ I++G ++ EIA L ++ T +++ I+ K + Sbjct: 144 TVAPRAPVKGRIGELTERETEVLSLIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 204 DRTQAAVFAYETGLV 218 >gi|182437898|ref|YP_001825617.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778534|ref|ZP_08237799.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466414|dbj|BAG20934.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658867|gb|EGE43713.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 11/166 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + D + + P F + + + A + Sbjct: 57 DVRMPRLDGVEATRRICAQQDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLA 116 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEG 200 + + ++ L + M S D +LT RE E + +++G Sbjct: 117 AIRSVHSGDAVVAPSTTRR---LLDRFSPMLPSGDKEPKNKHVGKLTEREREVMLLVAQG 173 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 174 LSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 219 >gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 229 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 3/172 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D +A + L L F T + + Sbjct: 46 DIVLMDIRMPGTDGLAATSVLCADPDLSATRVLILTTFETEEYVARALHAGASGFLGKDV 105 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194 + GL + ++ L+A + + + K ELT RE E + Sbjct: 106 TTDTLLAGLRTVASGEALLSPAATR--TLIANFLMSPSPGAQLASPKRLSELTARERETM 163 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EG ++ EIA L +S TV +I M K + R+ + A + +V Sbjct: 164 AMAAEGMSNSEIAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQTGLV 215 >gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 204 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G T+ EIA L IS+ TV ++ I K R+ A+A A + Sbjct: 143 LSARELEILQAVATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQL 202 Query: 246 V 246 + Sbjct: 203 I 203 >gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 10/136 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG-RIILRDRLWEIGLLAAYQA 170 V L + G D +L + + G LL P R ++ L GL Sbjct: 93 VAQALRSGASGFLGKDVTADALLAGIRTVAAGDSLLSPGATRTLITRFLAAPGL-----G 147 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + D G LTGRE E + W++EG ++++IA L +S TV ++ M K Sbjct: 148 TRLAAADDLTG----LTGREREVMAWVAEGHSNEKIAEKLFVSPLTVRTHVHRAMTKLGA 203 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ + A ++ +V Sbjct: 204 RDRAQLVVMAYQSGLV 219 >gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 235 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 13/175 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGM---DNRY 130 +V P L+ + + D + V T ++ A + + Sbjct: 66 LVDRHRPDVLLTDLRMPGCDGVEATRRVRAAHPGTAVVVLTTYVDDDAIVAALRAGAAGW 125 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 S D I L I L L+AA Q LT RE Sbjct: 126 LSKDADADAIGRALHSAADGQGTIDAGALAR--LVAASQ-----PAPAGGEPPDGLTPRE 178 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 VE L I++G ++ EIA L + T+ ++ + K + R+ A+ YA R+ + Sbjct: 179 VEVLALIAQGLSNREIARRLVVGEATIKTHVNHLFAKAGLRDRAQAVNYAYRHGL 233 >gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 216 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 5/155 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 +S ++ P L F + + + + L Sbjct: 65 GISATEQIVAAGGAPKVLILTTFDDDAHLFAALQAGASGFLLKNCPPDDLVQAIRLAAEG 124 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ + + +A + D G+ ELT RE + L ++ G ++ EIA L Sbjct: 125 HSLLAPEVTQRV--IARSTSRAAPEAD---GRLDELTERERDVLVLLARGHSNAEIAGEL 179 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S TV ++++ I+ K + R A+ A N + Sbjct: 180 YVSAATVKSHVSHILAKLEVRDRVQAVILAFENGL 214 >gi|238064526|ref|ZP_04609235.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237886337|gb|EEP75165.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 10/171 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P ++ + + D + + PV F + + + + Sbjct: 58 PDVVLMDIRMPRMDG-VAATRAIVDARLPVRVLILTTFDLDEYVVGALRAGASGFLAKDV 116 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L LL + + LT RE E L Sbjct: 117 PAEDLITAIRTVAAGDAVVAPRILKR--LLDRFADALPDPAATPPKALNALTEREREVLV 174 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L +S TV ++ ++ K + R A+ +A + +V Sbjct: 175 QVARGLSNAEIARELTVSETTVKTHVGHVLTKLGLRDRVQAVVFAYESGLV 225 >gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 205 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + L+ RE+E L ++ G+++ EI L +S TV +++ I K K+R+ A+A Sbjct: 139 RKPETSLSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVAR 198 Query: 240 AVRNNIV 246 A + Sbjct: 199 ARELGSI 205 >gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 556 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------- 184 ++F V G+M + K ++ + L + K K Sbjct: 427 ISFSVHEHVHGVMAVHLKDIEAAKEAEVYVAALIGIGTMVMKQNTYQTPKQELNIDMLSE 486 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L + +G ++ EIA L IS +TV N+I +I +K RS IA + N Sbjct: 487 RLTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 546 >gi|91786468|ref|YP_547420.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91695693|gb|ABE42522.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 297 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 33/51 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE E L+W+++GKT+ +I ILG+S TVN ++ I K +TR Sbjct: 235 NAALTPRETEVLSWLAKGKTNKDIGDILGMSHRTVNKHLEHIFEKLGVETR 285 >gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 17/137 (12%) Query: 112 VFHTLPENITPPAGMD--NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 VF L L VA +R G L P I L ++G + Sbjct: 90 VFGALAAGADGYCLKATAGIASRLLAAVASVRDGAAWLDPD---IADRVLRDLGRI---- 142 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 G D L+ RE+E L I++G T+ EI L I+ TV ++++I+ K Sbjct: 143 --------PQAGADNPLSEREMEVLKLIADGLTNAEIGRRLYIASGTVRVHVSNIIAKLG 194 Query: 230 TKTRSGAIAYAVRNNIV 246 R A A+R + Sbjct: 195 VNDRVQAAVRALREGWI 211 >gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato Max13] gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato K40] gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 149 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 ++ ++ L + + + +L+ REVE L W+++GKT + I +LG++ TV Sbjct: 61 KMSKLVRLTHACLSEIITLSPPYNPLEKLSTREVEVLKWVADGKTGEVIGKVLGVTERTV 120 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +IM+K ++ A A I+ Sbjct: 121 THHTVNIMQKLNATNKTAAAVKAALLGII 149 >gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 221 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 16/222 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R+ +D + + A F +V ++ ++ + + P ++ + + Sbjct: 1 MIRVALVDDQAIVRAGLARILS--PADGFDVVAECADGQEAVERL-PALRPDVVLMDVRM 57 Query: 93 SEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 D R + P F + + + Sbjct: 58 PRLDG-IAATARLRDADDPAAVLVLTTFGEDDVLWGAIEAGAAGFVLKDSSAEELIAAVR 116 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSD 204 + G + + G EL T RE + L ++ G T+ Sbjct: 117 AVAGGGAWFDPGVAPRV----LDHYRRLVAPAAREGTRLELLTEREHDVLRLMARGATNA 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ TV ++ SI K + R+ AI YA + ++ Sbjct: 173 EIAATLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGVI 214 >gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] Length = 241 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 17/184 (9%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----FHTLP-------ENITPPAGM 126 S +P L + + V+ + P F + + G+ Sbjct: 52 LSSYPIRLQQEYRRRALHRVDPVVLHAIQSVAPFSWAEAFRQQRVPDPSEFDALRREFGL 111 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWG 181 + Y D + L GR R + + L + + + Sbjct: 112 HDGYVFTVHDPYQYVGMLSFFNRGGRPEFRAEIERVKGAMQLALVLFHSRINAKPPDSRH 171 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE L W + GK+ EIA I GI TV ++A++++K T A+ A Sbjct: 172 RVESLTLRERTVLKWAAMGKSYSEIADICGIRERTVKYHMANVVQKLDVSTAKQAVIVAS 231 Query: 242 RNNI 245 R + Sbjct: 232 RLGL 235 >gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R R +A+ +S + L+ RE E L ++ G + EI Sbjct: 126 LFTAVRAAAEGRTVLSPAVASRLVTAVRSPRTPGSEP--LSAREREVLALVARGTANREI 183 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ + K K R+ A+A A I+ Sbjct: 184 ARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 223 >gi|305679871|ref|ZP_07402681.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660491|gb|EFM49988.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 14/188 (7%) Query: 71 EQKLDSIVSSD--WPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENI 120 + LD+I + P ++ + + E D + L F + Sbjct: 34 DTGLDAIAMAQRLQPDVVLMDIRMPELDGIAATEKICGNPDLAATRVLILTTFENDTNIV 93 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 + + + + + + ++ L+ + + Sbjct: 94 AALRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATR--SLITRMLQPTEADPEPYA 151 Query: 181 GKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE E L +++G ++ EIA L IS +T ++ +IM K R+ + Sbjct: 152 NPELIDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVI 211 Query: 239 YAVRNNIV 246 + +V Sbjct: 212 VGYESGLV 219 >gi|21225370|ref|NP_631149.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783610|ref|ZP_05522041.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767492|ref|ZP_06526870.1| two-component system response regulator [Streptomyces lividans TK24] gi|7688304|emb|CAB89760.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697691|gb|EFD65120.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 74/226 (32%), Gaps = 18/226 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ D L + + + V + Q+ ++ P ++ + Sbjct: 1 MTIRVLLADDQALLRATFRILID---SDPHMTVVAEAADGQEAVALTLEHRPDVVLMDIR 57 Query: 92 LSEKDKYY--------NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + D L L F + + + G Sbjct: 58 MPGTDGLAATAGICARTDLSGTRVLILTTFEDDENVALALRSGASGFLGKDVGPDVLLAG 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEG 200 + + ++ L+ + A+ + DV L T RE E + + G Sbjct: 118 IRTVAAGDSLLSPTATR--ALITRFLAS--PTDDVPLAAPERLALLTEREREVMALAALG 173 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 K++ EIA L +S TV ++++ M K + R+ + A ++ +V Sbjct: 174 KSNQEIADHLVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQSGLV 219 >gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 219 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 13/133 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + L V + G +L P ++A + A Sbjct: 93 VFAALEAGAAGYLLKEASEDELLRAVRAVAAGESVLHPSIAR---------KVMARFSAQ 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D+ +L+ RE+E L + G ++ EIA LGIS TV ++ ++ K Sbjct: 144 APAEMDLTE----DLSPRELEVLRAAARGGSNKEIARALGISPRTVQVHLGNVFSKLNVG 199 Query: 232 TRSGAIAYAVRNN 244 +R+ A+ +R Sbjct: 200 SRTEAVLAGIRRG 212 >gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans] Length = 210 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + ++R L Y H K+ L+ RE + L W+ GKT E+AVIL I Sbjct: 115 MEKNRSKIFSFLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ ++M+K + A+ ++ Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208 >gi|159897633|ref|YP_001543880.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890672|gb|ABX03752.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 8/161 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L+ + E + T++ ++ E I P L + + Sbjct: 59 LMPGIDGVEATRQVRGASPHTQVIVLTSYSEDERIFPAIKAGALSYLLKDVGPDALVAAI 118 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +G L + L+ ++ D LT RE E LT I+ G ++ E Sbjct: 119 RAARRGEATLHP-MVASRLMTELTSSRRSPLDT-------LTEREREVLTCIARGMSNAE 170 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L I TV ++++I+ K + R+ A A+R +V Sbjct: 171 IAEHLVIGERTVKTHVSNILSKLHLQDRTQAAIMALRERLV 211 >gi|271969975|ref|YP_003344171.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513150|gb|ACZ91428.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + + + F + + Sbjct: 49 DVVLMDIRMPELNGLEAARQIIADDGPAVTKVIILTTFDLDDYVYGALRAGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + G+ ++ +I L+A + + + + LT RE E LT Sbjct: 109 EPAELIHGIKVVARGDALIAPSVTRR--LIAEFAGRVKRP--EPGPEFNGLTEREREVLT 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++DEIA L +S T +++ IM K + R+ + A +V Sbjct: 165 LVAGGLSNDEIAARLVLSPATAKTHVSRIMTKLHARDRTQLVVLAYEAGVV 215 >gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 1/135 (0%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V P + + + R L+ P + R G +A A Sbjct: 73 VAAGGPPVLILTTYDTDADILAAIEAG-ARGYLLKEAPTEELAQAIRAAAAGEVALGPAV 131 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE+E L ++ G+++D++A L +SR TV ++A + K Sbjct: 132 QRRLLGRMRSPGLALTRRELEVLELVARGRSNDDVARELFLSRATVKTHLAHVYDKLGVD 191 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+A A + ++ Sbjct: 192 SRTAAVAVARQRGLL 206 >gi|271962774|ref|YP_003336970.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505949|gb|ACZ84227.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 5/141 (3%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + G + RL +L Sbjct: 77 RFLALSVSDAAEDVIGVIRGGARGYVTKTISGRELTDAIRRVA-DGDAVFSPRLAGF-VL 134 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ ++ D LT RE E L I+ G EIA L IS TV +++S++ Sbjct: 135 DAFASSEAPPIDPELD---SLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVL 191 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK R +A +V Sbjct: 192 RKLQLSNRHELSRWATARRLV 212 >gi|182436531|ref|YP_001824250.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777153|ref|ZP_08236418.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465047|dbj|BAG19567.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657486|gb|EGE42332.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 96 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSP-------RL 148 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231 >gi|172040144|ref|YP_001799858.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851448|emb|CAQ04424.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 264 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 40/62 (64%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L I++G+++ EIA L IS TV ++ ++ KT ++ R A+ +A++++ Sbjct: 193 PLTRREREILCLIAKGQSNQEIAEKLFISLPTVKTHVGRVLMKTGSRDRVHAVLFALKHH 252 Query: 245 IV 246 +V Sbjct: 253 LV 254 >gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 237 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 14/199 (7%) Query: 55 YVGASHFLLVRWDLFQEQKL---DSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTE 107 G +++ ++E+ L D +V + PF + + + + + ++ Sbjct: 42 IFGVTNYPDEWVTQYKEKGLQYTDPVVITALNRLTPFSWNEKLLVRSDFNFEKLFIQASQ 101 Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 +T + + + A I L+ ++L L + Sbjct: 102 FGIINGYTFVLHDNQNNLVTLSFIIPAAKGAEIMELLIQHKGDISLLLASVHETYLTLTS 161 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + K + T RE E L W S GKT E +ILGI TV ++++I++K Sbjct: 162 L-------SEKDTDKHSQFTPRENEILHWTSLGKTYQETGMILGIKVRTVKFHMSNIVKK 214 Query: 228 TATKTRSGAIAYAVRNNIV 246 A+ V ++ Sbjct: 215 MGVANARHAVRLGVELQLI 233 >gi|302534040|ref|ZP_07286382.1| two component system response regulator [Streptomyces sp. C] gi|302442935|gb|EFL14751.1| two component system response regulator [Streptomyces sp. C] Length = 237 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 9/193 (4%) Query: 57 GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116 GA + L R ++ +V D +A + L + F Sbjct: 46 GAQAYALAR------ERRADVVLMDIRMPGTDGLAATRMISADPELSDVRVVMLTTFEVD 99 Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---LWEIGLLAAYQANMF 173 + + + + + + ++ L L +A+ Sbjct: 100 EYVAAALRAGASGFLGKGAEPDELLNAIRVAHAGEALLSPAATKGLIASFLAQGGRADAP 159 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + H + LTGRE E L ++ G ++D IA L +S TV ++ M K + R Sbjct: 160 ATGTAHAERLATLTGREREVLVQVAGGLSNDGIAARLEVSPLTVKTHVNRAMAKLGARDR 219 Query: 234 SGAIAYAVRNNIV 246 + + A + +V Sbjct: 220 AQLVVIAYESGLV 232 >gi|163735012|ref|ZP_02142449.1| two-component response regulator, putative [Roseobacter litoralis Och 149] gi|161391794|gb|EDQ16126.1| two-component response regulator, putative [Roseobacter litoralis Och 149] Length = 303 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 174 KSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + D H + E LT RE E L W+S GK + +IA IL +S T+N ++ + +K Sbjct: 226 QKRDAHPYQQLEEVFGLTPREAEVLYWLSLGKPNRDIAQILSLSSRTINKHLEQVFQKMG 285 Query: 230 TKTRSGAIAYAVR 242 R+ A A R Sbjct: 286 VDNRTAAAVAADR 298 >gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae] Length = 246 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 74/206 (35%), Gaps = 18/206 (8%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--- 112 V F L R + V + +P V L++ +++ P Sbjct: 36 VDFVTFHLART--IVDSVDAPFVRTTYPDSWVSRYLLNDYINVDPIIREGFSRQLPFDWR 93 Query: 113 --------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR--IILRDRLWEI 162 + + G + + R + + I R L E Sbjct: 94 EIDIPDSAHQFMVDAEMHGIGGNGVSIPIVDKSRRSLLSINSQMSDEEWTAIERQFLPEW 153 Query: 163 GLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L + + +++H D L REVECL W S GK S +IA ILG+S +T Y Sbjct: 154 TEL-GFLLHRKAVFELHGENDPVPALGTREVECLHWASRGKDSKDIAEILGLSEHTARGY 212 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + S K T S AIA+AV N++ Sbjct: 213 LKSARYKLGCPTLSAAIAHAVHLNLI 238 >gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans] Length = 202 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLM--LLFPKGRIILRDR---LWEIGLLAAYQANM---FKSYDVHWGKD 183 S+ + R + L R +L+D L + GL++ S ++ Sbjct: 78 SVPIHLPRGGFASLTGLRTGNARNVLQDAQQTLSDFGLISHALQEAAYPLFSKELRTYPH 137 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL W ++G T+ EIA L S V ++AS M K K R A+ A Sbjct: 138 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 197 Query: 244 NIV 246 ++ Sbjct: 198 RLL 200 >gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 253 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 10/181 (5%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 +R F LD + +D +L+ M V+ E V H T Sbjct: 81 IRQHEFDVMLLDLKLGADDGLELIEVMKSQRPQAEVIVVSV-VETEEQVLHAFELGATGY 139 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++ + + V ++ G + P L RL L Y G Sbjct: 140 LVKNSWFGNYPQAVLQVVNGGASITPS----LARRL-----LQRYDKRPATGAVPGSGMS 190 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L ++ G TS EI V L IS TVN +I +I RK +TR+ A+ +A Sbjct: 191 DRLSSRECEVLRMVASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFAYLR 250 Query: 244 N 244 Sbjct: 251 G 251 >gi|291303524|ref|YP_003514802.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572744|gb|ADD45709.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 10/144 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + + + + + L Sbjct: 81 KFLALSVSDAAEDVIGLIRAGARGYVTKTIAASELVAAIRRVAEGDAVFSP-------RL 133 Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + + F S D EL T RE E L ++ G EIA L IS TV +++ Sbjct: 134 AGFVLDAFASKSQAPASDPELDQLTNREREVLRLLARGYAYKEIARELYISIKTVETHVS 193 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++RK R +AV IV Sbjct: 194 NVLRKLQMSNRYELSRWAVDRRIV 217 >gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R R +A+ ++ G+ L+ RE E L +++G ++ EI Sbjct: 120 LFTAVRAAADGRTVLSPAVASRLITRVRTPAAPGGE--ALSTREREVLALVAKGTSNREI 177 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A +L IS TV ++ + K K R+ A+A I+ Sbjct: 178 AAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGIL 217 >gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 2/156 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + L F + + ++ + ++ Sbjct: 66 GIEATRRITTERPHIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAG 125 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ L+A + + +LT RE E L+ I++G ++ EIA L Sbjct: 126 DALLAPGVTRR--LIAEFSRLGTAPRAPLKERVGDLTERETEVLSLIAQGLSNAEIAQSL 183 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ TV ++ I+ K + R+ A +A + +V Sbjct: 184 VVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219 >gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + + D + + P F + + + + Sbjct: 55 DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + + ++ LL + + + ++ E LTGRE E + +++G Sbjct: 115 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPGTGKQDGHQELERLTGREREVMVLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|302537766|ref|ZP_07290108.1| two component system DNA binding response regulator [Streptomyces sp. C] gi|302446661|gb|EFL18477.1| two component system DNA binding response regulator [Streptomyces sp. C] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + RP V T + A ++ Sbjct: 54 MDLQFGAGMHGSAATAAITARPGAPRVLVLTTYDTDADILAAVEAGASG----------Y 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P + R G A A + D LT RE+E L +++G ++ Sbjct: 104 LLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADGLSN 163 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +I+ L +S+ TV +++ + K +R+ A+A A ++ Sbjct: 164 QQISKRLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLI 206 >gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 234 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T LT V G + P ++ L E LA+ Sbjct: 102 HADVLEAVKSGATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLV---LGEYRRLASD 158 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + + K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 159 PAPVA----SNEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 214 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 215 QLHNRVELVRYAIERGL 231 >gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 230 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 10/162 (6%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 DL+ + ++ V+ + L + +T + + G Sbjct: 78 DLISQLRAADPGMGILVIS-AWSTEDAILSALRAGANGYVLKERDDLEVTLSIRSVLRGG 136 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + P I R + E+ +A+ + L+ RE++ L +++G T+ Sbjct: 137 APIDP---FIARRIIAELQPAQPTEAHKAMPPEAV------LSTRELQILKLVADGMTNR 187 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +SR TV ++ +I RK A +R+ A++ A ++ Sbjct: 188 EIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 229 >gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V+ D L+ + + V P L F + + Sbjct: 50 DVVAMDVRMPLLDGIEATRALLR-TVDDPPRILVVTTFENDEYVYEALRAGADGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + L+ ++ + ++ A Y + +LT RE E L Sbjct: 109 RPAEIVHAVRLIAEGDSLLFPASVRQLA--AEYGDEGGNRAARAAMERAQLTEREAEVLR 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV +++++++ K + R+ A+ A + V Sbjct: 167 LMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217 >gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+ L IS+G + EIA L +S TV NYI SI +K + R A YA+RNNI Sbjct: 158 LTNRELNILYEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217 >gi|159027236|emb|CAO89331.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 234 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE+E L I G ++ +IA L I+ TV ++ +I+ K + R+ A A+ Sbjct: 169 ENVPLTERELEILALIVGGFSNAQIADRLYITIGTVKTHVRNILNKLSVDDRTQAAVLAL 228 Query: 242 RNNIV 246 R+ +V Sbjct: 229 RSGLV 233 >gi|94500443|ref|ZP_01306975.1| regulatory protein CsgD [Oceanobacter sp. RED65] gi|94427478|gb|EAT12456.1| regulatory protein CsgD [Oceanobacter sp. RED65] Length = 216 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + R ILR LW +L+ + AN + LT RE + L+ + G + + Sbjct: 112 VSKGIRSILRGELWFSRRILSQFMANNRRPPAPEQKPAHNLTRRESQILSLSASGAKNAD 171 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 IA L +S +TV ++ ++ +K R A+ +A Sbjct: 172 IAAALNVSTHTVKTHMYNLFKKLDVSNRIQAVNWA 206 >gi|322688905|ref|YP_004208639.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|320460241|dbj|BAJ70861.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 299 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N + Sbjct: 239 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 298 Query: 246 V 246 V Sbjct: 299 V 299 >gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKT 202 LL R+ + ++ GL + ++ E LT RE E L +++G Sbjct: 114 LLDAVRRVHAGEAVYTPGLAGLVLGEYRRLSSADRSREPEAPELTPRETEVLRLVAKGLA 173 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +IA LGIS TV N++ + + K R + YA+ + Sbjct: 174 YKQIAQRLGISHRTVQNHVQNTLTKLHLHNRVELVRYAIDRGL 216 >gi|319947541|ref|ZP_08021771.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746229|gb|EFV98492.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 211 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 11/123 (8%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 Y T I + + I E+ Y+ N + +D Sbjct: 95 DAGAKGYMLKTSSAEEILRAIHKVEQGELAIET----EVSQKVEYRKNHVELHD------ 144 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE + L +++G + IA L IS TV ++++I+ K R+ A+ YA ++ Sbjct: 145 -DLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQH 203 Query: 244 NIV 246 ++V Sbjct: 204 HLV 206 >gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 203 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 69/195 (35%), Gaps = 13/195 (6%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFC 110 L G S QE+ + +D PFDL+ + D LF Sbjct: 20 LESEGGMSTCAANSLPAAQER-----METDGPFDLILLDYNMPGMDG-------LQGLFD 67 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 + + + +G +R + A + P +I R +G A Sbjct: 68 TMAMNGGQRVALISGQASREVAEQALDAGAAGFVPKTLPAKSMINAVRFMAMGEQYAPID 127 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M D L+ RE+E L +SEGK + EIA L I+ TV ++ S+ RK Sbjct: 128 FMTAVEDTPCPLTSTLSPREIEMLRGLSEGKANKEIARDLNIAEPTVKLHMKSLYRKMKV 187 Query: 231 KTRSGAIAYAVRNNI 245 R+ A A + Sbjct: 188 SNRTQAALVARDKGL 202 >gi|196232652|ref|ZP_03131504.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223414|gb|EDY17932.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 220 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 6/178 (3%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 F E IV D + + + + + R + H + + Sbjct: 47 FAEDLAPDIVILDLSMPELNGLEAARRIAAHCPRSR---MLMLTMHETEQFVREALAAGV 103 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 R L D R + +G RL A + + LT Sbjct: 104 RGYILKTDAGRDLANAVDALIRGETFFASRLAATIYAAEFAGMGRRR---RSKSQAGLTP 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L ++EG+ + ++ L IS T + A IM K + + + YA+RN ++ Sbjct: 161 REREILQLLAEGRKNRDVGKALNISVKTAETHRARIMAKLGIDSVADLVRYAIRNGLI 218 >gi|256785730|ref|ZP_05524161.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289769622|ref|ZP_06529000.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289699821|gb|EFD67250.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] Length = 251 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%) Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 +RP L V + I G Y + T + + + + Sbjct: 112 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSP----- 166 Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D + LT RE E L I+ G EIA L IS TV + Sbjct: 167 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVES 224 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 225 HVSAVLRKLQLSNRHELTRWATARRLV 251 >gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 19/172 (11%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTL--PENITPPAGMDNRYCSLT 134 P ++ + L + E +F T E+I R L Sbjct: 50 KHHPDVVLMDLRLPGANGTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLK 109 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 L R + LA A + DV + RE E L Sbjct: 110 SAARE------ELLSAIRAVAAGERHLSAALAQRLAGRVAAPDV--------SDREREVL 155 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ GK + EIA LGIS TV + +++ K R+ A + +R ++ Sbjct: 156 QLIARGKANKEIAAALGISEETVKRHASNLFVKMGVADRAQATSEGIRRGLI 207 >gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1] gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1] Length = 230 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Query: 162 IGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + L Y H K+ L+ RE + L W+S+GKT EIA+IL I+ TV + Sbjct: 143 MSFLIHLHQKTLNLYSQHQQKKNAFLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFH 202 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 + ++M+K +A++ Sbjct: 203 MGNVMKKLGVNN----ARHAIKLG 222 >gi|296453955|ref|YP_003661098.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183386|gb|ADH00268.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 286 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N + Sbjct: 226 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 285 Query: 246 V 246 V Sbjct: 286 V 286 >gi|256389407|ref|YP_003110971.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355633|gb|ACU69130.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 13/140 (9%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 + V + T D L V G +L P + Sbjct: 95 DTESDVLPAIEAGATGYLLKDAPREDLIRAVRAAAAGQPVLAPT-------------VAQ 141 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + LT RE+E L ++ G T+ E A L IS TV ++ Sbjct: 142 RLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTTNRETARKLFISEATVKTHLLHAYA 201 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K + R+ A+A A + ++ Sbjct: 202 KFGVRDRAAAVAEAYKRGLL 221 >gi|225020347|ref|ZP_03709539.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] gi|224946736|gb|EEG27945.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] Length = 223 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 14/188 (7%) Query: 71 EQKLDSIVSSD--WPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENI 120 + LD+I + P ++ + + E D + L F + Sbjct: 34 DTGLDAIAMAQRLQPDVVLMDIRMPELDGIAATEKICGNPDLAATRVLILTTFENDTNIV 93 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 + + + + + + ++ L+ + + Sbjct: 94 AALRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATR--SLITRMLQPTETDPEPYA 151 Query: 181 GKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE E L +++G ++ EIA L IS +T ++ +IM K R+ + Sbjct: 152 NPELIDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVI 211 Query: 239 YAVRNNIV 246 + +V Sbjct: 212 VGYESGLV 219 >gi|111017172|ref|YP_700144.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816702|gb|ABG91986.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 219 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 3/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + + + + + ++ LLA + + Sbjct: 85 FDLDEHAMGALRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRR--LLAKFLDDG 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE E L ++ G ++ EIA L +S +T+ +++ I+ K + Sbjct: 143 PGPLRDPEVLDV-LTEREREVLQLVATGLSNTEIAGQLFLSESTIKSHVGRILTKLNVRD 201 Query: 233 RSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 202 RVQAVVLAYETGLV 215 >gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 224 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 11/171 (6%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135 P V + + D +R + V FH + + Sbjct: 48 PDVAVMDIRMPHVDG-IEATRRLQQRMPDVRVLVVTTFHLDEYVHEALRAGASGFLLKDT 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ + L+ Y + G+ ELT RE++ Sbjct: 107 APDSLVDAVRTVAAGDALLSPAVTRQ--LIEHYVQRPTPDAGL-TGRLAELTPRELDVAR 163 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G T+ EIA L + TV ++ SI+ K A + R+ + A + +V Sbjct: 164 LVARGMTNAEIAAELFLGEGTVKTHVTSILSKLALRNRTQIVVAAYESGLV 214 >gi|296139697|ref|YP_003646940.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027831|gb|ADG78601.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 7/175 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +V S P L+ + + D T + + E+I R Sbjct: 50 DLVLSLRPAVLLTDLRMPNLDGVGATERVVAAAPATAVILLTTYDDEESILRGLHAGARG 109 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + G+ +L + + L A +LT RE Sbjct: 110 YLTKNAGRAEIAAAISAAAAGQSVLDPAVQQ--RLLASITATPAPAQAAGTPPVDLTPRE 167 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E L I+EG + +IA L +S +TV +I ++ K + R+ A+ YA I Sbjct: 168 TEVLQLIAEGLANRDIAARLFVSESTVKTHINNLFAKAHLRDRAHAVRYAFDTGI 222 >gi|71907077|ref|YP_284664.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71846698|gb|AAZ46194.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 308 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 F LT RE E L W+ +GKTS++I ILG S TVN ++ + K +TR+ A A+ Sbjct: 245 FRLTQREAEVLYWVVQGKTSNDIGDILGNSPRTVNKHLEHVFEKLGVETRTAAANLAM 302 >gi|226305875|ref|YP_002765835.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184992|dbj|BAH33096.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + P + + + + + L Sbjct: 50 DVVLMDVRMPEMNGLDAAR-QILSAGWEPPVRVLMLTTFDIDDYVYEALSVGASGFMLKD 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + + +G+ +L + L A + + LT RE E L Sbjct: 109 APAEELIRAVRVVAEGQALLAPTVTR--RLIADVTSRRAAPRARPAALDALTPREREVLE 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV ++ ++ K + R+ A+ A + +V Sbjct: 167 LIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217 >gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16] gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 235 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---E 185 Y D I + + G I I L A A + +H + Sbjct: 114 GYLLKERDDLEISLSIRSALRGGAPIDPFVARHILDLVATTAPLPGGAQIHARRLVGASP 173 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ + +G T+ EIA +L +SR TV +I +I +K A +R+ A+ A + + Sbjct: 174 LSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHSRTQAVFEARAHGL 233 Query: 246 V 246 + Sbjct: 234 L 234 >gi|325677563|ref|ZP_08157226.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325551634|gb|EGD21333.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 206 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 10/160 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + + E VF T + +D + + Sbjct: 53 MDLALGTGIDGVEAIRRIRAARPEQPVLVFTTYDTDADVVRALDAGAIGYLLKDSAPQD- 111 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 +F R + R +A+ + + D LT RE E L+ ++EG T+ Sbjct: 112 ---IFGAIRDAVAGRSVLSPPVASRVLDRMRRPDQA------LTAREAELLSLLAEGLTN 162 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 E+ L IS TV ++A I K +R+ A++ A+R Sbjct: 163 KELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202 >gi|282866345|ref|ZP_06275390.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558741|gb|EFB64298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 224 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + D + + P F + + + A + Sbjct: 55 DVRMPRLDGVEATRRICAQTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLS 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + + ++ LL + + S K E LT RE E + +++G Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSSGREPQHKHVERLTEREREVMLLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|226305274|ref|YP_002765232.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184389|dbj|BAH32493.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 44/95 (46%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R I E + + + +S + LT RE+E L ++ G ++ +I L Sbjct: 116 RAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELEVLRLLANGLSNIKIGERLF 175 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++++IMRK R+ A+ A + ++ Sbjct: 176 ISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 210 >gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 47/88 (53%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + ++ H D LT RE E L ++EG++S +IA IL IS TV Sbjct: 130 LYPGAVTALIRNYLDRARQGHETPDQILTAREEEVLKLVAEGRSSKDIAEILFISVKTVQ 189 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + A+++RK + R YA+R ++ Sbjct: 190 RHRANLLRKLGLRDRLDLTRYAIRAGLI 217 >gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 224 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + G R L V + G LL P + L+ + + Sbjct: 93 VAQAIRAGASGFIGKGIRAEDLLDAVRTVASGNSLLSP---------IATSALITRFL-S 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D G +LT RE+E +T ++ G ++DEIA L IS T ++ M K + Sbjct: 143 IPSRADSTSGIFGQLTPRELEVVTLVAMGMSNDEIAAELVISAVTAKTHVNRAMTKLDVR 202 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 203 DRAQLVVLAYQCGLV 217 >gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 247 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 52 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 112 RSAQYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 232 RTAKQAVYKAINMGMV 247 >gi|77918586|ref|YP_356401.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544669|gb|ABA88231.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 223 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKD 183 + Y + D+ + L+ F G + L ++ + A + D D Sbjct: 101 AGADGYVLKSIDINELAD-LIRAFSCGEHPMSPYLMDLAVDWHASEQEEESPADKDDESD 159 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L+ +++G+ + EI+ L IS TV +I +I +K K+R A+ A Sbjct: 160 AFLTRREQQILSCLAQGQGNKEISNALFISTETVKTHIKNIFKKLEVKSRLEAVIAAKEK 219 Query: 244 NIV 246 ++ Sbjct: 220 KLI 222 >gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 211 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 21/221 (9%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----DWPFDLVRCMA 91 M+ +D + L E + + D+ E S P ++ + Sbjct: 1 MVVVDDQTLVRQGIRGLLE--------VAQVDVVGEAADGRAALSVIAQTMPDVILLDLR 52 Query: 92 LSEKDK-YYNVLQRPTELFCPVF-HTLPENITPPAGM----DNRYCSLTFDVARIRIGLM 145 + D + + ++ PV T ++ G Y + ++ + Sbjct: 53 MPRFDGIWTIEQLKAADIDIPVLVLTTFDDDALVLGALRAGARGYLLKDVTLEQLTRAIH 112 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L G +I + + L A D + LT RE E L ++ G ++ E Sbjct: 113 TLADGGTLIAPS-ITDRMLRAIRSGPSPAGPDAPTVQ--SLTEREREVLRLVAHGYSNRE 169 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L ++ TV N+++ I+ K + R+ A+ A+ I+ Sbjct: 170 IAGALFLAEGTVKNHVSMILTKLGARDRTNAVLRALHEGIL 210 >gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 229 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 5/144 (3%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + + ++ Sbjct: 83 PRVLILTTFDLDEYAFAALKAGASGFLLKDVPPTELVAAIRSVHGGDAVVAPTTTRR--- 139 Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + A + + G LT RE E +S+G ++ EIA L +S TV ++ Sbjct: 140 MIDRFAEVLPTPASTPGSTVLGPLTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVG 199 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ A N +V Sbjct: 200 RILAKLGLRDRVQAVVLAYENGLV 223 >gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 211 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 L + + A A + G+ LT RE E L +++G ++ EIA L +S T Sbjct: 122 ALLDPAVHARLVALARQQPAAGSGELPAGLTAREAEVLICMAKGLSNREIARSLFVSEAT 181 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245 V ++ + KT ++ R AIAYA R + Sbjct: 182 VKTHVNRVFAKTGSRDRGQAIAYAHRYGL 210 >gi|297538453|ref|YP_003674222.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera sp. 301] gi|297257800|gb|ADI29645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Methylotenera sp. 301] Length = 258 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 35/53 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE+E + WI GKT+ EIA IL IS+NTV +++ + +K R+ A+A Sbjct: 199 LSVRELEIIHWIKSGKTNQEIATILDISQNTVKSHLKRVFQKMNVTRRAQAVA 251 >gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 230 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 G+ +R ++ G++ + + + + R + ++ + A + V Sbjct: 97 GITDRGLTVPVRGPYGECGMLSVTKDCSDTEWKKLKRHVMGDLQMAAVQAHDTVMQSGVL 156 Query: 180 WGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+ RE E L W++EGK+ +I IL IS TV ++ S K T + AI Sbjct: 157 AKALYLPSLSRREREILQWVAEGKSQQDIGDILSISHRTVEVHLRSGREKLGALTTAQAI 216 Query: 238 AYAVRNNI 245 A+ + Sbjct: 217 GRAIGLGL 224 >gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci] Length = 247 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 52 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPQPTQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 232 RTAKQAVYKAINMGMV 247 >gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 222 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G D L+ RE + L ++ G+T+ EIA L IS TV ++A + K R+ A+ Sbjct: 137 LGSDVVLSDRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAVLR 196 Query: 240 AVRNNIV 246 A+ ++ Sbjct: 197 AMELGLI 203 >gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 247 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 52 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 232 RTAKQAVYKAINMGMV 247 >gi|213692561|ref|YP_002323147.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524022|gb|ACJ52769.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458713|dbj|BAJ69334.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 289 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N + Sbjct: 229 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 288 Query: 246 V 246 V Sbjct: 289 V 289 >gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L + + + H +LT RE E L+ +++G T+ E+A +L IS Sbjct: 124 QAYLHHAAAKKVIEGYLQSASHDHTDAFQQLTDREKEILSLVAKGYTNKEVADLLSISAK 183 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV N+ A+IM K TR I +AV+ ++ Sbjct: 184 TVENHKANIMDKLNLNTRRDLIRFAVKRGLL 214 >gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 220 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 4/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L + Sbjct: 87 VYQALRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVL---- 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G ELT RE E L ++ G ++ EIA L ++ +TV +++ ++ K + Sbjct: 143 RGPASPHPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLR 202 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A N +V Sbjct: 203 DRTQAAVFAYENRLV 217 >gi|328883286|emb|CCA56525.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + + D + ++ L F + + + A + Sbjct: 55 DVRMPKLDGVETTRRICSQPDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLG 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGK 201 + + ++ LL + + S K+ LT RE E + +++G Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSSGKEPEHKELGRLTDREREVMLLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A + +V Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESGLV 217 >gi|196233056|ref|ZP_03131904.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222863|gb|EDY17385.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 15/163 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 F L + VF + Y S + +V + Sbjct: 58 FRLPGADGAESTAHLRTEFPDARVVVLSVFEGEEDIWRAVEAGAMGYVSKSAEVEEVLEA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +A+ A+ LT RE + L I G ++ Sbjct: 118 IRCVVGGETYFPAP-------IASKLASRRTRD--------ALTPREHQVLHHIVAGLSN 162 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV +I++ + K R+ A AV+ I+ Sbjct: 163 KEIAAALHMSEATVKLHISNTLAKLHVADRTQAAIVAVQRGII 205 >gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 247 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 +K I+ S++P ++ S +++ P F N D+ Sbjct: 52 RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L K + R+ + L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H + +L+ RE + L W++ GK EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPPTVNCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A++ +V Sbjct: 232 RTAKQAVYKAIKMGMV 247 >gi|308177198|ref|YP_003916604.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307744661|emb|CBT75633.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 230 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 8/152 (5%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 P + F + + + + + + +I Sbjct: 80 KAADGPKIIVLTTFDMDEYALRAIQAGASGFLLKDAPPEELLESVRTVNRGDAVIAPSTT 139 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISR 214 L + M K + LT RE E I+ G ++ EIA L +S Sbjct: 140 RR---LLDHMTPMLKKNAAQHDEHLIAAVESLTPREREVFGLIAVGLSNPEIAEKLFLSE 196 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ I+ K + R A+ A + +V Sbjct: 197 ATVKTHVGHILAKLEARDRVQAVVIAYQTGVV 228 >gi|149375695|ref|ZP_01893464.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] gi|149360097|gb|EDM48552.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] Length = 301 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL + F LTGRE + L WI+ GKT+ EI IL +S TVN ++ Sbjct: 218 LLRLQEVQKPSEATGALRTRFSLTGRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQ 277 Query: 224 IMRKTATKTRS 234 + RK + R+ Sbjct: 278 VFRKLGVENRT 288 >gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 8/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L + A Sbjct: 94 VYEALRAGASGFLLKDASAEELAHAVRVVAAGDALLAPNITKRLIAEFSRVTAAA----- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + +LT RE E L I++G ++ EIA L ++ TV ++ I+ K + Sbjct: 149 ---PRAPLKDRVGDLTERETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLR 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A + +V Sbjct: 206 DRTQAAVFAYESGLV 220 >gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 14/174 (8%) Query: 87 VRCMALSEKDK-YYNVLQRP-TELFCPVFHTLPENITPP-AGMDNRYCSLTFDVARIRIG 143 + + L++ K Y + P T++ H + + + + Y + R+ Sbjct: 62 IDGIELTQTFKEYLRSQKGPNTKVLILTMHDNKDAVMGAFSAGADSYSVKDVSIDRLMEA 121 Query: 144 LMLLFPKGR----IILRDRLWEIGLL-------AAYQANMFKSYDVHWGKDFELTGREVE 192 + + +I R L + L A N + + LT RE+E Sbjct: 122 IQVTSEGNSWIDPVIARTVLQQAQNLPGENTNAATVTINAVEPEYKEFLSTCPLTERELE 181 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I G+++ EIA L I+ TV ++ SI+ K R+ A A+R+ + Sbjct: 182 VLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSGWI 235 >gi|19553213|ref|NP_601215.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62390849|ref|YP_226251.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21324779|dbj|BAB99402.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326187|emb|CAF20350.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ +++G+++ EI L ++ TV +++ + K +R+ A+A A + I Sbjct: 150 LSAREIEVLSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGI 209 Query: 246 V 246 + Sbjct: 210 I 210 >gi|294813229|ref|ZP_06771872.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441661|ref|ZP_08216395.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325828|gb|EFG07471.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + D + + L F + + + + Sbjct: 55 DVRMPRLDGVEATRRICAQPDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + + ++ LL + + K+ + LT RE E + +++G Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSGGPEPRNKEVDRLTEREREVMMLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAGRLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 217 >gi|27376076|ref|NP_767605.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349215|dbj|BAC46230.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 306 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + + LT RE E L W+S+GKT+ +IA ILG+S TV+ ++ I K + R Sbjct: 233 ALPPEFTSELGLTTREGEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 291 >gi|21220639|ref|NP_626418.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256788218|ref|ZP_05526649.1| two component system response regulator [Streptomyces lividans TK24] gi|289772111|ref|ZP_06531489.1| two component system response regulator [Streptomyces lividans TK24] gi|5578847|emb|CAB51249.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289702310|gb|EFD69739.1| two component system response regulator [Streptomyces lividans TK24] Length = 227 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 L EQ+ D +V D +A + L + F + Sbjct: 43 LAAEQRAD-VVLMDIRMPGTDGLAATRMISADPSLAHVRVVILTTFEVDDYVVQSLRAGA 101 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKD 183 + + + + + + ++ GL+A + A + + + Sbjct: 102 SGFLGKGSEPEELLSAIRVAAGGEALLSPTATK--GLIARFLAQQDTTDEDRDPARAERL 159 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++ G ++DEIA L +S TV ++ M K + R+ + A + Sbjct: 160 ESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYES 219 Query: 244 NIV 246 +V Sbjct: 220 GLV 222 >gi|325000860|ref|ZP_08121972.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 222 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ REVE L +++G+++ EI L +S TV ++++ I RK T R+ +A A Sbjct: 156 NTPRELSAREVEVLQLVADGQSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALA 215 Query: 241 VRNNIV 246 +R ++ Sbjct: 216 MRAGVI 221 >gi|309813018|ref|ZP_07706746.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] gi|308433090|gb|EFP56994.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] Length = 258 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%) Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 W A ++ S G+ +LT RE E L + G ++ EIA L + TV Sbjct: 168 WPFASSAHSTPSLSPSRTGDGGRLDDLTPREREVLGLLGRGLSNAEIAAALFVGEATVKT 227 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++ K + R A+ A +V Sbjct: 228 HVSNVLMKLGLRDRVQAVVAAYETGLV 254 >gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni CNB-2] Length = 274 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 ++AN + LT REVE L I++GK+S E+A L IS TV+ +I +I K Sbjct: 196 FKANFHEESIFKHKSFESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYGK 255 Query: 228 TATKTRSGAIAYAVRNNIV 246 +TR+ A+ A+ I+ Sbjct: 256 MQVRTRAQAVRCAILIGII 274 >gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 251 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 33/238 (13%) Query: 29 RSDLLARMIPLD---------------CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73 R D+ R+I + + + E AS + D F Sbjct: 26 RGDIFPRLIAMQKAINARSFAVFRVAGSGLPRKRMLQCECESWAASGMVGSYSDAFVSCY 85 Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNRYCS 132 D ++S + + L + F LP P + Sbjct: 86 GDLLLSH------IDDLLLPLMWNAKDNATFCISSEFGAFVSRLPAGNLP-------FSG 132 Query: 133 LTFDVARIRIG---LMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTG 188 + F V +G ++ + D + ++ ++ + L+ Sbjct: 133 VAFPVRLGAVGNGYVIFALNGSEDLDSDVMIDMHNRSCKLMMDILSLSERKVAPSEALSD 192 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ CL +G+ S+EIA LG+S +TVN Y+ S K + R AIA A+R + Sbjct: 193 REIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250 >gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 220 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 7/157 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 VR + ++ ++ E+ V T ++ M+ Y + Sbjct: 55 VRMPIMDGVAAMRSLAEQQPEIKVLVLTTFDDDEYVTQAMESGAKGYLLKDTPSDELAQA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ KG L L+E + A +A+ + +LT RE+E L I +G ++ Sbjct: 115 IRAVY-KGYTQLGPGLFEKVMAARSKAS---RDEPLPDNLQDLTPRELEVLRLIGKGYSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EIA L IS TV N+++SI+ + R+ A Sbjct: 171 REIAQELFISERTVKNHVSSILSSLNLRDRTQVALLA 207 >gi|254393192|ref|ZP_05008347.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294811637|ref|ZP_06770280.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440178|ref|ZP_08214912.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706834|gb|EDY52646.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294324236|gb|EFG05879.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L+A + Sbjct: 93 VYEALRAGASGFLLKDASAAELAHAVRVVAAGDALLAPA---------VTKRLIAEFSRL 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE E L I++G ++ EIA L ++ TV ++ I+ K + Sbjct: 144 TGAPRAPLRERVGTLTERETEVLALIAQGLSNAEIATALVVAEQTVKTHVGRILVKLGLR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A + +V Sbjct: 204 DRTQAAVFAYESGLV 218 >gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 15/185 (8%) Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENI 120 + + V + P LV + + + + + EL P Sbjct: 43 AEAGDVPSAERAVRAHHPHVLVLDLNMPGEQSLPAIPRLVAELPETAVVVLTMQQDPAFA 102 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 R L + + L +GR L L + Sbjct: 103 REALRSGARGYVLKEAADDELVQAVRLAREGRTYLNPEL----------GARMAAEPPPS 152 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G +LT RE+E L I+ G T+ EIA L +S TV ++ A I +K +R+ + YA Sbjct: 153 GPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYA 212 Query: 241 VRNNI 245 + + + Sbjct: 213 LDHGL 217 >gi|302531265|ref|ZP_07283607.1| response regulator [Streptomyces sp. AA4] gi|302440160|gb|EFL11976.1| response regulator [Streptomyces sp. AA4] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D + L + + G ++ P L DR G + Sbjct: 89 VYAALQGGASGFLLKDTQPDYLVSALRSVADGDAVMSPSVTRRLLDRFVGSG---GSEMR 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 DV LT RE E L I++G ++ EIA L +S TV ++ I+ K + Sbjct: 146 DPAELDV-------LTDREREVLVLIAKGMSNVEIAETLFLSEATVKTHVGRILSKLDLR 198 Query: 232 TRSGAIAYAVRNNI 245 R A+ A + Sbjct: 199 DRVQAVVLAYETGL 212 >gi|187251602|ref|YP_001876084.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186971762|gb|ACC98747.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 225 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L F I N Y S + + + +G +I + L+ Sbjct: 85 LMLSSFEDEAHVIEAIQAGANGYLSKMLPASELLNSIKTFTSEGLMIPQ------QLMGK 138 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + K D LT E++ ++ + +G ++ E+A L S T+ N++ S K Sbjct: 139 LLHGLRKMGDNGTPSQALLTRTEIKVISLLGKGLSNKELATELSCSVKTIKNHLNSAFHK 198 Query: 228 TATKTRSGAIAYAVRNNIV 246 +R+ A+ A+ ++ Sbjct: 199 LGVGSRTEAVVKAIEKGLI 217 >gi|161724871|emb|CAO85746.1| rR protein [Pseudomonas putida] Length = 240 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 21/196 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-PV 112 Y +L+ D + L I PF +A S + + C Sbjct: 63 SYKDNKSYLI---DPIIKHGLREIT----PFSWHEALANSGPEGVDFFRRATRYRICSGT 115 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQA 170 TL + +C+L+ A ++ K + L+ L + L+ + + Sbjct: 116 TFTLRD-------ASGTFCALSVCDAGSQVDFDRRMAKQQSQLQMLLIKFHSWLMTSRKT 168 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + S D L+ RE+ L + GKT EIA GIS TV ++++I K Sbjct: 169 DQLFSS----AADGPLSTRELGVLQLVMRGKTYREIATDCGISERTVKFHMSNISGKLQV 224 Query: 231 KTRSGAIAYAVRNNIV 246 A+ A R I+ Sbjct: 225 GNAKQAVYEAKRQGII 240 >gi|119491420|ref|ZP_01623439.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119453415|gb|EAW34578.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L +++G ++ +IA L I TV +++ I+ K R+ A+ AV+ Sbjct: 144 NPELSERELEVLRSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVK 203 Query: 243 NNIV 246 IV Sbjct: 204 RGIV 207 >gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + + + L F + + Sbjct: 50 DVVLMDIRMPEVNGIEATREIAAADGATKVLVLTT--FDLDEYVYQALRAGASGFLLKDA 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 ++ G+ ++ ++ + + + + +LT RE E L Sbjct: 108 SARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAYGDLTERETEVLV 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A +V Sbjct: 168 LIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 218 >gi|224552993|gb|ACN54748.1| PagR [Pantoea agglomerans] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWIS 198 + + ++ I R I LA Y H K+ L+ RE + L W+S Sbjct: 101 VLLSVISHKDCDINIENYRPKFITFLANLHQKTLNLYSQHHQKKNVFLSPRERQILKWVS 160 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT E+++IL I+ TV ++ ++M+K A+ V ++ Sbjct: 161 AGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGVELQLL 208 >gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 264 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 44/92 (47%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 + RL L+ +S L+ RE E L ++ G ++EIA+ L IS Sbjct: 173 ITPRLARRLLVHLDHQRSNQSPVRPPETKAALSAREREVLRLVATGYVTEEIALQLTISA 232 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TVN ++ +I RK TR+ A+++A ++ Sbjct: 233 QTVNAHVKNIYRKLHAHTRAQAVSFASHRGLL 264 >gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] Length = 92 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S L+GRE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R Sbjct: 3 SGGTPGSMSVSLSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRV 62 Query: 235 GAIAYAVRNNIV 246 + +A+ + + Sbjct: 63 ALLNWAMDHGKI 74 >gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] Length = 97 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 43/74 (58%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S + + L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 6 MTSGEGTGSMNASLSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKN 65 Query: 233 RSGAIAYAVRNNIV 246 R + +A+ + + Sbjct: 66 RVALLNWAMDHGKI 79 >gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] Length = 921 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 25/194 (12%) Query: 59 SHFLLVRWDLFQEQKLDSI----VSSDWPFDLVRCMALSEKDKYYNVLQRPT--ELFCPV 112 + LL QE + D + + + W L + + + + + + Sbjct: 746 ACILLADMVSDQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEHQHLKGL 805 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + P N S + G+ + R+ + G Sbjct: 806 FLEAGDTLQPLLAGMNESSS----ACKEEGGVHEPWADKRVPADGTPFNSG--------- 852 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D+H EL+ RE + L I+EG+ + EIA L IS TV +I +I K + Sbjct: 853 --SPDIHG----ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNS 906 Query: 233 RSGAIAYAVRNNIV 246 R+ A++ A+ ++ Sbjct: 907 RTQAMSRALEMKLL 920 >gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 2/134 (1%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + SL V I G LL P + +R AA A + Sbjct: 109 FTALDAGASGFVLKSASPESLVEAVHVIARGDALLSPDVTRRVIERFGRGPADAASTAPI 168 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT RE+E L ++EG + EIA L + TV +++ ++ K + Sbjct: 169 --PTIPTDPRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRD 226 Query: 233 RSGAIAYAVRNNIV 246 R A+ +A IV Sbjct: 227 RVQAVVFAYERGIV 240 >gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 219 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 5/171 (2%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVL---QRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 ++S P ++ + + + + P L V + I G Y + T Sbjct: 50 INSTKPHVVLLDVHMPDGGGVAVLRGIDSGPVCLALSVSDAAEDVIAVIRGGARGYVTKT 109 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + G+ + + RL +L ++ + LT RE+E L Sbjct: 110 ISGSELAEGVRRVAGGD-AVFGPRLAGF-VLDSFTGRSNAPEPQLDPELDSLTPRELEVL 167 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 168 RLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218 >gi|117620400|ref|YP_858390.1| csgAB operon transcriptional regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561807|gb|ABK38755.1| probable csgAB operon transcriptional regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 219 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + R+ +G+ + I R LL K + H LT RE E + Sbjct: 117 PLDRLVLGIRKVLEGEYWIPR------HLLCDLVNYYRKGGEHHLRNQTLLTVREQEIIR 170 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ G ++ EIA L +S +T+ +++ ++ +K K R A+++A Sbjct: 171 YLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVKNRLQAVSWA 215 >gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 224 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 4/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L + Sbjct: 91 VYQALRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVL---- 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G ELT RE E L ++ G ++ EIA L ++ +TV +++ ++ K + Sbjct: 147 RGPASPHPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLR 206 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A N +V Sbjct: 207 DRTQAAVFAYENRLV 221 >gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 220 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 10/182 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYY--NVLQRPTELFCPVFHTLPENITPPAGM-- 126 E+ L ++ P ++ + L + L+ + + T+ ++ G Sbjct: 43 EEALTALEVQSAPELILLDIGLPGMNGISAMKPLRAASPALKIIILTVFDDHNRIFGAIC 102 Query: 127 --DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + Y T I + + G + +I + Sbjct: 103 AGADGYLLKTSSAEEIARAIEEVLSGGASMTP----QIARKVLELMSNTPPKATVPKSPS 158 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L + G T DEIA L +S +T++ ++ +I +K R+GA+A A+R+ Sbjct: 159 DLSLREQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDG 218 Query: 245 IV 246 +V Sbjct: 219 LV 220 >gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] Length = 250 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 30/231 (12%) Query: 43 VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102 + + + G + + +++ D ++ S++P + V + V+ Sbjct: 13 STIQSYLNRKLKSYGDPKY--AYLIMNKKKPTDVVIISNYPTEWVDIYRNNNYQHIDPVI 70 Query: 103 QRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLL-- 147 P F + N++ + N Y + D L + Sbjct: 71 LTAINKISP-FSWDDDLVISSKLKFSRIFNLSKDYDIVNGYTFVLHDPGNNLAALSFMIE 129 Query: 148 ---FPKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLT 195 + I+++ ++ +L + Y+ + + + RE E L Sbjct: 130 EHRSEELEEIIQNNKDKLQMLLISAHEKLTSLYREMSRNRNNSKSQEADLFSQRENEILH 189 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W S GKT EIA+ILGI+ +TV +I ++++K AI V N++ Sbjct: 190 WASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 237 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V +R+G LL P L +R Sbjct: 103 VYAALAAGASGFLLKDVSPEQLVGAVRLVRLGDALLAPAITRRLVERFART--------- 153 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT REVE L ++ G ++ E+A L +S TV ++A IM K + Sbjct: 154 --DRGTTLHRELSTLTPREVEVLQLLATGLSNAELAARLVLSEATVKTHVARIMAKLGLR 211 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 212 DRAQAVVVAYETGLV 226 >gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1] Length = 210 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Query: 162 IGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + L Y H K+ L+ RE + L W+S+GKT EIA+IL I+ TV + Sbjct: 123 MSFLIHLHQKTLNLYSQHQQKKNAFLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFH 182 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 + ++M+K +A++ Sbjct: 183 MGNVMKKLGVNN----ARHAIKLG 202 >gi|17229630|ref|NP_486178.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131229|dbj|BAB73837.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 209 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L +++G ++ +IA L I TV +++ I+ K R+ A+ AV+ Sbjct: 144 NPELSERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVK 203 Query: 243 NNIV 246 IV Sbjct: 204 RGIV 207 >gi|325282407|ref|YP_004254948.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314216|gb|ADY25331.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 222 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D +L + R+ G LL P + ++ L + Sbjct: 97 VFEAVKAGARGYVLKDADSSALLDAIRRVAAGEALLNPD---MAQNVLDDF--------- 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K ++ K +L RE L +++G ++ +IA+ L IS TV N ++ I K Sbjct: 145 RDKREELPQEKHNDLNERETMILKLLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLN 204 Query: 232 TRSGAIAYAVRNNI 245 R+ A YA+R I Sbjct: 205 NRTQAALYAIREGI 218 >gi|229493356|ref|ZP_04387145.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229319672|gb|EEN85504.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 220 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + P + + + + + L Sbjct: 50 DVVLMDVRMPEMNGLDAAR-QILSAGWEPPVRVLMLTTFDIDDYVYEALSVGASGFMLKD 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + + +G+ +L + L A + + LT RE E L Sbjct: 109 APAEELIRAVRVVAEGQALLAPTVTR--RLIADVTSRRAAPRARPAALDALTPREREVLE 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV ++ ++ K + R+ A+ A + +V Sbjct: 167 LIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217 >gi|254382255|ref|ZP_04997616.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] gi|194341161|gb|EDX22127.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] Length = 210 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + RP V T + A ++ Sbjct: 55 MDLQFGSGMHGSAATRLITARPGAPRVLVLTTYDTDADILAAVEAGASG----------Y 104 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P + R G A A + D LT RE+E L +++G ++ Sbjct: 105 LLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADGLSN 164 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +I+ L +S+ TV +++ I K +R+ A+A A ++ Sbjct: 165 QQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAATRRLI 207 >gi|21242903|ref|NP_642485.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108399|gb|AAM37021.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 213 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L ++ G ++ +I L IS TV ++ +I+ K + R+ A+ A+R Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+GREVE L +++G+++ EI L +S TV ++++ I RK T R+ +A A Sbjct: 155 NTPRELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALA 214 Query: 241 VRNNIV 246 +R ++ Sbjct: 215 MRAGVI 220 >gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans] gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans] Length = 210 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE + L W+ GKT E+AVIL I+ TV ++ ++M+K + A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 242 RNNIV 246 ++ Sbjct: 204 ELRLL 208 >gi|302867410|ref|YP_003836047.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506180|ref|YP_004085067.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570269|gb|ADL46471.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412799|gb|ADU10916.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 227 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 11/223 (4%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 P R L L + + VG + + +L + + L +V D Sbjct: 9 PVRILLADDQPLLRTGFRMVLGAEDDLDVVGEAGDGVEAVELSR-RLLPDVVLMD----- 62 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143 +R L ++ + V T ++ + + + Sbjct: 63 IRMPRLDGVAATRAIVSARLPVRVLVLTTFEQDEHVVGSLRAGAGGFLTKDVPAEDLVAA 122 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + G ++ L LL + + LT RE E LT ++ G ++ Sbjct: 123 IRTVAAGGAVMSPRILRR--LLDRFAQVLPDPAAAPARALEPLTDREREVLTHMARGLSN 180 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA +L +S TV ++ ++ K + R A+ A +V Sbjct: 181 AEIARLLSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYETGLV 223 >gi|300784547|ref|YP_003764838.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794061|gb|ADJ44436.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 186 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ REVE L +++G+++ EI L +S TV ++++ I RK T R+ +A A Sbjct: 120 NTPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALA 179 Query: 241 VRNNIV 246 +R ++ Sbjct: 180 MRAGVI 185 >gi|17229196|ref|NP_485744.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17135524|dbj|BAB78070.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 239 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 AN ++ + LT RE+E L I EG ++ IA L I+ TV ++ +I+ K Sbjct: 162 ANSETEDNLETIDSYTLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLC 221 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A A+R+ +V Sbjct: 222 ADDRTQAAVRALRSGLV 238 >gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 211 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 18/163 (11%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143 +R + D + + V T + G+ Y + + Sbjct: 62 LRMPKMEGADAIAAICAKFKHARIVVLTTFDGDEDIYRGLRAGAKGYLLKGAEPNELLDA 121 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + + I +AA A S EL+ RE+E L I++GK + Sbjct: 122 IRTVHKGQKYIPPT-------IAAKLAERMSSE--------ELSDRELEVLRLIAKGKNN 166 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +I+ +L I+ +TV + +I K R+ A+ A+ IV Sbjct: 167 QQISNVLNIAESTVRFHTNNIFGKLNVSDRTQALVTALNRGIV 209 >gi|305680025|ref|ZP_07402835.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660645|gb|EFM50142.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 232 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V ++ + D L V + ++ P L RL Sbjct: 96 VVQSIEAGASGFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLR-----THMAPT 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + ++ G LT RE E L I+ G ++ EIA L IS TV ++ ++ KT ++ Sbjct: 151 VDPMVALNRGLVEPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSR 210 Query: 232 TRSGAIAYAVRNNIV 246 R A+ YA ++ Sbjct: 211 DRVHAVLYAFDRGVI 225 >gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 40/63 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G+++ EIA LGI+ TV +++S++ K + R+ A YA++ Sbjct: 142 VDLTPRESEVLVCITQGRSNQEIADELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQR 201 Query: 244 NIV 246 +V Sbjct: 202 GLV 204 >gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 211 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 9/178 (5%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 EQ + +V D ++ + + K + +R ++ + T ++ + Sbjct: 41 HEMEQHIIDLVIMDIRMPVMNGLEATRK-----IKERWPDVKILILTTFNDDEYAVQALK 95 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + A + + ++ ++ + +AA D L+ Sbjct: 96 DGANGFLLKTAEQQKLIQAIYSC----MKGGMTIHEDVAAKMVPKLLQKSKQVRVDIPLS 151 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE+ + EGKT+ EIA L +S TV N+I I++K + R+ YA++++I Sbjct: 152 PRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKHDI 209 >gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 1/140 (0%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L V + I Y + + + +I + ++ Sbjct: 82 LMLTVSEDAEDLIETLRAGACGYLLKNIEADALIAAINRAAEGESVISPQMMGKLLKGVR 141 Query: 168 YQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + + + + +L+ RE E L +++ G+++ EIA L ++ +TV ++ +++R Sbjct: 142 GELPVKTAAQTAVASELNKLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLR 201 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K +R A +AV IV Sbjct: 202 KLNLTSRVQAAVFAVEQGIV 221 >gi|284034127|ref|YP_003384058.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813420|gb|ADB35259.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 971 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG+T+ ++A L IS TV+ ++++I+ K ++R+ A A A R+ + Sbjct: 910 LTARETEVLALLAEGRTNRQLARELYISEKTVSVHVSNILAKLGVRSRTEAAAVARRDGL 969 Query: 246 V 246 + Sbjct: 970 L 970 >gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107] gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107] Length = 225 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + D L + +R G + IL R+ Sbjct: 104 VLGAIEAGAVGYLLKDADSLELVEAIQELRAGRSPISSSIARILVRRM------------ 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ELT RE E L I++G T E+A LGISR+TV +I +I RK A Sbjct: 152 ---GGSTPATPTPELTPRETEILRGIAKGFTYTELAEWLGISRHTVPVHIKNIYRKLAAN 208 Query: 232 TRSGAIAYAVRNNIV 246 RS A+ A + ++ Sbjct: 209 NRSEAVYEASKRGLI 223 >gi|134098288|ref|YP_001103949.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004292|ref|ZP_06562265.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910911|emb|CAM01024.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P + R + AA Sbjct: 95 VYEALRAGASGFLLKDALPADLIAGVRVVAGGQALLAPT---VTRRLIEHFSRTAAPPIT 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 DV LT RE E L ++ G ++ EIA L I+ TV ++++ I+ K + Sbjct: 152 NPPRLDV-------LTDREREVLVHVARGLSNTEIADALFIAEQTVKSHVSRILGKLGVR 204 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 205 DRVQAVVVAYETGLV 219 >gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 224 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 6/164 (3%) Query: 87 VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR L + + R P L F + + + + Sbjct: 56 VRMPRLDGVEATRRIRARTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLSA 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + + ++ LL + + K E LTGRE E + +++G + Sbjct: 116 IRSVHSGDAVVAPSTTRR--LLDRFSPMLPSGRKEPQDKHVEKLTGREREVMMLVAQGLS 173 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L +S TV ++ I+ K + R + A +V Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b] gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b] Length = 258 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + ++ LT RE + L W + GKTS E A+IL +S T+ YI + K T++ Sbjct: 182 SANTGGKEEPRLTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKA 241 Query: 235 GAIAYAVRNNIV 246 A+ A+ ++ Sbjct: 242 HAVCKALSLGLI 253 >gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 211 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 9/178 (5%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 EQ + +V D ++ + + K K +R ++ + T ++ + Sbjct: 41 HEMEQHIIDLVIMDIRMPVMNGLEATRKMK-----ERWPDVKILILTTFNDDEYAVQALK 95 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + A + + ++ ++ + +AA D L+ Sbjct: 96 DGANGFLLKTAEQQKLIQAIYSC----MKGGMTIHEDVAAKMVPKLLQKSKQVRVDIPLS 151 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE+ + EGKT+ EIA L +S TV N+I I++K + R+ YA++++I Sbjct: 152 PRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKHDI 209 >gi|238061024|ref|ZP_04605733.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882835|gb|EEP71663.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 268 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 37/81 (45%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + LT RE++ L ++EGK++ EI L +S +TV + + Sbjct: 187 TTAAAGQRPAPARGGRSAIGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLF 246 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK + R+ A+A R +V Sbjct: 247 RKLGARDRAHAVAAGFRAGLV 267 >gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 20/202 (9%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP----FDLVRCMALSEKDKYYNVLQRPTE 107 L +G H + V + + ++S P DL + + V + P+ Sbjct: 16 LVALLGGEHDMEVVGEAADGEDALRGIASHEPDVVLMDLQLGDGIDGVEATRRVRELPSP 75 Query: 108 LFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 V T + +D Y + G+ ++ Sbjct: 76 PQVLVLTTYETDADIVRAIDAGATGYLLKACPPEELFQGIRAAARGETVLSP-------R 128 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A + L+ REVE L ++ G + EIA L I+ TV ++ I Sbjct: 129 VATRMMRRMRDPGPA------LSAREVEILELLASGAGNREIARRLFITEATVKTHLVHI 182 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K TR+ A+ AV ++ Sbjct: 183 YGKLGVDTRTAAVTAAVERRLI 204 >gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 93 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 41/74 (55%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D L+ RE+E + ++ G T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 1 MFSGDFSNSVQMSLSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKN 60 Query: 233 RSGAIAYAVRNNIV 246 R + +A+ + + Sbjct: 61 RVALLNWAMDHGKI 74 >gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125] gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125] Length = 209 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 38/75 (50%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M + ELT RE+E L I EGK++ IA L I TV ++++I+ K + Sbjct: 134 MERMRSRKKELHEELTPRELEVLRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLE 193 Query: 232 TRSGAIAYAVRNNIV 246 R+ YA R+ +V Sbjct: 194 DRTQIAVYAHRHRLV 208 >gi|225020339|ref|ZP_03709531.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii ATCC 33806] gi|224946728|gb|EEG27937.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii ATCC 33806] Length = 233 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 5/135 (3%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V ++ + D L V + ++ P L RL Sbjct: 97 VVQSIEAGASGFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLR-----THMAPT 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + ++ G LT RE E L I+ G ++ EIA L IS TV ++ ++ KT ++ Sbjct: 152 VDPMVALNRGLVEPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSR 211 Query: 232 TRSGAIAYAVRNNIV 246 R A+ YA ++ Sbjct: 212 DRVHAVLYAFDRGVI 226 >gi|241518604|ref|YP_002979232.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863017|gb|ACS60681.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 864 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 +G + R I+R RL + LT RE++ L W+ G Sbjct: 766 GMGASAVAQHVRAIIRGRLGRVAA--------RGPRASTKANPAGLTTREMDVLRWVDLG 817 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 K++ EIA +L +S TV+++++SI+ K KTR+ A ++A ++ Sbjct: 818 KSNGEIAALLFVSAKTVDHHVSSILAKLNAKTRTAAASHARSRGLL 863 >gi|119960873|ref|YP_948224.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119947732|gb|ABM06643.1| putative two-component system response regulator [Arthrobacter aurescens TC1] Length = 237 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 1/135 (0%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQAN 171 F + + + + + +F +I + +A Sbjct: 99 FDLDEYALAAIQAGASGFLLKDAPPEELLEAIRTVFRGDAVIAPSTTRRLLDHVAPLLRT 158 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 H LT RE E I++G+++ EIA L +S TV ++ I+ K + Sbjct: 159 QTPEQTEHAAAVERLTAREREVFQLIAQGQSNPEIAAGLFLSEATVKTHVGHILAKLGAR 218 Query: 232 TRSGAIAYAVRNNIV 246 R + A +V Sbjct: 219 DRVQVVVIAYETGVV 233 >gi|86157284|ref|YP_464069.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773795|gb|ABC80632.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 211 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG + IA LGIS +T ++ +I+ K +R+ AI A R Sbjct: 148 PLTPREREVLALVAEGLGNKGIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 207 Query: 245 IV 246 +V Sbjct: 208 LV 209 >gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 217 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 12/133 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + D+ L + R+ G L P I R L E+ Sbjct: 94 FPAIKAGAMGYLLKDSTPDELLEAIRRVHRGEPSLAPD---IARKVLSELSQ-------- 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE++ L +++GK++ IA + +S TV ++ SI+ K Sbjct: 143 -PGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMTSILSKLHLAN 201 Query: 233 RSGAIAYAVRNNI 245 R A YA+R I Sbjct: 202 RVEATLYALREGI 214 >gi|254422719|ref|ZP_05036437.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190208|gb|EDX85172.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 235 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L I G ++ +IA L ++ TV ++ +I+ K R+ A A+R Sbjct: 172 YPLTERELEILECIVSGCSNAQIAEKLFVTVGTVKTHVRNILNKLGASDRTQAAVRALRA 231 Query: 244 NIV 246 ++ Sbjct: 232 GLI 234 >gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 211 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE+E L I +G + +IA L IS TVN +I +I+ K R+ A+ AVR Sbjct: 146 EESLTSRELEVLHLIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVR 205 Query: 243 NNIV 246 ++ Sbjct: 206 RGLL 209 >gi|325000399|ref|ZP_08121511.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 219 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 13/176 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRY 130 +V+ P ++ + + D ++++RP V T + + + Sbjct: 43 LVARLRPDVVLMDIRMPGVDGITATRDLVRRPDPPRVLVLTTFGHDRYVYDALRAGATGF 102 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 I + + ++ L + F +D LT RE Sbjct: 103 LLKRTPPRDIVRAVHTVAAGESLLFPAALRGLAA-------GFAPDGGDHLQDAGLTARE 155 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++ EIA L + TV ++A ++ KT ++ R+ A+ A + V Sbjct: 156 GEVLALMARGLSNAEIARELYLGVETVKTHVAGVLAKTGSRDRTQAVVAAYESGFV 211 >gi|78047743|ref|YP_363918.1| two-component system LuxR family regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036173|emb|CAJ23864.1| two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 213 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L ++ G ++ +I L IS TV ++ +I+ K + R+ A+ A+R Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|325264809|ref|ZP_08131538.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] gi|324030101|gb|EGB91387.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] Length = 198 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K D+ K T RE E W+ +GK++ +IA IL +S +TV ++++I ++R Sbjct: 117 KESDMKILKGHGFTEREAEVTYWLCQGKSNGDIAYILNLSVSTVKKHLSNIFDNMGVRSR 176 Query: 234 SGAIAYAVR 242 S A+A A+ Sbjct: 177 SAAVALALE 185 >gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 246 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 24/191 (12%) Query: 63 LVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP- 117 + R+ L +D I+ S PFD R + ++E + + H + Sbjct: 65 VSRYLLNDYINVDPIIREGFSRQLPFDW-REIDITETAQ--------EFMVDAELHGIGS 115 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 ++ P +R L+ + + L+ R L + L E+G L + ++ Sbjct: 116 NGVSVPIVDKSRRSLLSINSQKSDDEWTLI---ERQFLPEWL-ELGFL----LHRKAVFE 167 Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 +H D L RE+ECL W S GK S +I ILG+S +T Y+ + K T S Sbjct: 168 LHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSA 227 Query: 236 AIAYAVRNNIV 246 AIA+AV N++ Sbjct: 228 AIAHAVHLNLI 238 >gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 247 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 +K I+ S++P ++ S +++ P F N D+ Sbjct: 52 RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L K + R+ + L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H + +L+ RE + L W++ GK EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPPTANRKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A++ +V Sbjct: 232 RTAKQAVYKAIKMGMV 247 >gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0205] Length = 89 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 39/64 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +L+ RE+E + +++G T+ EI L IS+ TV+N+++++ KT K R + +A+ Sbjct: 11 PMDLSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMD 70 Query: 243 NNIV 246 + + Sbjct: 71 HGKI 74 >gi|311895574|dbj|BAJ27982.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 220 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 10/182 (5%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 R Q LD + S ++ R + ++ VL E V + T Sbjct: 41 ARASTPQVVVLDLNLPSLSGAEVCRQVVAADPAVRVLVLSASGE-HADVLEAVKSGATGY 99 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 L V R +G + P ++ L E LA + Sbjct: 100 LVKSAGREELLDAVRRTAVGDPVFTPGLAGLV---LGEFRRLAT------EPGTSAEPAA 150 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L +++G + +IA L +S TV N++ + + K R + YA+ Sbjct: 151 PQLTPRETEVLRLVAKGLSYRQIADRLVLSHRTVQNHVQNTLGKLQLHNRVELVRYAIEQ 210 Query: 244 NI 245 + Sbjct: 211 GL 212 >gi|144899411|emb|CAM76275.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 189 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L W ++GKT+ E + ILGIS TV ++ + RK T++ I A R + Sbjct: 127 LTAREREVLLWAAQGKTAWETSAILGISSKTVEFHLGNCGRKLGAATKAQTILAAARRGL 186 Query: 246 V 246 + Sbjct: 187 L 187 >gi|302519720|ref|ZP_07272062.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] gi|302428615|gb|EFL00431.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] Length = 140 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + + A + + ++ ++ L A A + + L Sbjct: 19 ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRR---LIADFARQRPAPGKPALRLKAL 75 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E LT ++ G+++ EIA L ++ TV +++ ++ K + R+ A+ +A + +V Sbjct: 76 TERETEVLTLVARGRSNTEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 135 >gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 63/175 (36%), Gaps = 6/175 (3%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYC 131 V P ++ + + E + + R L F + + Sbjct: 53 VRELKPDVVLMDIRMPELNGIEATREIVAADGRTKVLVLTTFDLDEYVYQALRAGASGFL 112 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 ++ G+ ++ ++ + + A + G ELT RE Sbjct: 113 LKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSRLAEAPRLPAAAPGAYGELTERET 172 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I++G ++ EIA L ++ +T+ +++ ++ K + R+ A +A +V Sbjct: 173 EVLILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 227 >gi|311899662|dbj|BAJ32070.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 6/164 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143 VR L + R V T + + ++ G Sbjct: 56 VRMPVLDGVAATAELSVRCPGSRVLVLSTFESDAYVFAAVRAGAAGFLLKRTPPEQLLDG 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + + ++ + LA + + LT RE + L + G++ Sbjct: 116 IRTVASGEALLSPSVTRRV--LAEFARAAPPPPSPAVRAVLDRLTPREHQVLRLLGRGRS 173 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L + TV ++ ++ K + R A+ +A + +V Sbjct: 174 NPEIAAALYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDHGLV 217 >gi|269957384|ref|YP_003327173.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306065|gb|ACZ31615.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 5/165 (3%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + R L+ + P + F + + + + + Sbjct: 67 MPRMDGLTATAALTSGADAPRVVVLTTFDIDEYVLEAIRSGASGFMLKDAPPEEMLGAIR 126 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGK 201 + +I + L A + D LT RE E L ++ G+ Sbjct: 127 TVHAGDAVIAPSSTRRL-LEHLVTALPTPAPDTPPSPAHAALATLTDREREVLELMARGR 185 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L ++ TV ++ I+ K + R A+ A +V Sbjct: 186 SNTEIAADLFVAEATVKTHVGRILAKLDARDRVQAVVLAYETGVV 230 >gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121] gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121] Length = 219 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 5/171 (2%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVL---QRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 ++S P ++ + + + + P L V + I G Y + T Sbjct: 50 INSTKPHVVLLDVHMPDGGGVAVLRGIDSGPVCLALSVSDAAEDVIAVIRGGARGYVTKT 109 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + G+ + + RL +L ++ + LT RE+E L Sbjct: 110 ISGSELAEGVRRVAGGD-AVFGPRLAGF-VLDSFTGRSNAPEPQLDPELDSLTPRELEVL 167 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G T EIA L IS TV + ++++RKT R+ +A R I Sbjct: 168 RLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218 >gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 210 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + E L +F L+ REVE L SEG+T+ I L Sbjct: 112 AEAVRAAARGETVLTGRLAGRLFTGMRRRGEPAAVLSPREVEVLRLASEGRTNAAIGRAL 171 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++ + K R+ A++ A+R ++ Sbjct: 172 HISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGLL 207 >gi|239983739|ref|ZP_04706263.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291455547|ref|ZP_06594937.1| two component transcriptional regulator [Streptomyces albus J1074] gi|291358496|gb|EFE85398.1| two component transcriptional regulator [Streptomyces albus J1074] Length = 225 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 78/219 (35%), Gaps = 7/219 (3%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 PTR + + + VG + L DL + + D +V +D Sbjct: 7 PTRILIADDQEDVRSGFRLILGSQPDMSVVGEAADGLTAVDLARALRPD-LVLADIRMPG 65 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V + L+ + V P + V T + + + C F + R G++ Sbjct: 66 VDGLELTRRLAGPGV---PDPIRVLVVTTFDHDSYVRTALHDGACG--FLLKRSGPGVL- 119 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + + D L L + S + LT RE E +++G T+ EI Sbjct: 120 IEGVRAAMAGDILISPQLTVRLLQTLTPSAPAPPTRLTPLTARETEIARLVAQGHTNAEI 179 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L IS T +IA+I K + R G A+ N + Sbjct: 180 GMTLSISPGTAKTHIANIQTKLKARNRVGIAAWTWENGL 218 >gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 238 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 2/134 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L L V + G +L P L RL + Sbjct: 93 VWGALRAGAAGFLLKRASPERLIDAVHAVAAGEAVLDPAVTRDLLGRL--LAAPEPPPGP 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G LT RE E L +EG ++EIA +L ++ +TV ++ I+ K + Sbjct: 151 SAPPPGSVPGPLAALTVREREVLRLAAEGHPNEEIAALLHLAESTVKTHVKRILGKLGAR 210 Query: 232 TRSGAIAYAVRNNI 245 RS A+A A R+ + Sbjct: 211 DRSQAVAAAYRHGL 224 >gi|21224169|ref|NP_629948.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|3036890|emb|CAA18523.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 229 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 16/234 (6%) Query: 19 RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78 + P R ++ + + + + + VGA+ ++ +V Sbjct: 1 MSEVPGRRPARVVVVDDQTVVREGIVMLLGLLPGVDVVGAAG---------DGEEAVRVV 51 Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNRYCS 132 + P ++ + + D + T++ + E++ P Y + Sbjct: 52 AELAPDVVLMDLRMPRCDGVEATRRIRSEHPGTQVVVLTTYADDESLFPALHAGARGYLT 111 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 I + + G L + L ++ LT RE E Sbjct: 112 KDAGGDEIVRAVHSVL-SGDAGLAPSIQRRLLEWLSESESEPRPTGPPEPPDGLTTRETE 170 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+EG T+ +IA L +S TV +I ++ KT K R+ A+ YA +V Sbjct: 171 VLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 224 >gi|302540643|ref|ZP_07292985.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458261|gb|EFL21354.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 227 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 16/225 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ R++ D L + ++ QE ++V P ++ + Sbjct: 1 MIIRVLLADDQALLRATFRILID-SEPDMTVVAEATDGQEALDLALV--HEPDVVLMDIR 57 Query: 92 LSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 + D + + + T N + + + L Sbjct: 58 MPGTDGLTATMDICSRPEMSTTRVLILTTFENNENVAKALRAGASGF---LGKDVGPEFL 114 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-----WGKDFELTGREVECLTWISEGK 201 L + D L + D + LT RE E + + GK Sbjct: 115 LSGIRTVAAGDSLLSPTATRTLITRFLATPDTDTPLAPPERLAALTEREREVMALAAHGK 174 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++I M K + R+ + A ++ +V Sbjct: 175 SNAEIADQLVVSPLTVRSHIQRAMTKLDVRDRAQLVVIAYQSGLV 219 >gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 230 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVE 192 ++ I ++L + + EI L + + + + +LT REVE Sbjct: 116 VLEIDEIGNPFLVLGVVDLSPDQKDMDEIKFRLVNNKTGEMTPFPLTEETNIKLTKREVE 175 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +++G S EI+ L IS +TVNN+ +I++K T AI YA + ++ Sbjct: 176 ILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYARKLGLL 229 >gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 215 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 9/219 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-----QKLDSIVSSDWPFDLV 87 + R+ ++ + ++ + G + D Q + +V D + Sbjct: 1 MIRVALVEDQTLVRQGLRSMLDLAGDMQVIGEAEDGVQATERLPELRPDVVLLDLRMPHL 60 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 + + ++ + L P L F + Y + ++ + + Sbjct: 61 DGLGVLQRLSAHGTL--PPTLVLTTFDDDELILECVQAGARGYLLKDVALPQLLQAIRTV 118 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 GR + + L +A + LT RE + L ++ G ++ EIA Sbjct: 119 AGGGRWLQPAVTQRV--LRGLEAFRPAAEPFTPCDAVTLTDRECDVLRLLAGGYSNREIA 176 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + TV +Y+++++ K + R+ A+ A+ ++ Sbjct: 177 GALRTTEGTVKSYVSNVLSKLGVRDRTRAVLKALELGVL 215 >gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 241 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL + + V LT RE E L ++ G + EIA L +S TV ++ Sbjct: 155 SLLRHFSSRAADGQSVPTADISVLTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVH 214 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K RS A+A A R+ ++ Sbjct: 215 RILLKLGLSDRSQAVAVAYRSGLI 238 >gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 222 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ +V D + + + + + P + F ++ + + + Sbjct: 44 ERTAADVVLMDVQMPHLDGIEATRRLTARD--DSPKVVVLTTFENDEYVMSAISAGASGF 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + + +I + L + M S ++T RE Sbjct: 102 LLKDVPPEELLAAIRTVHRGDAVIEARSTRK---LLQHVGPML-SDSAAPSLPEDMTPRE 157 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E L ++ G ++ EIA +S TV ++ ++ KT ++ R A+ YA + +V Sbjct: 158 IEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213 >gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 230 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 10/178 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + L + F + + Sbjct: 51 DVVLMDIRMPGTDGLTATRTISADPELAGVRIVMLTTFEVDEYVVQALRAGAAGFLGKGA 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTG 188 + + + + ++ GL+A + A D G+ LTG Sbjct: 111 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQA-PDADGDLGRSTAYSELLDALTG 167 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L ++ G ++D+IA L +S TV ++ M K + R+ + A + +V Sbjct: 168 REREVLVLVAGGHSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 225 >gi|325929180|ref|ZP_08190322.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325540465|gb|EGD12065.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L ++ G ++ +I L IS TV ++ +I+ K + R+ A+ A+R Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|297158191|gb|ADI07903.1| two-component system DNA-binding response regulator [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 10/158 (6%) Query: 92 LSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L RP L V + I G Y + T + + + Sbjct: 93 LRRSAALMAAADRPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDAIFRVSEG 152 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAV 208 + LA + + F S D + LT RE E L I+ G EIA Sbjct: 153 DAVFSP-------RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAK 205 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV +++++++RK R +A +V Sbjct: 206 QLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243 >gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2] gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1] Length = 160 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 LW +L A ++ V + LT RE E L W + GKT EI +IL I + TV Sbjct: 73 LWITSMLQATFGDLLAPRIVPES-NVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVK 131 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 +I + MRK + ++ A A ++ Sbjct: 132 FHIVNAMRKLNSSNKAEATMKAYAIGLL 159 >gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] Length = 531 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------- 184 + F V G++ + K ++ + L A M S Sbjct: 401 VPFFVRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSE 460 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE++ L + +G ++ EI+ L IS +TV N+I +I +K RS IA Sbjct: 461 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 514 >gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 8/161 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L + + + +R + V T ++ + + Sbjct: 70 LSTGSDIEGLEVCSELTRRFPQAGVLVLTTFLDDALVLEAIHRGAKGYVL----KDVDTT 125 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L R + RD A++ ++ LT RE + L ++ G ++ E Sbjct: 126 ALVSSIRAVARDE----SAFDPRSASVMMRTIRTAPEEPTLTDRETKVLELLARGMSNRE 181 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L IS TV ++ +IMRK + TR+GA+ A + ++ Sbjct: 182 IGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKLGLI 222 >gi|317128933|ref|YP_004095215.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473881|gb|ADU30484.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 708 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 17/176 (9%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 +Q + SI+ W + R +AL+EK ++ L ++ + Sbjct: 545 ISDQNILSILEGYWEA-VERKVALNEKSDILALISHYV-LHNENIESIRNLTHISESKRS 602 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + V +M+ I + +S +D +L+ Sbjct: 603 SFIQFISQVNITESEIMISSENKSPINMEE---------------RSPKSKITEDLKLSK 647 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE++ L + +G ++ +IA L IS +TV N++ I++K RS AIA + Sbjct: 648 RELDVLDLVLKGYSNSDIANTLFISDHTVKNHMTKILQKLDCTDRSQAIAKVYQMG 703 >gi|297561144|ref|YP_003680118.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845592|gb|ADH67612.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 6/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + I + L ++ L + Sbjct: 77 PRVIVLTTFDNDDYVWGALRAGAHGFLLKRTPPEDILAAIRLAHRGDTLLFPTALRHL-- 134 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A + LT RE + LT +++G T+ EIA L + TV +++ I Sbjct: 135 ----AATQPAAPTPAARAVATLTQRESQTLTLMAQGLTNAEIADRLFLGTETVKTHVSHI 190 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ A+ A + ++ Sbjct: 191 LTKLGVRDRTQAVIAAYDSGLI 212 >gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 211 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 ++ + + + LT RE E L + G+T+ +IA +LGIS TV ++ ++ K Sbjct: 134 VSSALAAARIDQQIEAPLTQREGEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKI 193 Query: 229 ATKTRSGAIAYAVRNNI 245 R+ A +AVR + Sbjct: 194 GVADRTQAAIWAVRAGL 210 >gi|227834277|ref|YP_002835984.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] gi|262183011|ref|ZP_06042432.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] gi|227455293|gb|ACP34046.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] Length = 206 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 16/171 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V +A + L P L + T + + Y Sbjct: 51 DVVVCDIQMPDVDGIAATR---RVRELDGPPVLILTTYDTQADILAAVEAGALGYLLKDA 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ R + + LLA A + L+ RE+E L Sbjct: 108 PEDTLHTAVLDTAAGKRTLAPEV---TNLLAERLAQ----------PETALSPRELEILQ 154 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S G ++ +IA L IS TV ++ + +K +TR+ A++ A ++ Sbjct: 155 ALSTGASNKQIAQRLFISEATVKTHLIHVYQKLGVETRTAAVSAARERKLI 205 >gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 552 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------- 184 + F V G++ + K ++ + L A M S Sbjct: 422 VPFFVRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSE 481 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE++ L + +G ++ EI+ L IS +TV N+I +I +K RS IA Sbjct: 482 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 535 >gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)] gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24] gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24] gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)] gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)] gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24] Length = 217 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L +++GKT+ E+A L +S TV +++ I+RK TR+ A+A A + Sbjct: 145 ELTPRETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRILRKLGAATRAQAVAIAYESG 204 Query: 245 IV 246 ++ Sbjct: 205 LL 206 >gi|329934362|ref|ZP_08284441.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329305958|gb|EGG49813.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 221 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 18/224 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ D L + + + V + + + + P ++ + Sbjct: 1 MTIRVLLADDQTLLRATFRILID---SCSDMEVVDEAADGARAVELTRAHRPDVVLMDIR 57 Query: 92 LSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + D + + L F T + + + G Sbjct: 58 MPGTDGLAATSEICADPALAATRILVLTTFQTDEYVARALRVGASGFLGKDVSAEALLEG 117 Query: 144 LMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + + ++ + LA +A D LT RE E ++EGK Sbjct: 118 IRTVAAGDALLSPAATRALITRFLATPEAEAVTGPDAGV-----LTAREREVTELVAEGK 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L +S TV ++ K ++R+ +A A R+ + Sbjct: 173 SDAEIAEQLFLSPLTVRTHVQRAKTKLDARSRAQLVAIAYRSGL 216 >gi|318061446|ref|ZP_07980167.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318077421|ref|ZP_07984753.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 229 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDE 205 LF R R +A+ ++ L+ RE E L ++ G ++ E Sbjct: 122 LFAAVRATADGRSVLAPAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSNRE 181 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S TV ++ + K R+ A+A I+ Sbjct: 182 IARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 222 >gi|254424867|ref|ZP_05038585.1| transcriptional regulator, LuxR family protein [Synechococcus sp. PCC 7335] gi|196192356|gb|EDX87320.1| transcriptional regulator, LuxR family protein [Synechococcus sp. PCC 7335] Length = 412 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + S K+ L+ RE E + +++G EI+ L IS TV + +++ K Sbjct: 336 SPQHNSSPQPLSKESPLSAREQEVIMLLAQGLRDREISKQLFISERTVKFHTRNMLGKLG 395 Query: 230 TKTRSGAIAYAVRNN 244 +TR+ A+ A + Sbjct: 396 VRTRTQAVFRATKQG 410 >gi|159897476|ref|YP_001543723.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890515|gb|ABX03595.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 799 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT I++GK++ EIA+ L +S TVNN++ +I RK TRS A A + Sbjct: 732 LTKREHELLTLIAQGKSNSEIALELVLSPFTVNNHLRAIYRKLGVSTRSAAAYIARERGL 791 Query: 246 V 246 + Sbjct: 792 L 792 >gi|329939465|ref|ZP_08288801.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301694|gb|EGG45588.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 8/165 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR L + + +P L F + + + + Sbjct: 56 VRMPKLDGVEATRRICAQPDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAA 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201 + + ++ L A M + + LT RE E + +++G Sbjct: 116 IRSVHSGDAVVAPSTTRR---LLDRFAPMLPDTNQRPRHEGLERLTEREREVMVLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 10/204 (4%) Query: 48 RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQR 104 + + E G F LV D ++ P ++ + + D + +R Sbjct: 22 GLRMMLEIAG-EGFTLVG-DAADGVAALCVIEELQPDVVLMDLRMPGMDGLEAITQIRER 79 Query: 105 PTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + + T E+ G+ C L + +G ++L+ + + Sbjct: 80 WPHIAIVILTTYNEDNLMLRGLRAGACGYLLKDTDRETLFHAIRAAARGDLLLQPEI--M 137 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + A + S + ELT RE E L ++ G+ S EIA LGIS TV +++ Sbjct: 138 ARILARTTDAPHSTPSRPQAE-ELTERECEVLEAVARGERSKEIASRLGISLRTVGSHLT 196 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 SI K +R+ A+A + ++ Sbjct: 197 SIYSKLGVDSRASAVATGIERGLL 220 >gi|291299547|ref|YP_003510825.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568767|gb|ADD41732.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 4/170 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + + + L + F + + Sbjct: 49 DVVLMDIRMPVLDGLEATRRIAADDRLAAVRVIILTTFDLDDYVYSALRAGAGGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + ++ +I LLA + + LT RE E L Sbjct: 109 EPAELIHAVRVVARGDALIAPTITRR--LLADFATQ--HRAPQPNPRLNALTERETEVLG 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+ G ++DEIA L +S T +++ IM K + R+ + A + I Sbjct: 165 LIAAGLSNDEIAAKLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESGI 214 >gi|254430340|ref|ZP_05044043.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] gi|197624793|gb|EDY37352.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] Length = 99 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 44/73 (60%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ ++ +L+ RE+E + ++EG T+ EIA L IS+ TV+N++++I KT K R Sbjct: 11 MGRELQQSQERDLSERELEIIALVAEGLTNQEIAGTLTISKRTVDNHVSNIFTKTGAKNR 70 Query: 234 SGAIAYAVRNNIV 246 + +A+ + + Sbjct: 71 VALLNWAMDHGKI 83 >gi|302546104|ref|ZP_07298446.1| transcriptional regulatory protein DegU [Streptomyces hygroscopicus ATCC 53653] gi|302463722|gb|EFL26815.1| transcriptional regulatory protein DegU [Streptomyces himastatinicus ATCC 53653] Length = 228 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ L E LA+ Sbjct: 96 HADVLEAVKSGATGYLLKSASTEELIDAVRRTAVGDAVFTPGLAGLV---LGEYRRLASE 152 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A V +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 153 PAPATADQPVAP----QLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 208 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 209 QLHNRVELVRYAIEAGL 225 >gi|256375685|ref|YP_003099345.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919988|gb|ACU35499.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 238 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ REVE L +++G+++ EI L +S TV ++++ I RK T R+ +A A Sbjct: 172 NTPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALA 231 Query: 241 VRNNIV 246 +R ++ Sbjct: 232 MRAGVI 237 >gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] Length = 376 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 2/153 (1%) Query: 96 DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + ++P L P + E+I + + + + Sbjct: 223 ENTILSSRKPIYLKNPKNYVKEEHIQLFNLSSIIFIPILCEDQLFGWLTFDQLGEEFDCT 282 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGIS 213 ++ L + + K+ LT RE L ++EG + +IA +L +S Sbjct: 283 KEELTLLEEVGKRLGLFLSRKGEKVEKNTVLHLTERESMILGLLAEGYDNKKIAGLLFLS 342 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV +Y++S+M K K R+ +A A R ++ Sbjct: 343 EHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 375 >gi|302553186|ref|ZP_07305528.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470804|gb|EFL33897.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + + D + + P F + + + + Sbjct: 55 DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLT 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + + ++ LL + + + ++ E LT RE E + +++G Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFAPMLPGTATQPQHQELERLTDREREVMVLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|269124386|ref|YP_003297756.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309344|gb|ACY95718.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 222 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 9/162 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLM 145 M E + R + + T + A + C + + + Sbjct: 59 GMDGLEATRRITADPRLENVRVVILTTFDLDDYVYAALRGGACGFLVKDTEPQELIRAVR 118 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + +I L+A + + + D LT RE E + ++ G ++D Sbjct: 119 VAARGDALISPSVTRR--LIAEFTGRVKAPAPDPRLNA---LTEREREVMRLVAAGLSND 173 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S T +++ IM K + RS + A + +V Sbjct: 174 EIAGRLVLSPATAKTHVSRIMSKLGVRDRSQLVVLAYESGMV 215 >gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L I++GK + EIA +L IS TV +++ +IM K R+ A+ AV+ Sbjct: 146 ELTSREIQVLQEIAKGKANKEIAAVLAISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRG 205 Query: 245 IV 246 I+ Sbjct: 206 II 207 >gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 + +++ + + + G+ + L GL Sbjct: 78 CAHVLVLSASDERDDVLEAIKAGATGYLVKSAQRSELVAAVRATGDGQAVFTPGL--AGL 135 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + +S LT RE E L +++G +S +IA L IS TV N++ + Sbjct: 136 VLGEYRRIARSPGEADAAVPTLTQRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAA 195 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RK R YA+ + + Sbjct: 196 LRKLQLGNRVELTRYAIEHGL 216 >gi|300863456|ref|ZP_07108411.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338519|emb|CBN53553.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 244 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GL 164 V D + L V G + I+ R+ Sbjct: 102 VLAAFAAGADSYCMKDVSFEKLVEAVVETNAGENWIDSSIARIVLARMNNPFKEAVNSAT 161 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ N + H LT RE E + I EG +++EI L IS TV ++ +I Sbjct: 162 ISTVSINGVEPEYSHLLMANPLTEREKEVIELIVEGCSNEEICKQLYISLGTVKTHVRNI 221 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ A A+R +V Sbjct: 222 LNKLSCDDRTQAAVRALRAGLV 243 >gi|239942209|ref|ZP_04694146.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988676|ref|ZP_04709340.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445663|ref|ZP_06585053.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348610|gb|EFE75514.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + D + + P F + + + A + Sbjct: 57 DVRMPRLDGVEATRRICAQQDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLA 116 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGK 201 + + ++ LL + + K +LT RE E + +++G Sbjct: 117 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSGEKEPKNKHVGKLTEREREVMLLVAQGL 174 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 175 SNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 219 >gi|239931733|ref|ZP_04688686.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440102|ref|ZP_06579492.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342997|gb|EFE69953.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 8/184 (4%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 L +EQ+ D +V D +A + L + F + Sbjct: 43 LAREQRAD-VVLMDIRMPGTDGLAATRMISADPALAAVRVVILTTFEVDDYVVQSLRAGA 101 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GK 182 + + + + + + ++ GL+A + A + + + Sbjct: 102 SGFLGKGSEPDELLNAIRIAAEGEALLSPAATK--GLIARFLAQEVAAGEADRDPARAER 159 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L ++ G ++DEIA L +S TV ++ M K + R+ + A Sbjct: 160 LESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYE 219 Query: 243 NNIV 246 + +V Sbjct: 220 SGLV 223 >gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 226 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110 +Y+ + ++ E I+ P ++ + + E D Y NV Q + Sbjct: 39 DYLEFRGYDMLTAANGVEGL--QILEETTPDLIICDVMMPEMDGYTFIQNVRQNSQISWI 96 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + I + Y F+ + + + R I L G Sbjct: 97 PVIFLSAKGQTCDRIEGLNQGADVYLVKPFEPEELVAQVESSLNQARRI----LSHSGAT 152 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + A S+ ELT E + ++++++G ++ EIA L +S+ T+ +++++++ Sbjct: 153 TSSMAFQVPSH-------VELTPTETKVVSFVAQGLSNREIAEKLNVSQRTIESHVSNML 205 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 KT+ R+ +A+ + +V Sbjct: 206 NKTSLNNRTELARWAMDSRLV 226 >gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 245 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 16/189 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V SD + L +K + L +F + + Y Sbjct: 59 QQMLPDVVISDVMMPRLDGYGLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDY 118 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177 FD + + + + + +L++ ++G +A QA S D Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKD 178 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 T RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 179 PVA---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235 Query: 238 AYAVRNNIV 246 YA+ + +V Sbjct: 236 RYALEHRLV 244 >gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 210 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 13/216 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R+ +D M AL + G +V + + +V++ P ++ + L Sbjct: 1 MIRVALVDDHPVVRAGMRALVD--GQDDLTVVG-EASDAHSAEQLVAAVRPDVVLMDLNL 57 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG- 151 R L P P+ + D L P Sbjct: 58 GRGPGGVEATARLRALPEP-----PQVLVLTTYDTEADIMSAIDAGASGYLLKDAPPDDL 112 Query: 152 -RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 R I E+ L A A + K LT REVE L ++ G+++ E+A L Sbjct: 113 FRAIRGTARGEVVLAPAVAARLVKR---AGSPGPVLTEREVEILGLLATGQSNRELAKRL 169 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV ++++ I K TR+ A+A A+ +I+ Sbjct: 170 FVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHII 205 >gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 236 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 12/151 (7%) Query: 108 LFCPVFHTLPENITPP-AGMDNRYCSLTFDVARIRIGLMLLFPKGR----IILRDRLWEI 162 + H + + + + Y + R+ + + +I R L + Sbjct: 85 ILILTMHDNKDAVMGAFSAGADSYSVKDVSIDRLMEAIQVTSEGNSWIDPVIARTVLQQA 144 Query: 163 GLL-------AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 L A N + + LT RE+E L I G+++ EIA L I+ Sbjct: 145 QNLPGENKDAATVTINAVEPEYKEFLSTCPLTERELEVLELIVGGRSNAEIAEKLYITVG 204 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ SI+ K R+ A A+R+ + Sbjct: 205 TVKTHVRSILNKLCADDRTQAAVRALRSGWI 235 >gi|297192611|ref|ZP_06910009.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151436|gb|EFH31165.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + + L Sbjct: 94 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGSDLVDSVFRVQDGDAVFSP-------RL 146 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 147 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 206 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 207 VLRKLQLSNRHELTRWATARRLV 229 >gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 231 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 81/215 (37%), Gaps = 22/215 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 A+ EY+ S F + +E ++ P ++ + + + D Y+ + Sbjct: 17 AVKEYLQESGFKVQTASNAREGWD--MMQHSIPDLVISDIMMPQVDGYHFLKQMRDDARF 74 Query: 108 LFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIR--IGLMLLFPKGRIILRDRLW 160 PV + +T + Y + FD + + +L+ + + Sbjct: 75 QALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLLVRHTVKTQVASEDT 134 Query: 161 EIGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWISEGKTSDEIAVIL 210 E +A + K D+ ++ +LT RE L ++EG + EIA L Sbjct: 135 ENMDIAKLAHEISKIKDLLSPRNAITQTPPPFKIDLTPREQSVLNLVAEGLMNKEIARRL 194 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S V Y++ + KT T +R+ + +A+ + + Sbjct: 195 ETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] Length = 248 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 17/232 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D A + + + M +T+ +G H+ LV + + + S+ D+P D V Sbjct: 10 DFCAVAGAIKDATALSDLMAEITKAMGFRHYALVHH-VDLKPAVRSVHIVDYPQDWVERF 68 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------------ 138 + + + ++I D + ++ Sbjct: 69 QARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIP 128 Query: 139 -RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELTGREVECL 194 + G ++ +L + L+ ++ A + LT R+ EC+ Sbjct: 129 GELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECV 188 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ GKT EI+ ILGI + TV ++ + R+ A+ + Sbjct: 189 ALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 240 >gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 213 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L+ A + + L+ RE+E LT ++ G T+ E A L IS TV ++ Sbjct: 126 SVLSPAVAGRLMGR-LRAPAEEPLSQRELEVLTLVARGSTNREAAAQLFISEATVKTHLL 184 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K R+ A+A A ++ Sbjct: 185 HVYAKLGVNDRAAAVAVAYDRGLL 208 >gi|315445195|ref|YP_004078074.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] gi|315263498|gb|ADU00240.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] Length = 519 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREV 191 + R+ L R+ R R + LA A + + + LT RE+ Sbjct: 402 AVEPRPYRVALSPAAAATRLRDRVREGHLDELAVDAVLSAAGHAARRVSARPGGLTPREI 461 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++ EIA LGIS T N++ K R GA +A+ + ++ Sbjct: 462 EVLCLVARGASNKEIAATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516 >gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G T+ +IA L +S TV N++ + +RK R+ + YA+ N Sbjct: 147 QLTERETEVLRLVARGLTAKQIAQRLVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENG 206 Query: 245 I 245 I Sbjct: 207 I 207 >gi|227549911|ref|ZP_03979960.1| possible nitrate/nitrite response regulator protein NarP [Corynebacterium lipophiloflavum DSM 44291] gi|227078007|gb|EEI15970.1| possible nitrate/nitrite response regulator protein NarP [Corynebacterium lipophiloflavum DSM 44291] Length = 215 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 18/151 (11%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + + + + L Sbjct: 71 KFLALSVSDAAEDVIALIRAGARGYVTKNIAGDELAEAIERVHGGDAYFSP-------RL 123 Query: 166 AAYQANMFKSYDVHWGKDFE-----------LTGREVECLTWISEGKTSDEIAVILGISR 214 A + + F S V + E LT RE+E L ++ G T EI L IS Sbjct: 124 AGFVLDAFASGGVVEDPEGEPVKVEGPLVDALTRRELEVLRLLARGYTYKEIGAQLFISV 183 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV + ++I+RKT T R +A + Sbjct: 184 KTVETHASNILRKTQTSNRHQLTRWAADRAL 214 >gi|256380987|ref|YP_003104647.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925290|gb|ACU40801.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G ++ EIA L +S TV ++ I+ K + R A+ A + Sbjct: 153 LTEREREVLVLIAKGMSNTEIARKLFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL 212 Query: 246 V 246 V Sbjct: 213 V 213 >gi|91774800|ref|YP_544556.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708787|gb|ABE48715.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 212 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 3/154 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L ++ R + V + + + Y + ++ L + + Sbjct: 62 GLETLRRFKAGSLRARFVVLTVSDAEDDLLEALRAGADGYLLKDMEPEQLCDSLKKIA-E 120 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G +++DRL E+ L LT RE E L ++++G ++ IA L Sbjct: 121 GVTVIQDRLTEV--LRQALQEQGSKPGPATPDQVSLTDREQEILQFLADGLSNKAIARKL 178 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 GIS TV ++ ++ K +R A +A R Sbjct: 179 GISDTTVKVHVKHLLSKLRLTSRLEAAVWAHRQK 212 >gi|229591752|ref|YP_002873871.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229363618|emb|CAY50939.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 89 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT E+E L W SEGKT EI+ I S TV ++ +I K R A+ A R Sbjct: 28 PLTPAELEILRWASEGKTVWEISQIRTTSEATVKFHLRNIYGKLEVSNRVQAMNEAARQG 87 Query: 245 I 245 + Sbjct: 88 L 88 >gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 13/133 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 L D S+ + G + + L+ RL E Sbjct: 92 LAALRAGARGFLTKDADAESIARALRSAAAGQSTVDGE----LQRRLVEAAA-------- 139 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +S + LT RE+E L I+ G ++ EIA L +S TV ++ + K + Sbjct: 140 -RSAPPRVKEVEGLTARELEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRD 198 Query: 233 RSGAIAYAVRNNI 245 R+ A+A+A R I Sbjct: 199 RAQAVAFAYRAGI 211 >gi|302536340|ref|ZP_07288682.1| two-component system DNA-binding response regulator [Streptomyces sp. C] gi|302445235|gb|EFL17051.1| two-component system DNA-binding response regulator [Streptomyces sp. C] Length = 231 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 96 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSP-------RL 148 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231 >gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of two-component regulatory systems; Method: conceptual translation supplied by author [Staphylococcus carnosus] Length = 185 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%) Query: 78 VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV----------FHTLPENITPP 123 V P L+ +++ + +++ + + FH L Sbjct: 10 VMQHQPDVLIMDLSMPPGESGLIATSKIVESFPDTKILILTMYDDEEYLFHVLRNGAKGY 69 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + L V + G + PK L+ + N + + Sbjct: 70 ILKNAPDEQLISAVRTVYRGDTYIDPK---------MTTSLVNEFVNNTGQDANSTNDPF 120 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L I++G + EIA L +S TV + IM+K K++ + YA++ Sbjct: 121 RILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKK 180 Query: 244 NIV 246 ++ Sbjct: 181 KLL 183 >gi|319949743|ref|ZP_08023770.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436589|gb|EFV91682.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 226 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 4/144 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 PT L V + I Y + T + + + G + RL L Sbjct: 83 PTFLALSVSDAAEDVIAVIRAGARGYVTKTITGDDLADAVRRVA-DGDAVFSPRLAGFVL 141 Query: 165 LAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 A +A + VH + LT RE E L ++ G T EIA L IS TV + Sbjct: 142 DAFARAAPGPEERGEPVHDPEVDSLTPREKEVLRLLARGYTYREIAEELFISVKTVETHA 201 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 ++++RKT R +A ++ Sbjct: 202 SNVLRKTQQSNRHALTRWAQSRHL 225 >gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 217 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 22/180 (12%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAGMDNRY 130 +V D ++ +A + + + R L VF L D Sbjct: 51 DVVLMDLHMPVLDGIAATRRLRVEQPGVRVLALTTFDDDEDVFAALRAGALGYLLKDVSA 110 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FEL 186 L V G +L P + A A + D + L Sbjct: 111 DRLVEAVQAAARGESVLQPS-------------VAAKVVARFAQLDDAPRSRPQPLVVPL 157 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE++ L +++G+++ EIA L ++ TV N++ +++ K + R+ A A +++ Sbjct: 158 SDRELDVLRLLADGRSNREIATALFLAEGTVKNHVTNVLGKLGARDRTQAALRARALDLL 217 >gi|226365940|ref|YP_002783723.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244430|dbj|BAH54778.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 220 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + P + + + + + L Sbjct: 50 DVVLMDVRMPEMNGLDAARVIL-SAGFDPPVRVLMLTTFDVDDYVYEALSIGASGFMLKD 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + + G +L + L A + + LT RE E L Sbjct: 109 APAEELIRAVRVVADGEALLAPTVTR--RLIADVTSRRSTARRKPAALSALTPREREVLE 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV ++ ++ K + R+ A+ A + +V Sbjct: 167 LIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217 >gi|254383084|ref|ZP_04998438.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] gi|194341983|gb|EDX22949.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] Length = 235 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 100 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSP-------RL 152 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 153 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 212 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 213 VLRKLQLSNRHELTRWATARRLV 235 >gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas subvibrioides ATCC 15264] Length = 208 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 9/159 (5%) Query: 85 DLVRCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 D+ ++ + +L+R PT + H PE + L + Sbjct: 55 DIRFGPGMNGLEAAGRILERAPTRILLLTLHDTPEYVRSALAAGATGYVLKDAGREELLH 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + GR L L M + LT RE E L ++ G T+ Sbjct: 115 AIRAVGAGRSALPGDLLRKA--------MAPTVGPRPDDLDRLTPREREVLESVARGLTN 166 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 EIA LGI TV ++ ++ K R+ A +A R Sbjct: 167 KEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAAVFAAR 205 >gi|297159648|gb|ADI09360.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 11/175 (6%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCS 132 P ++ + + D ++ L F T + + Sbjct: 47 HHPDVVLMDIRMPGTDGLAATTAVCSDPDLSATRVLILTTFETEEYVARALRAGASGFLG 106 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREV 191 + + + ++ L L+ + A + + LT RE Sbjct: 107 KDVTADALLTAIRTVASGDALLSP--LATRALITRFLATPAPGNHLAPPERLAVLTARER 164 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + +EG ++ EIA L +S TV ++I M K + R+ + A ++ +V Sbjct: 165 EVMALAAEGMSNHEIAERLVVSPLTVRSHIHRAMTKLHARDRAQLVVVAYQSGLV 219 >gi|290961885|ref|YP_003493067.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651411|emb|CBG74533.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 6/219 (2%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 P R + + +S + + + VG++ DL E D+++ D + Sbjct: 10 PLRVVVADDQASVREGLSLMLDLLPDIDVVGSAADGRQVLDLVAELSPDAVLL-DLHMPV 68 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 + + + + + P + + A LT D R+ I L Sbjct: 69 MDGIEATRRLTA----EHPEVAIVVLTTYADDRSVLDALRAGARSYLTKDADRMHIAATL 124 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + + + LLAA S LT RE E LT I++G + EI Sbjct: 125 HSAAAGLSVLHPQVQATLLAAASGTAV-SDRPARKLPDGLTRREAEILTLIAQGLNNAEI 183 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A L +S NTV +I + KT ++ R+ A YA R+ + Sbjct: 184 ADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL 222 >gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi] Length = 250 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 28/230 (12%) Query: 43 VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102 + + + G + + +++ D ++ S++P + V + V+ Sbjct: 13 STIQSYLNRKLKSYGDPKY--AYLIMNKKKPTDVVIISNYPTEWVDIYRNNNYQHIDPVI 70 Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLM---------------- 145 P I+ + S +D+ ++ Sbjct: 71 LTAINKISPFSWDDDLVISSKLKFSRIFNLSKDYDIVNGYTFVLHSPGNNLAALSFMIEE 130 Query: 146 LLFPKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I+++ ++ +L + Y+ + + + RE E L W Sbjct: 131 HRSEELEEIIQNNKDKLQMLLISAHEKLTSLYREMSRNRNNSKSQEADLFSQRENEILHW 190 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S GKT EIA+ILGI+ +TV +I ++++K AI V N++ Sbjct: 191 ASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|330947744|gb|EGH48203.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 120 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 139 RIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 + IG + +++ L + LL A S + G D L+ RE+ L I Sbjct: 12 KALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLI 70 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 71 AQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 119 >gi|297158565|gb|ADI08277.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 7/163 (4%) Query: 89 CMALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + + D E C V F + + + + Sbjct: 55 DIRMPGTDGIEATGTICQETDCRVIMLTTFDSDEYVHDALHAGASGFLLKDVRRDDLVHA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ ++ L+A + ++ + LT RE E L + G ++ Sbjct: 115 VRVVTAGDSLLAPSVARR--LVADFVRRPRETAAPRSDRLAVLTARERETLQLLGRGLSN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S +TV ++++++ K + R A+ A +V Sbjct: 173 AEIAAELVVSEHTVKTHVSNVLTKLGLRDRIQAVICAYETGLV 215 >gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] Length = 201 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 43/85 (50%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 I + + + + K L+ RE E +TW++ G T+ EIA +L +S +TV + Sbjct: 109 IQQIQESEQPEVELIESDESKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHR 168 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +I K + SG YA+ NN++ Sbjct: 169 RNIAAKLDIHSPSGLTIYALMNNLI 193 >gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 232 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 18/188 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMD 127 I+ P ++ + + E D Y + P PV + I Sbjct: 43 RILEKITPDVIISDIMMPEVDGYQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGC 102 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGR-----IILRDRLWEIG-----LLAAYQANMFKSYD 177 + Y FD + + L + + +L EI L Sbjct: 103 DAYLPKPFDPEELEAIVKNLLERRKTNEKTATDSAKLEEIAQEIRELKQQLGQQQNTLTT 162 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 163 TPSPIKIDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELV 222 Query: 238 AYAVRNNI 245 +A+++ + Sbjct: 223 RFALKHGL 230 >gi|163848683|ref|YP_001636727.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|163669972|gb|ABY36338.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] Length = 890 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 9/129 (6%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 G N Y + + L+ RL +A A K V Sbjct: 769 GRALEIGKANGYVRIFLEEGEEMRHLLTQIH--------RLRRDDFVAELLAAFGKPAQV 820 Query: 179 HWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 E LT RE+E L I+EG ++ EIA L +S TV ++ I K R A Sbjct: 821 VQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAA 880 Query: 238 AYAVRNNIV 246 A ++ Sbjct: 881 GMARELGLL 889 >gi|331696706|ref|YP_004332945.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951395|gb|AEA25092.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 238 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ REVE L +++G+++ EI L +S TV ++++ I RK T R+ +A A Sbjct: 172 NTPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALA 231 Query: 241 VRNNIV 246 +R ++ Sbjct: 232 MRAGVI 237 >gi|302547311|ref|ZP_07299653.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464929|gb|EFL28022.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 220 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V+ D L+ + + V P + F + + Sbjct: 49 DVVAMDVRMPLMDGIEATRTVLR-TVPDPPKIIVVTTFENDEYVYGALRAGADGFLLKRA 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + L+ ++ + ++ A+Y N + + LT RE + L Sbjct: 108 RPAEIVHAVRLVAEGDSLLFPAAVRQLA--ASYGENDGSAEGRAALERAALTEREGDVLR 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++++S++ K + R+ A+ A + V Sbjct: 166 LVARGLSNAEIAARLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGFV 216 >gi|256395013|ref|YP_003116577.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361239|gb|ACU74736.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 441 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA L ++ TV +++ ++ K + R+ A+ A + + Sbjct: 367 LTPRETEVLLLIARGLSNPEIAAELVVTDETVKTHVSRVLTKLGLRDRTQAVVAAYESGL 426 Query: 246 V 246 V Sbjct: 427 V 427 >gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R + L E L A A + V EL+GRE L ++ G T+ E A L Sbjct: 114 RAVRAAALGETVLSPAVAARLLNR--VRTPAPAELSGRERTVLALVARGSTNKEAAAALF 171 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++A I K R+ A+A A ++ Sbjct: 172 ISETTVKTHLAHIYTKLGVSDRASAVAVAYSRGLL 206 >gi|145224867|ref|YP_001135545.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] gi|145217353|gb|ABP46757.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] Length = 519 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREV 191 + R+ L R+ R R + LA A + + + LT RE+ Sbjct: 402 AVEPRPYRVALSPAAAATRLRDRVREGHLDELAVDAVLSAAGHAARRVSARPGGLTPREI 461 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++ EIA LGIS T N++ K R GA +A+ + ++ Sbjct: 462 EVLCLVARGASNKEIAATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516 >gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae] Length = 921 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 25/194 (12%) Query: 59 SHFLLVRWDLFQEQKLDSI----VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPV 112 + LL QE + D + + + W L + + + + E + Sbjct: 746 ACVLLAEMVSDQESRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEQQHLTGL 805 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + P N T + + G+ + R + G Sbjct: 806 FLDAGDTLQPLLAGMNE----TSSACKEKGGVHEPWADKRAPADGTPFNSG--------- 852 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D+ EL+ RE + L I+EG+ + EIA L IS TV +I +I K + Sbjct: 853 --SPDIPG----ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNS 906 Query: 233 RSGAIAYAVRNNIV 246 R+ A++ A+ ++ Sbjct: 907 RTQAMSRALEMKLL 920 >gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae NTUH-K2044] gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 921 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE++ L I+EG+ + EIA L IS TV +I +I K +R+ A++ A+ Sbjct: 859 ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918 Query: 245 IV 246 ++ Sbjct: 919 LL 920 >gi|171912623|ref|ZP_02928093.1| response regulator receiver protein [Verrucomicrobium spinosum DSM 4136] Length = 257 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 31/60 (51%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L WISEGKT+ + A IL IS TV ++ I K + R A A+ Sbjct: 190 LGLTPREQEVLYWISEGKTNADTATILNISPGTVRVHLERIYPKLGVENRMSASRIALEK 249 >gi|126665815|ref|ZP_01736796.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Marinobacter sp. ELB17] gi|126629749|gb|EBA00366.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Marinobacter sp. ELB17] Length = 219 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 16/175 (9%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPAGMDNRY 130 ++ D V + + + +N+ R ++ V L D Sbjct: 53 DLILMDLNMPDVSGIEALRQLRAHNISSRIIMFTVSDQQDDVVEALRAGADGYLLKDMEP 112 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + + +G +++ + +L D L KS LT RE Sbjct: 113 EDMIKQLHQAAVGKLVISERLTSLLADALRNN-----------KSQQPARPDFDSLTPRE 161 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I+EG ++ I L IS TV ++ +++K ++R +AV + Sbjct: 162 KDILNLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216 >gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas entomophila L48] Length = 235 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 13/228 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVR 88 + ++ + ++ +G F+L + +++ ++ I V DW D +R Sbjct: 8 QAVQQIEQATTLALIQSAVRSVARPLGYDRFVLFSANAARDEVVERIHWVEGDWFGDGLR 67 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARI 140 + ++ V + P F + E P G + Sbjct: 68 -VDAQTYIRHCPVNRHLLTAREPFFWSKREGEGGERYHVVRAPVGTGVHGLQVPVFGPAG 126 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFE-LTGREVECLTWIS 198 G M L + LLA + + + G++ L+ RE + L W + Sbjct: 127 LEGAMSLGGLHIDASPATRMCLALLANAAFHAARRLLEAPVGQEVGVLSERERQVLAWTA 186 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G+ +IA LG+S TV N++ + R+ T + AI A+ + ++ Sbjct: 187 AGQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGVL 234 >gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0101] Length = 79 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE+E + +++G T+ EI L IS+ TV+N+++++ KT K R + +A+ + Sbjct: 1 MDLSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDH 60 Query: 244 NIV 246 + Sbjct: 61 GKI 63 >gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 224 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 4/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L + Sbjct: 91 VYQALRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVL---- 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G ELT RE E L ++ G ++ EIA L ++ +TV +++ I+ K + Sbjct: 147 RGPAPPRTGGAYGELTERETEVLVHVACGLSNQEIAAKLYVAESTVKTHVSRILVKLGLR 206 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A N +V Sbjct: 207 DRTQAAVFAYENRLV 221 >gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein [Mycobacterium avium 104] gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104] Length = 221 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 14/189 (7%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP----TELFCPVFHTLPENITPPAGM 126 E + ++D R + D +Q P + V P + Sbjct: 29 ESGFAVVATADGVATAQRRAGVVRPDVVVMDMQLPDGDGAQATAAVLAVSPSSRVLVLSA 88 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRD----------RLWEIGLLAAYQANMFKSY 176 + + V G ++ + + + L + Sbjct: 89 SDERDDVLQAVKAGAAGYLVKSASKAELAQAVTDTAAGRAVFTPSLAGLVLGEYRRIAQS 148 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE E L ++++G ++ +IA L +S TV N++ + RK R Sbjct: 149 KDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVEL 208 Query: 237 IAYAVRNNI 245 YA+ + + Sbjct: 209 ARYAIEHGL 217 >gi|222526625|ref|YP_002571096.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450504|gb|ACM54770.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 878 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 9/129 (6%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 G N Y + + L+ RL +A A K V Sbjct: 757 GRALEIGKANGYVRIFLEEGEEMRHLLTQIH--------RLRRDDFVAELLAAFGKPAQV 808 Query: 179 HWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 E LT RE+E L I+EG ++ EIA L +S TV ++ I K R A Sbjct: 809 VQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAA 868 Query: 238 AYAVRNNIV 246 A ++ Sbjct: 869 GMARELGLL 877 >gi|5051409|emb|CAB44989.1| NarL protein [Pseudomonas stutzeri] Length = 218 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + G M L P+ +L + + Sbjct: 95 VLEALRNGADGYLLKDMDAEQLIEQIRIAATGRMALSPELTQVLAEAIR----------- 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE E L I++G+++ IA LGI+ TV ++ +++ K + Sbjct: 144 -VRPKPSGQVQFSHLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLR 202 Query: 232 TRSGAIAYAVRN 243 +R A + + N Sbjct: 203 SRVEAAVWVLEN 214 >gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 245 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 22/216 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---E 107 A+ Y+ S F ++ Q+ ++S+ P ++ + + D Y + Q Sbjct: 30 AVQAYLEDSGFEVIPAANAQQAL--QLLSTTQPQLIISDIMMPGMDGYQFLAQVRKLDPY 87 Query: 108 LFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---- 158 PV + +T + Y FD + + L + R Sbjct: 88 SHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIERSRAASPSEVVAR 147 Query: 159 --------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 L E L + + ELT RE + L ++EG + EIA L Sbjct: 148 ELASIRALLSERTLPPTIPSQPPTPTPLPPPIKVELTPREQQVLEKVAEGLMNKEIAKQL 207 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S V Y+ ++ KT T +R+ + YA+ ++ Sbjct: 208 QTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 243 >gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 220 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + L + + G G LR+ L + ++ + + Sbjct: 99 GASGYCQKGIEAELLILALRSVAAGASWWDSTGTSSLREALTNVPFNSSVELSEIDLPQ- 157 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE+E L I+ G T+ EIA L I+ TV ++ +I++K + R+ A Sbjct: 158 ------PLTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAV 211 Query: 239 YAVRNNIV 246 A++ +V Sbjct: 212 LAIQKGLV 219 >gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 232 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 14/224 (6%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVR--WDLFQ--EQKLDSIVSSDWPFDLVRCMA 91 ++ +D S + A EY G + D +Q E+ + ++ SD V Sbjct: 7 ILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEKTIPDVIISDIMMPEVDGYE 66 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 EK + + + +F + I + Y FD + + L + Sbjct: 67 FLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLLERR 126 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWISEGK 201 + + + L Q + ++ +LT RE L ++EG Sbjct: 127 KTNEKTATDSVKLEEIAQEIRELKQQLGQQQNTLITTPPPIKIDLTPREQSVLDLVAEGL 186 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L S V Y++ + KT T +R+ + +A+++ + Sbjct: 187 MNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230 >gi|254471678|ref|ZP_05085079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] gi|211958880|gb|EEA94079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] Length = 233 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 13/210 (6%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-DWPFDL---VRCMALSEKDKYY- 99 + L GASH L+ + + +DS+V WP + V LS D Sbjct: 27 VESYLRRL----GASHILITGLPM-PNRTIDSLVHRFRWPDERNGGVERTTLSAGDSALM 81 Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-- 157 L + V T N A + + V + ++ G I + Sbjct: 82 LGLSGNRPVVWSVSGTDTGNSELFAAIGEGARVMVIPVDALHPFQAMVVGAGHQIAAEPY 141 Query: 158 RLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 L + ++ + V + +L+ RE L + GKT+ EIA +L IS+ T Sbjct: 142 DLASLEIVCSAAFRRLFELGVISDQRPGDLSARERRVLELTALGKTAHEIAELLEISQRT 201 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V+ ++ + K ++ + A+R + Sbjct: 202 VHAHLQNASAKLNASNKTHTVVEALRYGQI 231 >gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 277 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+QA + D + Sbjct: 153 TVPLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHH 212 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 213 IPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 272 Query: 244 NIV 246 ++ Sbjct: 273 RLL 275 >gi|297192920|ref|ZP_06910318.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151558|gb|EFH31236.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 9/165 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + D + E P F + + + + Sbjct: 55 DVRMPRLDGVEATRRICAEPNAPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLG 114 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGK 201 + + ++ LL + + + K+ LT RE E + +++G Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSAGPEPRQKELARLTEREREVMMLVAQGL 172 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 173 SNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 4/144 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 P + F ++ + + + + + + +I + Sbjct: 74 DSPKVVVLTTFENDEYVMSAISAGASGFLLKDVPPEELLDAIRTVHRGDAVIEARSTRK- 132 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L + M S ++T RE+E L ++ G ++ EIA +S TV ++ Sbjct: 133 --LLQHVGPML-SDSAAPSLPEDMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVG 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ KT ++ R A+ YA + +V Sbjct: 190 RVLSKTGSRDRVQAVVYAFQVGLV 213 >gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 220 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQANMFK 174 + + + L + + G P +I+L++ E + Sbjct: 97 IRAGASGYLLKGSGLSDLVTAIREVAGGNAFFSPTVAKILLQESRGE------------R 144 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S LT RE E LT + EGK+S EIA ILG+S T+ + IM K + Sbjct: 145 SVKEAPDPADSLTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVA 204 Query: 235 GAIAYAVRNNIV 246 G + A+R +V Sbjct: 205 GLVRQAIRIGLV 216 >gi|75909280|ref|YP_323576.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703005|gb|ABA22681.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + G + IA L IS +TV +++SI +K A TR+ A+ VR + Sbjct: 147 LTPREIEVLQMLGSGLGNKAIAQSLHISDHTVKFHVSSIFQKLAVSTRTEAVTVGVRLGL 206 Query: 246 V 246 + Sbjct: 207 I 207 >gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099] gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099] Length = 211 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D H + L+ RE E L ++EG + IA L IS +T ++A+I+ K R+ A Sbjct: 141 DEHAARP-ALSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDA 199 Query: 237 IAYAVRNNIV 246 IA A+R +V Sbjct: 200 IAIAMRQGLV 209 >gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] Length = 215 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 13/134 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D +L + + G ++L IL RL E Sbjct: 94 VVSALKRGADGYLLKDMEPEALLKALHQAAAGQIVLSEALTPILVARLRE---------- 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S +LT RE + L IS+G T+ IA L IS +TV ++ +++K K Sbjct: 144 ---SQPAQTRDISQLTRRERDILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKINLK 200 Query: 232 TRSGAIAYAVRNNI 245 +R A +A++N + Sbjct: 201 SRLEAAVWALQNGL 214 >gi|298244586|ref|ZP_06968392.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552067|gb|EFH85932.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 523 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 163 GLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 L+A+ QA ++ K + + +LT RE+E + +++G+ + +IA L IS+ TV +++ Sbjct: 439 ALVASLQAGDVGKKAVLKRSQATDLTQREIEVVRLLTQGQNTPQIARTLSISKKTVEHHL 498 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A I K R+ A+AYAV+ N+V Sbjct: 499 AHIYTKFGVSCRTAAVAYAVQQNLV 523 >gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R I E + A M S + + ELT RE+ L ++ G ++ +I L Sbjct: 122 RAIRAVARGESAFDSRSAAAMVHSMNNRSSEP-ELTERELGVLRLLAAGSSNRQIGGQLY 180 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS T ++ +IMRK TR+ A+ A + ++ Sbjct: 181 ISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 215 >gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 209 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L I+EGKT+ +I+ L I+ +TV ++ I+ K R+ AI AV I Sbjct: 147 LSTREQEVLQLIAEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIVQAVNQGI 206 Query: 246 V 246 V Sbjct: 207 V 207 >gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ L I G ++ EIA L I+R TV ++ I+R+ R+ A+ AV+ I Sbjct: 163 LSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRGI 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|94266341|ref|ZP_01290042.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93453055|gb|EAT03537.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 43/112 (38%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L DV + M I I L + + LT RE E Sbjct: 102 LQHDVDGYLLKTMPALKLVEAISDALTGAIVLPTGLKRQTPAPLQPSPENQYGLTPRERE 161 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L W+SEGK++ EI VI IS NTV +++ +M K R AV + Sbjct: 162 ILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213 >gi|291298992|ref|YP_003510270.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568212|gb|ADD41177.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 203 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A Y+ + S + +LT RE + L ++GK+++ I L +S +T+ ++ + Sbjct: 127 AYYRGDQLPSINGK-----QLTVREYQILNCAAQGKSNEHIGRELFVSEHTIKTHLRRLF 181 Query: 226 RKTATKTRSGAIAYAVRNN 244 K R+ A+A A R Sbjct: 182 DKIGAANRAHAVAIAFRQG 200 >gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 9/162 (5%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + R + E ++ +L V+ L + D L V + G Sbjct: 67 EATRRITSPEGSTVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVASGD 126 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 LL P L+ + + +LT RE E LT I+ G ++ Sbjct: 127 ALLSPNITK---------RLIVEFSRTAGAPRAPLKERVGDLTERETEVLTLIASGLSNA 177 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ TV ++ I+ K + R+ A +A + +V Sbjct: 178 EIARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219 >gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 592 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T V D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTVPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V Q +D + P ++ + + + D + Q+ + +F T Sbjct: 407 --VVGLAENGNQAID-LCGRLQPHVILMDLDMQQMDGVEATKKIKQQWPHIRILIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTKQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A] Length = 91 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 43/74 (58%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + ++ L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 1 MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKN 60 Query: 233 RSGAIAYAVRNNIV 246 R + +A+ + + Sbjct: 61 RVALLNWAMDHGKI 74 >gi|300790034|ref|YP_003770325.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799548|gb|ADJ49923.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL------FCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + D + EL F G + + Sbjct: 49 PDLVLMDVRMPVLDGVAATARICAELPDVRVLIITTFDLDEYAYAALRGGASGFLVKDAP 108 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + + ++ LL Y A+ + + + LT RE + L Sbjct: 109 SEEMLVAIRGVLRGDSMVSPSVTRR--LLDRYLAD--ERDPMDIARLGVLTEREKDVLGL 164 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L I TV ++ ++ K + R A+ +A + +V Sbjct: 165 IARGLSNSEIAAKLYIGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV 214 >gi|300785587|ref|YP_003765878.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795101|gb|ADJ45476.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 225 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 7/173 (4%) Query: 77 IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS- 132 +V P ++ + + D + V T ++ + + Sbjct: 53 LVEQHAPDVVLMDLRMPGVDGIEATRRIHDHHPATKIVVLTTYSDDTSILDALRAGALGY 112 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 LT D R I + + D LLAA + LT RE E Sbjct: 113 LTKDAGRDHIAQAIRTAAAGQAVLDPTIHARLLAATAHH---PDTPPSAPPDGLTTRETE 169 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT ++ G ++ EIA L +S T+ I I K R+ A+ YA ++++ Sbjct: 170 VLTQLAAGHSNTEIARQLFVSETTIKTRINHIYAKIGAADRAQAVRYAYQHHL 222 >gi|297191756|ref|ZP_06909154.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151051|gb|EDY65636.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 231 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 M E + + + + F + + + + + ++ Sbjct: 56 RMDGIEACREISTVSACRTVMLTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVA 115 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 ++ + D G+ LT RE E L + G ++ EIA Sbjct: 116 RGDSLLAPSVARRLIEEYTRAVPRVPQPD---GRLESLTTRERETLLLLGRGLSNAEIAA 172 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +TV ++ +++ K A + R A+ A + ++ Sbjct: 173 ELVVSEHTVKTHVGNVLAKLALRDRIQAVICAYESGLI 210 >gi|116671431|ref|YP_832364.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116611540|gb|ABK04264.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 545 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L ++ GK + IA L +S TV +I++I K ++R A YA + Sbjct: 483 PLTPREIEVLRLVAAGKANRVIAGELYLSEKTVARHISNIFLKLGLRSRVAATRYAFEHG 542 Query: 245 I 245 + Sbjct: 543 L 543 >gi|325290865|ref|YP_004267046.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966266|gb|ADY57045.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 212 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 D +L+ RE E + +S+G ++ +I L I+ +TV N++ +I+ K + R +A+A Sbjct: 145 SSDNKLSEREKEVVQLVSQGLSNKDIGEKLHITESTVKNHLRNILAKLHLRNRVQLVAFA 204 Query: 241 VRNN 244 +N Sbjct: 205 YKNG 208 >gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 215 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+E L ++EG ++ IA LGI+ TV ++ ++M K R+ A+ Sbjct: 143 PPLSPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAV 202 Query: 238 AYAVRNNI 245 A A R + Sbjct: 203 ALAWREGL 210 >gi|319442313|ref|ZP_07991469.1| putative two component response regulator [Corynebacterium variabile DSM 44702] Length = 213 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P +I R G A + + LT RE+E L +++G+++ Sbjct: 111 LLKDAPPAELISAVRAAATGATAMSGSVATRLMHREEEPANALTSRELEVLQLVADGRSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI L +S TV +++ I K ++R+ A+A A ++ Sbjct: 171 REIGATLFLSEATVKSHLVHINTKLGVRSRTSAVAAAREAGML 213 >gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str. NATL1A] gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. NATL1A] Length = 90 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 43/74 (58%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + ++ L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K Sbjct: 1 MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKN 60 Query: 233 RSGAIAYAVRNNIV 246 R + +A+ + + Sbjct: 61 RVALLNWAMDHGKI 74 >gi|78062060|ref|YP_371968.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77969945|gb|ABB11324.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 889 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 7/154 (4%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG-----LML 146 E K + L H L + G V +L Sbjct: 733 AGELLKAALAITPARPLLSVKLHVLQALVQHRQGHTRLALRTLQGVRETASAGGCRRALL 792 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + L D+ + + QA+ +S W L+ RE E L + G ++ EI Sbjct: 793 DEGAELVALLDQAPDAEMPHTAQASEQRSPTAAWYG--ALSQREQEILRLLCSGASNREI 850 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + L +S NTV ++ ++ K K R+ AI A Sbjct: 851 SEKLFLSENTVKFHLKNVYLKLDVKNRAQAILKA 884 >gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 233 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 18/181 (9%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLT 134 P ++ + + E D Y + P PV + I + Y Sbjct: 51 PDVIISDIMMPEVDGYQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKP 110 Query: 135 FDVARIRIGLMLLFPKGRI-----ILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDF 184 FD + + L + ++ +L EI L Sbjct: 111 FDPEELEAIVNNLLERRKVNGKAGSDSAKLEEIAQEIRELKEQLGQQQNNLTTTPPPIKI 170 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + +A+++ Sbjct: 171 DLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHG 230 Query: 245 I 245 + Sbjct: 231 L 231 >gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 205 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 20/140 (14%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 + + + D +L V G L P+ +L +R+ Sbjct: 86 DTQSDIVSAVEAGALGYLLKDAPEQALHDAVLATAAGKRTLAPEVAALLAERITRP---- 141 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + L+ RE+E L ++ GK++ E+A L IS TV ++ I + Sbjct: 142 ----------------EVALSSRELEILEALATGKSNKELAQRLFISEATVKTHLIHIYQ 185 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K TR+ A+ A ++ Sbjct: 186 KLGVDTRTAAVTVARERKLI 205 >gi|134098945|ref|YP_001104606.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133911568|emb|CAM01681.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R I E + A M S + + ELT RE+ L ++ G ++ +I L Sbjct: 134 RAIRAVARGESAFDSRSAAAMVHSMNNRSSEP-ELTERELGVLRLLAAGSSNRQIGGQLY 192 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS T ++ +IMRK TR+ A+ A + ++ Sbjct: 193 ISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 227 >gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 259 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G TS EI L IS TVN +I +I RK +TR+ A+ +A + Sbjct: 199 LSTREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 258 >gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143 +R L + ++ V T + + + + ++ Sbjct: 59 IRMPELGGIQATGRIAVDFPQVKVLVLTTFDLDEHVYDALRAGASGFLLKDASADQLAEA 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ ++ L+A + + ELT RE E L I++G ++ Sbjct: 119 VRVVAAGDALLAPGITRR--LIAEFSRLDTTPRAPLKVRVGELTERETEVLALIAQGMSN 176 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ TV ++ I+ K + + R+ A +A + +V Sbjct: 177 AEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESGLV 219 >gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 215 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 78/197 (39%), Gaps = 16/197 (8%) Query: 54 EYVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107 +Y+ + ++ + +E +++ ++ D + L + + + Sbjct: 27 DYLEFRGYQVITAENGREALELLEEQIPDLIICDVMMPQMNGYNLVQHIRENLATEWVPV 86 Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 LF + + + + Y F+ + + + L+ Sbjct: 87 LFLSAKGQIQDRVKGLNTGADVYIVKPFEPEELVAQVESSLKQASR----------LIKH 136 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + ++ + ++ ELT RE++ + +++G + +IA I+ +S+ T+ +++++++ K Sbjct: 137 HNSSFSDRPTIKVRRNVELTPRELKVVKLVAQGMANRDIAEIMEVSQRTIESHVSNMLGK 196 Query: 228 TATKTRSGAIAYAVRNN 244 T R+ +A+ + Sbjct: 197 TGLHNRTELARWAIESK 213 >gi|328884518|emb|CCA57757.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 236 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + L Sbjct: 101 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP-------RL 153 Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F S D + LT RE E L I+ G EIA L IS TV +++++ Sbjct: 154 AGFVLDAFASTDAPPVDEDMDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSA 213 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK R +A +V Sbjct: 214 VLRKLQLSNRHELTRWATARRLV 236 >gi|307327120|ref|ZP_07606309.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887201|gb|EFN18198.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 236 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P L ++ Sbjct: 90 VYEALHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRATA------- 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D LT RE E L ++ G ++ EIA L +S +TV ++ +++ K + Sbjct: 143 RPRRPDPRLDM---LTARERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLR 199 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A ++ Sbjct: 200 DRIQAVICAYETGLI 214 >gi|296268635|ref|YP_003651267.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091422|gb|ADG87374.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 212 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 5/141 (3%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + G + RL +L Sbjct: 77 RFLALSVSDAAEDVIGVIRGGARGYVTKTISGPELTDAIHRVA-DGDAVFSPRLAGF-VL 134 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ + D LT RE E L I+ G EIA L IS TV +++S++ Sbjct: 135 DAFASTPAPPIDPELD---SLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVL 191 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK R +A +V Sbjct: 192 RKLQLSNRHELSRWASARRLV 212 >gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1] gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus sp. MC-1] Length = 206 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 14/159 (8%) Query: 91 ALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLL 147 L+ D V++ RPT L H P Y + + ++ + Sbjct: 59 GLNGLDVVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDAILAV 118 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 R + A + +L+ RE E + +++G+T+ EIA Sbjct: 119 AAGKRFVS-----------EVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIA 167 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS TV+ + +MRK T + + YA+R +V Sbjct: 168 RSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRMGLV 206 >gi|333027751|ref|ZP_08455815.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332747603|gb|EGJ78044.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 216 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ +G Sbjct: 82 HADVLEAVKSGATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLV------LGEYRRL 135 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 136 AAEPEPKTSGGGPETPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 196 QLHNRVELVRYAIEQGL 212 >gi|113955465|ref|YP_731403.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113882816|gb|ABI47774.1| possible DNA-binding response regulator [Synechococcus sp. CC9311] Length = 243 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 10/155 (6%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 + + + L+ + P+ T+ + I P + CS +G+ + Sbjct: 86 VRRAKQDHPTLKALLLVQRPILRTILQAIDAPC---DGLCS------HQNVGMGGVSAAL 136 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + D ++ ++A + ELT +E + L + G ++ EIA L Sbjct: 137 TAMESDGMYHDSVIA-DVLRHGRLGRALGSIPPELTLKEEDVLRGLCRGMSNQEIADSLV 195 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S +TV ++IAS++RK R+ A+ A + ++ Sbjct: 196 VSIDTVKSHIASLLRKLQANNRTHAVVVAFQQGLI 230 >gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1067 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDF 184 +D LT + R+R L R L + LL + M Sbjct: 947 LDEGAPLLTL-LYRLRDELRKQRTTENPAPASRYLDRLILLCKQEQQMGVPSGEQAELVE 1005 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L ISEG+++ EIA L I+ +TV ++I +I K K+R+ A+ A R N Sbjct: 1006 SLSERECEVLRHISEGRSNREIARQLVIALSTVKSHIRAIYAKLGVKSRTQALIQARRLN 1065 Query: 245 IV 246 ++ Sbjct: 1066 LL 1067 >gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp. ADP1] Length = 246 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 23/235 (9%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW-DLFQEQKLDSI--VSSDWPFDLV 87 L ++ + + + ++ +E+ +D + V +W Sbjct: 14 QTLRQIRQASKIEDIFDVVVEFAQNIDFDRLIICSIAPHGKEELIDEVFFVYGNW----T 69 Query: 88 RCMALSEKDKYYNVLQRPTELFC---PVF--HTLPENITPPAGMDNRYCSLTFDVARIRI 142 + E++KY +F P F T +N + + S + + +++ Sbjct: 70 DRTNIEERNKYLRNCPITRHIFDYDEPFFWTKTFNKNNSKETYRVIKNISERGEESGVQV 129 Query: 143 GLMLLFPKGRIIL-RDRLWEIGL-----LAAYQANMFKSYDVHWG-----KDFELTGREV 191 + I +L ++G L + F+ ++ LT RE Sbjct: 130 PIFGRTGLEGAISFAGKLSDLGADFRFILQSVCVTAFREIQSKRSLNLLRENSVLTQREK 189 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L W + G+ EIA IL IS TV N++ SI +K K+ AIA A+ + Sbjct: 190 EILKWTAVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASALLKGEI 244 >gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 208 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG + IA LGIS +T ++ +I+ K +R+ AI A R Sbjct: 145 PLTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 204 Query: 245 IV 246 +V Sbjct: 205 LV 206 >gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 7/187 (3%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPT-ELFCPVFHTLPENITPP 123 D + ++ P ++ + + D ++R + ++ + T E+ Sbjct: 36 DAADGETALRLMEELQPDVVLMDLRMPSMDGITAIEQIRRCSPQVAILILTTYNEDDLMI 95 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVH 179 G+ C R+ L + R + + + L +Y ++ + Sbjct: 96 RGLQAGACGYLLKDIRLDTLLNAIRAAARGEILMQSDIMARLLSYTTKSAPFEPRASNQS 155 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT RE E L ++ G S +IA LGI+ TV Y+ SI K +R+ AI Sbjct: 156 HQSSIDLTEREREVLIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITV 215 Query: 240 AVRNNIV 246 A+R I+ Sbjct: 216 AIRYGIL 222 >gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 356 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L W+ +GKT+ +I ILG S T ++ + K +TR+ A A++ Sbjct: 287 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIKR 346 >gi|94263624|ref|ZP_01287434.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93456044|gb|EAT06195.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 43/112 (38%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L DV + M I I L + + LT RE E Sbjct: 102 LQHDVDGYLLKTMPALKLVEAISDALTGAIVLPTGLKRQTPAPLQPSPENQYGLTPRERE 161 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L W+SEGK++ EI VI IS NTV +++ +M K R AV + Sbjct: 162 ILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213 >gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica] Length = 249 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITP----PAGMDNRYCSL 133 PF + L K+ + + F V H N+ A Sbjct: 79 PFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIASNGQEELEK 138 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 R + ++L+ + ++++ LA ++ + Y K T RE E Sbjct: 139 RLSSERGAMQMLLID------INEQMYR---LAGAASSSNQKYHTDADKPI-FTPRENEV 188 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W S GKT EIA I GIS +TV ++ +I+ K AI V ++ Sbjct: 189 LYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241 >gi|302525783|ref|ZP_07278125.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434678|gb|EFL06494.1| two-component system response regulator [Streptomyces sp. AA4] Length = 221 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EL+ REVE L +++G+++ EI L +S TV ++++ I RK T R+ +A A Sbjct: 155 NTPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALA 214 Query: 241 VRNNIV 246 +R ++ Sbjct: 215 MRAGVI 220 >gi|296447080|ref|ZP_06889013.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296255425|gb|EFH02519.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 306 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL S + F LT RE E ++WI+ GK++ +IA IL IS TV+ ++ Sbjct: 220 LLFRLSERHVVSDEAFLVGKFALTSREAEVVSWIARGKSNVDIAEILCISPRTVHKHLER 279 Query: 224 IMRKTATKTRSGAIAYAVR 242 I K +RS A + A++ Sbjct: 280 IFIKLGVDSRSSATSVALQ 298 >gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 223 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 43/76 (56%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N+ K + L+ RE+E L +S+ ++ EIA +L IS TV ++++I+RK Sbjct: 144 NIHKMKNSVVESCENLSKREMEILKLMSQNHSNTEIAGMLYISLPTVKTHVSNILRKLGQ 203 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ AI Y++ ++ Sbjct: 204 QNRAQAILYSIATGLI 219 >gi|126348513|emb|CAJ90237.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 220 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 4/194 (2%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + L ++ + D +V+ D L+ + + V P L Sbjct: 28 IEVVGEAADGAAVIPLVRQVRPD-VVAMDVRMPLLDGIEATRALLR-TVTDPPKILVVTT 85 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + A I + L+ ++ + + A Y Sbjct: 86 FENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRRLA--ARYGDGG 143 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE E L ++ G ++ EIA L + TV +++++++ K + Sbjct: 144 GDRAARAESTRARLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARD 203 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ A + V Sbjct: 204 RTQAVITAYESGFV 217 >gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 84/225 (37%), Gaps = 11/225 (4%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSS 80 + +D + R+ +D M + + E VG + + + + +V Sbjct: 1 MSSTDQMIRVALVDDQPLVRMGLATMIGAEPDLEVVGEASDGSAALPMLR-RTHPDVVLC 59 Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 D ++ + + E+ LQ + F + + + + Sbjct: 60 DIRMPVLDGLGMLEQVTRDASLQDVRVVMLTTFELDEYVFEALRLGASGFLLKDAEPVAL 119 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + ++ G ++ + + + ++ + D LT RE E + W++ G Sbjct: 120 LDAIRVVADGGSLLAPTVTRRV--IEEFGSSRRAANPHPRLGD--LTEREREMVAWVATG 175 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +++ EIA L +S +TV +++ M K + R+ + +A+ + + Sbjct: 176 RSNAEIAAELVVSPDTVRTHVSRAMVKLHARDRAQLVVFAIESGL 220 >gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103] gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis] gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103] gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355] Length = 249 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 25/197 (12%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYY---------NVLQRPTELF 109 L R + FQ D ++ + + PF + L ++ N++ T + Sbjct: 57 LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLRFTKIFSLSKQYNIVNGFTYVL 114 Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 + L G D + + ++L+ ++++ LA + Sbjct: 115 HDHMNNLALLSVIIKGNDQAALEQRLASEQGTMQMLLID------FNEQMYR---LAGAE 165 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A + + + K + RE E L W S GKT EIA I GIS +TV +I +++ K Sbjct: 166 AERAPTVNQNADKTI-FSSRENEVLYWASMGKTYSEIAAITGISVSTVKFHIKNVVVKLG 224 Query: 230 TKTRSGAIAYAVRNNIV 246 AI V +++ Sbjct: 225 VSNARQAIRLGVELDLI 241 >gi|94269857|ref|ZP_01291582.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] gi|93451041|gb|EAT02000.1| regulatory protein, LuxR:Response regulator receiver [delta proteobacterium MLMS-1] Length = 218 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 43/112 (38%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L DV + M I I L + + LT RE E Sbjct: 102 LQHDVDGYLLKTMPALKLVEAISDALTGAIVLPTGLKRQTPAPLQPSPENQYGLTPRERE 161 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L W+SEGK++ EI VI IS NTV +++ +M K R AV + Sbjct: 162 ILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213 >gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 219 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 8/161 (4%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D +R + + D VL E V + T L V R G Sbjct: 64 DAIRGIVDALPDTRILVLSASGE-HTDVLEAVKAGATGYLVKSAGADELLDAVRRTADGY 122 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + P ++ L E LA A LT RE L +++G T+ Sbjct: 123 PVFTPGLAGLV---LGEYRRLADEPARRPAGDPAVPA----LTERETGVLRLVAKGLTAR 175 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I LG+S TV +++ + +RK R+ + YA+ + Sbjct: 176 AIGERLGLSHRTVESHVQNTLRKLQLHNRAQLVRYAIEQGL 216 >gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 232 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 12/152 (7%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 +R E+ V + + + + + Y I + L I Sbjct: 86 EARRRLPEVDIMVVSVMADEASVLSAIRVGAMGYILKDAFPNDIAAAVHDLVRGHSPISA 145 Query: 157 DRLWEIGLLAAYQAN--MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +A Y + D LT RE + L I++G EIA LGIS Sbjct: 146 S-------IARYIVRNAQLPAGDEPCEPAIRLTPREADILWGIAKGYRYAEIAAQLGISP 198 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV YI +I RK R A+ AV+ ++ Sbjct: 199 QTVTGYIKTIYRKLHVTNRGEAVFEAVQQGLI 230 >gi|312140502|ref|YP_004007838.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311889841|emb|CBH49158.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 220 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + ++ P + + E + G+ L Sbjct: 50 DVVLMDVRMPEMNGLDAAR-EILAAAMEPPVRVLMLTTFDIDEYVYEALGIGASGFLLKD 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + + G +L + L + + LT RE E L Sbjct: 109 APAEELIRAVRVVAAGEALLAPSV--TKRLIEDVTRRRAAPRRRDRQLETLTPREREVLE 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV ++ ++ K + + R+ A+ A + +V Sbjct: 167 LIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGLV 217 >gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 253 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 14/183 (7%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 +R F LD + +D +L+ M V+ E V H T Sbjct: 81 IRQHEFDVMLLDLKLGADNGLELIEVMKSHRPQAEVIVVSV-VETEEQVLHAFELGATGY 139 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 ++ + + V ++ G + P L R + + G D Sbjct: 140 LVKNSWFGNYPQAVLQVVNGGASITPSLARRLLQR-----------CDKRPASGAVPGSD 188 Query: 184 FE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE E L ++ G TS EI L IS TVN +I +I RK ++R+ A+ +A Sbjct: 189 MSDRLSSRECEVLRMVASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVRFAY 248 Query: 242 RNN 244 Sbjct: 249 LRG 251 >gi|297194807|ref|ZP_06912205.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720731|gb|EDY64639.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 8/177 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + L + F + + + Sbjct: 50 DVVLMDIRMPGTDGLSATREITADPELSHVRIVMLTTFEVDEYVVQSLRAGASGFLGKGA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW------GKDFELTGR 189 + + + + ++ GL+A + A + D + LT R Sbjct: 110 EPDELLNAIRVAAAGEALLSPAATK--GLIATFLAQGGAADDDGLHAGDLSERLSALTVR 167 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L ++ G ++DEIA L +S TV ++ M K + R+ + A + +V Sbjct: 168 EREVLVLVAGGHSNDEIATRLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 224 >gi|153006507|ref|YP_001380832.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152030080|gb|ABS27848.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 541 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + L LA A +S LT RE++ L ++ G+T+ IA L +S T Sbjct: 455 EGLGASPELARLDAIRERSTPAGRS---PLTPRELQVLRLVAAGRTNKAIAAELFLSERT 511 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I++I RK +R+ A A+A ++ Sbjct: 512 IDRHISNIFRKLNVPSRAAATAHAYDRKLL 541 >gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311] gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CC9311] Length = 83 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 40/63 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + ++EG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ + Sbjct: 3 ISLSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDH 62 Query: 244 NIV 246 + Sbjct: 63 GKI 65 >gi|148657384|ref|YP_001277589.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569494|gb|ABQ91639.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 214 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 17/202 (8%) Query: 48 RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQR 104 + L E + + V + L +++ S+ P +V +A+ +D + +R Sbjct: 22 GLRGLLER---ENDMTVVATATDGESLLALIESERPDVVVMDLAMPTRDGLSCLREIRRR 78 Query: 105 PTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + + + + + + +L D R I + G+I+ + + Sbjct: 79 GMPVKIVILTAFGDGGALQSAWELQADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQA 138 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 S H LT RE + L ++EG + +IA L + +TV ++ Sbjct: 139 AD---------PSQTQHTSLLARLTQRERDVLRLLAEGMPNAQIAERLVVQESTVKYHLQ 189 Query: 223 SIMRKTATKTRSGAIAYAVRNN 244 +I +K R+ A R Sbjct: 190 NIFQKLGVTNRTEAAQVYYREG 211 >gi|94500934|ref|ZP_01307459.1| probable transcriptional regulator [Oceanobacter sp. RED65] gi|94426874|gb|EAT11857.1| probable transcriptional regulator [Oceanobacter sp. RED65] Length = 897 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVI 209 L D+ + A N+ + D K+F L+ RE+ L I+EG ++ EIA Sbjct: 801 LPDQYKHKPFVQAILKNIELTEDASPNKEFAKMRLVLSQREMAVLKLIAEGLSNQEIAER 860 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS +TV + I K K+R+ AI A I+ Sbjct: 861 LFISLHTVKTHARRINGKLDVKSRTQAILKAKEVGIL 897 >gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 232 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D+ L V G L P L ++ E + +A Sbjct: 90 VHEALRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSP----PLSEKAIEAYMEKTAEAT 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 Y+ LT RE E L +S+G T EIA L IS TV + A++MRK + Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198 Query: 232 TRSGAIAYAVRNNIV 246 ++ + YA++ I+ Sbjct: 199 NQTQLLRYALQRGII 213 >gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 215 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE+E L ++EG ++ IA LGI+ TV ++ ++M K R+ A+ Sbjct: 143 PPRNPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAV 202 Query: 238 AYAVRNNI 245 A A R + Sbjct: 203 ALAWREGL 210 >gi|75906884|ref|YP_321180.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700609|gb|ABA20285.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 239 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L I EG ++ IA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 176 YTLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRS 235 Query: 244 NIV 246 +V Sbjct: 236 GLV 238 >gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 12/176 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMD---NR 129 +V+ P L+ + + +D V + + V T ++ + A + Sbjct: 51 ELVAEHQPDVLLVDLRMPNRDGVETTELVRAQHPKTEVVVLTTYADDDSLLAALKAGARG 110 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + + D I L + + + A +A V + LT R Sbjct: 111 FLTKDTDAEAIARALRSAAAGQSTVDGELQRRLVAAATSRAP------VRTKELEGLTAR 164 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EVE L I+ G ++ EIA L +S TV ++ + K + R+ A+A+A R I Sbjct: 165 EVEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFAYRAGI 220 >gi|37519813|ref|NP_923190.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210804|dbj|BAC88185.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 232 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAA--YQANMFKSYDVHWGKDFE---LTGREV 191 V + G + P I+ + + + AA + + ++ D + E LT RE+ Sbjct: 117 VEKTHEGTSFIDPSVAGIVLNEVRSRSVHAAPGTRQTVIQAADPELAQILEASPLTEREL 176 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I +G +++ IA L I+ TV ++ +I+ K R+ A A+R+ +V Sbjct: 177 EVLQLIVQGHSNEGIAQQLYITVGTVKTHVRNILSKLCADDRTQAAVLALRSGLV 231 >gi|315502094|ref|YP_004080981.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408713|gb|ADU06830.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 216 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + + P L F + Sbjct: 50 RVVLMDVRMPAIDGIQATRRLLAASA-DPPRVLVVTTFANDEYVYEALRAGAAGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A + + ++ ++ + ++ + + D + LT RE E L Sbjct: 109 RPAEVVQAIRVVAAGDSLLFPAAIRQL-------VDTYGRRDGDRLRAARLTEREAEVLR 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++ +++ K + R+ A+ A + V Sbjct: 162 LMAAGLSNPEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212 >gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 226 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 12/176 (6%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 +V P ++ + + D E + + P+ + + Sbjct: 55 RHVVGDPMPHVVLMDLQMPRLDG--------IEATRSILASYPDVKVVVLTSFSEAERVH 106 Query: 135 FDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 ++ G +L + + E+ L AA + + LT RE Sbjct: 107 AALSAGAAGYVLKDAEPEEVATAVRAAVKGEVHLDAAVARLLARRMASPQVGVTSLTARE 166 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L + +G ++ EIA L IS T ++++++ K +R+ A A+R +V Sbjct: 167 RDILVLVGQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGLV 222 >gi|325675879|ref|ZP_08155563.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553850|gb|EGD23528.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + ++ P + + E + G+ L Sbjct: 52 DVVLMDVRMPEMNGLDAAR-EILAAAMEPPVRVLMLTTFDIDEYVYEALGIGASGFLLKD 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + + G +L + L + + LT RE E L Sbjct: 111 APAEELIRAVRVVAAGEALLAPSV--TKRLIEDVTRRRAAPRRRDRQLETLTPREREVLE 168 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV ++ ++ K + + R+ A+ A + +V Sbjct: 169 LIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGLV 219 >gi|258592172|emb|CBE68481.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 367 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILG 211 +RL L A + + + +LT RE E L W++ GKT+ E+A ILG Sbjct: 271 ERLVIRHLCEADRCILLMEQQPVSVQPVAFKLSDLTRREAEVLLWVAHGKTNVEVAEILG 330 Query: 212 ISRNTVNNYIASIMRKTATKTRSGA----IAYAVRNN 244 +S TV ++ I +K +TR A A R Sbjct: 331 LSSRTVQKHLEHIFKKLGVETRVAATRALAVGAFRKR 367 >gi|256392814|ref|YP_003114378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359040|gb|ACU72537.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 525 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REV+ L ++ G ++ EIA L ISR TV++++ I KT T R+ A YAVR+ + Sbjct: 462 LTRREVQVLRLLARGLSNGEIAEQLVISRKTVSHHVEHIYAKTGTANRAMAGLYAVRHGL 521 >gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 210 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 ++V + + ++ D FD+V + + +P L L Sbjct: 9 MIVDDHPLMRRGIRQLLELDPTFDVVAEASSGSEAIALASRAQPDLILLDLNMKGLSGLD 68 Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-- 174 T A G+D R LT +R + ++ +L+D EI L +QA K Sbjct: 69 TLKALRNEGVDARIIILTVSDSRSDVYALVDAGADGYLLKDSEPEILLSQIHQAASGKNV 128 Query: 175 ----------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S +LT RE++ L ++ G ++ +IA L IS TV +I ++ Sbjct: 129 FSDTISEYLSSRTELTDPFADLTERELDVLQEVARGLSNKQIASQLHISEETVKVHIRNL 188 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK ++R A + N Sbjct: 189 LRKLDVRSRVAATVLYLENK 208 >gi|294664443|ref|ZP_06729796.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605777|gb|EFF49075.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE E L ++ G ++ +I L IS TV ++ +I+ K + R+ A+ A+R Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALRISEETVKAHMKNILGKLGVRDRTHAVTVALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGIL 209 >gi|297195058|ref|ZP_06912456.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197721552|gb|EDY65460.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 8/170 (4%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136 P +V + + D + P+ V T ++ + + + D Sbjct: 52 PDVVVMDIRMPGMDGIEATGRITAGPSTARVLVLTTFDDDEYVYGALRAGASGFLVKDMD 111 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + ++ +I L+ + A +T RE E LT Sbjct: 112 LDDILAAVRVVAAGDALIAPSVTRR--LIEEFAARPKPPATPPHPAIDGVTDREREVLTL 169 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I G ++ EIA L IS T ++ + K A + R + A +V Sbjct: 170 IGRGLSNGEIADRLCISPATAKAHVGRLFTKLAARDRVQLVIIAYELGLV 219 >gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 18/176 (10%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRY 130 S P +V + L D Q + P H T E I + + Y Sbjct: 52 LSLKPDLVVMDIGLPGLDGIAATQQ--IKTALPEVHVVMLTSHTTETEVIAALSSGADAY 109 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 C V R+ + + ++ + S + G +L+ RE Sbjct: 110 CIKGASVDRLLSAIAAAQEGATYLDPQIARQV-----IEHLKPPSNNNMLG---QLSQRE 161 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ L + EG ++ EIA L +S NT+ ++ IM K A R A A+R +V Sbjct: 162 LDVLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 217 >gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] Length = 249 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ + A Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAA 166 Query: 172 MFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + ELT RE E L I+ G ++ EIA L IS TV ++A Sbjct: 167 PVSAMSASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAH 226 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ +A N++V Sbjct: 227 ILSKINARDRVQAVVFAYENHLV 249 >gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 260 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 19/234 (8%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 + + + L G + L + + V + +P V Sbjct: 27 DKFEPAFEQIKAATNVDAAIRILQAEYGLDFVTYHLAQTIAS--KIDSPFVRTTYPDAWV 84 Query: 88 RCMALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVA 138 L+ K ++++ E P PE G+ S+ Sbjct: 85 SRYLLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADK 144 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDF--ELTGREVE 192 R L+ L + L + A+ + Y++H D L+ RE+E Sbjct: 145 AQRRALLSLNARIPADEWSELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPTLSPREIE 204 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I+ Sbjct: 205 CLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258 >gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] Length = 204 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 19/175 (10%) Query: 78 VSSDWPFDLVR-CMALSEKDKYYNV-----LQRPTELFCPVFHTLPENITPPA-GMDNRY 130 + SD PFDLV + + + + + R + + + Sbjct: 41 IESDGPFDLVLLDLNMPGMNGLSGLETCIGMDRARHVALFTGDASRDLAERALELGAAGF 100 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 T + + + + + +G ++A Q D H +LT RE Sbjct: 101 VPKTLPAKSLVNAIRFMAMGEQYLP------VGFMSAEQ-----PNDTHPMAK-KLTERE 148 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L ++EGK++ EIA L +S T+ ++ ++ RK R+ A A + Sbjct: 149 RQVLKGLTEGKSNKEIARDLDLSEPTIKLHVKTLYRKVGVSNRTQAAMAAREAGL 203 >gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 245 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 16/189 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V SD + L +K + L +F + + Y Sbjct: 59 QQMLPDVVISDVMMPRLDGYGLLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 118 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177 FD + + + + + +L++ ++G +A QA S + Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSTE 178 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 T RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 179 PVV---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235 Query: 238 AYAVRNNIV 246 YA+ + +V Sbjct: 236 RYALEHRLV 244 >gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 222 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 4/160 (2%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 +R S + + R + + + E+ + + + + Sbjct: 62 IRLPGASGIEACEEITTRFPDTRVVMLTSYAEDEMLFSAIRSGASGYILKQIGGEDLIRA 121 Query: 147 LFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L GR + L + + +Q + L+ +E L +SEGKT+ E Sbjct: 122 LESVGRG---EALLDPAVTQRVFQEVRRAVKEEEASAFANLSQQEKHVLLLVSEGKTNRE 178 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L + TV NY++SI+ K R+ A AYAV +N+ Sbjct: 179 IAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVEHNL 218 >gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13] Length = 213 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ELT RE L + EGK + EIA L +S TV N++ I++K + R+ +A+ Sbjct: 149 EMVELTSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAI 208 Query: 242 RNNIV 246 RN +V Sbjct: 209 RNGVV 213 >gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 520 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 3/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + + + + + ++ L Sbjct: 370 PRVVILTTFDLDRYVYAALSAGASGFLLKDVTPEHLASAVRTVRTGDALLAPAITRR--L 427 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + + + D+H LT RE+E L ++ G ++ E+A L ++ TV ++A + Sbjct: 428 VQRFARHGGDTADLHRDL-ASLTPRELEVLGLLARGLSNAELAARLHLAETTVKTHVARV 486 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ A +V Sbjct: 487 LAKLGLRDRVQAVIVAYETGLV 508 >gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica] Length = 249 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVF 113 L R + FQ D ++ + + PF + L K+ + + F V Sbjct: 57 LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNTINGFTFVL 114 Query: 114 HTLPENITP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 H N+ A R + ++L+ + ++++ LA Sbjct: 115 HDHMNNLALLSVIIASNGQEELEKRLSSERGAMQMLLID------INEQMYR---LAGAA 165 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ + Y K T RE E L W S GKT EIA I GIS +TV ++ +I+ K Sbjct: 166 SSSNQKYHTDADKPI-FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLG 224 Query: 230 TKTRSGAIAYAVRNNIV 246 AI V ++ Sbjct: 225 VSNARQAIRLGVELELI 241 >gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + G ++ IL + + + + + ELT RE E L Sbjct: 100 AIQAGARGYLIKDTTQEEIL-EAIAAVHAGSLHLPRHIAQRISERIGRQELTRRETEILE 158 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G T+ EI + GIS NT N++ SI++K R+ A A+ I+ Sbjct: 159 MLAKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRGII 209 >gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 221 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L I D+ L + + G L P L+ + + Sbjct: 92 VQKLLELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGITA---------HFLSGFVGS 142 Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + K L+ RE E L ++EG +++ I ILGIS TV + A+IM+K Sbjct: 143 GKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLN 202 Query: 230 TKTRSGAIAYAVRNNIV 246 + + YA+R ++ Sbjct: 203 LHKVADLVMYAIRAGLI 219 >gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 217 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 7/146 (4%) Query: 99 YNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 +V++ E V T E+ + G F + + L + Sbjct: 65 VSVVEELAEFTKVVMLTHTEDPQVIQTSLRRGASGYLVHGNFTLDELNRALREVVHGTGS 124 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 L L + + LT RE E L + G ++ EIA L +S Sbjct: 125 PLSP--VAATALVSSLRAAPPTPVPVAPAALGLTEREAEVLEAAARGLSNAEIAKELFLS 182 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239 TV N+I I RK +TR+ AIA Sbjct: 183 EKTVKNHINRIFRKLGVRTRAAAIAR 208 >gi|298249257|ref|ZP_06973061.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547261|gb|EFH81128.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 9/180 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAG 125 E+ +V D + +A + K R L + L Sbjct: 52 ERTAPDVVLMDVRMPRMDGIAATRAFKERWPESRIVILTTFDDSELIHAGLQAGALGYVL 111 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184 D L + G +LL P I + + + A + G D Sbjct: 112 KDITAEQLATSIRAAAQGQVLLHPD---IASKVIASLSSVPTETAVTPATPPSIGGSDLA 168 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++ G ++ EI+ L I+ TV N++++I+ K + R+ A A Sbjct: 169 QLTEREREILALLAHGASNREISEALYITGGTVKNHLSNILGKLGVRDRTQAALKARELG 228 >gi|213970476|ref|ZP_03398604.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383864|ref|ZP_07232282.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060596|ref|ZP_07252137.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302134766|ref|ZP_07260756.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924794|gb|EEB58361.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L ++ G ++ Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 249 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG + EIA L + TV +++ ++ K + R A+ +A I Sbjct: 184 LTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGI 243 Query: 246 V 246 V Sbjct: 244 V 244 >gi|56798118|dbj|BAD82901.1| transcription factor [Pseudomonas sp. MT-1] Length = 218 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + G M L P+ +L + + Sbjct: 95 VLEALRNGADGYLLKDMDAEQLVEQIRLAATGRMALSPELTQVLAEAIR----------- 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE E L I++G+++ IA LGI+ TV ++ +++ K + Sbjct: 144 -VRPKPTGQVPFSSLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLR 202 Query: 232 TRSGAIAYAVRN 243 +R A + + N Sbjct: 203 SRVEAAVWVLEN 214 >gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. race 4] Length = 233 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 38 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 97 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 98 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 157 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 158 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 217 Query: 231 KTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 218 RTAKQAVYKAINIGMV 233 >gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 208 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 11/158 (6%) Query: 91 ALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 +S + + R E+ H PE + + V + +L Sbjct: 59 GMSGIETAKTLRTRAPEVRLVALSMHEDPEYVQSFFEAGGQGYVPKSAVEAELVDAVLAV 118 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G RL + +A AN ++ +LT RE+E + I+EGKT EIA Sbjct: 119 VRGEYYAPARL--LSRVAREMAN-------PHAREAKLTERELEVVRQIAEGKTYKEIAE 169 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS TV Y K KTR+ + +A+ ++ Sbjct: 170 HLGISEKTVATYRERAAEKLGLKTRAELVRWALERGLL 207 >gi|291300074|ref|YP_003511352.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569294|gb|ADD42259.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 213 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 16/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + D L V G L P L DRL G Sbjct: 91 VLPAMEAGAVGYLLKDTPRQDLYRAVRSAADGETALSPSVAARLVDRLRSPG-------- 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + L+ RE+E L+ ++ G ++ IA L IS TV ++ I K Sbjct: 143 --------PARSSALSAREIEVLSLVAAGNSNKAIAAALFISEATVKTHLLHIYGKLGVN 194 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+A + ++ Sbjct: 195 DRAAAVAAGYDSGLL 209 >gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 244 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 82/215 (38%), Gaps = 22/215 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 A+ Y F +V E+ + S+ P ++ + + D + + + Sbjct: 32 AVQAYFEDEGF-IVSTAADGEEGWEK-AQSEVPDVVLSDVMMPRVDGFGLLKLLREDERL 89 Query: 108 LFCPVFHTLPENITPP------AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW- 160 PV + +T AG+D+ Y FD + + + + +L++ Sbjct: 90 GGTPVIFLTAKGMTADRIAGFRAGVDD-YIPKPFDPDELVARVRNVVQRQERLLKEAARY 148 Query: 161 ---EIGLLAAYQANMFKSYDVHWGK------DFELTGREVECLTWISEGKTSDEIAVILG 211 ++G +A + GK + T RE L ++EG + EIA L Sbjct: 149 ADTDLGQMAKQIGEIRTMLQGGAGKAAGQSVEHSFTPREASVLQLVAEGLMNKEIARQLE 208 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S V Y++ + KT T +R+ + YA+ + +V Sbjct: 209 TSIRNVEKYVSRLFAKTGTASRTELVRYALEHGLV 243 >gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 218 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185 Y ++ + ++ G+ + L ++ + + D Sbjct: 97 AAGYVLKDTPAPQLVTAVRDVYKGGKYLSSQVLGKL-----VEDFRARVRDAKLRPRIST 151 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG + EIAV+LG+S TV + ++MRK ++ + YA++ I Sbjct: 152 LTPREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDIHNKAQLVTYAIQKKI 211 Query: 246 V 246 + Sbjct: 212 I 212 >gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + L L + T + + + Sbjct: 53 DVVVMDLRMPDLDGIDATRLIAADDDLAGVRVLVLTTYDTDEYIVEALRAGASGFLVKDT 112 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A + + + ++ L+A G + L+GRE E LT Sbjct: 113 KPAELLDAIRTVAAGEALLSPG--PTARLIARLLRTPVPPPAAAVGPEC-LSGREREVLT 169 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G + EIA LG+S T +++ IM K + R+ + A + +V Sbjct: 170 LVARGLNNTEIAESLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 220 >gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 222 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 6/161 (3%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL+ + + +++R +L + + E+ A ++ S Sbjct: 62 MDLMMPI-MDGVQATAAIMERFPDLKIVMLTSFLEDDKVLAAVEAGAVSYVLKTVSAEEL 120 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + L + + L G D LT RE E L I++G + Sbjct: 121 IYALTGAVKGMPVMTSDVSQALTRGLRQR-----SAQGADEGLTEREKEVLLLIADGMAN 175 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EIA L IS TV ++++++ K + R+ YA R Sbjct: 176 KEIAEELHISIKTVKTHVSNLLMKCELEDRTQLAVYAHRKG 216 >gi|113954826|ref|YP_730328.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113882177|gb|ABI47135.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 234 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE++ + I G + EIA L IS TV ++++++++K + R+ A +A+ + Sbjct: 169 PLSERELDVIRCIIRGMRNIEIADALFISSETVKSHVSTVIQKLGVRDRTQAAVFAMTHG 228 Query: 245 IV 246 ++ Sbjct: 229 LI 230 >gi|291299967|ref|YP_003511245.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569187|gb|ADD42152.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 10/171 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + L P + F N + Sbjct: 50 DVVLMDVRMPNVDGIEATRQILRIPELS-PKIIVVTTFDNDDYVYEALRAGANGFLLKRT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + G+ ++ ++ + + + +S G LT RE E L Sbjct: 109 PPDDLLAGIRVVARGDALLFPAAVRRLAA-----GHTGRSTLDAAG----LTEREAEVLR 159 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L +S TV ++A I+ K + R+ A+ A V Sbjct: 160 LMARGLSNAEIAARLFLSAETVKTHVAKILAKLRVRDRTQAVIKAYEAGFV 210 >gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 212 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E LT ++EG T+ EIA L +S +TV ++ ++ K + R A+ A Sbjct: 147 PLTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAKLEVRDRVQAVILAYDCG 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|256784749|ref|ZP_05523180.1| two-component response regulator [Streptomyces lividans TK24] Length = 216 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 9/177 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNR 129 +V+ P ++ + + D + T++ + E++ P Sbjct: 38 RVVAELAPDVVLMDLRMPRCDGVEATRRIRSEHPGTQVVVLTTYADDESLFPALHAGARG 97 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + I + + + L + + LT R Sbjct: 98 YLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRR---LLEWLSESEPRPTGPPEPPDGLTTR 154 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L I+EG T+ +IA L +S TV +I ++ KT K R+ A+ YA +V Sbjct: 155 ETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 211 >gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 234 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 10/116 (8%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y S + L + + + L S D GK +T Sbjct: 114 GYLSKALPARELVEALERIHAGEELFNQAPLRAASA---------PSLDW-PGKREGITD 163 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE E L I++GK++ E+A + +S NTV +YI SI RK ++R+ A+ + V + Sbjct: 164 RESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHG 219 >gi|166366585|ref|YP_001658858.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166088958|dbj|BAG03666.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 237 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE E L I G ++ EIA L I+ TV ++ +++ K + R+ A A+ Sbjct: 172 ENAPLTAREREILDLIVAGCSNAEIAKRLYITIGTVKTHVRNVLNKLSVDDRTQAAVLAL 231 Query: 242 RNNIV 246 R+ +V Sbjct: 232 RSGLV 236 >gi|84496167|ref|ZP_00995021.1| putative two-component system regulator [Janibacter sp. HTCC2649] gi|84382935|gb|EAP98816.1| putative two-component system regulator [Janibacter sp. HTCC2649] Length = 232 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L E +AA + ELT RE E L ++ G + EIA L +S TV Sbjct: 137 LGEFRRMAADDGEAVAAPQTADRPIPELTDRETEVLRLVATGMSYKEIAAELFLSHRTVQ 196 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245 N++ + + K R + +A+ + Sbjct: 197 NHVQNTLGKLHLHNRVELVRFALARGL 223 >gi|226365530|ref|YP_002783313.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244020|dbj|BAH54368.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 228 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R I E + + + +S + LT RE+E L +++G ++ +I L Sbjct: 134 RAIRAVSRGESAFDSRSASAVIRSLNGQTTPREGLTERELEVLQLLAKGLSNAKIGERLF 193 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++++IMRK R+ A+ A + ++ Sbjct: 194 ISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228 >gi|331699140|ref|YP_004335379.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953829|gb|AEA27526.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ +A + + L + F + + Sbjct: 50 DVVLMDIRMPVLDGLAATREIASDPRLSGVRVVVLTTFAEDEYVFEAIRSGASGFLVKDT 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + ++ ++ L+ + + V LT RE E + Sbjct: 110 EPAELVHAVRVVADGDALLSPGVTRR--LIEEFAVRSGPAGAVAASALTVLTDREREVVA 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G T+D+IA L +S T +++ M K + R+ + A + +V Sbjct: 168 LVAGGLTNDDIAERLVVSPATAKTHVSRAMGKLGCRDRAQLVVLAYESGLV 218 >gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 217 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG+++ EIA L +S TV ++++ I KT + R+ A+ A + + Sbjct: 153 LTDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQAVGIAYESGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 208 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 16/163 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARI 140 DL + + + Q L VF T + +D Y I Sbjct: 55 MDLALGAGIDGVEAIRRIRQVDRALPVLVFTTYDTDADVVRAIDAGAIGYLLKDSTPQEI 114 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + ++ +A+ + + LT RE E LT ++EG Sbjct: 115 FAAVRGAAAGQSVLSPP-------VASRLLQQMQRPEEA------LTPREAELLTLMAEG 161 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 T+ E+ L IS TV ++A I K TR+ A++ A+R Sbjct: 162 MTNKELGKALFISEATVKTHLAHIYAKLGVDTRAAAVSVALRR 204 >gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus] gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] Length = 217 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%) Query: 78 VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV----------FHTLPENITPP 123 V P L+ +++ + +++ + + FH L Sbjct: 42 VMQHQPDVLIMDLSMPPGESGLIATSKIVESFPDTKILILTMYDDEEYLFHVLRNGAKGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + L V + G + PK L+ + N + + Sbjct: 102 ILKNAPDEQLISAVRTVYRGDTYIDPK---------MTTSLVNEFVNNTGQDANSTNDPF 152 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L I++G + EIA L +S TV + IM+K K++ + YA++ Sbjct: 153 RILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKK 212 Query: 244 NIV 246 ++ Sbjct: 213 KLL 215 >gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 8/177 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAGMDNR 129 +VS P ++ + + D +++ F + E + R Sbjct: 44 HLVSELVPDVVLMDLRMPAMDG-LEAIEQIRATFPHIAIIVLTTYDEDELMLRSLQAGVR 102 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 L + + +G ++L+ L + +L + + +LT R Sbjct: 103 GYLLKDSGLETVLQAIERAARGEMLLQPELLQR-VLDYAARRAAPASPPPGNSNVQLTER 161 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L I+ G+ S EI LGI+R TV +Y+ SI K +R+ A+A A+ ++ Sbjct: 162 EQEVLAGIATGERSKEIGARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIERGLL 218 >gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D+ L V G L P L ++ E + +A Sbjct: 90 VHEALRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSP----PLSEKAIEAYMEKTAEAT 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 Y+ LT RE E L +S+G T EIA L IS TV + A++MRK + Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198 Query: 232 TRSGAIAYAVRNNIV 246 ++ + YA++ I+ Sbjct: 199 NQTQLLRYALQRGII 213 >gi|120553107|ref|YP_957458.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120322956|gb|ABM17271.1| response regulator receiver protein [Marinobacter aquaeolei VT8] Length = 128 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 165 LAAYQANMFKSYDV------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 LA QA M + G D L+ RE L ++EG ++ I+ LGIS TV Sbjct: 40 LALRQARMEPDAETCARTPEVAGPDEPLSDREQGVLDLLAEGLSNKAISKQLGISVATVK 99 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245 +++++I K + R A+A A + Sbjct: 100 SHLSNIYGKLQAENRMQAVARARELGL 126 >gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 171 Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 14/131 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + R L + + G LL P + +RL + ++ Sbjct: 52 FSAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRD----GPHEDPA 107 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L RE E L I++G T+ +I LG+S TV NY++SI+ K + Sbjct: 108 MAT----------LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLAS 157 Query: 233 RSGAIAYAVRN 243 R+ A Y ++ Sbjct: 158 RTQAAVYLMKQ 168 >gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C] gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ + + +++ ++ D Sbjct: 96 RAGASGFLLKDASARQLAEGVRVVAAGEALLAPSVTKRLISEFSKLSDVQRAADPSGVS- 154 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A YA Sbjct: 155 -ELTERETEVLVLIAQGLSNGEIADRLLVAESTIKTHVSRILVKLGLRDRTQAAVYAYET 213 Query: 244 NIV 246 +V Sbjct: 214 RLV 216 >gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 10/134 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D L + R+ G LL + + R + E A Sbjct: 91 VFGALEAGASGFVLKDCDPEDLVSAIRRLAAGQGLL---DQAVTRRVIGEF-------AR 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 V + LT RE E + ++EG+++ EIA L I +TV +++ M K + Sbjct: 141 RAPLPAVDPAVEDLLTAREKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGAR 200 Query: 232 TRSGAIAYAVRNNI 245 R + +A +N + Sbjct: 201 DRLQTVVWAYQNGL 214 >gi|302865544|ref|YP_003834181.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568403|gb|ADL44605.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 216 Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + + P L F + Sbjct: 50 RVVLMDVRMPAIDGIQATRRLLAASA-DPPRVLVVTTFANDEYVYEALRAGAAGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A + + ++ ++ + ++ + + D + LT RE E L Sbjct: 109 RPAEVVQAIRVVAAGDSLLFPAAIRQL-------VDTYGRRDGDRLRAARLTEREAEVLR 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++ +++ K + R+ A+ A + V Sbjct: 162 LMAAGLSNPEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212 >gi|253997049|ref|YP_003049113.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983728|gb|ACT48586.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 243 Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 14/238 (5%) Query: 13 NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72 NRE + + + V + L + + + + + Y+ A H ++ Sbjct: 11 NRESQAKEAQVRLFNSLGAALFETGWNTDSPQYLLEL--IAAYIAAEHGIIATESAG--- 65 Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 KL+ + + L + + + ++L+ P + + P+ D Y Sbjct: 66 KLNIVATKGQ--TLPQGTRVPMLGIFASLLKYPVKFKAHQYQGSMFWTYTPSDADQEYL- 122 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKDFEL 186 + + + +GL+ L + + L + LA QA+ + D L Sbjct: 123 IPIAIGQQSVGLIALSGQNLQLSPHELITLQSISGILGLALKQASSMSAEDKDLTVIEHL 182 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E + G ++ E+A LGIS TV ++ ++ K + R+ A A Sbjct: 183 TPREREVFALLPSGLSNRELATKLGISAGTVKIHVERVLSKLNLRDRTQAAVKAYELG 240 >gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 226 Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143 V+ + + +L P V T + ++ + + ++ Sbjct: 57 VQMPKMDGIEATRRLLADPDAPKVVVLTTFDNDEYVMSAIRAGASGFLLKDVPPEQLLDA 116 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I L + + + ELT REVE L ++ G ++ Sbjct: 117 IRTVHRGDAVIEARATRR---LLQHVGPLLEGSAPESQLPEELTPREVEVLEAMAYGLSN 173 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA +S TV ++ ++ KT ++ R A+ +A + +V Sbjct: 174 SEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 216 >gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica] Length = 249 Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVF 113 L R + FQ D ++ + + PF + L K+ + + F V Sbjct: 57 LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVL 114 Query: 114 HTLPENITP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 H N+ A R + ++L+ + ++++ LA Sbjct: 115 HDHMNNLALLSVIIASNGQEELEKRLSSERGAMQMLLID------INEQMYR---LAGAA 165 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ + Y K T RE E L W S GKT EIA I GIS +TV ++ +I+ K Sbjct: 166 SSSNQKYHTDADKPI-FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLG 224 Query: 230 TKTRSGAIAYAVRNNIV 246 AI V ++ Sbjct: 225 VSNARQAIRLGVELELI 241 >gi|239979006|ref|ZP_04701530.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291450884|ref|ZP_06590274.1| two-component system regulator [Streptomyces albus J1074] gi|291353833|gb|EFE80735.1| two-component system regulator [Streptomyces albus J1074] Length = 237 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 8/157 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 C ++ +D ++ + V + T L V R G + Sbjct: 75 CQEVAGEDGPRVLVLSASGEHTDVLEAVKAGATGYLVKSAGTEELIDAVHRTARGDAVFT 134 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 P ++ L E LAA A D LT RE E L +++G + +IA Sbjct: 135 PGLAGLV---LGEYRRLAAGPAPTRGKPDAPR-----LTARETEVLRLVAKGLSYKQIAE 186 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV N++ + + K R + YA+ + Sbjct: 187 RLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 223 >gi|238025165|ref|YP_002909397.1| response regulator, NarL family protein [Burkholderia glumae BGR1] gi|237879830|gb|ACR32162.1| Response regulator, NarL-family protein [Burkholderia glumae BGR1] Length = 238 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQ 169 + L T + + + + G + P I+ A Sbjct: 101 IVGALQAGATGYLLKERDDLEIALSIRSVLRGGAPIDPFVARYILDSVNAPPPATAPAAP 160 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A+ L+ RE+E L +S+G T+ EI+ +L +SR TV +I +I +K A Sbjct: 161 ASTVTLPSRDGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLA 220 Query: 230 TKTRSGAIAYAVRNNIV 246 ++R+ A+ A + ++ Sbjct: 221 VRSRTQAVFEARAHGLL 237 >gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 230 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143 V+ + + +L P V T + ++ + + ++ Sbjct: 61 VQMPKMDGIEATRRLLADPDAPKVVVLTTFDNDEYVMSAIRAGASGFLLKDVPPEQLLDA 120 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I L + + + ELT REVE L ++ G ++ Sbjct: 121 IRTVHRGDAVIEARATRR---LLQHVGPLLEGSAPEAQLPEELTPREVEVLEAMAYGLSN 177 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA +S TV ++ ++ KT ++ R A+ +A + +V Sbjct: 178 SEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 220 >gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 218 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 2/116 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 YC + + + L + D+L + A + + D LT Sbjct: 105 GYCLKGIEAEHLVLALRSVAAGASWW--DKLGTTEIYAEFSQKNPINTDETKLIANLLTQ 162 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE E L I+ GKT+ EIA +L I+ TV ++ +I++K + R+ A A+R N Sbjct: 163 REQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALRMN 218 >gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9] gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9] Length = 218 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 7/139 (5%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L V + Y + + + ++ + + A Sbjct: 82 LMLTVSEDGEDLAECMRLGARGYLLKNINAEFLLSSIRRAVTGDSVLSPE------MTAK 135 Query: 168 YQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A + D + LT RE E L ++ G ++ EIA L ++ +TV ++ +I+R Sbjct: 136 LVARLRDPRPAASRPDVDSLTPRERETLRHLARGASNKEIARSLDLAESTVKVHVQNILR 195 Query: 227 KTATKTRSGAIAYAVRNNI 245 K +R A +AV N + Sbjct: 196 KLNLSSRVQAAVFAVENEL 214 >gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.] Length = 229 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 12/182 (6%) Query: 73 KLDSI--VSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPP-A 124 LD+I V P ++ + + + + + + T++ HT E I Sbjct: 49 GLDAIRCVKKHNPAIILLDLNMPKMNGISVIKEIKSSCPATKIIVLTMHTKEEYIIEAFK 108 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 YC + + I + + + + + +I L + D W Sbjct: 109 SGAEGYCLKSSSQEELLIAINAVLSGKKYVCPEISGKI-LEGYIEGQKTIKQDSSWDM-- 165 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L + EG + EIA L IS TV + A+IM K T S AY++ Sbjct: 166 -LTQREKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIERG 224 Query: 245 IV 246 +V Sbjct: 225 LV 226 >gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 9/142 (6%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + H E + R L + + + +G + + +L A+ Sbjct: 78 IIILTMHDDEEYLFHVLKKGARGYVLKNSPDEQLVSAIRMVHQGGVYIHPKL------AS 131 Query: 168 YQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 F S D ++ L+ REVE L +++G + EIA +L IS TV + A I Sbjct: 132 SLVREFVSQDQQADENNPYQLLSTREVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKI 191 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 M K K+R + YA++ ++ Sbjct: 192 MEKLNLKSRPELVEYAIKKKLL 213 >gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELT 187 L +G + + L+AY + + K + D K +L+ Sbjct: 109 ALILPISYGPNVLGYAGISWHQDGCSGINHPLVQSLSAYCSMLGKVLATDSLRPKTVKLS 168 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 REVE + +S G++ E+A +GIS TV +YI S ++K + R+ +A A+R I+ Sbjct: 169 RREVEVMQRMSWGESVKEMASWMGISEFTVQDYIKSALKKLGVQNRAQGVADAIRQRII 227 >gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + R L + + G LL P + +RL + Sbjct: 125 FSAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRD----------- 173 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D L RE E L I++G T+ +I LG+S TV NY++SI+ K + Sbjct: 174 GPSEDPAMAT---LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLAS 230 Query: 233 RSGAIAYAVRN 243 R+ A Y ++ Sbjct: 231 RTQAAVYLMKQ 241 >gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 218 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 4/147 (2%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 +R + V ++ + + + + + L + + R Sbjct: 71 QARRRARSMRVLVLSMYDDDAYVVEALRGGAMAYVLKGSPVEELVQAL----EALYQGRR 126 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + L+ ++ LT RE + L +EG TS EIA L IS TV Sbjct: 127 YLSAPLSERLLAQAEAPQDLRDPYETLTDRERQILHLTAEGYTSREIAERLFISPRTVEK 186 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++M K +++ I YAV+ +V Sbjct: 187 HRENLMAKLDIHSQAELIHYAVQRGLV 213 >gi|256395828|ref|YP_003117392.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362054|gb|ACU75551.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 258 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G ++ EIA L +S TV ++ M K +R+ A+ A + + Sbjct: 189 LTTRETDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRAQAVVLAYESGL 248 Query: 246 V 246 V Sbjct: 249 V 249 >gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC BAA-2158] Length = 240 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E L W +EGKTS EI++IL IS+NTVN + + ++ ++ +YA ++ Sbjct: 181 SERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|282899743|ref|ZP_06307706.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] gi|281195358|gb|EFA70292.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] Length = 238 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I +G ++ +IA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 176 PLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 235 Query: 245 IV 246 +V Sbjct: 236 LV 237 >gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] Length = 234 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D L V +R G LL P L +R A + Sbjct: 93 VYAALSAGAAGFLLKDTTPEHLVAAVRLVRSGDALLAPAITRRLVERFARQDAPATPRHR 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE + L ++ G + E+A LG+S TV ++A I+ K + Sbjct: 153 DLAA----------LTPRERDVLRLLAGGLNNAELADHLGLSEATVKTHVARILAKLGLR 202 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A R +V Sbjct: 203 DRVQAVIVAYRTGLV 217 >gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 215 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D L + + G LL P L+E L+ Sbjct: 90 VFQAMRVGAKGYLLKDTEPDELMLAIRSVYKGQTLLGPG--------LFEKALIPIPVPV 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +LT RE++ L I+ G + EIA L +S NTV NY+ +I+ + + + Sbjct: 142 PSVEPPPELA---QLTPRELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLR 198 Query: 232 TRSGAIAYA 240 R+ A +A Sbjct: 199 DRTQAALFA 207 >gi|256389850|ref|YP_003111414.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356076|gb|ACU69573.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 229 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE + L I+ G ++ EIA L + TV ++I I KT + R+ A+ YA + Sbjct: 163 DLSPREADVLRLIAAGHSNREIAKKLFVGEATVKSHINRIFTKTGCRDRAQAVQYAFTHG 222 >gi|196228529|ref|ZP_03127396.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196227932|gb|EDY22435.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 P + + V G +L + I++ + + +Y + ++ Sbjct: 78 PGARVLMLSALDGDEHIHLAVRAGAAGYVLKSAERGEIIQ-AIRAVHGGKSYFSPGLEAL 136 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + E++ RE E L + G+ + EI LGIS TV ++A I +K + R+ A Sbjct: 137 LHDRARKVEISPREREVLVRAAAGERNKEIGDHLGISEATVKVFMARIFQKLDARDRAHA 196 Query: 237 IAYAVRNNIV 246 + A++ I+ Sbjct: 197 VVIAIKRGII 206 >gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] Length = 216 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 146 LLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 LL + I LW +L Y + LT REVE L ++ G + Sbjct: 117 LLSKGIKAIFDGELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNS 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EIA L +S +T+ +I +I +K R A+ +A N Sbjct: 177 EIASSLNLSPHTIKTHIYNIFKKINASNRLQAVNWAQEN 215 >gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 221 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D ELT RE E L I+EG+++ EI L IS TV ++++++ K + R+ A R Sbjct: 155 DEELTEREKEVLLLIAEGRSNKEIGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHR 214 Query: 243 NN 244 Sbjct: 215 KG 216 >gi|21220239|ref|NP_626018.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256788647|ref|ZP_05527078.1| two-component system response regulator [Streptomyces lividans TK24] gi|289772542|ref|ZP_06531920.1| two-component system response regulator [Streptomyces lividans TK24] gi|5531455|emb|CAB50960.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289702741|gb|EFD70170.1| two-component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 2/158 (1%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 M E P + + L E + L + + + Sbjct: 60 RMDGVEATSRLTASDSPPRVLILTTYDLDEYVFGALRAGASGFLLKDASRDRLLEAIRVV 119 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 G +L + L A LT RE E L ++ G ++ EIA Sbjct: 120 HAGEALLSPSITR--RLIEDYATRAAPVRPREAVLAGLTPREREILLLVARGLSNPEIAA 177 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ TV +++ S+ K + R+ A+ +A N IV Sbjct: 178 RLVVTEATVKSHVGSMFAKLHLRDRAQAVVFAYENAIV 215 >gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + G R L V + G LL P + L++ + + Sbjct: 93 VAQAIRAGASGFIGKGIRAEDLLDAVRTVAGGNSLLSP---------IATSALISRFL-S 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D G +LT RE+E +T ++ G ++DEIA L IS T ++ M K + Sbjct: 143 TPSRADSTSGIFGQLTPRELEVVTLVALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVR 202 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 203 DRAQLVVLAYQCGVV 217 >gi|295130489|ref|YP_003581152.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375667|gb|ADD99521.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313772396|gb|EFS38362.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313809915|gb|EFS47636.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313830246|gb|EFS67960.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834047|gb|EFS71761.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314973252|gb|EFT17348.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314975927|gb|EFT20022.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984055|gb|EFT28147.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315096164|gb|EFT68140.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327326081|gb|EGE67871.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327446037|gb|EGE92691.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327447984|gb|EGE94638.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328760418|gb|EGF73986.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 237 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + +Q V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|15599074|ref|NP_252568.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAO1] gi|107103394|ref|ZP_01367312.1| hypothetical protein PaerPA_01004464 [Pseudomonas aeruginosa PACS2] gi|116051915|ref|YP_789242.1| transcriptional regulator NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|218889841|ref|YP_002438705.1| transcriptional regulator NarL [Pseudomonas aeruginosa LESB58] gi|254236778|ref|ZP_04930101.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|254242570|ref|ZP_04935892.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|296387604|ref|ZP_06877079.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAb1] gi|313109299|ref|ZP_07795267.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] gi|9950059|gb|AAG07266.1|AE004805_4 two-component response regulator NarL [Pseudomonas aeruginosa PAO1] gi|115587136|gb|ABJ13151.1| putative nitrate/nitrite response regulator; NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|126168709|gb|EAZ54220.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|126195948|gb|EAZ60011.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|218770064|emb|CAW25826.1| two-component response regulator NarL [Pseudomonas aeruginosa LESB58] gi|310881769|gb|EFQ40363.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] Length = 219 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + L D L + + G M L P+ IL L Sbjct: 100 VVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALR----------- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D ELT RE + L I+ G ++ IA L I+ TV ++ ++ K + Sbjct: 149 ----GDDRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMR 204 Query: 232 TRSGAIAYAVRNNIV 246 +R A +AV N++V Sbjct: 205 SRVEAAVWAVENDLV 219 >gi|319441505|ref|ZP_07990661.1| LuxR family two component transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 232 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 2/137 (1%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG-RIILRDRLWEIGLLAAYQA 170 V L G + V + G L P R ++ + A Sbjct: 92 VVSALRAGAGGFIGKGAEPEDIVRAVQAVHAGDSLFSPAATRSLITRYIDVPDATGQGGA 151 Query: 171 NMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + KD LTGRE E L + +G ++ EIA IS +T ++ IM K Sbjct: 152 SSGGTVSEDAAKDLARLTGREQEVLLLVGQGLSNQEIAEKFFISPHTAKTHVNRIMSKIN 211 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ + A + ++ Sbjct: 212 AHDRAQLVILAYESGLL 228 >gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+QA + D + Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|115371976|ref|ZP_01459288.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115370941|gb|EAU69864.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 209 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 9/158 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + L D + E P+ + + + G +L Sbjct: 58 DLGLPVMDGMSALRAIRREF--------PDARILVLTLRQGDEDVHQAIQAGARGYLLKG 109 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 G IL D + + + A + V D LT RE + L ++ G+++ +IA Sbjct: 110 ATGPEIL-DAIRAVHRGLRHVAPEAAAMLVERVGDSPLTERERQTLEAMARGRSNKQIAQ 168 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++ I+ K R+ A+ A+R ++ Sbjct: 169 ELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGLI 206 >gi|152984552|ref|YP_001346614.1| transcriptional regulator NarL [Pseudomonas aeruginosa PA7] gi|150959710|gb|ABR81735.1| two-component response regulator NarL [Pseudomonas aeruginosa PA7] Length = 219 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + L D L + + G M L P+ IL L Sbjct: 100 VVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALR----------- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D ELT RE + L I+ G ++ IA L I+ TV ++ ++ K + Sbjct: 149 ----GDDRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMR 204 Query: 232 TRSGAIAYAVRNNIV 246 +R A +AV N++V Sbjct: 205 SRVEAAVWAVENDLV 219 >gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22] gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 9/193 (4%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVF 113 + V + ++ +V P ++ + + D L L F Sbjct: 28 MEVVAEAADGREAVDLVRVHRPDVVLMDIRMPGTDGLTATSVICADEELADTRVLILTTF 87 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 + + + G+ + ++ + + A Sbjct: 88 EIDEYVAQALRSGASGFLGKDVTADLLLDGIRTVAAGDTLLSPAATRTL-ITRFLAAPAP 146 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S + LT RE E ++ +EG ++DEIA L +S TV ++ M K + R Sbjct: 147 GSRLTTPERLTTLTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDR 206 Query: 234 SGAIAYAVRNNIV 246 + + A ++ +V Sbjct: 207 AQLVVMAYQSGLV 219 >gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 219 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 12/158 (7%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 M E + ++ + V + + L V R G + Sbjct: 68 TRMIAGELEGTRVLVLSASGEHDDVLEAVKAGASGYLVKSASAEELVEAVNRTAAGDAVF 127 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + +L Y+ +V +LT RE E L +++G T+ +IA Sbjct: 128 TSGLAGL---------VLGEYRRMAAAPDEVDRP---QLTDRETEVLRLVAKGLTARQIA 175 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV N++ S +RK R YA+ + + Sbjct: 176 TRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 213 >gi|111023439|ref|YP_706411.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822969|gb|ABG98253.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 216 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + P + + + + + L Sbjct: 46 DVVLMDVRMPEMNGLDAARIIL-SAGFDPPVRVLMLTTFDVDDYVYEALSIGASGFMLKD 104 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + + G +L + L A + + LT RE E L Sbjct: 105 APAEELIRAVRVVADGEALLAPTVTR--RLIADVTSRRSTARRKPAALSALTPREREVLE 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L ++ TV ++ ++ K + R+ A+ A + +V Sbjct: 163 LIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 213 >gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 2/158 (1%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + L L + T + + + A + + + Sbjct: 63 GIEATRLIAADEDLAGVKVLVLTTYETDEHIVEALRAGASGFLVKDIRPAELLDAIRTVA 122 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 ++ L+A + + G EL+ RE + L ++ G + EIA Sbjct: 123 AGESLLSPG--PTSRLIARFLLAPNTAPKPALGGPSELSERERQVLALVARGLNNAEIAD 180 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LG+S T +++ IM K + R+ + A + +V Sbjct: 181 ALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 218 >gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 249 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D +L + + G ++ P L +++ + A Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAA 166 Query: 172 MFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + ELT RE E L I+ G ++ EIA L IS TV ++A Sbjct: 167 PVSATSASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAH 226 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K + R A+ +A N++V Sbjct: 227 ILSKINARDRVQAVVFAYENHLV 249 >gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 247 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 21/194 (10%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 52 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGAIAYAVRNN 244 +T A+ A+ Sbjct: 232 RTAKQAVYKAINMG 245 >gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+QA + D + Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 7/176 (3%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E++ +V D + + + + + ++ + F + + Sbjct: 45 ERRRPDLVLMDIRMPRMDGLEATRRLRAVTGVEV---IVVTTFDLDEYVLDALRAGAVGF 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 RI + + +I + + L A ++ D ELT RE Sbjct: 102 LVKDSAPERIVDAVRSVARGDALISPEVTRRL-LEQFVSAAPARAGDATLA---ELTPRE 157 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L I+ G+++ EIA +L + +TV ++ ++ K +R A+ YA +V Sbjct: 158 RDVLLGIAAGRSNAEIAALLQLEESTVKGHVGRMLAKLGLHSRVQAVIYAYETGLV 213 >gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 7/168 (4%) Query: 83 PFDLVRCMALSEKDKYYNVL---QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139 P ++ + + D E+ V ++ + + F R Sbjct: 46 PDVVLMDLKMPGMDGLAATRMISAEMPEVKVVVLTASEDDEDLFEAVKSGALGYMFKDVR 105 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 LL R + GL M K + LT RE E L + + Sbjct: 106 SDQFFELLEAASRGEPA---FTPGLARKLLREMSKPAGRAEREPEVLTEREQEILELLVQ 162 Query: 200 GKT-SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G T + E+A L +S NTV ++ +I+ K + R+ +AYA+++ +V Sbjct: 163 GVTSNKELAERLILSENTVKYHLRNILDKLHLQNRTQVVAYALQHGLV 210 >gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 276 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 84/250 (33%), Gaps = 18/250 (7%) Query: 13 NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72 + + + V H +L D + +G HF L D Sbjct: 17 SGTRRRPMNDVKHYYLTEELAQEFTGADREEQLFAALTKAAGRMGFDHFALAF-DRRGTG 75 Query: 73 KLDSIVSSDWPFDLVRCM---ALSEKDKYYNVLQRP--------TELFCPVFHTLPENIT 121 + SI+ ++P + LS D +R + + P+ + ++ Sbjct: 76 EPASILVHNYPDAWAKVYVGFDLSGTDPIRRASERSLTGFEWRHVDRYIPLSRGDRQLLS 135 Query: 122 PP--AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSY 176 +G+ + + I D L +G +A A Sbjct: 136 VARDSGVGDGFTVPRHLPGEASGTCSFAVRPHADIPADMLHAAEILGAIAIASARELIGS 195 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + LT R+ EC+ W + GKT+ EIA ILGIS TV ++ + + RS Sbjct: 196 SPLRPRPI-LTERQRECVLWSARGKTAGEIADILGISEETVVRHLKMARERYSVHCRSML 254 Query: 237 IAYAVRNNIV 246 I A+ + ++ Sbjct: 255 ILCALFDGLI 264 >gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 261 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 134 TFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + D R+ + + R I L AA + ++ L+ RE Sbjct: 124 SIDSRRLAEAIRRAHSERRYIDPALAALTARPKRTAAPKGDLAHDSPPAPRGAMPLSRRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L ++EG + IA +L +S TV ++ SI+RK + + R+ A+ A R+ I+ Sbjct: 184 YQVLQLVAEGLENSAIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 239 >gi|302518567|ref|ZP_07270909.1| two-component system regulator [Streptomyces sp. SPB78] gi|302427462|gb|EFK99277.1| two-component system regulator [Streptomyces sp. SPB78] Length = 226 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ +G Sbjct: 92 HADVLEAVKSGATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLV------LGEYRRL 145 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 146 AAEPEPKTSGGGPETPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 205 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 206 QLHNRVELVRYAIEQGL 222 >gi|257069188|ref|YP_003155443.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560006|gb|ACU85853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 3/156 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 A +E + P + F + + + + + + Sbjct: 72 ATAEILAQAPEGRAPKIIVLTTFDLDEYVVAAIRAGASGFLLKDAQPEDLLGAIRTVHSG 131 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I + L A + D ++ LT RE E LT + G ++ EI L Sbjct: 132 DAVIAPSATRRL-LERVVAAPEPEQQDASVLEN--LTEREREVLTLMGRGFSNQEIGAEL 188 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ TV ++ ++ K + R A+ A +V Sbjct: 189 FVAEATVKTHVGRVLAKLGARDRVQAVIIAFETGLV 224 >gi|254382674|ref|ZP_04998032.1| two component system response regulator [Streptomyces sp. Mg1] gi|194341577|gb|EDX22543.1| two component system response regulator [Streptomyces sp. Mg1] Length = 233 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 13/195 (6%) Query: 57 GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116 GA + L R E+ D +V D +A + L + F Sbjct: 42 GAQAYALAR-----ERGAD-VVLMDIRMPGTDGLAATRMISADPELAGVRVVMLTTFEVD 95 Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN----- 171 + + + + + + + ++ GL+A + A Sbjct: 96 EYVVQSLRAGASGFLGKGAEPEELLNAIRVAAAGEALLSPAATK--GLIATFLAQGGREE 153 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + H + LT RE E L ++ G ++D IA L +S TV ++ M K + Sbjct: 154 RAAATGAHAQQLAALTVREREVLVHVAAGLSNDGIAGRLEVSPLTVKTHVNRAMAKLGAR 213 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 214 DRAQLVVIAYESGLV 228 >gi|124022269|ref|YP_001016576.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962555|gb|ABM77311.1| possible DNA-binding response regulator [Prochlorococcus marinus str. MIT 9303] Length = 241 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 30/240 (12%) Query: 18 QRTSFVSH-LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76 Q+TS SH L RS + SW L VGA+ +++ L Sbjct: 11 QKTSQQSHPLLRRSRTVVATADRVLITSWVGWFDCLGPLVGAAT--------GEDETLSC 62 Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF----------CPVFHTLPENITPPAGM 126 + SS+ DL+ C L E +++++ +L PV TL + I Sbjct: 63 LKSSN--ADLLICTDLLESGNGPSLVRKAKQLKPDLKALMLIQRPVLRTLLDAIEAHC-- 118 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + C+ +G L I D + ++A + + L Sbjct: 119 -DGLCA------HELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKTSSQIDNL 171 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE + L I +G ++ IA L +S +TV +++ ++++K + R+ A+ A R+ +V Sbjct: 172 SLREGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGLV 231 >gi|86356681|ref|YP_468573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280783|gb|ABC89846.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 86 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 37/60 (61%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E + W+++GKT+ EI ILGIS TVN +I++ K + +A A+RN I+ Sbjct: 26 TPREREIIGWMAQGKTAAEIGTILGISPITVNTHISNAKAKLGVFKETALVAAALRNGII 85 >gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 361 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ A A+ Sbjct: 292 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGVETRTAAAGIAMAR 351 >gi|320011249|gb|ADW06099.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 230 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T LT V G + P ++ L E LA+ Sbjct: 98 HADVLEAVKSGATGYLLKSASTQELTDAVRATAAGDPVFTPGLAGLV---LGEYRRLASD 154 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 155 PAPAAP----DQPKVPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 210 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 211 QLHNRVELVRYAIEAGL 227 >gi|238782956|ref|ZP_04626984.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] gi|238716159|gb|EEQ08143.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] Length = 244 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 26/176 (14%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITPPAGMDNRYCS----- 132 PF + ++ K + E V H N+T + M ++ C Sbjct: 78 PFSWDENIMINSGLKLPKIFDVAKEYDVINGHTFVLHDQYYNLTILSLMTDKDCDEDIED 137 Query: 133 -LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGRE 190 + D A I++ LML+ K L ++ ++ +S D G++ T RE Sbjct: 138 KIANDKANIQMLLMLIHEK--------------LTSFYNDLNRSSDFCKMGRNEIFTKRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + W S GK+ EIA+ILGI TV +++ ++RK AI+ AV ++ Sbjct: 184 NEIIYWASVGKSYPEIALILGIKPTTVKHHMGKVVRKLGVTNAKHAISLAVELQLI 239 >gi|229589665|ref|YP_002871784.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361531|emb|CAY48407.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 504 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187 Y + ++ + + L +++D W L AN S + +LT Sbjct: 378 YLLVMMNITERKRSELELVAAIEEVMQDASWFSQTLIEKLANAKSVNSPNQPNISFTDLT 437 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + L I EG EIA+ L ++ NTV N++A++ K +RS AI +A + Sbjct: 438 ARERDVLGLICEGLADKEIALRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 495 >gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans] Length = 210 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWIS 198 + + ++ L I R I L Y H K+ L+ RE E L W+S Sbjct: 101 VLLSVIGLKDSEHDIENHRQKFISFLTNLHQKTLNLYSQHQQKKNVFLSPREREILKWVS 160 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT E+++IL I+ TV ++ ++M+K A+ ++ Sbjct: 161 AGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGAELQLL 208 >gi|2765450|emb|CAA75536.1| nitrate/nitrite regulatory protein [Pseudomonas aeruginosa PAO1] Length = 216 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + L D L + + G M L P+ IL L Sbjct: 97 VVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALR----------- 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D ELT RE + L I+ G ++ IA L I+ TV ++ ++ K + Sbjct: 146 ----GDDRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMR 201 Query: 232 TRSGAIAYAVRNNIV 246 +R A +AV N++V Sbjct: 202 SRVEAAVWAVENDLV 216 >gi|111023025|ref|YP_705997.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822555|gb|ABG97839.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R I E + + + +S + LT RE+E L +++G ++ +I L Sbjct: 134 RAIRAVSRGESAFDSRSASAVIRSLNGQTTPRDGLTERELEVLQLLAKGLSNAKIGERLF 193 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++++IMRK R+ A+ A + ++ Sbjct: 194 ISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228 >gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 254 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRI--ILRDR---LWEIGLLAAYQANM---FKSYDVHWGKD 183 S+ + R + G+ +L+D L + L++ S ++ Sbjct: 130 SVPIHLPRGGFASLTGLRTGKAHSVLQDAQQTLSDFSLISHALQEAAYPLFSKELRTYPH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL W ++G T+ EIA L S V ++AS M K K R A+ A Sbjct: 190 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] Length = 232 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D+ L V G L P L ++ E + +A Sbjct: 90 VHEALRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSP----PLSEKAIEAYMEKTAEAT 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 Y+ LT RE E L +S+G T EIA L IS TV + A++MRK + Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198 Query: 232 TRSGAIAYAVRNNIV 246 ++ + YA++ I+ Sbjct: 199 NQTQLLRYALQRGII 213 >gi|324997378|ref|ZP_08118490.1| putative two-component system response regulator [Pseudonocardia sp. P1] Length = 239 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 14/188 (7%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP--------VFHTLPE 118 + + S P ++ + + D +R L P F Sbjct: 51 EASDGGAAAELAESLTPDVVLMDVRMPGTDG-IEGTRRIRALRDPGIRVLVVTTFDLDRH 109 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + + + +++ + + + + + + + Sbjct: 110 VYDALRAGASGFVLKDVEPEDLQVAVRTVHAGHELFAPSVTRRL-----VGSFVPADPEP 164 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G LT RE + L ++ G ++ EIA L + TV ++++++ K + R + Sbjct: 165 GAGPAGALTERERQVLGLVAAGLSNAEIAARLVLGGTTVKTHVSNLLTKLDLRDRVQLVV 224 Query: 239 YAVRNNIV 246 +A + +V Sbjct: 225 FAYEHGLV 232 >gi|269956981|ref|YP_003326770.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305662|gb|ACZ31212.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 937 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 13/117 (11%) Query: 141 RIGLMLLFPKGRIILRDRLWEI---------GLLAAYQANMFKSYDVHWGKDF----ELT 187 R G L+ R RDRL GL+ A + + + G LT Sbjct: 821 RDGEALVDAGDRAAARDRLEAAVAEAEHIGAGLVTAKARALLRRAGLTAGGRVTAPDALT 880 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE + L ++EG T+ +IA L IS TV+ ++++I+RK +R+ A VR Sbjct: 881 AREEQVLALVAEGLTNGQIAARLFISVKTVSVHVSAILRKLGVSSRTEAALKGVRKG 937 >gi|182439137|ref|YP_001826856.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467653|dbj|BAG22173.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 244 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 7/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 66 DVVLMDIRMPGTDGLAATRMISADPELSAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGA 125 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190 + + + + ++ GL+A + A S + ++ LTGRE Sbjct: 126 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSGEGPDSAEYAERLAALTGRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++D IA L +S TV ++ M K + R+ + A + +V Sbjct: 184 REVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 239 >gi|312198139|ref|YP_004018200.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229475|gb|ADP82330.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 227 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 9/139 (6%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 E V L + G +L + + G LL P L+ Sbjct: 90 ETDELVLAALRAGASGYLGKGVAPNTLLDAIRTVAAGESLLSPTA---------TTALVR 140 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + A+ D +LT RE E ++ G +++EIA +L IS T ++ M Sbjct: 141 RFLASPQPRLDARLPAMTDLTAREREITVLVARGLSNEEIAELLVISPATAKTHVNRAMT 200 Query: 227 KTATKTRSGAIAYAVRNNI 245 K + R+ + +A N + Sbjct: 201 KVHARDRAQLVVFAYENGL 219 >gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 254 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+QA + D + Sbjct: 130 TVPLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 D +LT RE E L ++EG ++ EIA L I TV +++SI+ K + R AI + Sbjct: 149 ESADADLTPREREVLAALAEGSSNAEIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVW 208 Query: 240 AVRNN 244 A +++ Sbjct: 209 AYQHH 213 >gi|254391866|ref|ZP_05007060.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294816214|ref|ZP_06774857.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326444547|ref|ZP_08219281.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|197705547|gb|EDY51359.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328813|gb|EFG10456.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 3/159 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ ++ + L F + + + L ++ Sbjct: 80 GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 139 Query: 151 GRIILR---DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 ++ RL + + + G LT RE E I+ G + IA Sbjct: 140 EAVVAPRLLTRLISSYVTVPQRPATPAAGTRPTGVPDGLTPREREVWRLIAAGLDNTGIA 199 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IS +TV N+I ++ K + R+ A+ A +V Sbjct: 200 AEMFISPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 238 >gi|310824729|ref|YP_003957087.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309397801|gb|ADO75260.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 200 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 9/158 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + L D + E P+ + + + G +L Sbjct: 49 DLGLPVMDGMSALRAIRREF--------PDARILVLTLRQGDEDVHQAIQAGARGYLLKG 100 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 G IL D + + + A + V D LT RE + L ++ G+++ +IA Sbjct: 101 ATGPEIL-DAIRAVHRGLRHVAPEAAAMLVERVGDSPLTERERQTLEAMARGRSNKQIAQ 159 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++ I+ K R+ A+ A+R ++ Sbjct: 160 ELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGLI 197 >gi|262273889|ref|ZP_06051702.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP 101886] gi|262222304|gb|EEY73616.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP 101886] Length = 224 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 25/188 (13%) Query: 58 ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 +S +L+ F+ + + S PF AL VF Sbjct: 53 SSGLVLIDLSAFEGDTVGFVKQSLAPFSEQHVFALFNAHDLSAKELASWPFIKGVFKKED 112 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 + G++ + + R +L E L+ YQ N Sbjct: 113 DLEHLCHGIEK------------------MLSGEYWLPRQKLAE--LIHYYQQNNNNID- 151 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT RE + L + G ++ EIA L +S +TV +++ +I +K K R A+ Sbjct: 152 ---YSEICLTNREQQILRKLVTGASNSEIADSLFVSEHTVKSHLYNIFKKINVKNRVQAV 208 Query: 238 AYAVRNNI 245 +A +NN+ Sbjct: 209 FWA-KNNL 215 >gi|302522327|ref|ZP_07274669.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302431222|gb|EFL03038.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 265 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G ++ +IA L +S TV +I ++ K + R+ A+ YA + I Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256 Query: 246 V 246 V Sbjct: 257 V 257 >gi|331696674|ref|YP_004332913.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951363|gb|AEA25060.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 7/173 (4%) Query: 77 IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V+ P ++ + + D +L RP V T + + Sbjct: 49 LVARLRPAVVLMDVRMPTVDGITATRALLARPDPPRVLVLTTFGNDGHVYEALRAGATGF 108 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 AR ++ + + L + A + LT RE E Sbjct: 109 LLKRARPAD---IVSAVRTVASGESLLFPAAVRELVAAVGPDTGDRLAGR-GLTDRESEV 164 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ EIA L + TV ++ +++ K + R+ A+ A + V Sbjct: 165 LRGMARGLSNAEIAAELVLGVETVKTHVGNVLAKLGVRDRTQAVVAAFESGFV 217 >gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] Length = 921 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE + L I+EG+ + EIA L IS TV +I +I K +R+ A++ A+ Sbjct: 859 ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918 Query: 245 IV 246 ++ Sbjct: 919 LL 920 >gi|218437802|ref|YP_002376131.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218170530|gb|ACK69263.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 228 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K+ +LT RE E L ++ +G ++++IA L I+ TV ++ +I K K R+ AI A Sbjct: 158 DKELDLTKREKEVLQYLIQGLSNEQIAKQLYITVATVKAHLTAIFNKLGVKNRTQAIVAA 217 Query: 241 VRNN 244 ++ N Sbjct: 218 LKMN 221 >gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 218 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 9/161 (5%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 +++R + + +L E V + T V R G Sbjct: 65 EVIRGLRAAWPQVRVLMLSASGEQ-QGVLDAVKAGATGYLLKSAALAEFLDAVRRTAAGE 123 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + P ++ L E LAA + LT RE E L +++G + Sbjct: 124 PVFTPGLAGLV---LGEYRRLAAAGG-----PEPGQDTAPRLTERETEVLRLVAKGMSYK 175 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +IA LG+S TV N++ + + K R YA+ + Sbjct: 176 QIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 216 >gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 207 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L I++G+++ EIA L I+ TV +++S++ K + R+ A YA++ Sbjct: 142 VELTPRESEVLICITQGRSNREIAEQLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQR 201 Query: 244 NIV 246 +V Sbjct: 202 GLV 204 >gi|289768636|ref|ZP_06528014.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698835|gb|EFD66264.1| two-component system response regulator [Streptomyces lividans TK24] Length = 227 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 9/177 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNR 129 +V+ P ++ + + D + T++ + E++ P Sbjct: 49 RVVAELAPDVVLMDLRMPRCDGVEATRRIRSEHPGTQVVVLTTYADDESLFPALHAGARG 108 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + I + + + L + + LT R Sbjct: 109 YLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRR---LLEWLSESEPRPTGPPEPPDGLTTR 165 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L I+EG T+ +IA L +S TV +I ++ KT K R+ A+ YA +V Sbjct: 166 ETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 222 >gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 203 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTEL 108 +++Y+ + + + Q+ + + P ++ + + E D Y V + Sbjct: 13 VSDYLELRGYQVTIAENGQKALEK--LEEEVPELIICDIMMPEMDGYTLVKLIRENSQFG 70 Query: 109 FCPVFHTL-----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 + PV + + + Y FD + + + + R R IG Sbjct: 71 WIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTERLTRYRKSVIG 130 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 S + ELT E++ + +++GK + EI+ I+ +S+ T+ ++I++ Sbjct: 131 ----------TSPKIKVRSGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISN 180 Query: 224 IMRKTATKTRSGAIAYAVR 242 ++ KT R+ +A+ Sbjct: 181 MLGKTGLHNRTQLARWALE 199 >gi|284034471|ref|YP_003384402.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283813764|gb|ADB35603.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 242 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 10/172 (5%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCSL 133 P +V + + D Q + L + T + + Sbjct: 61 HPDVVVMDIQMPGMDGLTATAQICADPDLRASRVLILTTYETDEYVAQALRAGASGFIGK 120 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 D + + + ++ L+A + A + + LT RE E Sbjct: 121 GIDADGLIDAVRTIADGDALLSPAATR--SLVARFLATPVDTAPRDVERLVALTPREREM 178 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + ++ G ++ EIA + +S TV ++ M K + R+ +A A R + Sbjct: 179 VALVATGLSNLEIADRMYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGL 230 >gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B] gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B] Length = 220 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 14/154 (9%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--------D 157 E + T P + +L + G +L +LR D Sbjct: 63 REALEQIRETHPNLAVLMLTVSEDCEALGECLKLGARGYLLKKIDQDFLLRSIRAAYNGD 122 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILG 211 + ++ + + + + + + LT RE + L W++ G ++ EIA L Sbjct: 123 SVISPQMMTKFVNRLSEPPEAARTRQAQGTDPTVLTRRERQTLAWLARGVSNKEIARALN 182 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ +TV ++ SI+RK +R A YA+ + I Sbjct: 183 LAESTVKVHVQSILRKLNLSSRVQAAIYAIEHKI 216 >gi|302869854|ref|YP_003838491.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302572713|gb|ADL48915.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 10/147 (6%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + L V + I Y + T + + + + Sbjct: 86 PQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELTGAIRRVADGDAVFSP------ 139 Query: 163 GLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D EL T RE E L ++ G EIA L IS TV Sbjct: 140 -RLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVET 198 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 199 HVSNVLRKLQMSNRYELSRWAADRRLV 225 >gi|319441809|ref|ZP_07990965.1| putative NarL family two-component response regulator [Corynebacterium variabile DSM 44702] Length = 228 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 49/134 (36%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D L V G LL P L + + Sbjct: 94 VFEALQMGCSGFLLKDAPAGELVRAVRLAVTGEALLAPSVTKRLIEDAVAKRPAGRIRGG 153 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L I+ G+++ EIA L IS TV ++ +++K + + Sbjct: 154 ESAGEQAALKALRSLTPREHEILEQIATGRSNQEIAGTLFISEETVKTHVRKVLQKLSLR 213 Query: 232 TRSGAIAYAVRNNI 245 R A+ +A N + Sbjct: 214 DRVQAVVFAYENGV 227 >gi|302865580|ref|YP_003834217.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568439|gb|ADL44641.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 220 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 13/218 (5%) Query: 35 RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R++ +D + AL + VG + + +EQ+ D IV D Sbjct: 5 RVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGDGGSALSVVREQRPD-IVLMDVRMPGGD 63 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + + ++L + F + +R + + Sbjct: 64 GLEATRRILTDSMLDGVQVVMLTTFDDDEYLFEAIRAGAAGFLLKDTPPDALRDAVRTVA 123 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 D L + A +S G+ LT RE + L + G+++ EI Sbjct: 124 GG------DALLSPAVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQ 177 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +T Y++ +++K + R+ + A + +V Sbjct: 178 ALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLV 215 >gi|224283310|ref|ZP_03646632.1| two component transcriptional regulator, LuxR family protein [Bifidobacterium bifidum NCIMB 41171] Length = 240 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166 V + + D +L + + G ++ P L +++ E G Sbjct: 94 VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 153 Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 A ++ D EL T RE E L I+ G ++ EIA L IS T Sbjct: 154 TDGYADGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 213 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++A I+ K + R A+ +A N +V Sbjct: 214 HVAHILAKINARDRVQAVVFAYDNGLV 240 >gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + R L + + G LL P + +RL + Sbjct: 97 FSAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRD----------- 145 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D L RE E L I++G T+ +I LG+S TV NY++SI+ K + Sbjct: 146 GPSEDPAMAT---LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLAS 202 Query: 233 RSGAIAYAVRN 243 R+ A Y ++ Sbjct: 203 RTQAAVYLMKQ 213 >gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 207 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ REV+ L I G + +IA L I+ +TV N++ +I+ K + R+ A A++ Sbjct: 144 DLSAREVQVLGLIVRGLANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRG 203 Query: 245 IV 246 I+ Sbjct: 204 II 205 >gi|307330474|ref|ZP_07609617.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883899|gb|EFN14942.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L E LA Sbjct: 94 HGDVLEAVKSGATGYLLKSASTEELLDAVRRTAAGDPVFTPGLAGLV---LGEYRRLAGE 150 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 151 PAPTAADQPAVP----QLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 206 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 207 QLHNRVELVRYAIERGL 223 >gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2] Length = 260 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 5/142 (3%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + + + ++ ++ + Sbjct: 118 PRIIMLTTFDIDDYVFDAIRAGASGFLLKDAPPNELAEAVRVVASGDGLLAPSVTRRV-- 175 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + A S +LT RE E L ++ G+T+ EIA L I+ TV +++ I Sbjct: 176 IEHFAAGPQTSNAEALP---DLTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRI 232 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ A+ A + +V Sbjct: 233 LYKLDIRDRAQAVIAAYESGLV 254 >gi|312112563|ref|YP_003990879.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217664|gb|ADP76268.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 185 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D LT E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK +R Sbjct: 113 PADRLSNYHPPLTKVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRV 172 Query: 235 GAIAYAVRNNIV 246 GA+ A++ I+ Sbjct: 173 GAVVKAMKLGIL 184 >gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 17/227 (7%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D A + + + M +T+ +G H+ LV + + + S+ D+P D V Sbjct: 10 DFCAVAGAIKDATALSDLMAEITKAMGFRHYALVHH-VDLKPAVRSVHIVDYPQDWVERF 68 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------------ 138 + + + ++I D + ++ Sbjct: 69 QARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIP 128 Query: 139 -RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELTGREVECL 194 + G ++ +L + L+ ++ A + LT R+ EC+ Sbjct: 129 GELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSEWPSLTERQAECV 188 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ GKT EI+ ILGI + TV ++ + R+ A+ Sbjct: 189 ALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRAL 235 >gi|282862196|ref|ZP_06271259.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563221|gb|EFB68760.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 233 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T LT V G + P ++ L E LA+ Sbjct: 101 HADVLEAVKSGATGYLLKSASTQELTDAVRATAAGDPVFTPGLAGLV---LGEYRRLASD 157 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A K +LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 158 PAPAA----SDEPKAPQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 213 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 214 QLHNRVELVRYAIETGL 230 >gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 340 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L W+ +GKT+ +I ILG S T ++ + K +TR+ A A++ Sbjct: 271 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIKR 330 >gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] Length = 237 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 17/205 (8%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP---- 111 +G +LL ++ ++V ++ P + P Sbjct: 30 IGFDGYLLGVTGHGRDIN-QAVVLTNHPPAWRETYTRLGYINTDPTVAHCLGGLFPLEWQ 88 Query: 112 ----VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG------RIILRDRLWE 161 T P S + G++ L R +++ R E Sbjct: 89 ACPITAETAPFWQEASYYGLAHGVSFPLHGVQGEQGILSLSLGRQRQRDYRELMQQRWGE 148 Query: 162 IGLLA-AYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + +L + + D L+ RE+E W + GKT+ EI+ IL S VN Sbjct: 149 LYILRDILLHHCIRLLDEKNKLTATVLSPREIEVCKWFTIGKTTWEISRILNCSEANVNF 208 Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244 + +I RK +R AI A+ + Sbjct: 209 HFKNIRRKFNVSSRGAAIIKAIASG 233 >gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 209 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + + L+ RE+E L +++G ++ EIA L IS TV ++ K R+ A+ Sbjct: 137 MRGTAEETLSVRELEVLALVAKGFSNKEIARELKISEATVKTHLLHTFEKLGVDDRTAAV 196 Query: 238 AYAVRNNIV 246 A+ I+ Sbjct: 197 TVAIERGIL 205 >gi|220925456|ref|YP_002500758.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950063|gb|ACL60455.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 238 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 41/80 (51%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A Y + G + LT REVE L +++ G ++ IA L I+ TV ++ SI+ Sbjct: 149 ATYLLPTPPAAARGLGANETLTEREVEILAYLAAGLSNKLIARRLSIAEATVKIHVKSIL 208 Query: 226 RKTATKTRSGAIAYAVRNNI 245 RKT + R+ A + R+ I Sbjct: 209 RKTGLQNRTQAAIWTHRHGI 228 >gi|107103438|ref|ZP_01367356.1| hypothetical protein PaerPA_01004508 [Pseudomonas aeruginosa PACS2] Length = 906 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172 + G + + +G L L + LR++L Q Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828 Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + G L+GRE+ L I++G ++ EI+ L IS +TV ++ I K Sbjct: 829 LLPEPPSEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 889 VERRTQAVARAKHMGLL 905 >gi|120555999|ref|YP_960350.1| two component LuxR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325848|gb|ABM20163.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 219 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 26/184 (14%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC--------------PVFHTLPENIT 121 + + P ++ + + E D L++ E V L Sbjct: 45 RLATELEPDLILMDLNMPEMDG-IEALRKLREQNVSSRIVMFTVSDQEDDVVAALRAGAD 103 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 D + + + +G M++ + +L + L K Sbjct: 104 GYLLKDMEPEDMIAQLHQAAVGKMVISDRLTTLLAEALRSN-----------KPQQTSRP 152 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L I+EG ++ I L IS TV ++ +++K ++R +AV Sbjct: 153 DFDSLTPREKDILRLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAV 212 Query: 242 RNNI 245 + Sbjct: 213 EEGL 216 >gi|318057517|ref|ZP_07976240.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318081139|ref|ZP_07988471.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 226 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 6/137 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R +G + P ++ +G Sbjct: 92 HADVLEAVKSGATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLV------LGEYRRL 145 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 146 AAEPEPKTSGGGPEAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 205 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 206 QLHNRVELVRYAIEQGL 222 >gi|239816808|ref|YP_002945718.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803385|gb|ACS20452.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 161 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 38/80 (47%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA A + LT RE + + W+S GKT EIA +L IS TV+ ++ + Sbjct: 79 LACRAAVPLHDVPLSDAPLAGLTPREGDVMHWLSRGKTDAEIAALLEISPRTVHKHLEHV 138 Query: 225 MRKTATKTRSGAIAYAVRNN 244 K +TR+ A+ A+ Sbjct: 139 YVKLGVETRTAAVVRALAMG 158 >gi|104780134|ref|YP_606632.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95109121|emb|CAK13818.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 905 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 8/192 (4%) Query: 60 HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119 H LL Q+ L+ ++ + M + + + L + L E Sbjct: 716 HPLLPLHIELQQALLERVLDRPREAEARLRMLVERGQASGGMTLVVSALCQLIGLLLAEG 775 Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLML--LFPKGRIILRDRLWEIGLL---AAYQANMFK 174 P AG R + A+ L LR++L + A A + + Sbjct: 776 REPEAG---RLLPQALEAAQGGALQAFQRLLEDHPTWLREQLAGQAVSPAQAELLARLPE 832 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + G L+GRE+ L I++G ++ +I+ L IS +TV + + I K + R+ Sbjct: 833 APANDLGATEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINGKLGVERRT 892 Query: 235 GAIAYAVRNNIV 246 A+A A ++ Sbjct: 893 QAVARAKSLGLL 904 >gi|330962290|gb|EGH62550.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPVLNGLGAARILQQRMPHLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIAGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L ++ G ++ Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 209 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P +I R G + + L+GRE++ L ++EG T+ Sbjct: 106 LLKDAPAADLIDAVRTAARGGTVLSPVVARRLDERRRTPQPTLSGRELDVLRLVAEGGTN 165 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L +S TV +++ K +R+ A+A A ++ Sbjct: 166 RDIARALFLSEATVKSHLVHAFGKLGVTSRTAAVATARSRGLI 208 >gi|156743691|ref|YP_001433820.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235019|gb|ABU59802.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 14/188 (7%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPE 118 ++V + L +I+ + P +V +A+ +D + +R + + + Sbjct: 33 MIVVATATDGESLLAIIERERPDVVVMDLAMPTRDGLSCLREIRRRGMPVKVVILTAFGD 92 Query: 119 NITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 + + + +L D R I + G+I+ + + + Sbjct: 93 GGALQSAWEMQADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQAADATQAHGQSLLA- 151 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE + L ++EG + +IA L + +TV ++ +I +K R+ A Sbjct: 152 --------RLTQRERDVLRLLAEGMPNAQIAERLVVQESTVKYHLQNIFQKLGVTNRTEA 203 Query: 237 IAYAVRNN 244 R Sbjct: 204 AQVYYREG 211 >gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 31/226 (13%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 ++ + + S+F++ + Q + S++P ++ E ++ Sbjct: 9 IKRKLKGVGDVW-FSYFMMSKNSTSQ-----PYIISNYPEAWMKEYIKKEMFLSDPIIVA 62 Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLT----------------FDVARIRIGLMLLF 148 P + +T A + + S +VA + I L Sbjct: 63 SLARITPFSWDDNDLVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANHLED 122 Query: 149 PKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 +++ ++ +L A +A + ++ L+ RE E L +S Sbjct: 123 ANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINVQDNPPDNSRNALLSPRETEVLFLVSS 182 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 G+T E++ ILGIS TV +I + +RK AI A+ N+ Sbjct: 183 GRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 19/184 (10%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127 F E++ +V D +R + + +N+ R + + T E + Sbjct: 43 FLEKRNADVVLMD-----IRMPVMDGIEGTFNIKVRFPNVRVIILTTFCEEDYIKKSLSF 97 Query: 128 --NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY----DVHWG 181 + Y + D I + + +I ++ +A + AN+FK + Sbjct: 98 GADGYILKSSDAQHIIDTIYAVLDGKVVIDKE-------IALFVANIFKKDLQNVNTTEN 150 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K L+ RE+E I++G ++ +I+ +L IS TV NYI++I+ K K R+ Y + Sbjct: 151 KLKNLSERELEIARLIAQGYSNKDISKMLFISEGTVRNYISTILEKLELKNRTQIAIYYL 210 Query: 242 RNNI 245 N++ Sbjct: 211 SNSL 214 >gi|288923880|ref|ZP_06417961.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344773|gb|EFC79221.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 15/223 (6%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + + E + F +V E+ L P ++ + Sbjct: 1 MSIRLLIVDDQELVRTGLRLILEAL--DDFEVVGEAGDGEEALAR-AEELRPDVVLLDIR 57 Query: 92 LSEKDKYYN--------VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + D ++ P L F + R+ Sbjct: 58 MPRMDGVETTARLTGGGLIPAPRVLILTTFDLDEYVFGALRAGAAGFLLKDASRERLVEA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + +L ++ L+ + A G LT RE E L ++ G ++ Sbjct: 118 IRVLHAGDALLSPAVTRR--LVETFAARTRPP--TPPGLLDLLTPREREVLVLVARGLSN 173 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ TV +++ +I+ K + R A+ A N +V Sbjct: 174 TEIAGRLVVTEATVKSHVGAILTKLGLRDRVQAVVLAYENGVV 216 >gi|312960102|ref|ZP_07774614.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285596|gb|EFQ64165.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 498 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187 Y + ++ + + L +++D W L AN S ++ +LT Sbjct: 370 YLLVLMNITERKRSELELVAAIEEVMQDASWFSQTLIEKLANAKSVNSPNLPNISYTDLT 429 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A + Sbjct: 430 ARERDVLGLICEGLADKEIASRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 487 >gi|114217274|dbj|BAF31200.1| AHL-dependent transcriptional regulator [Serratia marcescens] gi|172044716|gb|ACB69923.1| SpnR [Serratia marcescens] Length = 247 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 7/188 (3%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118 L R + FQ D ++ + + PF + L K+ + T Sbjct: 57 LYRTNNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLAKHYNIVNGFTFVL 114 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + + + L +I+L D ++ LA ++ + + + Sbjct: 115 HDHMNNLALLSVIIANNEQGELEARLTSERGAIQILLIDINEQMYRLAGASSSGRQRHHM 174 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 K T RE E L W S GKT EIA I GIS +TV ++ +I+ K AI Sbjct: 175 DMVKPI-FTPRENEVLYWSSMGKTYGEIAAIAGISISTVKFHMGNIVSKLGVSNARQAIR 233 Query: 239 YAVRNNIV 246 V ++ Sbjct: 234 LGVELELI 241 >gi|227547703|ref|ZP_03977752.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227080229|gb|EEI18192.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 212 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P ++ R G A Q + F LT RE+E L ++ G ++ Sbjct: 110 LLKDAPPAELVAAVRSAARGDAALSQVVRTRLETRESTPRFSLTPRELEVLQLVAGGSSN 169 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI L +S TV +++ I K ++R+ A+A A ++ Sbjct: 170 REIGHELMLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGML 212 >gi|218889798|ref|YP_002438662.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218770021|emb|CAW25783.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 906 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172 + G + + +G L L + LR++L Q Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828 Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + G L+GRE+ L I++G ++ EI+ L IS +TV ++ I K Sbjct: 829 LLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 889 VERRTQAVARAKHMGLL 905 >gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 27/234 (11%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 I V +R+ +G + L + + V + +P V L Sbjct: 13 AFEQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIAS--KIDSPFVRTTYPDAWVSRYLL 70 Query: 93 SEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIG 143 + K ++++ E P PE G+ S+ R Sbjct: 71 NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 130 Query: 144 LMLLFPKG---------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVE 192 L+ + + R + + L+ + Y++H D L+ RE+E Sbjct: 131 LLSVNARIPVEEWTELVRRCRNEWIEIAHLI-----HRKAVYELHGENDPVPALSPREIE 185 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I+ Sbjct: 186 CLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae] Length = 254 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+QA + D + Sbjct: 130 TVPLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|318059560|ref|ZP_07978283.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079903|ref|ZP_07987235.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 265 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G ++ +IA L +S TV +I ++ K + R+ A+ YA + I Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256 Query: 246 V 246 V Sbjct: 257 V 257 >gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTEL 108 +++Y+ + + + Q+ + + P ++ + + E D Y V + Sbjct: 26 VSDYLELRGYQVTIAENGQKALEK--LEEEVPELIICDIMMPEMDGYTLVKLIRENSQFG 83 Query: 109 FCPVFHTL-----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 + PV + + + Y FD + + + + R R IG Sbjct: 84 WIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTERLTRYRKSVIG 143 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 S + ELT E++ + +++GK + EI+ I+ +S+ T+ ++I++ Sbjct: 144 ----------TSPKIKVRSGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISN 193 Query: 224 IMRKTATKTRSGAIAYAVR 242 ++ KT R+ +A+ Sbjct: 194 MLGKTGLHNRTQLARWALE 212 >gi|289425275|ref|ZP_06427052.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289154253|gb|EFD02941.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|313792254|gb|EFS40355.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313838624|gb|EFS76338.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|315078129|gb|EFT50180.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|327453031|gb|EGE99685.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + +Q + V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|284990521|ref|YP_003409075.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063766|gb|ADB74704.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 232 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 8/177 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + L + F + + + + Sbjct: 50 DVVLMDIRMPGVDGLTAARQIAASPDLSEVRIIVLTTFEADEYVVEALRSGASGFLGKSV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFE-----LTGR 189 + + + ++ ++ L+A + A +S D + LT R Sbjct: 110 EPDELLDAIRVVARGDALLSPRATR--SLIARFLAQPGRSGPDPDGPAPVDAALDVLTER 167 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E + ++ G ++++IA L +S TV ++ M K + R+ + A + +V Sbjct: 168 EREMVALVAHGLSNEDIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVVLAYQTGLV 224 >gi|315501316|ref|YP_004080203.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315407935|gb|ADU06052.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 10/147 (6%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + L V + I Y + T + + + + Sbjct: 86 PQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELTDAIRRVADGDAVFSP------ 139 Query: 163 GLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D EL T RE E L ++ G EIA L IS TV Sbjct: 140 -RLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVET 198 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 199 HVSNVLRKLQMSNRYELSRWAADRRLV 225 >gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 824 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 11/133 (8%) Query: 125 GMDNRYCSLTFDVARIRIGLMLL-FPKGRIILRDRLWEIGL----------LAAYQANMF 173 GM+ +L + R ++L F + + D L I L + Sbjct: 692 GMEKGCAALAEAIGMGRADHLILPFAEYAPEMIDMLRHIAQNNSGDGYIIELLEACEHYI 751 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S LT RE+E LT +EG +EIA L +S TV ++A+I RK R Sbjct: 752 ESLSRAPESTVTLTERELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANIYRKLEVGGR 811 Query: 234 SGAIAYAVRNNIV 246 + A+ A + I+ Sbjct: 812 TAAVKKAGKLKII 824 >gi|28869333|ref|NP_791952.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28852574|gb|AAO55647.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330878542|gb|EGH12691.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331019215|gb|EGH99271.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L ++ G ++ Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGASVPEALTPRERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|323357435|ref|YP_004223831.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273806|dbj|BAJ73951.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 4/156 (2%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L+ + + P + F + + + + + + Sbjct: 65 GLTATAEILREPEAPRVVVLTTFDLDEAAARAIQRGASGFLLKDSEPEFLLSAIRTVHAG 124 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 +I + E L A N S + ELT RE E + G ++ EIA Sbjct: 125 SAVIAAEATRE--LFAHIAENG--SAEPVPASFGELTEREREIFLLAAAGLSNSEIAARE 180 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV +I+ I+ K + + R + +A R+ +V Sbjct: 181 FLSEATVKTHISRILAKLSLRDRVQLVVFAYRHGLV 216 >gi|319950310|ref|ZP_08024229.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436002|gb|EFV91203.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 250 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 5/144 (3%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI----- 162 L F + + D + G+ + ++ + + Sbjct: 103 LILTTFDRDDYLFDALRAGASGFLLKNSDPDDLVDGIRAVGHGHALLAPEVTRRVIERLA 162 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A A + LT RE E L ++ G ++ EIA L + TV +++ Sbjct: 163 APPPADDAPDAGRPGPRASELAGLTARETEVLRLVARGLSNAEIADELVVGEATVKTHVS 222 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S + K + R A+ A +V Sbjct: 223 SCLAKLHLRDRVQAVVLAYEVGLV 246 >gi|297154023|gb|ADI03735.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 2/170 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + L+ L + T + Sbjct: 46 DVVIMDIRMPEVDGLTATSEICADPELRASRILILTTYETDEYVAQALRAGAGGFIGKGI 105 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L+A + A + H + LT RE E + Sbjct: 106 GAEDLLDAVRTIADGDTLLSPAATR--SLVARFLATPDDTPSHHPEQLAVLTPREREMVA 163 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G ++ EIA + +S TV ++ M K + R+ + A R + Sbjct: 164 LVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGL 213 >gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ + + + + Sbjct: 96 RAGASGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAY 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 156 GDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215 Query: 244 NIV 246 +V Sbjct: 216 RLV 218 >gi|307329696|ref|ZP_07608853.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884636|gb|EFN15665.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 2/170 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V +A + + L+ L + T + Sbjct: 50 DVVLMDIRMPEVDGLAATTEICADPELRASRILILTTYETDEYVAQALRAGAGGFIGKGI 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L+A + A + H + LT RE E + Sbjct: 110 GAEDLLAAVRTIADGDTLLSPAATR--SLVARFLATPADAPPRHAERLSVLTPREREMVA 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G ++ EIA + +S TV ++ M K + R+ + A R + Sbjct: 168 LVATGLSNQEIAEQMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGL 217 >gi|288959032|ref|YP_003449373.1| two-component response regulator [Azospirillum sp. B510] gi|288911340|dbj|BAI72829.1| two-component response regulator [Azospirillum sp. B510] Length = 228 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 2/132 (1%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 +L SL + + +G ++ +L + E + M Sbjct: 93 QSLKAGADAYLNKSMSSESLLRSLRLVMLGEVVYPTHVAGLLMAAVNERPQHGSAYGPMP 152 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + EL+ REV+ L + G+++ IA L I+ +TV + ++MRK + R Sbjct: 153 GPIGMPTSG--ELSKREVQILRCLLAGQSNKAIARNLHITESTVKMHFKNVMRKINAQNR 210 Query: 234 SGAIAYAVRNNI 245 + A +A++N + Sbjct: 211 TQAAVWAIQNGL 222 >gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] Length = 252 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 11/191 (5%) Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125 W QE + +V SD + L ++ + L +F + I Sbjct: 62 WTAAQE-LIPDLVISDVMMPRLDGYGLLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQA 120 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFK------S 175 + Y FD + + + + +L + +IG +A + S Sbjct: 121 GVDDYIPKPFDPDELVARVRNVVRRQERLLAEAARYADADIGQMARQITEIRSLLQQTGS 180 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + T RE L ++EG + EIA L S V Y++ + KT T +R+ Sbjct: 181 HKSATPATHSFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFTKTGTTSRTE 240 Query: 236 AIAYAVRNNIV 246 + YA+ N +V Sbjct: 241 LVRYALENGLV 251 >gi|332712354|ref|ZP_08432281.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332348828|gb|EGJ28441.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 243 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L I EG ++ IA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 180 YPLTERELEVLRLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRS 239 Query: 244 NIV 246 +V Sbjct: 240 GLV 242 >gi|315648982|ref|ZP_07902076.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315275663|gb|EFU39017.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 217 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + G + LT RE E L I+EG+++ EI L IS TV ++++++ K R+ Sbjct: 144 RRHMVNGDESGLTEREKEVLLLIAEGRSNKEIGEELHISIKTVKTHVSNLLMKCELDDRT 203 Query: 235 GAIAYAVRNN 244 YA R Sbjct: 204 QLAIYAHRKG 213 >gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 227 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 4/139 (2%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + F + + + + ++ ++ + + A Sbjct: 85 VILTTFDRDDYLFESLGAGASGFLLKNTAPEDLVEAIQVVHSGHALLAPEVTRRVIKRFA 144 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 D+ ELT RE E L I+ G T+ EIA L + TV +++ ++ K Sbjct: 145 GGGERVYRPDLVA----ELTDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLK 200 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R A+ +A +V Sbjct: 201 LGLRDRVQAVVFAYECGLV 219 >gi|224552987|gb|ACN54744.1| PagR [Pantoea agglomerans] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQANMFKSYDVH-WG 181 N Y TF + L+LL + + + I L Y H Sbjct: 84 NIYQGRTFPLHDYLNNLVLLSVISQKDSDFNIEKYREKFISFLTNLHQKTLNLYSQHNQK 143 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE + L W+S GKT E+++IL I+ TV ++ ++M+K A+ Sbjct: 144 KNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGA 203 Query: 242 RNNIV 246 ++ Sbjct: 204 ELQLL 208 >gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 10/211 (4%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + + + M E VG + + L E D +V VR A+ + Sbjct: 16 VRTGLRMMLGMEERIELVGEAVDGVAAIHLVSELVPDVVVMD------VRMPAMDGLEAI 69 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 + + + V T E+ + Y DV + + ++ Sbjct: 70 EQIRAQFPHIAIIVLTTYDEDELMLRSLQAGARGYLLKESDVEVVLQAIERAARGEMLVQ 129 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + + + AA + + + +LT RE E L+ ++ G+ + EI LGI+R Sbjct: 130 PETIRRVLDYAARR-SASALLPAGSIHEVQLTEREQEVLSALAAGERNKEIGARLGITRR 188 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +Y+ S+ K +R+ A+ A+ ++ Sbjct: 189 TVESYLNSLYAKLNVDSRAAAVMVAIERGLL 219 >gi|329944904|ref|ZP_08292931.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529715|gb|EGF56611.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 240 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 8/221 (3%) Query: 32 LLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 + R+I +D + + L E VG + DL E+ IV D Sbjct: 1 MTLRLILVDDQEMYRLGFRMLLETQEGVEVVGEAEDGRAAVDLI-ERVEADIVLMDVRMP 59 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + + + P + F + + + + + Sbjct: 60 RMNGIEATRTITRG-GAGGPRVIVLTTFDLDEYAYEAIRAGASGFLLKDASLEELMAAIH 118 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + ++ + A + D + +LT RE E L ++ G +++ Sbjct: 119 HVHGGDAVMAPSTTRRLIEHFALPPPVVDDGDDRFRALADLTAREREVLARVARGLSNEA 178 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L ++ TV +++ I+ K + R+ A+ A + +V Sbjct: 179 IAHDLCVAEGTVRVHVSRILGKLGLRDRAQAVVLAYESGLV 219 >gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 237 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 67/177 (37%), Gaps = 12/177 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129 + + P L+ + + D + + + + + + + + Sbjct: 62 ELAETYKPDVLLMDVQMPRMDGIEALRRIKEEWPQIRVILLSAYTVDERVLEGLSAGASG 121 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + ++ ++I + L Y+ + + + G LT R Sbjct: 122 YLLKDSSAEGVVAAIRAVYAGEQVITSRISRRMMQL--YEQGLVEKEPIGEG----LTSR 175 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L I+ G EIA + ++ TV N+I++I RK RS + YA++ ++ Sbjct: 176 EIEVLLRIARGMVPKEIAQAIAVTEKTVRNHISNIYRKLNIYDRSQIVIYAIKKGLI 232 >gi|237880797|gb|ACR33055.1| response regulator [Actinoplanes garbadinensis] Length = 231 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 80/224 (35%), Gaps = 12/224 (5%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 ++ ++ +D ++ + + E G F + D + L S V P ++ Sbjct: 6 RGGPIVTDVLVVDGEALVSIGIKMILESTG--GFAVATTD---RENLRSAVEQHRPAVVL 60 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------CSLTFDVARIR 141 ++ D VL + L P + + PP + + L Sbjct: 61 LDGHSAQSDG-LEVLDQLRALSSPPAIAMLTTLAPPELVLDSLRGGACGFLLRDSQPEQL 119 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + + +G I+L + + A + + + + +L+ RE L + G Sbjct: 120 VAAVRALAEGSIVLAPEASSVVVRAGSRGSAAGAGSPACERVKQLSDREQSILRLLGAGL 179 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T+ EI+ L +S TV +++ I+ K R A A + + Sbjct: 180 TNAEISRQLFLSAATVKEHVSVILSKLGVANRVQAAVLAYASGL 223 >gi|227502186|ref|ZP_03932235.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227077010|gb|EEI14973.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 205 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 16/177 (9%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 + +V D V + + K P L + T + + Sbjct: 45 DDAPEVDVVVCDIQMPGVDGITAT---KKVTEAGGPPVLILTTYDTQADILAAVEAGAMG 101 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + ++ + R + + + LLA + L+ R Sbjct: 102 YLLKDSPEEELHEAVLNTAARRRTLAPEV---VNLLAQRVGQ----------PEQSLSTR 148 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L ++ G ++ E+A L IS TV ++ I +K TR+ A+ A ++ Sbjct: 149 ELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|260777127|ref|ZP_05886021.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC BAA-450] gi|260606793|gb|EEX33067.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC BAA-450] Length = 206 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201 + LL I++D +W +A F+ + LT RE E + + G Sbjct: 98 ISLLLKGMEKIMQDEMWLSRKVAQDYIEHFRCANSVTTSQAYANLTKREKEIMRLLGHGA 157 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ +IA L +S NTV ++ +I +K K R A+ +A Sbjct: 158 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 196 >gi|255642661|gb|ACU21562.1| AhyR/asaR [Aeromonas hydrophila] Length = 88 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 39/67 (58%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE+E W +EGK +IA ILGI+ TV ++ +++ K ++S AI++ Sbjct: 6 LSPHDALSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISW 65 Query: 240 AVRNNIV 246 A++ +V Sbjct: 66 ALKQGMV 72 >gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 226 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 17/210 (8%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107 A+ Y+ S F + Q ++ P ++ + + + D Y + P Sbjct: 17 AVQAYLEDSGFSVAAAPNAQAGW--ELLQQQTPDLVITDIMMPQVDGYQFLQQLRDDPRY 74 Query: 108 LFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV +T + Y + FD + + + + + Sbjct: 75 SRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNILRQRTNQQSSESTNL 134 Query: 163 GLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVILGISRN 215 LA+ A + + +LT RE L +++G + EIA L S Sbjct: 135 ADLASQIAEIRSILTKQNALERNITPIKIDLTPREQSVLDLVAQGLMNKEIARHLNTSVR 194 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + Y++ + KT T +R+ + +A+ + + Sbjct: 195 NIEKYVSRLFSKTGTNSRTELVRFALEHGL 224 >gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 395 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT RE E L + G ++ EIA L I+ TV +++ I+RK R+ AI Sbjct: 329 ARPPHRVELTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILRKYGAVNRAQAI 388 Query: 238 AYAVR 242 A+A++ Sbjct: 389 AWALQ 393 >gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649] gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649] Length = 217 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + L+ RE E L + EG ++DEIA L ISR TV ++ + K +R Sbjct: 144 RVVETMRVGQRPLSEREREVLVLVGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSR 203 Query: 234 SGAIAYAVRNNIV 246 +GA+A A R ++ Sbjct: 204 TGAVATARRLGLI 216 >gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] Length = 841 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE + L I+EG+ + EIA L IS TV +I +I K +R+ A++ A+ Sbjct: 779 ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 838 Query: 245 IV 246 ++ Sbjct: 839 LL 840 >gi|269797048|ref|YP_003316503.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099233|gb|ACZ23669.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 3/172 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + +A +E+ L F + + + Sbjct: 48 DVVLMDIRMPGLDGIAATEQICAGPAGSTTRVLVLTTFEEDEYVVAALRAGASGFIGKGA 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194 + I + + ++ L+ Y D G LT RE E Sbjct: 108 EPDDIVRAVRTVHLGESLLSSAATR--ALVERYVHQQAPRADAWEGDGLGRLTEREREVF 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G+T+ +IA L IS +T ++ IM K + R+ + A + +V Sbjct: 166 LLVAAGRTNQDIAAELVISTHTAKTHVNRIMTKVDVRDRAHLVILAYESGLV 217 >gi|222081230|ref|YP_002540593.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725909|gb|ACM28998.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 897 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%) Query: 138 ARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 R L ++++ +RL ++ A+ Q + V LT RE L Sbjct: 788 GRRLCQLAASRGVPDVVMQRLERLQDVVAGASAQDSDL--LSVPTAATGGLTDRERSVLR 845 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S G ++ EI L +S NTV ++ +I K TR+ A+ A I+ Sbjct: 846 LLSAGLSNKEIGRKLDLSNNTVKFHLRNIYAKLNVTTRTAAVTMARDTGIL 896 >gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] Length = 212 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 10/218 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R+ +D + L E G +L D + + + V D VR + Sbjct: 1 MIRVGVVDDQALVRSGVRGLLELTGDIQVVLEAADGAEALERLAGVRPDVLLLDVRMPGM 60 Query: 93 SEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 S D + R P + F + + + R+ + Sbjct: 61 SGIDLLRALNDRGCLPPTILLTTFDDDEALLAGMRVGARGFLLKDISLERLADAV----- 115 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAV 208 R + L+ GL + D LTGREVE L ++ G + EIA Sbjct: 116 -RRAAAGETLFRPGLTERVLDGVRGCGDFPKLDLPERLTGREVEVLALMAGGFNNREIAD 174 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LG S T+ N+++SI+ K + R A+ + + Sbjct: 175 ALGPSEGTIKNHVSSILSKLGVRDRVRAVLRGLELGYI 212 >gi|289678344|ref|ZP_06499234.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 213 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 13/164 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 L+ +A++++ R E + +LP + + F + IG Sbjct: 61 AKLLGLIAMTQQIGLLLSQARCDEARALLLRSLP--------AASGGALIPF---KALIG 109 Query: 144 LMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + +++ L + LL A S + G D L+ RE+ L I++G + Sbjct: 110 EHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLIAQGCS 168 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 169 NQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 212 >gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +V KD LT RE E L I+EG ++ EIA LG+S TV+N+ ++MRK Sbjct: 123 NPTNVQRSKDT-LTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNV 181 Query: 234 SGAIAYAVRNNIV 246 + YA++N ++ Sbjct: 182 ASITRYAMQNGLI 194 >gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 13/160 (8%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 +R +S + + + V+ + + L Sbjct: 60 LRMQGMSGVQTLHALRAEFGAVRVLVYSNYARGEEVYQAIKAGAAGFVV----KEMALDR 115 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R++ + +AA A + L+ RE+E L +++G ++ EI Sbjct: 116 LLEAIRVVNSGGQYIPEQVAARIAERLLA---------GLSPREMEVLKLLAKGLSNKEI 166 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A LG+ T+ Y+A+I K R+ A+ AV+ I+ Sbjct: 167 ATQLGLVVGTIKIYVANIFNKLGVSDRTQALVTAVKRGII 206 >gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 353 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ A A+ Sbjct: 284 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGAETRTAAAGIAMAR 343 >gi|330468676|ref|YP_004406419.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811647|gb|AEB45819.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 227 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + P L F T + + + Sbjct: 50 DVVVMDIRMPTMDGVEATRRLCADRPAGPPRVLVLTTFDTEADAFAALRAGASGFLLKNV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ ++ + A Q D +LT RE E L Sbjct: 110 PPEELLAAIRVVAQGDSVVAPSITRRLLDRFAGQLGTTPGEDPRLA---QLTEREREILL 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G + EIA + ++ TV ++ I+ K + R A+ A + +V Sbjct: 167 LVAQGLANAEIAERVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLV 217 >gi|315502130|ref|YP_004081017.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408749|gb|ADU06866.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 220 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 74/218 (33%), Gaps = 13/218 (5%) Query: 35 RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R++ +D + AL + VG + + +EQ+ D IV D Sbjct: 5 RVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGDGGSGLSVVREQRPD-IVLMDVRMPGGD 63 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + + +L + F + +R + + Sbjct: 64 GLEATRRILTDPMLDGVQVVMLTTFDDDEYLFEAIRAGAAGFLLKDTPPDALRDAVRTVA 123 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 D L + A +S G+ LT RE + L + G+++ EI Sbjct: 124 GG------DALLSPAVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQ 177 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +T Y++ +++K + R+ + A + +V Sbjct: 178 ALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLV 215 >gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 211 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L + LT RE E L ++++G ++ +IA+ L +S TV N++ + Sbjct: 127 LVLGEYRRIAQSKDDGPARPSLTERETEVLRYVAKGLSAKQIAMKLSLSHRTVENHVQAT 186 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 RK R YA+ + + Sbjct: 187 FRKLQVANRVELARYAIEHGL 207 >gi|238791898|ref|ZP_04635535.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238729002|gb|EEQ20519.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 245 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 41/228 (17%) Query: 59 SHFLLVRWDLFQEQKLDSIVS-----------SDWPFDLVRCMALSEKDKYYNVLQRPTE 107 +++ R + + + +V S++P D V+ + V+ + Sbjct: 16 KNYIQRRIKAYGDLRYSYLVMNKKTPLHPTIISNYPMDWVQTYKRNNYHLIDPVILTAKD 75 Query: 108 LFCPVFHTLPENITPPAGMD-------------NRYCSLTFDVARIRIGLMLLFPKGRII 154 P F ++ D N Y + D L + I Sbjct: 76 KVAP-FAWDDNSVINIKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNISNGSDDSI 134 Query: 155 LRDR--------------LWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWIS 198 D L +L Y N K+ ++ G+ + RE E L W S Sbjct: 135 SFDESIETNKEKIQMLLILTHDKMLGLYHKNNNKNNELNGVGGEREIFSPRENEILYWAS 194 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT E+++ILGI R+TV +I +++RK AI + ++ Sbjct: 195 VGKTYSEVSIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242 >gi|298490276|ref|YP_003720453.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232194|gb|ADI63330.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 240 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + LT RE+E L I G ++ +IA L I+ TV ++ +I+ K R+ A A+ Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234 Query: 242 RNNIV 246 R+ +V Sbjct: 235 RSGLV 239 >gi|17231260|ref|NP_487808.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907780|ref|YP_322076.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|3603297|gb|AAC82626.1| two-component response regulator OrrA [Nostoc sp. PCC 7120] gi|17132902|dbj|BAB75467.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701505|gb|ABA21181.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 240 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + LT RE+E L I G ++ +IA L I+ TV ++ +I+ K R+ A A+ Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234 Query: 242 RNNIV 246 R+ +V Sbjct: 235 RSGLV 239 >gi|254242610|ref|ZP_04935932.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192] gi|126195988|gb|EAZ60051.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192] Length = 906 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172 + G + + +G L L + LR++L Q Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828 Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + G L+GRE+ L I++G ++ EI+ L IS +TV ++ I K Sbjct: 829 LLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 889 VERRTQAVARAKHMGLL 905 >gi|255535518|ref|YP_003095889.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] gi|255341714|gb|ACU07827.1| two-component response regulator [Flavobacteriaceae bacterium 3519-10] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + + T D L + + D L + N+ + + + ELT R Sbjct: 104 FLTKTADSKEFVFALKEVLAGKVYLTEDT---KTALYNFICNVEQIEEHDPSRLEELTVR 160 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L I EG + EIA L IS +TV ++ +IM+K ++ S + +A+ NN+V Sbjct: 161 EKEVLHHICEGLRTREIADELFISPHTVESHRRNIMQKLDVRSSSMLVKFAMNNNLV 217 >gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 21/185 (11%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 + +R V +++P V + + D+Y VF L Sbjct: 53 MDIRMPHGDGLTATREVLAEFPATRVVVITTFDLDEY-------------VFEALDSGAA 99 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 D L+ V L +G +L RL ++ + G Sbjct: 100 GFLLKDADPEELSSAV--------LTVAEGGSVLSPRLTSRLIVEFARRKPAPMSTARSG 151 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D L+ RE++ + +S+G +++IA L + ++TV ++I++I +K +TR + +A Sbjct: 152 SDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAY 211 Query: 242 RNNIV 246 RNN++ Sbjct: 212 RNNVI 216 >gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 8/132 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D L V + ++ P L R+ + Q + Sbjct: 96 VMEAVENGASGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIR------SGQTD 149 Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 H +D LT RE+E L I+ GK++ EIA L IS TV ++ ++ KT Sbjct: 150 KKPDGLKHINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTG 209 Query: 230 TKTRSGAIAYAV 241 ++ R A+ +A Sbjct: 210 SRDRVHAVLFAF 221 >gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 301 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 5/145 (3%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF----PKGRIIL 155 +QR E V + I + + F ++ L P G + Sbjct: 148 REVQRVLERGLIVI-GAKDEILFASDRARTLLTRHFPGVTGSRVVLALLTGELPAGLKLS 206 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 L + + ++ LT RE E L W+++GKT+ EI ILG + Sbjct: 207 APADRTTRPLVVHLDEVPRAASPAQLAPLGLTPRETEILFWVAQGKTNAEIGTILGAAPA 266 Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240 TV ++ +++ K +TR A A Sbjct: 267 TVKKHVENLLPKLGVETRLAAALRA 291 >gi|291009185|ref|ZP_06567158.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA L I TV ++ +++ K + R+ A+ +A + Sbjct: 163 LTEREAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGF 222 Query: 246 V 246 V Sbjct: 223 V 223 >gi|288918024|ref|ZP_06412382.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350542|gb|EFC84761.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 282 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 38/67 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + F L+ RE++ L ++EG ++ E A L +S TV Y+ SIM K R+ A+ Sbjct: 215 RAQPFGLSPRELDVLRLVAEGMSNAETARRLAVSPETVKAYLRSIMNKLGVHNRTAAVNV 274 Query: 240 AVRNNIV 246 A R++++ Sbjct: 275 ARRSSLL 281 >gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] Length = 249 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVF 113 L R + FQ D ++ + + PF + L K+ + + F V Sbjct: 57 LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVL 114 Query: 114 HTLPENITP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 H N+ A R + ++L+ + ++++ LA Sbjct: 115 HDHMNNLALLSVIIANNGQEELEKRLSSERGAMQMLLID------INEQMYR---LAGAA 165 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ + Y K T RE E L W S GKT EIA I GIS +TV ++ +I+ K Sbjct: 166 SSSNQKYHTDADKPI-FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLG 224 Query: 230 TKTRSGAIAYAVRNNIV 246 AI V ++ Sbjct: 225 VSNARQAIRLGVELELI 241 >gi|255019078|ref|ZP_05291204.1| two-component response regulator [Listeria monocytogenes FSL F2-515] Length = 64 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+EGK++ EIA L I+ TV ++++I+ K + R+ A YA ++++V Sbjct: 1 ILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 54 >gi|152982513|ref|YP_001353581.1| LuxR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282590|gb|ABR91000.1| transcriptional regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 313 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 105 PTELFCPVFHTLPENITPPAG--MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 F PE +T P + L V +L+ R + + EI Sbjct: 167 CARQLLTQFGIDPEALTVPQSWWKGSSGMELVASVTEPAGASLLV----RNMGAAGMDEI 222 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LL N + LT RE E L+W+++GKT+ +I IL +S TV+ ++ Sbjct: 223 MLLIELSGN--HALPTGRLASAALTPRETEVLSWLAKGKTNRDIGEILKMSPRTVSKHLE 280 Query: 223 SIMRKTATKTR 233 I K +TR Sbjct: 281 HIFEKLGVETR 291 >gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + +S +LT RE+E L ++ G ++++I L IS T ++++IMRK Sbjct: 139 AAAVVRSLSGRTEPREQLTDREIEVLRLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKL 198 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+ A + ++ Sbjct: 199 DVSRRAEAVYAASKRGLI 216 >gi|159039748|ref|YP_001539001.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918583|gb|ABW00011.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 270 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE++ L ++EGK++ EI L +S +TV + + RK + R+ A+A R Sbjct: 207 VGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRA 266 Query: 244 NIV 246 +V Sbjct: 267 GLV 269 >gi|330975620|gb|EGH75686.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 704 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 13/164 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 L+ +A++++ R E + +LP + + F + IG Sbjct: 552 AKLLGLIAMTQQIGLLLSQARCDEARALLLRSLP--------AASGGALIPF---KALIG 600 Query: 144 LMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + +++ L + LL A S + G D L+ RE+ L I++G + Sbjct: 601 EHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLIAQGCS 659 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EI+ L IS +TV N+ + I K + R+ A+A A ++ Sbjct: 660 NQEISEQLFISLHTVKNHASHINNKLGVERRTQAVARAKTLGLL 703 >gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4] Length = 215 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I+ GK + EIA IL IS V ++ +I +K R+ A+ + Sbjct: 153 PLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICMQ 212 Query: 245 IV 246 +V Sbjct: 213 LV 214 >gi|302184842|ref|ZP_07261515.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] gi|330954520|gb|EGH54780.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPVLNGLGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L ++ G ++ Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 241 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 21/229 (9%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 + L ++ V M + + F +K + S++P Sbjct: 6 ENFLEQLSESVDAVDLCETMASAAAALDFPLFAYFSCPSASGRKPR--LISNYPPSWTSR 63 Query: 90 MALSEKDKYYNVLQRPTEL-------FCPVFHTLPENITPPAGMDNRY-----CSLTFDV 137 ++ V+ R + LP R+ +++ Sbjct: 64 YMQLRYHRHDPVILRGLQGWDTFDWGVDLARQHLPAAQQRILEEAARFGIRCGLTMSMHD 123 Query: 138 ARIRIGLMLLFP--KGRIILRD--RLWEIGLLAAYQANMFKSYDVHWG---KDFELTGRE 190 R R + L +LR R + L A ++F + LT RE Sbjct: 124 HRGRFAALTLASDQSRPPLLRSLSRYEQALQLVAISFHIFARRRLAEDCVVDGVILTPRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ECL W ++GK++ +I+ IL +S+ TV ++ + K +T + A+A Sbjct: 184 FECLKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVAR 232 >gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] Length = 94 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 40/64 (62%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I++KT T R + +A Sbjct: 7 DKSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRVALVRWA 66 Query: 241 VRNN 244 ++ Sbjct: 67 LQWG 70 >gi|330821495|ref|YP_004350357.1| Response regulator, NarL-family protein [Burkholderia gladioli BSR3] gi|327373490|gb|AEA64845.1| Response regulator, NarL-family protein [Burkholderia gladioli BSR3] Length = 236 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + L T + + + + G + P + + AA A+ Sbjct: 101 IVGALQAGATGYLLKERDDIEIALSIRSVLRGGAPIDPFVARHILETTVHAAPAAATPAS 160 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + L+ RE+E L +S+G T+ EI+ +L +SR TV +I +I +K A + Sbjct: 161 PGLLPSRNGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVR 220 Query: 232 TRSGAIAYAVRNNIV 246 +R+ A+ A + ++ Sbjct: 221 SRTQAVFEARAHGLL 235 >gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 255 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 42/79 (53%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 ++AN + LT REVE L I++GK S E+A L IS TV+ +I +I K Sbjct: 177 FKANFHEESIFKHKSFESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYGK 236 Query: 228 TATKTRSGAIAYAVRNNIV 246 +TR+ A+ A+ I+ Sbjct: 237 MQVRTRAQAVRCAILIGII 255 >gi|297564146|ref|YP_003683119.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848595|gb|ADH70613.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 5/144 (3%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + L V + I G Y + T + ++ + G + RL Sbjct: 85 PQIRFLALSVSDAAEDVIGVVRGGARGYVTKTISGRELADAIVRVA-DGDAVFSPRLAGF 143 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L A+ A D + LT RE E L I+ G E+A L IS TV +++ Sbjct: 144 -VLDAFSATDAPPVDPELDR---LTQREREVLRHIARGYAYKEVAKELFISVKTVETHVS 199 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S++RK R +A +V Sbjct: 200 SVLRKLQLSNRHELSRWATARRLV 223 >gi|282895907|ref|ZP_06303947.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281199152|gb|EFA74021.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 240 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I +G ++ +IA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 178 PLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237 Query: 245 IV 246 +V Sbjct: 238 LV 239 >gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 147 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 206 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 207 IELIKTALRMGV 218 >gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli TA280] gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863] gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli TA280] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 147 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 206 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 207 IELIKTALRMGV 218 >gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354] gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 196 IELIKTALRMGV 207 >gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185] gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli M718] gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185] gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli M718] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 196 IELIKTALRMGV 207 >gi|260467229|ref|ZP_05813405.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029004|gb|EEW30304.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG + IA L IS +T ++A+I+ K R+ AIA A+R + Sbjct: 148 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 207 Query: 246 V 246 V Sbjct: 208 V 208 >gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026] gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412] gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli TA143] gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory protein LuxR family [Escherichia coli UMN026] gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042] gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412] gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli TA143] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 196 IELIKTALRMGV 207 >gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS] gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia coli ATCC 8739] gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS] gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482] gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 196 IELIKTALRMGV 207 >gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++G+++ EIA L IS TV ++I I K + R+ AI YA + Sbjct: 154 DLTPRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKG 213 Query: 245 IV 246 IV Sbjct: 214 IV 215 >gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein ygeK Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 196 IELIKTALRMGV 207 >gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai] gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli O157:H7 str. EC4024] gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli] gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. EC1212] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 196 IELIKTALRMGV 207 >gi|13471875|ref|NP_103442.1| hypothetical protein mll1989 [Mesorhizobium loti MAFF303099] gi|14022619|dbj|BAB49228.1| mll1989 [Mesorhizobium loti MAFF303099] Length = 525 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L I+ G T+ E+A L IS T +++I S+ K TR+ A YAV + + Sbjct: 458 MTPREIEVLRLIATGLTAKEVARKLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGL 517 Query: 246 V 246 V Sbjct: 518 V 518 >gi|119716860|ref|YP_923825.1| response regulator receiver [Nocardioides sp. JS614] gi|119537521|gb|ABL82138.1| response regulator receiver [Nocardioides sp. JS614] Length = 207 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +LT RE E LT + EG + +IA L IS TV ++ S + R+ A +A Sbjct: 143 SPQVQLTSRETEVLTLVREGLANKQIARRLDISERTVKAHLTSAFARIGVADRTQAALWA 202 Query: 241 VRNNI 245 RN + Sbjct: 203 ERNGL 207 >gi|186685215|ref|YP_001868411.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467667|gb|ACC83468.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + LT RE+E L I EG ++ IA L I+ TV ++ +I+ K R+ A A+ Sbjct: 174 QPYTLTERELEVLQLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 233 Query: 242 RNNIV 246 R+ +V Sbjct: 234 RSGLV 238 >gi|327443251|gb|EGE89905.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P + + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVPMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + +Q V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|325964072|ref|YP_004241978.1| LuxR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470159|gb|ADX73844.1| transcriptional regulator, LuxR family [Arthrobacter phenanthrenivorans Sphe3] Length = 545 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 G+ LT RE E L ++ G+ + IA L +S TV +I++I K + Sbjct: 471 LMRKGDDGGEPGPLTAREAEVLRLVASGQGNRAIAAQLFLSEKTVARHISNIFLKLGLSS 530 Query: 233 RSGAIAYAVRNNI 245 R+ A YA + + Sbjct: 531 RAAATRYAFEHGL 543 >gi|111224287|ref|YP_715081.1| LuxR family transcriptional regulator [Frankia alni ACN14a] gi|111151819|emb|CAJ63539.1| Putative LuxR-family transcriptional regulator [Frankia alni ACN14a] Length = 349 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--------GRIILRDRL 159 P+ ++P PA L + + L L + + +LR R+ Sbjct: 206 RTEPLSTSMPPGHRAPAARAVGAVPLPRSPGQPQESLRLAYRELQEVTEHVADPLLRGRI 265 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + L + + G LT RE+E L ++ G ++ E A L +S TV Sbjct: 266 GGVSELLRGLLDQ----EAKVGGRLALTPRELEVLAQVALGLSNVETARRLTVSPETVKA 321 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 Y+ SIMRK + R+ A+ A + ++ Sbjct: 322 YLRSIMRKLGVRNRTAAVHAARQLGML 348 >gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 203 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFE 185 D R L + + +R+ L A + W D Sbjct: 80 DRRAVDEAVAAGARGFLAKSLVGEELVAGIERIAAGETLTAPARDGDTGPHAVWPAGDSG 139 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L I++G ++++IA +S NTV +YI RK TR A+A+A++N Sbjct: 140 LSPREAEMLALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVTTRPQAVAWALKNG 198 >gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 51/160 (31%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 + + + + P L F + R+ + Sbjct: 60 MTGIEATRRILADAADPAPRILILTTFDLDEYVYGALRAGAAGFLLKDAGPERLLAAVTA 119 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + + + +A+ + LTGREVE L ++ G T+ E Sbjct: 120 VHGGDSLFAPVVTRRLVEAFTERADTPPAPADPPADLRALTGREVEVLRLVARGLTNAEA 179 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ M K +R+ A+ A + +V Sbjct: 180 ADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAYESGLV 219 >gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143 VR + + + + + + T + AG+ + + A + Sbjct: 58 VRMPDVDGVEATARLTRERPQSKVILLTTFDVDAYVYAGLRAGASGFLLKDSHAATLIAA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + ++ W L + A + + LT RE + L+ G ++ Sbjct: 118 VHTVASGNAVLSP---WATSRLVSTFAPLLPEPLATPPRLKALTARERDVLSLTGRGLSN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EIA LGI TV +++ S+M K + R A+ A ++ Sbjct: 175 NEIATELGIGYETVKSHLRSVMTKLRLRDRVHAVIVAYETGLL 217 >gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ + + A + Sbjct: 99 RAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSRLAETPRLSASVHAAY 158 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 159 GELTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 218 Query: 244 NIV 246 +V Sbjct: 219 RLV 221 >gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 245 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 16/189 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V SD + L +K + L +F + + Y Sbjct: 59 QQMLPDVVISDVMMPRLDGYGLLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 118 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177 FD + + + + + +L++ ++G +A QA S + Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSTE 178 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 T RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 179 PVV---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235 Query: 238 AYAVRNNIV 246 YA+ + +V Sbjct: 236 RYALEHRLV 244 >gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] Length = 233 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 11/182 (6%) Query: 68 LFQEQKLDSIVSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 +QEQ I + + + S ++ + + + F + +T P Sbjct: 57 HYQEQGFHMIDPTLHMSQRSIAPVDWSRLERSNDFRRVFRDAHD--FGIGDQGLTIPVRG 114 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DF 184 DV + + + + ++R + ++ LA + + S D+ Sbjct: 115 PYG------DVGLLSVTRECSTEEWQKLVRHVIGDLQSLAVHIHDTVMSSDMLGRILYHP 168 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REVE L W++ GK+ +I IL IS TV ++ S K T + A+ AV Sbjct: 169 SLSTREVEILQWVAAGKSQQDIGDILSISHRTVEVHLRSSREKLCALTTAQAVGRAVGLG 228 Query: 245 IV 246 ++ Sbjct: 229 LI 230 >gi|320333696|ref|YP_004170407.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754985|gb|ADV66742.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 214 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 14/135 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D +L + R+ G + L + + + Sbjct: 89 VFEAVKAGARGYVLKDADASTLLDAIQRVAGG-------------EALLDADMAQNVLDD 135 Query: 172 MFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +V K +L RE L +++G ++ +IA+ L IS TV N ++ I K Sbjct: 136 FRDKREVLPSEKHADLNERETTILKLLAQGYSNQDIALRLDISEKTVRNRLSEIFTKLQL 195 Query: 231 KTRSGAIAYAVRNNI 245 R+ A YA+R I Sbjct: 196 NNRTQAALYAIREGI 210 >gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] Length = 202 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 21/202 (10%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPE 118 ++V + + ++ D FD+V + + + L + Sbjct: 1 MIVDDHPLMRRGIRQLLEMDHSFDVVA--EANCGSEAITEAAKCQPDVILLDLNMKGMSG 58 Query: 119 NITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---------- 164 T A G+D R LT AR + M+ +L+D EI L Sbjct: 59 LDTLKALRHDGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRRAAHGE 118 Query: 165 --LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + A S ELT RE++ L ++ G ++ ++A L IS TV +I Sbjct: 119 NVFSNEVAQYLSSRHEEINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIR 178 Query: 223 SIMRKTATKTRSGAIAYAVRNN 244 +++RK ++R A + N Sbjct: 179 NLLRKLNVRSRVAATIMFLENK 200 >gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 10/120 (8%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185 Y D + L L + R +A + F+S +D Sbjct: 105 GYLLKNMDPDEWLLYLHALLDDNSEVARK-------MADRIMSQFRSPVKGTEQDPSPSV 157 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +S+G + +IA+ L IS NTV N++ +I+ K + R AYAV++ + Sbjct: 158 LTARETEIVAHVSKGYNNKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQL 217 >gi|110833289|ref|YP_692148.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110646400|emb|CAL15876.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 146 LLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 LL + IL LW +L Y + LT REVE L ++ G + Sbjct: 117 LLSKGLKAILDGELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNS 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L +S +T+ +I +I +K R A+ +A N Sbjct: 177 DIACSLNLSPHTIKTHIYNIFKKINASNRLQAVNWAQEN 215 >gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 10/150 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-------- 157 + V P + + + V G ++ + + Sbjct: 68 AQATAAVLAVSPSSRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAVTDTAAGR 127 Query: 158 --RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L + LT RE E L ++++G ++ +IA L +S Sbjct: 128 AVFTPSLAGLVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHR 187 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV N++ + RK R YA+ + + Sbjct: 188 TVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 242 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L +++G ++ EIA L I+ TV N+I ++ +K + R A+ AVR Sbjct: 170 LPLSPREMEVLDCVAQGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDRVQALTCAVRR 229 Query: 244 N 244 Sbjct: 230 G 230 >gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 9/196 (4%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPV 112 + A+ F + + ++ P ++ M L D VL+ + V Sbjct: 29 LEAAGFTV-SATAEGVESARRRAAAVQPAVVLMDMNLPDGNGADATTAVLEVSPKSKVLV 87 Query: 113 FHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 E + + Y + VA + + F G+ + L + +L Y+ Sbjct: 88 LSASAERDDVLDAVKAGASGYLVKSASVAELLEAVRATF-DGQAVFTPGLAGL-VLGEYR 145 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 D + LT RE E L +++G ++ +IA L +S TV N++ + +RK Sbjct: 146 RMSTAPADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQ 205 Query: 230 TKTRSGAIAYAVRNNI 245 R YA+ + Sbjct: 206 LANRVELTRYAIEQGL 221 >gi|330807579|ref|YP_004352041.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375687|gb|AEA67037.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 911 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 13/153 (8%) Query: 106 TELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLML--LFPKGRIILRDRLW 160 ++ + + G + R + F+ A + LF + R LR++L Sbjct: 759 RQMLSVMALNQKVALLLSIGREPEARRTLAQAFEAASGGVLQPFEWLFGEHREWLREQLL 818 Query: 161 EI-------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + LL + + + D + L+ RE L I++G ++ EI+ L IS Sbjct: 819 QAPPSTLREHLLERLPSTVAQPADPAAPVET-LSSRERAVLQLIAQGCSNQEISEQLFIS 877 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + + I K + R+ A+A A ++ Sbjct: 878 LHTVKTHASHINSKLGVERRTQAVARAKALGLL 910 >gi|302530267|ref|ZP_07282609.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439162|gb|EFL10978.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL------FCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + D Q EL F + + + Sbjct: 48 PDLVLMDVRMPVLDGVAATAQICAELPETSVLVITTFDLDEYAYSALRAGASGFLVKDAP 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + + + ++ LL Y + D K LT RE + L Sbjct: 108 SDEMLVAIRGVLRGDAMVSPSVTKR--LLDRYLSAHRTPLD--EQKLETLTEREKDVLGL 163 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L I TV ++ ++ K + R A+ +A + +V Sbjct: 164 IARGLSNTEIAGTLFIGETTVKTHVGRLLNKLGLRDRVHAVVFAYESGLV 213 >gi|253996413|ref|YP_003048477.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera mobilis JLW8] gi|253983092|gb|ACT47950.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Methylotenera mobilis JLW8] Length = 274 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 36/53 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE+E ++WI GKT+ EI +IL IS+NTV +++ I +K R+ A+A Sbjct: 198 LSEREIEVISWIKAGKTNQEIGMILSISQNTVKSHLKRIFQKLNIGRRAQAVA 250 >gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 31/226 (13%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 ++ + + S+F++ + + S++P + E ++ Sbjct: 9 IKRKLKGVGDVW-FSYFMMSKT-----STSHPYIISNYPEAWMNEYLKKEMFLSDPIIVA 62 Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLT----------------FDVARIRIGLMLLF 148 P + +T A + + S +VA + I L Sbjct: 63 SLARITPFSWDDNDLVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANHLED 122 Query: 149 PKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 ++ ++ +L A +A ++ ++ L+ RE E L +S Sbjct: 123 ADFEKCMKSHENDLQMLLVNVHEKVMAYQRAIKDQAKPPDSSRNALLSPRETEVLFLVSS 182 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 G+T E++ ILGIS TV +I + +RK AI A+ N+ Sbjct: 183 GRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|310287681|ref|YP_003938939.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] gi|309251617|gb|ADO53365.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] Length = 255 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166 V + + D +L + + G ++ P L +++ E G Sbjct: 109 VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 168 Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 A ++ D EL T RE E L I+ G ++ EIA L IS T Sbjct: 169 TDGYADGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 228 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++A I+ K + R A+ +A N +V Sbjct: 229 HVAHILAKINARDRVQAVVFAYDNGLV 255 >gi|239932840|ref|ZP_04689793.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G LT R+ L+ ++EG + +IA++LG S +TV N I IM + + R+ A+ Sbjct: 76 ADGGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAV 135 Query: 238 AYAVRNNIV 246 A+AVR+ +V Sbjct: 136 AHAVRHGLV 144 >gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 208 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 8/161 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L R ++ + +L + E + + + YC V + + + Sbjct: 56 LPRLDGIAATKQIKEILPEIRVVMLTSHTAETEVLASLSSGADAYCVKGGSVDSLIVAIQ 115 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + + +A K + L+ RE+E L + EGK++ E Sbjct: 116 AAYEGATYLDP-------QVARLVMEHLKPP-LPQSNLGTLSPRELEVLKLMVEGKSNPE 167 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S NT+ ++ IM K A R A+R+ +V Sbjct: 168 IAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208 >gi|218438401|ref|YP_002376730.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171129|gb|ACK69862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 249 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 167 AYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++Q + +S D + + E LT RE++ L I G + +IA L I+ TV ++ + Sbjct: 166 SHQTRVIESVDPEYQQLLESDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRN 225 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K R+ A A+R+ +V Sbjct: 226 ILNKLCVNDRTQAAVRALRSGLV 248 >gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---E 185 Y D I + + G I I LA A + +V G Sbjct: 110 GYLLKERDDVEIILSIRSALRGGAPIDPFVARRILDLAGKMAPLAGGAEVQAGPTVGAPP 169 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L+ +S+G T+ EIA +L +S+ TV +I + +K A +R+ A+ A + + Sbjct: 170 LSAREIEILSLVSKGLTNREIAEVLSLSKLTVECHIRNSYKKLAVHSRTQAVFEARASGL 229 Query: 246 V 246 + Sbjct: 230 L 230 >gi|333024002|ref|ZP_08452066.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332743854|gb|EGJ74295.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G ++ +IA L +S TV +I ++ K + R+ A+ YA + I Sbjct: 192 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 251 Query: 246 V 246 V Sbjct: 252 V 252 >gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 238 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 56/171 (32%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + + P L F + + Sbjct: 64 DVVLMDVEMPDVDGLEATRRIRAEQDQAGPAVLILTTFDRDDYLFAALRAGASGFLLKNG 123 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ ++ + + A +LT RE E L Sbjct: 124 TPEALIEAIRVVARGDGLLAPEITRRVIATFARPGGPSTGGTDPQAALRDLTPREREVLV 183 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++++ ++ K + R A+ +A +V Sbjct: 184 LVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAVVFAYEQGVV 234 >gi|298250577|ref|ZP_06974381.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548581|gb|EFH82448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1102 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 40/77 (51%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ + + LT RE E L+ ++ G ++ +IA L IS +TV +++++ K Sbjct: 1026 SSARQPSVISSAPGISLTRREQEVLSLLAAGASNQDIAQALVISLDTVKKHVSNLFGKLG 1085 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A+A A +++ Sbjct: 1086 AGNRTQAVALARARSLL 1102 >gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 4/164 (2%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 +++R + + +L E V + T V R G Sbjct: 59 EVIRGLRAALPQVRVLMLSASGEQ-QSVLDAVKAGATGYLVKSAAPAEFLDAVRRTAAGE 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGK 201 + P ++ + A A G+D + LT RE E L +++G Sbjct: 118 PVFTPGLAGLVLGEFRRLAAGADESAGGRGPVAATAGRDTDAPRLTDRETEVLRLVAKGM 177 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + +IA LG+S TV N++ + + K R YA+ + Sbjct: 178 SYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 221 >gi|239816565|ref|YP_002945475.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803142|gb|ACS20209.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 235 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F L D L + I G + P +G LAA Q + Sbjct: 104 IFAALRAGAIGYLLKDRDDLELGIALRSIEQGGSPIDPAIAR------HILGWLAAQQPS 157 Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 LT RE L +++G ++ ++A L ISR TV + +I RK A Sbjct: 158 PPAVSAADAPAALPVALTPRERRILELVAQGLSNRDMAESLSISRLTVECHTKNIYRKLA 217 Query: 230 TKTRSGAIAYAVRNNIV 246 +R+ A+ A R+ ++ Sbjct: 218 VSSRTEAVYQARRHGLL 234 >gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 262 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 85/271 (31%), Gaps = 54/271 (19%) Query: 17 EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-------------VGASHFLL 63 + P R ++ R+ T+ +G H+++ Sbjct: 3 PISRRRSNEGPHRPSTVSDRQQAGAPAPLK-RLACATDIPSLVESFGHAAGKLGFPHYVI 61 Query: 64 VRWDLFQE----QKLDSIVSSDWPFDLV-----RCMALSEKDKYYNVLQRP--------- 105 R + Q ++ S +P + V R AL++ Q Sbjct: 62 SRVTRSRSTRAPQTALEMIGSHYPKEWVQHYQRRDYALTDPVHRAAFFQSAPYRWHDIID 121 Query: 106 ------TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR- 158 L LP ++ P + L + + + ++ + Sbjct: 122 LTKADHRFLGEASEAGLPAGLSIPVHQSDGSVLLFNLAGPLHSVNSEINARRACLMSAQF 181 Query: 159 ---LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 L +GL+ + +A LT ++ CLTW++ GKTS EI ILG S Sbjct: 182 NFELHRLGLIHSRRAARL------------LTPCQIVCLTWVARGKTSAEIGEILGCSHY 229 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV+ ++ M R+ A A ++ Sbjct: 230 TVDYHVKKAMEALNIWGRTAAAVQATVQGLI 260 >gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 203 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 11/165 (6%) Query: 83 PFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 P ++ +++ + + Y L T + H P + L Sbjct: 47 PELVILDLSMPDGNGLLYLRQLSEMTRVLVLTMHDDPAYVRQVIQAGGSGYVLKEAAD-- 104 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + LF R +L + + LAA + K L+ RE+E L ++ G Sbjct: 105 ----VELFSAIRAVLSGQTYIYPTLAAKLVEEKAGGE---RKSVPLSPRELEVLRLVALG 157 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T+ EIA+ L +S TV Y I K TRS + YA+ + + Sbjct: 158 HTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYALEHKL 202 >gi|307325178|ref|ZP_07604382.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889324|gb|EFN20306.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179 + ++ +A G ++ + + + R L AA H Sbjct: 92 GLALSAADDIGAVRNALAGGVKGYVVTGTRTNLGIPGRPGTAPLGAAARMHRRPPGAPGH 151 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A Sbjct: 152 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 211 Query: 240 AVRNNIV 246 A+R I+ Sbjct: 212 ALRTGII 218 >gi|289641921|ref|ZP_06474076.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508221|gb|EFD29165.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 371 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 52/170 (30%), Gaps = 21/170 (12%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + E Y P H + +R F + + Sbjct: 194 IRAGEATSYVVAPITPAGRVVGFLHADHGSGGHTCDETDRDVLWAFSEGFGHLYERSVLV 253 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHW---------------------GKDFELTG 188 + + RDR+ + + ++ G ELT Sbjct: 254 ERLRLQRDRVRQTLAVVGAALEELTEAEIELVTAPDDDTPVARTASSVFRSEGGLDELTA 313 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 RE E L I+ G ++ EIA L I+ TV ++ I+ K RS AIA Sbjct: 314 REREVLALIAGGASNQEIAEQLVITVGTVKTHVKHILAKLGAVNRSQAIA 363 >gi|282861721|ref|ZP_06270785.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563537|gb|EFB69075.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 229 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 10/174 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132 P ++ + + E D + RP L F + + Sbjct: 49 PDVVLMDVRMPEMDGLAAARELLSAPAGTDHRPKVLMLTTFDVDDYVYEALRVGASGFLL 108 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 A + + ++ ++ + A Q + LT RE E Sbjct: 109 KDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPSGAFRSGPARRLKGLTPRETE 168 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ EIA L ++ TV +++ I+ K + R+ A+ +A + +V Sbjct: 169 VLELVARGLSNQEIAGRLVVAEQTVKTHVSRILAKADLRDRAQAVIFAYESGLV 222 >gi|256396450|ref|YP_003118014.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362676|gb|ACU76173.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 211 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 19/135 (14%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + + T D L V G +L P L RL + Sbjct: 96 IVRAVEAGATGYLLKDTPRADLAEAVRLAARGETVLAPAVAAKLVSRLRQPAA------- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L ++ G + EI L IS TV ++ K Sbjct: 149 ------------QPLTPREREVLALVARGLANAEIGRELFISEATVKTHLVRAFGKLGVD 196 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A+ ++ Sbjct: 197 DRTAAVTKAMAQGLL 211 >gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 9/158 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 ++L D + E L T G D+ + +L+ A R +M Sbjct: 59 DLSLPRLDGVAAIRTICREFPEARIIAL----TTRQGDDDIHQALS---AGARSYVMKNM 111 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 P+ ++ R G Y ++ + K LT RE+E + ++ G ++ EI + Sbjct: 112 PRQEMLRAIRAVHDG--QEYLPQEVQTALLQHEKRAPLTPRELEVIRLLARGCSNKEIGM 169 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGI+ T +++ ++ K RS A+ A+R+ I+ Sbjct: 170 ALGIAEITAKIHVSHLLSKMGVLDRSQAVMEALRHGII 207 >gi|72162981|ref|YP_290638.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916713|gb|AAZ56615.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 233 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 5/141 (3%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + ++ + G + RL +L Sbjct: 98 RFLALSVSDAAEDVIGVIRAGARGYVTKTISGTELADAIVRVA-DGDAVFSPRLAGF-VL 155 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ A D + LT RE E L I+ G E+A L IS TV +++S++ Sbjct: 156 DAFAATDAPPVDPELDR---LTQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVL 212 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK R +A +V Sbjct: 213 RKLQLSNRHELSRWATARKLV 233 >gi|25027912|ref|NP_737966.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259506306|ref|ZP_05749208.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23493195|dbj|BAC18166.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259166086|gb|EEW50640.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 221 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + R LT + + G ++ P+ + +L E+ L Q Sbjct: 94 FGALRAGAAGFLLKNTRPVELTAAIRTVHAGDAVVSPR----ITAKLIEVALPQLNQGVP 149 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D + LT RE E + G T+ EIA L +S +TV + ++ K + Sbjct: 150 PTEQDPELDR---LTEREREVFVLVGRGYTNPEIAQALHLSESTVKTHFGRVLMKLGLTS 206 Query: 233 RSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 207 RVQAVIRAYELGLV 220 >gi|154244941|ref|YP_001415899.1| two component LuxR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159026|gb|ABS66242.1| two component transcriptional regulator, LuxR family [Xanthobacter autotrophicus Py2] Length = 210 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + + LT R++E L +S G ++ EI L +S TV +I SI R Sbjct: 137 VATSEAAEEPAPHLTTRQLEVLKLLSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLHVIN 196 Query: 233 RSGAIAYAVRNNIV 246 R+ A + A + N++ Sbjct: 197 RTQAASAARQGNLI 210 >gi|166367722|ref|YP_001659995.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090095|dbj|BAG04803.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 223 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L + S+ + + LT RE E L WI++ K++ IA ++G S TV ++ Sbjct: 130 QFLLILEEQELPSFSIAALELLGLTKREAEVLFWIAQDKSNAAIAKVIGCSEGTVRKHLE 189 Query: 223 SIMRKTATKTRSGAIAYAV-RNNIV 246 I K +TR+ A+ A+ + ++ Sbjct: 190 HIHGKLGVQTRTAAVIVALEKLGLL 214 >gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9313] gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9313] Length = 92 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 HISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMD 70 Query: 243 NNIV 246 + + Sbjct: 71 HGKI 74 >gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 3/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 H+ + R L I ++ +G+ + + +L Sbjct: 85 MHSDESYVLKALKAGARAYLLKDSAEHDLIAAVIAVSEGKAFFSPAISK--MLVEDYMRQ 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + + + LT RE E L ++EGK + E+A IL +S TV + +I++K + Sbjct: 143 MQERQIEDSYEL-LTTREREVLQLLAEGKNNKEVAAILNLSLYTVETHRGNILQKLNLHS 201 Query: 233 RSGAIAYAVRNNIV 246 + I YA+R ++ Sbjct: 202 GAELILYAIRKGVI 215 >gi|302189119|ref|ZP_07265792.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 909 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWGKDF 184 SL I +L + L ++L LL A S + G D Sbjct: 788 SLPAASGGALIPFKVLLAEHPQWLHEQLLQLPPCRVRAALLEKLPACCTPSPEPAHGSDC 847 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A Sbjct: 848 -LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLG 906 Query: 245 IV 246 ++ Sbjct: 907 LL 908 >gi|295400759|ref|ZP_06810736.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294977340|gb|EFG52941.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 185 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D LT E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK +R Sbjct: 113 PADRLSNYHPPLTNVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRV 172 Query: 235 GAIAYAVRNNIV 246 GA+ A++ I+ Sbjct: 173 GAVVKAMKLGIL 184 >gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 13/214 (6%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R++ +D + +L E ++ + Q+ L V++ P ++ + + Sbjct: 7 RLLLVDDQQIIRQGLRSLLE-AKPDLEVVGEAENGQQAVL--QVAALHPDVVLMDVRMPI 63 Query: 95 KDKYYN---VLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLF 148 D + Q+ + V T ++ M Y + + + Sbjct: 64 MDGVAATRLIGQQFPQTRVLVLTTFDDDEYVSRSMQLGARGYLLKDTHSDDLAAAIRAV- 122 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G + L E + ++ LT RE E L+ I G ++ EIA Sbjct: 123 HRGYTQMGPGLLEKAIAPPAVSSTPPPLPPELA---GLTPREREVLSLIVAGASNREIAE 179 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L IS TV N+I+ I+ + + R+ A +A R Sbjct: 180 ALYISERTVKNHISRILSQLHLRDRTQAAMFASR 213 >gi|313140461|ref|ZP_07802654.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313132971|gb|EFR50588.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 248 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166 V + + D +L + + G ++ P L +++ E G Sbjct: 102 VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 161 Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 A ++ D EL T RE E L I+ G ++ EIA L IS T Sbjct: 162 TDGYADGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 221 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++A I+ K + R A+ +A N +V Sbjct: 222 HVAHILAKINARDRVQAVVFAYDNGLV 248 >gi|124006802|ref|ZP_01691632.1| two-component response regulator [Microscilla marina ATCC 23134] gi|123987483|gb|EAY27192.1| two-component response regulator [Microscilla marina ATCC 23134] Length = 208 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L ++ EG ++ EIA L IS TV+N+ A+I++K K + +A+ + Sbjct: 147 QLSAREKEVLHFLVEGLSNKEIADKLFISSKTVDNHRANILKKLNLKNNVQLVRFALEHK 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|59713015|ref|YP_205791.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio fischeri ES114] gi|59481116|gb|AAW86903.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio fischeri ES114] Length = 214 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ + +II + +++ + + LT RE E L ++ G ++ Sbjct: 109 IISYGVKKIIEGEMWLSRKIISELIFTYREKQNAILSTSISLTTRESEILRLLASGASNL 168 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +IA L +S NTV ++ ++ +K K R A+ +A Sbjct: 169 DIANSLFVSENTVKTHLYNVFKKLNVKNRLQAMMWA 204 >gi|87123676|ref|ZP_01079526.1| possible DNA-binding response regulator [Synechococcus sp. RS9917] gi|86168245|gb|EAQ69502.1| possible DNA-binding response regulator [Synechococcus sp. RS9917] Length = 261 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 LV +E+ L S+ +SD DL+ C + E ++++R E P TL P Sbjct: 63 LVAATSTEEECLLSLQNSD--ADLLVCTDMLEIGSGPSLVRRAKEAH-PGLKTLMLIQRP 119 Query: 123 PAGMDNRYCSLTFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 D + G + I D + G++ + Sbjct: 120 IVRTILEAVEAHCDGLCSHQSTGTGSVRTALAAIDSDGTYMDGVITGVLRHGRLGGSSGH 179 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G EL+ RE + L + G ++ EIA L +S +TV ++++S++RK R+ A+ A Sbjct: 180 GPLAELSLREEDVLRGLCRGMSNQEIADALVVSIDTVKSHVSSLLRKLPANDRTHAVVVA 239 Query: 241 VRNNIV 246 R +V Sbjct: 240 FREGLV 245 >gi|319782058|ref|YP_004141534.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167946|gb|ADV11484.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 208 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ D H + L+ RE E L ++EG + IA L IS +T ++A+I+ K R Sbjct: 135 EASDEHAVRP-SLSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANR 193 Query: 234 SGAIAYAVRNNIV 246 + AIA A+R +V Sbjct: 194 TDAIATAMRQGLV 206 >gi|269796958|ref|YP_003316413.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099143|gb|ACZ23579.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 222 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 10/178 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMD 127 + S ++ + + D Q + L F T + Sbjct: 42 RLARSAQADLVLMDIRMPGTDGIEATRQICADDALAGVKVLVLTTFETDELVVAALRAGA 101 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + + D A + + + +++ L+ +LT Sbjct: 102 SGFLGKGVDPAALIDAVRTVAEGEQLLSPAATR--SLIERVVQEPEPEPPAVVHGMSDLT 159 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE E + ++ G ++ EI L IS TV ++ M KT + R+ + +A + Sbjct: 160 EREREITSLVAGGLSNTEIGQHLFISPATVKTHVNRAMMKTGARDRAQLVVFAYDAGL 217 >gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] Length = 235 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190 AR GL+ L I L + L ++ N S + G LT RE Sbjct: 120 ARGAFGLLSLARGEGEIDGHELKRLSLQLSWITNAVHSAMTAHVFDSLGLGAAISLTERE 179 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L W EG + +I+ L IS +TVN +I ++ K + A A AV N++ Sbjct: 180 RQVLRWTVEGLNAFDISEKLNISVSTVNWHIGKVLAKFGATNKVQAAARAVALNLL 235 >gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 222 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 9/196 (4%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPV 112 + A+ F + + ++ P ++ M L D VL+ + V Sbjct: 29 LEAAGFTV-SATAEGVESARRRAAAVQPAVVLMDMNLPDGNGADATTAVLEVSPKSKVLV 87 Query: 113 FHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 E + + Y + VA + + F G+ + L + +L Y+ Sbjct: 88 LSASAERDDVLDAVKAGASGYLVKSASVAELLEAVRATF-DGQAVFTPGLAGL-VLGEYR 145 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 D + LT RE E L +++G ++ +IA L +S TV N++ + +RK Sbjct: 146 RMSTAPADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQ 205 Query: 230 TKTRSGAIAYAVRNNI 245 R YA+ + Sbjct: 206 LANRVELTRYAIEQGL 221 >gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 241 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELT 187 Y V + + + I L+ + + +S ELT Sbjct: 122 GYLLKAISVTELAEAVRAIVKGDSFINPA--MATKLIGEFAELAKQESAPPSRTTIPELT 179 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 RE E L ++ + EI L I+ NTV N++ I+ K +R+ A YAVR Sbjct: 180 RRETEVLKLLARSLNNREIGERLFITENTVKNHVRKILEKLQVHSRTEAAIYAVR 234 >gi|15805459|ref|NP_294155.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458112|gb|AAF10009.1|AE001902_9 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 214 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 15/219 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ D + + +L E G + V + ++ + P ++ + + Sbjct: 1 MIRVLLADDHALFRQGLRSLLESEG----MRVIGEAANGREAVRYAADTQPDVILMDIQM 56 Query: 93 SEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 E D + + + ++ Y D + + Sbjct: 57 PELDGVKATQSILEINPQARVIMITMYRQDRYVFEAVKAGARGYILKDADAGTLIDAITR 116 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + ++ D +L ++ K ++ K +L RE L +++G ++ +I Sbjct: 117 VAAGEALLDAD--MAQNVLDDFRD---KREELPSEKHADLNERETMILKLLAQGFSNQDI 171 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A+ L IS TV N ++ I K R+ A YA+R I Sbjct: 172 ALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 + D Q++ PF + Y Q + +T P Sbjct: 77 YQHDPVQQRATRRTT----PFVWSYRTDGNRPGVEYVGAQHRQVTRYLCDSGMGNGVTVP 132 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK 182 + + + + + + + +L LLA A+QA + D + Sbjct: 133 LHLPGGAFA------TLSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERR 186 Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE ECL + ++G T+ IA L S TVN ++ S RK + R A+ Sbjct: 187 CHHIALTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRG 246 Query: 241 VRNNIV 246 + ++ Sbjct: 247 MHYRLL 252 >gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + + ++ RE+E L +S GK++ +A L IS +TV N++ SI+ K R+ A+ Sbjct: 139 AEYAMEDAVSPRELEVLQEVSRGKSNKIVAGDLNISEHTVKNHLKSILSKLDASDRTDAV 198 Query: 238 AYAVRNNIV 246 A+R + Sbjct: 199 VIAIRRGYI 207 >gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 214 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 7/122 (5%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 Y + I + + + I D +A F V Sbjct: 97 RAGARGYLLKDAEPDEIIRAVRAVARREAIFGPD-------IANRVLAFFNQPPVSEPVF 149 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELTGRE E L I+ G ++ IA L +S TV N+I+++ K R+ AI A Sbjct: 150 PELTGREREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRARDA 209 Query: 244 NI 245 + Sbjct: 210 GL 211 >gi|284045440|ref|YP_003395780.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949661|gb|ADB52405.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 23/185 (12%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 + VR + + + P V + E+D Y V L + Sbjct: 60 MDVRMPVLDGIAATRELIARVPAAKVVILTTFEEDDY-------------VIGALRAGAS 106 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 + L + + G LL P + DRL E +L S D Sbjct: 107 GFLLKRSSPEDLRRAIHTVAAGDALLSPSVTRRVIDRLVEQPVL-------RPSSDARLS 159 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ELT RE E L +++G ++ EI L + TV +++ ++ K + R A+ A Sbjct: 160 ---ELTPREQEVLLLMAQGLSNREIVDALAVEETTVKSHVRRVLSKLGVRDRVHAVILAY 216 Query: 242 RNNIV 246 + +V Sbjct: 217 ESGLV 221 >gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1003 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 164 LLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LL+A+ + +L+ RE E L ++ G ++ EIA L I NTV ++ Sbjct: 919 LLSAFHGTHAPQPVQENVISLTEQLSQREQEVLHLLASGHSNAEIAETLIIGLNTVKTHL 978 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +I K T R+ AIA A +++ Sbjct: 979 KNIYGKLGTHNRTQAIAQARTLHLL 1003 >gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 478 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 2/146 (1%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-- 160 ++ V TL S+ D+ + L +++D W Sbjct: 317 RKLRTKSGAVLDTLVFAEAITLEGKPGLLSMFHDITLRKQTEAELLAAIDAVMQDATWFG 376 Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + +A + + +LT RE + L I+EG+ ++EIA+ LG+S+NTV NY Sbjct: 377 RSVVERLLRARRGATAEAPGATLGDLTARERQVLELIAEGQKNEEIALALGLSKNTVRNY 436 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +A++ K + R+ A+ +A ++ Sbjct: 437 VANLYAKIGVQGRAEAVIWARERGVI 462 >gi|226365558|ref|YP_002783341.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244048|dbj|BAH54396.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 208 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E LT +++G T+ E+ L IS TV ++A I K TR+ A++ A+ Sbjct: 143 PEEALTPREAELLTLLAKGMTNKELGKALFISEATVKTHLAHIYSKLGVDTRAAAVSVAL 202 Query: 242 RN 243 R Sbjct: 203 RR 204 >gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505] Length = 230 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + P L F + + + Sbjct: 64 DVVCMDLRMSEGDGLTATRQIVAEREGGVPAVLVVTTFDMDADVFGALEAGADGFILKDC 123 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + L ++ + + A + ++ + LT RE E + Sbjct: 124 EPEELVDAVRRLASGYGLVDQSVTRRVIAEFARRQGRVENREALGV----LTEREREVVQ 179 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + +TV +++ I+ K + R A+ +A RN +V Sbjct: 180 LLAGGMSNAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGLV 230 >gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + EGK + EIA L IS TV ++I I RK R A+ A I Sbjct: 152 LTTREKDVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKKI 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|261493914|ref|ZP_05990423.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496858|ref|ZP_05993227.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307475|gb|EEY08809.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310417|gb|EEY11611.1| putative bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 583 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L +Q+ + + H + L+ RE+E LT IS G +++EIA L IS+ TV+ +I +I Sbjct: 65 LERHQSFVLTQAE-HTDLPYGLSKREIELLTLISSGLSNEEIANELCISKRTVDKHIENI 123 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 KT T++R+ +A+ ++V Sbjct: 124 FAKTHTESRTLLAVFAITEHLV 145 >gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 255 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 154 ILRDRLWEIGLLA-AYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILG 211 + R E+ LA + A ++ G LT RE++ L W + GKT EI I+ Sbjct: 151 VFAARAAELHALALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAAGKTDAEIGRIVS 210 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +I + RK R+ A+ A + Sbjct: 211 ISTPTVRFHITNASRKLGVAGRAQAVHRAATLGYL 245 >gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT 9303] gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus marinus str. MIT 9303] Length = 92 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE+E + +++G T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 HISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMD 70 Query: 243 NNIV 246 + + Sbjct: 71 HGKI 74 >gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 245 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 16/189 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V SD + L +K + L +F + + Y Sbjct: 59 QQMLPDVVISDVMMPRLDGYGLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDY 118 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177 FD + + + + +L++ ++G +A QA S D Sbjct: 119 IPKPFDPDELVARVRNVAQRQHRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKD 178 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 T RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 179 PVV---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235 Query: 238 AYAVRNNIV 246 YA+ + +V Sbjct: 236 RYALEHRLV 244 >gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4] gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4] Length = 220 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT REV+ L ++ G+ + EIA L +S TV ++ I KT TR+ A+ YA + Sbjct: 156 EDGLTAREVDVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYAHQ 215 Query: 243 NN 244 + Sbjct: 216 HG 217 >gi|297625882|ref|YP_003687645.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921647|emb|CBL56204.1| Regulatory protein, LuxR:Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 232 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%) Query: 97 KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 + + + + T L V + I Y + + A + + + + Sbjct: 87 QVHQIDPKITFLALSVSDAAEDVIAVIRAGARGYVTKSISTADLVEAIGRVATGDAVFSP 146 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 RL L A + +S D + L+ RE E + I+ G T E+A L IS T Sbjct: 147 -RLAGFVLDAFSGSISVESIDEDLDR---LSQREREVMKLIARGYTYKEVARELFISIKT 202 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++++++RK R +A +V Sbjct: 203 VETHVSNVLRKLQLSNRHELTKWATDRKLV 232 >gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 207 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 15/171 (8%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141 P ++ M L++ D + V P + + + V Sbjct: 43 QPAVVLMDMRLADGDG--------AQATAEVLAVSPSSRVLVLSASDERDDVLEAVKAGA 94 Query: 142 IGLMLLFPKGRII-------LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 G ++ + + + R LA F+ + LT RE E L Sbjct: 95 TGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRIERDSPAGPTLTERETEIL 154 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 155 RHVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQIGNRVELARYAIEHGL 205 >gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH DNA-binding domain [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 3/153 (1%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 E + + F T + + + + ++ + Sbjct: 66 EACRTIGAESGCRTVILTTFDTDAYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSL 125 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + L+ Y A + D LTGRE E L ++ G ++ EIA L +S Sbjct: 126 LAPSVARR--LVEQYTAGGPRRTAPDPRLDV-LTGRERETLLLLARGLSNAEIAAELVVS 182 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV ++ +++ K + R A+ A +V Sbjct: 183 DHTVKTHVGNVLAKLGLRDRIQAVICAYETGLV 215 >gi|302525216|ref|ZP_07277558.1| predicted protein [Streptomyces sp. AA4] gi|302434111|gb|EFL05927.1| predicted protein [Streptomyces sp. AA4] Length = 511 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGREVE L +++G ++ EIA L +SR TV+ ++ I K TR+ A A+R + Sbjct: 450 LTGREVEVLLQLAQGLSNPEIAAALTVSRKTVSTHLEHIYAKLGVTTRTQAALVAMRRGL 509 >gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 250 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE + L I+EG + +A L +S TV ++ SI+RK + R+ A++ A R Sbjct: 171 DMPLSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGARDRTHAVSKAFR 230 Query: 243 NNIV 246 + ++ Sbjct: 231 SGLL 234 >gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 233 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 3/144 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-- 162 P + F + + + + + ++ +I + Sbjct: 87 PRIIILTTFDLDEYALEAIRAGASGFLLKDAPPEEMLNAIRTVYSGDAVIAPSTTKRLLG 146 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 ++ +S LT RE + + I++GK++ EIA L ++ TV ++ Sbjct: 147 RMITPLPTETLESSPQA-STIASLTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVG 205 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I++K + R + A N +V Sbjct: 206 RILQKFGARDRVQIVVAAYENGLV 229 >gi|21224130|ref|NP_629909.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|256784790|ref|ZP_05523221.1| two-component regulator [Streptomyces lividans TK24] gi|2995293|emb|CAA18322.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +T RE E L ++EG TS EI +L IS TV + A++++K + R YA+ Sbjct: 153 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 212 Query: 242 RNNIV 246 R ++ Sbjct: 213 RAGLI 217 >gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 224 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I+ GK + EIA IL IS V ++ +I +K R+ A+ + Sbjct: 162 PLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICMQ 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803] gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803] Length = 92 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 41/64 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE+E + +SEG T+ EIA L IS+ TV+N+++++ KT +K R + +A+ Sbjct: 11 NVSLSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70 Query: 243 NNIV 246 + + Sbjct: 71 HGKI 74 >gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+Q+ + D + Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+A + Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVARGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283] Length = 249 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 25/197 (12%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYY---------NVLQRPTELF 109 L R + FQ D ++ + + PF + L ++ N++ T + Sbjct: 57 LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLRFTKIFSLSKQYNIVNGFTYVL 114 Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 + L G D + + ++L+ ++++ LA + Sbjct: 115 HDHMNNLALLSVIIKGNDQTALEQRLAAEQGTMQMLLID------FNEQMYR---LAGTE 165 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + K + RE E L W S GKT EIA I GIS +TV +I +++ K Sbjct: 166 GERAPALNQSADKTI-FSSRENEVLYWASMGKTYAEIAAITGISVSTVKFHIKNVVVKLG 224 Query: 230 TKTRSGAIAYAVRNNIV 246 AI V +++ Sbjct: 225 VSNARQAIRLGVELDLI 241 >gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 228 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 8/177 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHT-----LPENITPPAGMD 127 SI S+ P ++ + + D + + P L + + Sbjct: 39 SIFESNPPDLVISDVMMPHMDGFEFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGG 98 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + Y F I + + I + + + Q + + LT Sbjct: 99 DDYLVKPFQPKEILAKVKGQLERSHRIHAEIVRLLQNSGVEQVKIPPPTVTPESQPLPLT 158 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E + +G T+ +I+ L IS TV +++SI K + RS + +A+ Sbjct: 159 PAEERVFWEVIQGYTNKQISDRLFISPRTVQAHLSSIFSKLQLENRSQLVRFALEGG 215 >gi|94984423|ref|YP_603787.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554704|gb|ABF44618.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 214 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + + +L E G ++ + + + P ++ + + Sbjct: 1 MIRVLLVDDHALFRQGLRSLLESEGMR---VIGEAANGREAIRYAADTH-PDVILMDIQM 56 Query: 93 SEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 E D R + ++ Y D A + + Sbjct: 57 PELDGVKATQSILEIDPRARVIMITMYRQDRYVFEAVKAGARGYVLKDADAATLLDAIRR 116 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + ++ D LA + F K ++ K +L RE L +++G ++ Sbjct: 117 VASGEALLDAD-------LAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQ 169 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +IA+ L IS TV N ++ I K R+ A YA+R I Sbjct: 170 DIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|186683493|ref|YP_001866689.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465945|gb|ACC81746.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 206 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + G + +A L IS +TV +++SI +K + +R+ A+A VR + Sbjct: 144 LTPREIEVLGMLGSGLGNKAMAKRLQISEHTVKFHLSSIFQKLSVSSRTEAVAVGVRLGL 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|300741753|ref|ZP_07071774.1| two-component system response regulator [Rothia dentocariosa M567] gi|300380938|gb|EFJ77500.1| two-component system response regulator [Rothia dentocariosa M567] Length = 250 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 15/193 (7%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + +E +V D ++ + ++ NV + F Sbjct: 58 MAEEGTAPQVVLMDVRMPIMDGLEAAKSILELNVPDSRVIMLT-TFDVDEYVYAAVRAGA 116 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDF 184 + + + + + +I RL E + + S ++ Sbjct: 117 SGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSANIAPTSQE 176 Query: 185 E-----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 E L+ RE E L I++G ++ EI+ L +S T+ +++ ++ K + R Sbjct: 177 EPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLAKLDARDR 236 Query: 234 SGAIAYAVRNNIV 246 A+ A IV Sbjct: 237 VQAVIMAYEAGIV 249 >gi|163839607|ref|YP_001624012.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953083|gb|ABY22598.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 219 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 4/162 (2%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF--DVARIRIGL 144 VR L+ + +L + T + + +A + Sbjct: 56 VRMPELNGLEAAKLILAGWYYTKILMLTTFDIDDYVYDALSLGASGFLLKDALADELVSA 115 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + G +L + + L+ + + +S + + LT RE E LT + G ++ Sbjct: 116 VRIVASGEALLAPSVTKR-LIENFAKSRPRSA-ANKTRLNNLTDREREVLTLVGRGLSNQ 173 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L I+ TV +++ ++ K + R A+ A +V Sbjct: 174 EIAAALFIAEQTVKTHVSKVLTKLDLRDRVQAVVLAYDTGLV 215 >gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans] Length = 249 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 29/200 (14%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------------FHTLPENIT 121 D ++ S +P + V ++ V+ + P F + Sbjct: 43 DVLIISSYPDEWVDLYRVNNFQLTDPVILTAFKRTSPFTWDENITLMSDLKFTKIFSLSK 102 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---------------WEIGLLA 166 ++ L + + + +++ + L +RL ++ LA Sbjct: 103 RYNIVNGFTFVLHDHMNNLALLSVIIDNNKQGALEERLSSERGTMQMLLIDINEQMYRLA 162 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 ++ + + K T RE E L W S GKT EIA I IS +TV ++ +I+ Sbjct: 163 GSVSSSRQRHHADEDKPI-FTPRENEVLYWASMGKTYGEIATIASISLSTVKFHMGNIVV 221 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K AI V ++ Sbjct: 222 KLGVSNARQAIRLGVELELI 241 >gi|330899624|gb|EGH31043.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 642 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 13/164 (7%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 L+ +A++++ R E + +LP + + F + IG Sbjct: 490 AKLLGLIAMTQQIGLLLSQARCDEARALLLRSLP--------AASGGALIPF---KALIG 538 Query: 144 LMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + +++ L + LL A S + G D L+ RE+ L I++G + Sbjct: 539 EHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLIAQGCS 597 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 598 NQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 641 >gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 15/202 (7%) Query: 55 YVGASHFLLVRWDLFQEQKL---DSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTE 107 G +++ ++E+ L D +V + PF + ++ + R E Sbjct: 40 IFGVTNYPGEWVKQYREKGLQYTDPVVITSLNRLTPFAWDENLLAGSGFRFSKLFDRARE 99 Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL 164 F +N +L+F R + KG I L Sbjct: 100 -----FGVTNGYTFVLHDYNNNLVTLSFTFTPECRAEATETFIKNKGEISLLLASVHETY 154 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L + + T RE E L W S GKT E A+ILGI TV ++++I Sbjct: 155 LTLTSLSEKNASRSRSENASRFTERENEILYWASVGKTYPETAMILGIKTCTVKFHMSNI 214 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 ++K AI + ++ Sbjct: 215 VKKLGVANARHAIRLGMELQLI 236 >gi|313764565|gb|EFS35929.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313807407|gb|EFS45894.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313816106|gb|EFS53820.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818453|gb|EFS56167.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820216|gb|EFS57930.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822975|gb|EFS60689.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827995|gb|EFS65709.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|314915562|gb|EFS79393.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918484|gb|EFS82315.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314919972|gb|EFS83803.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314925444|gb|EFS89275.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931985|gb|EFS95816.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955854|gb|EFT00254.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958335|gb|EFT02438.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314960110|gb|EFT04212.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314978316|gb|EFT22410.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314987819|gb|EFT31910.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990039|gb|EFT34130.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315084426|gb|EFT56402.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085766|gb|EFT57742.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088816|gb|EFT60792.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315098426|gb|EFT70402.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101218|gb|EFT73194.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108440|gb|EFT80416.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327332048|gb|EGE73785.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327453760|gb|EGF00415.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753578|gb|EGF67194.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] Length = 218 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + +Q V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 11/179 (6%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMD 127 + +V P ++ + + + D +VL+R L P F T T Sbjct: 41 ERMVRELAPRVVLLDVRMPDLDG-ISVLRRLRALPEPPAVAMLTTFDTDEHIGTALRAGA 99 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + ++ + +L G ++ +++ Y + LT Sbjct: 100 AGFLLKDTAPEQLVHAVRVLAAGGSVLSPS--VARTVISGYV-EGGAADTTAATLTGRLT 156 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GRE++ L + EG ++ EIA L + TV ++I++I+ K R A A R +V Sbjct: 157 GRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAGLV 215 >gi|226363539|ref|YP_002781321.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226242028|dbj|BAH52376.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 9/156 (5%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFP 149 S D +L+R L V ++ + A + Y D + + + Sbjct: 71 SGVDATRRLLERHPALRVLVVTMHEDDESLVASVRAGARGYLVKGADPGEVERAVRAVAN 130 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 I+ + A + M S + ELT RE E L ++ G + I+ Sbjct: 131 GEMIL------GAAVAARAMSFMAASRRMEPAVFPELTDREREVLDLVARGYDNASISRR 184 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S TV N++++++ K R AI A + Sbjct: 185 LVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 220 >gi|171913285|ref|ZP_02928755.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 207 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 R L L + +Y + ++ RE E L I++G + +IA Sbjct: 108 TASRDELLTALRRVAAGGSYLPPELEQRLADLRLCVGISMREREILELIAKGHANKQIAA 167 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + IS +TV +++ I+ K R+ A A A+R IV Sbjct: 168 LFAISEDTVKRHVSHILEKLGVHDRAQATAEAIRRGIV 205 >gi|158338160|ref|YP_001519337.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308401|gb|ABW30018.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 238 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I G ++ IA L IS TV ++ SI+ K R+ A A+R+ Sbjct: 176 PLTDRELEVLELIVAGCSNAVIADKLYISVGTVKTHVRSILNKLCADDRTQAAVRALRSG 235 Query: 245 IV 246 +V Sbjct: 236 LV 237 >gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 90 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 43/59 (72%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE++ L +++G T+++IA +L IS+ TV+N++++I++KT TK R + +A++ Sbjct: 11 LSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWALQWG 69 >gi|311064578|ref|YP_003971303.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866897|gb|ADP36266.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 248 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166 V + + D +L + + G ++ P L +++ E G Sbjct: 102 VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 161 Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 A ++ D EL T RE E L I+ G ++ EIA L IS T Sbjct: 162 TDGYADGSSTIPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 221 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++A I+ K + R A+ +A N +V Sbjct: 222 HVAHILAKINARDRVQAVVFAYDNGLV 248 >gi|307324486|ref|ZP_07603693.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889730|gb|EFN20709.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 215 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + E L + +F+S V + L+GRE E L + G T+ EI L Sbjct: 123 DAVQTAARGETVLTPSLAGKLFRSRTV---EPSPLSGREREVLRLVGRGLTNSEIGTELF 179 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV ++ RK R+ A+ A+ + Sbjct: 180 VSEATVKTHLLRSYRKLGVSDRTAAVMKAMERGFL 214 >gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24] gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24] gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24] Length = 221 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ + + + + Sbjct: 96 RAGASGFLLKDASARQLADGVRVVAAGEALLAPSITKRLITEFSKLSETPRLMPSAQAAY 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 156 GDLTDRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215 Query: 244 NIV 246 +V Sbjct: 216 RLV 218 >gi|289768678|ref|ZP_06528056.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698877|gb|EFD66306.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +T RE E L ++EG TS EI +L IS TV + A++++K + R YA+ Sbjct: 154 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 213 Query: 242 RNNIV 246 R ++ Sbjct: 214 RAGLI 218 >gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 5/194 (2%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 + VG + DL +E D I D + + + + L + Sbjct: 27 IDVVGEASTGAEAVDLARETVPD-IALVDVQMPEMDGIEATRRIAADPALSSVRVVILTN 85 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 + + + + + + + ++ + L+A + A Sbjct: 86 YALDEYIFDALRAGASGFLVKDTEPEELIRAVRTVAVGEALLAPNVTRR--LIAEFAA-- 141 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE E +T + +GK+++EI+ +L IS T +++ M K ++ Sbjct: 142 TPRVDGPAPLVSALTPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRD 201 Query: 233 RSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 202 RAQLVVAAYESGLV 215 >gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp. K90mix] Length = 232 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE+E L + G+T+ IA L IS +TV +++ +I RK K R+ AI +A Sbjct: 155 LTQRELEILAMLGSGETNMNIAKQLFISEHTVKSHLYNIFRKIEVKNRTQAINWA 209 >gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 232 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E LT ++EG T+ EIA L +S +TV ++ ++ K + R A+ A Sbjct: 167 PLTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILAYDCG 226 Query: 245 IV 246 +V Sbjct: 227 LV 228 >gi|300791059|ref|YP_003771350.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800573|gb|ADJ50948.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I++G ++ EIA L +S TV ++ I+ K + R A+ A + Sbjct: 153 LTDREREVLVLIAKGMSNLEIADALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL 212 >gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++EG ++ E+A L +S TV +++A I+ K + R A+ A R + Sbjct: 157 LTARELEVLRLLAEGLSNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTGV 216 >gi|284034798|ref|YP_003384729.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814091|gb|ADB35930.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 216 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P L+A N Sbjct: 89 VYDALYAGASGFLLKDVRRDDLVHAVRVVAAGESLLAPS---------VTRRLIADLTRN 139 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ V + LT RE E L + G ++ EIA L +S +TV ++++ + K + Sbjct: 140 RPRAGRV--AELDALTSREREILLLLGRGLSNAEIAAALTVSEHTVKTHVSNTLTKLGLR 197 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A ++ Sbjct: 198 DRVQAVIAAYETGLI 212 >gi|223937694|ref|ZP_03629596.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893666|gb|EEF60125.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 210 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L RE E L W+++GK++ +IA ILGIS TV ++ I K ++R+ A A+ Sbjct: 143 LGLAPREAEVLLWVTQGKSNGDIASILGISEWTVKKHLLHIFEKLGVESRNAATLRALE 201 >gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 361 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + I+ G+ + +IA LG+S TV N+I +I K ++R+ AI A + Sbjct: 297 LTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKLEVESRAQAIVLARKAG 355 >gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] Length = 496 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189 D++ R M L +++D W L AN+ ++ G + +LT R Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 >gi|134097553|ref|YP_001103214.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910176|emb|CAM00289.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G ++ EIA L I TV ++ +++ K + R+ A+ +A + Sbjct: 146 LTEREAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGF 205 Query: 246 V 246 V Sbjct: 206 V 206 >gi|145225590|ref|YP_001136268.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315445943|ref|YP_004078822.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145218076|gb|ABP47480.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315264246|gb|ADU00988.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. Spyr1] Length = 209 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 33/66 (50%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G LT RE E L + G ++ IA L I TV +++SI RK R+ A+A Sbjct: 142 PGARQGLTQRESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAVAT 201 Query: 240 AVRNNI 245 A+R I Sbjct: 202 ALREGI 207 >gi|116620874|ref|YP_823030.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224036|gb|ABJ82745.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 247 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + L+ RE E + +++G + E+A + IS TV N++ +I K R Sbjct: 172 QAPPTRERERSPLSQREREIVALVAQGFKNKEMAEKMFISEQTVKNHLHNIFDKLGVSDR 231 Query: 234 SGAIAYAVRNNI 245 YA+ NN+ Sbjct: 232 LELALYAIHNNL 243 >gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 215 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 49/102 (48%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +L+ + D L + A++ + LT RE++ + ++ G+T++ Sbjct: 113 LLVEAVRAAVRGDALVSPSVTVRLLAHLTRPQRPARRPAEPLTERELQVVRLVARGRTNE 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S +TV ++ ++ RK A + R A+A + IV Sbjct: 173 EIAGELFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWESGIV 214 >gi|145596350|ref|YP_001160647.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145305687|gb|ABP56269.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 268 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186 ++ R + A A + + L Sbjct: 148 GGRAPADPPSGWPAGAAEGAGGAPTVVPAQRGDDPADPAGELAAVPAGGPAREPRPAVGL 207 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE++ L ++EGK++ EI L +S +TV + + RK + R+ A+A R +V Sbjct: 208 TERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGLV 267 >gi|330470066|ref|YP_004407809.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] gi|328813037|gb|AEB47209.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] Length = 228 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 10/150 (6%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 + L V + I Y + T + + + + Sbjct: 86 RSHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAIRRVADGDAVFSP--- 142 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNT 216 LA + + F + D EL T RE E L ++ G EIA L IS T Sbjct: 143 ----RLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKEIARELYISIKT 198 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++++++RK R +A +V Sbjct: 199 VETHVSNVLRKLQMSNRYELSRWAADRRLV 228 >gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 239 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E L I+ G+++ IA +GI+ +TV ++ I+ K R+ A A A+R I+ Sbjct: 146 TPREREVLELIASGQSNKRIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGII 205 >gi|319944660|ref|ZP_08018927.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] gi|319742099|gb|EFV94519.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] Length = 233 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE E + ++ G+++ EIA L ++ +TV ++ +I++K +R YAV Sbjct: 165 ERVHLTAREREIMQCLARGESNKEIARRLDVAESTVKIHVQNILKKLNLSSRVQIAVYAV 224 Query: 242 RNNI 245 N + Sbjct: 225 ENGL 228 >gi|326779789|ref|ZP_08239054.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326660122|gb|EGE44968.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 244 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 7/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 66 DVVLMDIRMPGTDGLAATRMISADPELSAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGA 125 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190 + + + + ++ GL+A + A S + ++ LTGRE Sbjct: 126 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSGEGLDSAEYAERLAALTGRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++D IA L +S TV ++ M K + R+ + A + +V Sbjct: 184 REVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 239 >gi|239939951|ref|ZP_04691888.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986435|ref|ZP_04707099.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++EG T+ EI L I +TV ++ I K R+ A+ A+R+ + Sbjct: 146 LSERETQVLRLVAEGCTNAEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGL 205 Query: 246 V 246 + Sbjct: 206 L 206 >gi|226362510|ref|YP_002780288.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240995|dbj|BAH51343.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 127 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 V L R++L + A A + D LTGRE E L Sbjct: 18 HVDDRAARLRAASALERVLLSGAHANSCVHAGLAARAETACPSDH--DDPLTGREHEILG 75 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I++G ++ EI L ISRNTV ++++I+RK + R+ A+A Sbjct: 76 MIADGASNAEIGRDLFISRNTVRFHVSNILRKMSVNNRTAAVAK 119 >gi|197335823|ref|YP_002157200.1| regulatory protein CsgD [Vibrio fischeri MJ11] gi|197317313|gb|ACH66760.1| regulatory protein CsgD [Vibrio fischeri MJ11] Length = 214 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L ++ G ++ +IA L +S NTV ++ ++ +K K R A+ +A Sbjct: 148 ISLTTRESEILRLLASGASNVDIANSLFVSENTVKTHLYNVFKKLNVKNRLQAMMWA 204 >gi|330969335|gb|EGH69401.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 909 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDF 184 SL + L + L ++L ++ LL A S + G D Sbjct: 788 SLPAASGGALMPFKALLGEHPEWLHEQLVQLPPCRVQAALLEKLPACCTPSPEAAHGGDC 847 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A Sbjct: 848 -LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLG 906 Query: 245 IV 246 ++ Sbjct: 907 LL 908 >gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 217 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 + + Y + F + + G L + + L + + IGL A + D Sbjct: 97 KGANAYLLKKSSYEEMLFAINHVAKGGRYLCDELSMDLIENMNNIGL---DLAGKTRLID 153 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + EL+ RE+E L ISEG T+ EIA L +S+ TV + +++ KT K + I Sbjct: 154 -----EIELSDRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALI 208 Query: 238 AYAVRNNIV 246 YAV+N ++ Sbjct: 209 KYAVKNGLI 217 >gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+Q+ + D + Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|188586689|ref|YP_001918234.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351376|gb|ACB85646.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 212 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 33/74 (44%) Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + + LT RE E L + +G T+ EIA L I TV ++++I+ Sbjct: 132 GQVTKLMMERRENESAYLNLTNREKEVLRLLGKGFTNQEIADELYIGIKTVKTHVSNILD 191 Query: 227 KTATKTRSGAIAYA 240 K K R+ A YA Sbjct: 192 KLELKDRTQAAIYA 205 >gi|119964473|ref|YP_946300.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951332|gb|ABM10243.1| putative Transcriptional regulator, LuxR-family [Arthrobacter aurescens TC1] Length = 424 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S ++ L RE+E L ++ G+ + IA LGIS NTV ++ ++ RK ++R Sbjct: 352 PSTPAGDVAEWGLAARELEVLQLLAAGQRNRTIATDLGISENTVKFHLRNLFRKLDVRSR 411 Query: 234 SGAIAYAVRNNI 245 + AIA A + Sbjct: 412 TEAIALAHSAGL 423 >gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 209 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 19/167 (11%) Query: 87 VRCMALSEKDKYYNVLQ----RP-TELFCPVFHTLPENI--TPPAGMDNRYCSLTFDVAR 139 V + L D + P + H L E + + +G D YC + Sbjct: 55 VVDIGLPGMDGIATAREIKRRWPGVRIVMLTAHDLREEVFASLASGADA-YCLKSASPDL 113 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + + + + +A + + + H LT RE++ L I++ Sbjct: 114 LLLAIRAAAAGSAYLDP-------QVAHHVLGGVRMPEAHS----PLTPRELDILRLIAD 162 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G + +IA LG+S +TV +I I+ + R+ A A+R ++ Sbjct: 163 GLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAAVKALRAGLL 209 >gi|186681901|ref|YP_001865097.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464353|gb|ACC80154.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 240 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + LT RE+E L I G ++ +IA L I+ TV ++ +I+ K R+ A A+ Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234 Query: 242 RNNIV 246 R+ +V Sbjct: 235 RSGLV 239 >gi|271970494|ref|YP_003344690.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513669|gb|ACZ91947.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 8/174 (4%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPAGMDNRYCS 132 V P L+ + + D E V F + + Sbjct: 44 VREHRPDLLLLDIRMPRMDGIAAARVVCEETDTKVLMLTTFDQDDYVYDALHAGASGFLL 103 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + ++ ++ L LT RE E Sbjct: 104 KDVRRDDLVQAVRVVAGGESLLAPSVTRR---LIDDMVRRRARPPAPAAALDMLTARERE 160 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G ++ EIA + +S +TV ++++++ K + R A+ A ++ Sbjct: 161 TLELLGRGLSNAEIAATMVVSEHTVKTHVSNVLTKLGLRDRVQAVITAYETGLI 214 >gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 243 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +I+ G+++ EIA L ++ +TV ++ +++RK +R A +AV N Sbjct: 177 KLSPREREILRFIARGQSNKEIARALELAESTVKIHVQNMLRKLNLSSRVQAAVFAVENG 236 Query: 245 I 245 + Sbjct: 237 L 237 >gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 37/249 (14%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----D 81 + D +I + + M L + +G L ++ + SS + Sbjct: 2 IQRLQDFSEDIIGMTGPRAVWAGMAHLADDLGMP-----FCTLTMARRAPDLRSSQFITN 56 Query: 82 WPFDLVRCM---ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P D + +++ ++ F T P+++ + LT Sbjct: 57 LPAPFQDTYCEGGFINDDPFLSLI--CRDMTAAGFMTDPDDLPEADQRQGAFLDLTRSFG 114 Query: 139 RIRIGLMLLFPKG---------------------RIILRDRLWEIGLLAAYQANMFKSYD 177 + + R I +L GL+A + ++ Sbjct: 115 VGTALCIPVRTTRQSEFGGWVIGGDLRARDVADGREIAAMQLQLAGLIAFERLSVLTRQA 174 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE ECL W+S G +IA L IS + V+ YI + RK +TR A+ Sbjct: 175 NHAHRR--LSPRERECLQWLSAGLRVTQIAHRLDISESAVHLYIKNARRKFGARTREQAV 232 Query: 238 AYAVRNNIV 246 A+A+ + + Sbjct: 233 AHAIVSGEI 241 >gi|317405306|gb|EFV85631.1| nitrate/nitrite response regulator protein [Achromobacter xylosoxidans C54] Length = 223 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 7/132 (5%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 L + + +LT + R G ++ L ++ LAA Sbjct: 93 QALRDGARGYLLKNIDAEALTSAIRRAAAGEPVIAESMTAKLVEQFRGQASLAAQA---- 148 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE + + ++ G ++ IA L +S +TV ++ ++++K +R Sbjct: 149 ---PAGQAERHRLTARERQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSR 205 Query: 234 SGAIAYAVRNNI 245 YAV + + Sbjct: 206 VQVAVYAVEHGL 217 >gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis] Length = 217 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V +L D++ L V + G+ +L P+ I + Sbjct: 88 VLESLRGGACGFLLKDSQPEQLVAAVRALASGVTVLAPEASSI----------MLGAACR 137 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + +L+ RE L I +G T+ EIA L IS +TV Y++ I+RK Sbjct: 138 GTPAAENAVDEVKQLSDREQAVLGLIGQGLTNAEIAGRLFISDSTVKEYVSVILRKLGVA 197 Query: 232 TRSGAIAYAVRNNI 245 R A A + Sbjct: 198 NRVQAAVLAYAAGL 211 >gi|206577986|ref|YP_002236599.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342] gi|288933581|ref|YP_003437640.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|206567044|gb|ACI08820.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342] gi|288888310|gb|ADC56628.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 217 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ ++ ++ E+ ++ A Y A+ + ++ LT RE E L + G T+ Sbjct: 119 LIEGVKAVLNGEQTAELSVMHPAMYAADHASAP----VENSPLTERECEILNELRCGATN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L IS NTV ++ ++ RK + K R+ A+++A + Sbjct: 175 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214 >gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 336 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 4/150 (2%) Query: 98 YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT----FDVARIRIGLMLLFPKGRI 153 Y + P + PV L ++ R L V + L L + Sbjct: 177 YGEPVPGPAHVPEPVLTWLRLSVEHVLEAQARGEPLAEPPRLSVEQGARRLTLRLHQRND 236 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + Q +S F LT +E E L W+ +GK + +I ILG S Sbjct: 237 DGATSAAAGDWMLIMQEASDESVIEAISLSFRLTAKEAEVLYWVIKGKINRDIGDILGSS 296 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 TV ++ + K +TR+ A A A+ Sbjct: 297 PMTVKKHLERVYAKLGVETRTAAAALAMNR 326 >gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG ++ EIA L IS TV + +I+ K + R+ YA+R + Sbjct: 158 LTEREDEVLKLIAEGHSTREIARELTISYKTVERHRENILAKLGLRDRTQVTRYAIRAGL 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|297162250|gb|ADI11962.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 5/142 (3%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + A I + L ++ + Sbjct: 78 PRILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLAAEGESLLFPAAVRSFAA 137 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ D LT RE E L ++ G T+ EIA L I TV +++++ Sbjct: 138 ARGGNKRAREAMDRAA-----LTEREAEVLRLMARGLTNAEIAGHLVIGAETVKTHVSAV 192 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ A+ A + V Sbjct: 193 LAKLGARDRTQAVIAAYESGFV 214 >gi|238061007|ref|ZP_04605716.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882818|gb|EEP71646.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 231 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 10/147 (6%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 + L V + I Y + T + + + + Sbjct: 92 PQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAIRRVADGDAVFSP------ 145 Query: 163 GLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F + D EL T RE E L ++ G EIA L IS TV Sbjct: 146 -RLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVET 204 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 205 HVSNVLRKLQMSNRYELSRWAADRRLV 231 >gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] Length = 205 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 16/178 (8%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 + +V D V + + K P L + T + + Sbjct: 44 ADDAPEVDVVVCDIQMPGVDGITAT---KKLTEAGGPPVLILTTYDTQADILAAVEAGAM 100 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y + ++ + R + + + LLA + L+ Sbjct: 101 GYLLKDSPEEELHEAVLNTAARQRTLAPEV---VNLLAQRVGQ----------PEQSLST 147 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L ++ G ++ E+A L IS TV ++ I +K TR+ A+ A ++ Sbjct: 148 RELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyces roseosporus NRRL 15998] gi|291346329|gb|EFE73233.1| two-component system [Streptomyces roseosporus NRRL 15998] Length = 207 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L ++EG T+ EI L I +TV ++ I K R+ A+ A+R+ + Sbjct: 147 LSERETQVLRLVAEGCTNAEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGL 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 198 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 L + + LT RE++ L +S+G+++ EI L +S +TV + Sbjct: 113 AALADTLTTPRLPALRDTPDGEAPLTEREMQVLRGMSQGQSNGEIGRELFLSEDTVKTHA 172 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + RK + R+ A+A R V Sbjct: 173 RRLFRKLGARDRAQAVALGFRRGFV 197 >gi|119513102|ref|ZP_01632155.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462236|gb|EAW43220.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 240 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + LT RE+E L I G ++ +IA L I+ TV ++ +I+ K R+ A A+ Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234 Query: 242 RNNIV 246 R+ +V Sbjct: 235 RSGLV 239 >gi|317125093|ref|YP_004099205.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589181|gb|ADU48478.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 238 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 + + + T + +++ + + + G Sbjct: 80 ARLAQGSRPGRPRTRILILSASGDSKDVLEAVKAGALGYLVKSAGREEFLAAVRSTAAGE 139 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + RL + L + + ELT RE E L +++ G EIA L + Sbjct: 140 PVFTARLAGLVLGEFRRVRSEAADSASRRAVPELTDRETEILKYVATGMGYKEIAAALFL 199 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S TV N++ +I K R +A I Sbjct: 200 SHRTVQNHVQNIFGKLHLNNRVELARFAYERGI 232 >gi|255325940|ref|ZP_05367030.1| NarL family two-component response regulator [Rothia mucilaginosa ATCC 25296] gi|255296955|gb|EET76282.1| NarL family two-component response regulator [Rothia mucilaginosa ATCC 25296] Length = 287 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 30/210 (14%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + T +Y+ GAS FLL EQ L++I + R A+ Sbjct: 103 MLTTFDIDEYVYSAV-RAGASGFLLKDTPP--EQLLEAIRTVH------RGDAVIAPSAT 153 Query: 99 YNVLQRPTELF---CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155 +L++ + PV T P + PA T A + P G Sbjct: 154 RRLLEQMIPVLDSPAPVVPTAPAAESVPA---------TPPAAGSELPKATFIPAGHASP 204 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 + ++ Y H +L+ RE E L I+ G ++ EI L +S Sbjct: 205 ANSSYQSEPAQDY---------PHRELIEQLSPREFEVLGLIARGLSNAEITRELVLSEA 255 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV +++ ++ K + R A+ A I Sbjct: 256 TVKTHVSHVLAKLGARDRVQAVIMAYEAGI 285 >gi|291298679|ref|YP_003509957.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567899|gb|ADD40864.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 386 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 41/61 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L+ ++ G ++ ++A LGIS TV ++++++RKT T +R+ A +AV + Sbjct: 299 ELTAREKEVLSCLAAGMSNRQVAKSLGISVRTVTVHVSNLLRKTGTGSRTEAALWAVEHG 358 Query: 245 I 245 + Sbjct: 359 L 359 >gi|152971901|ref|YP_001337010.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896480|ref|YP_002921218.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae NTUH-K2044] gi|150956750|gb|ABR78780.1| putative bacterial regulatory protein, LuxR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548800|dbj|BAH65151.1| putative LuxR-family bacterial regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ ++ ++ E+ ++ A Y A+ + ++ LT RE E L + G T+ Sbjct: 119 LIEGVKAVLNGEQTAELSVMHPAMYAADHASTP----VENSPLTERECEILNELRCGATN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L IS NTV ++ ++ RK + K R+ A+++A + Sbjct: 175 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214 >gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 208 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 8/161 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L R ++ + +L + E + + + YC V + + + Sbjct: 56 LPRLDGIAATKQIKEILPEIRVVMLTSHTAETEVLASLSSGADAYCVKGASVDSLIVAIQ 115 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + + +A K L+ RE+E L + EGK++ E Sbjct: 116 AAYEGATYLDP-------QVARVVMEHLKPPTPQTNLGT-LSPRELEVLKLMVEGKSNPE 167 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S NT+ ++ IM K A R A+R+ +V Sbjct: 168 IAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208 >gi|134103124|ref|YP_001108785.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003933|ref|ZP_06561906.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915747|emb|CAM05860.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I G Y + T + + + + G + Sbjct: 86 VFLALSVSDAAEDVIAVIRGGARGYVTKTISGRELADAVCRVAAGDPVFSP---RLAGFV 142 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A S V + LT RE + L ++ G EIA L IS TV +++S++ Sbjct: 143 LDAFAEGPNSAPVGDPELDLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVL 202 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RKT R +A +V Sbjct: 203 RKTQLSNRYELSRWATDRRLV 223 >gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 570 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 9/144 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEI 162 L +F + Y + D + + L++ G +I D R+WE Sbjct: 432 RVLILSMFQDTERAKEIIRNGADGYLLKSIDSRELAESIRLVYRGGTMINHDLFHRMWEE 491 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + GK+F LT RE+E L +S+G IA L +S TV NY + Sbjct: 492 NEETGLVESK------SDGKEFGLTKRELEVLNLLSQGSRYKTIASKLYLSNGTVRNYAS 545 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K R A+ A ++ Sbjct: 546 NLYEKLGVKNREEAVQKAKDTGLL 569 >gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 211 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 28/184 (15%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 + VR + ++ +P V + + +Y N + Sbjct: 53 MDVRMPVMDGVAATRLICQQFPAVKVLMLTTFDDHEYVN-------------QAMRAGAV 99 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 D L + ++ G L P GLL Q Sbjct: 100 GYLLKDTPPEELVQAIQSVQRGYTQLGP-------------GLLQKLQLETPAPTITPPP 146 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AY 239 ELT RE+E L I+ G ++ EIA L IS TV N++ +I+ + + R+ A + Sbjct: 147 GWAELTERELEILDLIATGASNREIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAILVH 206 Query: 240 AVRN 243 ++R+ Sbjct: 207 SLRH 210 >gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu] Length = 275 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 14/170 (8%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRY 130 S++P + +++R P+ + P G+ + + Sbjct: 93 ISNFPAAWREWERTRSTLECNPIIRRCRASVRPLVWDDASFDSAPLFRTALGRAGVRSGW 152 Query: 131 CSLTFDVAR--IRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDF 184 L D + L P RL + + Y + G + Sbjct: 153 SQLVRDSRGSWGVLTLGRTAPHPASCRPYDVEPRLVWLAQMFHYHLSRMCRTGPVGGNEI 212 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 LT E L W +GKTS E+A IL +S TVN ++ +I+ K T ++ Sbjct: 213 HLTEMEKTILRWTVDGKTSGELATILEVSVRTVNFHVQNILMKMNTCNKT 262 >gi|152965166|ref|YP_001360950.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359683|gb|ABS02686.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D L V + G LL P L+ + + Sbjct: 97 VFSALQAGASGFLLKDATPEVLVDSVRAVARGDSLLAPGITR---------RLIEHFVST 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ DV +LT RE E L I+ G ++ EIA L I+ T +++ ++ K + Sbjct: 148 RRRAVDVPAAL-ADLTPREREVLVCIARGLSNQEIAAELFIAEQTTKTHVSRVLTKLGLR 206 Query: 232 TRSGAIAYAVRNNIV 246 R A+ +V Sbjct: 207 DRVQAVVLGYEIGLV 221 >gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] Length = 209 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 19/159 (11%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D +R + D VL E +F + + D+ L ++ + G Sbjct: 67 DTLRSLRTHGVDSRIIVLTVSDEQ-SDIFALMDAGVDGYLLKDSDTADLVENIRKAAKGE 125 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 M+L + L DR E L+ LT RE + L WI+ G ++ Sbjct: 126 MVLSETVQQHLLDRRPENDPLSV------------------LTDRERDVLQWIATGMSNK 167 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L IS TV +I +++RK +R A + Sbjct: 168 QIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206 >gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 2/160 (1%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 VR + + + P + L + + L AR + + Sbjct: 55 VRMPGVDGIEATGMLADDPARVLVLTTFDLDDYVYEALRAGASGFLLKHAPARELLDAVR 114 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + +G +L + L + V LTGRE E L ++ G ++ E+ Sbjct: 115 VVARGDALLAPSI--TKRLIEDFVRARPARAVRPPALTALTGRETEVLLMVARGLSNAEV 172 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L ++ TV +++ ++ K + R+ A+ A + +V Sbjct: 173 ARGLNVAEQTVKTHVSRVLTKLGLRDRAQAVIAAYESGLV 212 >gi|258651012|ref|YP_003200168.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554237|gb|ACV77179.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 222 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA + V K +LT RE E L +S G ++ +I L IS TV ++ +I+ Sbjct: 144 AAAMVRGLHAGPVDADK--KLTSREQEVLELLSRGMSNVQIGKKLFISDTTVKFHVGNIL 201 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK R+ A+ A + ++ Sbjct: 202 RKLGVSRRAEAVHLAGKMGLI 222 >gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 225 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 6/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 V + + ++ P L F+ A + + T ++ Sbjct: 61 VEMPGMDGIEATRRIVADPRSHARVLVLTTFNRDDYLHAALAAGASGFLLKTSRPDQLAA 120 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + + ++ + ++ A LT RE+ L ++ G Sbjct: 121 AVRSVAAGDALLSPEVTR--AVIERAVAREAGPPPAPSPAAQALTERELVVLRLLARGLN 178 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +DEIA L + R TV ++++++ K + R A+AYA R+ + Sbjct: 179 NDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYAYRHGL 221 >gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4] gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4] Length = 220 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 40/61 (65%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ R+++ L ++EG+T+ EIA+ILGIS TV ++++I R TR+GA+ + + Sbjct: 146 LSQRQLDVLHLLAEGRTNKEIAIILGISPFTVRIHVSAIFRALGVATRAGAVTKGIAMGL 205 Query: 246 V 246 V Sbjct: 206 V 206 >gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2] gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] Length = 496 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189 D++ R M L +++D W L AN+ ++ G + +LT R Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 >gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 219 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 46/88 (52%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 ++ L + ++ ++ + LT RE E + I+EG +S EIA +L IS TV Sbjct: 130 IYPDALTTLMREHLHRAGRGEPVPERVLTAREAEVVKLIAEGCSSREIAALLVISTKTVE 189 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + A+I++K + R+ YA+R ++ Sbjct: 190 RHRANILQKLDMRDRTQLTRYAIRTGLL 217 >gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842] gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842] Length = 595 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 350 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 466 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 522 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 523 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 583 EAVQKALEIGII 594 >gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 219 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 12/173 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCS 132 IV D VR S D + R + + + + + Y Sbjct: 54 DIVLCD-----VRMQGASGLDLCLELRGRDPDQKVVMLSVYDDEQYLFQALRVGASGYLL 108 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + L L I + A A + + G LT RE E Sbjct: 109 KSISSDELVRQLELAHRGQTAIDPG----MAARAVDTAARLQRDEFWPGARQGLTQRESE 164 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+++ G ++ IA L I TV ++ SI RK R+GA+A A+R I Sbjct: 165 ILSFVVTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATALREGI 217 >gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] Length = 496 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189 D++ R M L +++D W L AN+ ++ G + +LT R Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 >gi|315080757|gb|EFT52733.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] Length = 228 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + +Q V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|284045809|ref|YP_003396149.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950030|gb|ADB52774.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 381 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 36/54 (66%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE+E L ++EG+T+DEIA L IS TV +++SI+RK R+ A+A Sbjct: 315 LTRRELEVLRLVAEGRTNDEIATALVISVGTVKFHVSSILRKLRVGNRAQAVAR 368 >gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] Length = 592 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 207 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL S D N+ P V + + Sbjct: 53 MDLRFGAGTSGVDATRNLRSLPNPPHVLVVTNYDTDADILDAVAAGA----------AGY 102 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P ++ R G A K L+ RE++ LT ++ G+++ Sbjct: 103 LLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTLVAAGRSN 162 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI L +S TV +++ I K K+R+ AIA A + Sbjct: 163 REIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARARELGTI 205 >gi|300784747|ref|YP_003765038.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794261|gb|ADJ44636.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + V + P + F + + Sbjct: 50 DVVLMDVRMPAVDGIR-ATTHLMSTVDEPPKVIVVTTFENDDYVYDALVAGASGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 I + + ++ + LAA A + LT RE + L Sbjct: 109 RPEEIVAAIRTVVAGESLLFPAAIRR---LAAQHAPAPAGDGLASA---GLTERERDVLR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++ +++ K + R+ A+ A + V Sbjct: 163 LVAAGLSNVEIASELYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFV 213 >gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 228 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 3/175 (1%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + L +V D + + + + L L F + + + Sbjct: 48 RLLPDVVLMDVRMPDMNGIEATRRICGDPALSGVRVLMLTTFDLDEYVYSSLRAGASGFL 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 ++ + ++ ++ L+A + A +S V +T RE Sbjct: 108 LKDVPPTQLLHAIRVVANGESLLAPSVTRR--LVAEFVARPHEST-VASTDLAAVTERER 164 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E LT ++ G ++ EIA L +S TV +I ++RK + R+ + A + +V Sbjct: 165 EVLTLVARGLSNTEIAERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGLV 219 >gi|217974227|ref|YP_002358978.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217499362|gb|ACK47555.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 216 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 87/222 (39%), Gaps = 13/222 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D+ +I + + + + S + V W Q S ++++ L+ + Sbjct: 2 DMQNNIISVGLVEDQQLVRQGIASLLAISDNIRVVWQAEDGQDALSQLANNPVDVLLSDI 61 Query: 91 ALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPA----GMDNRYCSLTFDVARIRIGL 144 + D + +++ + T ++ N + + ++ + Sbjct: 62 RMPNLDGIAMLKQIRQSANSLPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLHAI 121 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + G +I L ++ + +V ++ L+ RE E L++++ G ++ Sbjct: 122 ETVAKGGYLIEPSVLKQMS-------EPKPAPNVGVTRNELLSEREREILSFMAGGFSNK 174 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA + ++ TV N++++I+ K + R+ A+ ++ ++ Sbjct: 175 EIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216 >gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 194 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 165 LAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA ++ DV + LT RE E L +++G ++ EIA LG+S +TV +++ Sbjct: 109 LARQLRDIVAHPDVDRLPQVDVPRLTPRESEVLPLLAQGYSNKEIAKNLGVSPDTVKDHL 168 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A + K R+ A++ A ++ Sbjct: 169 ARLYAKLDAGDRTEAVSRARSIGLL 193 >gi|56751843|ref|YP_172544.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81301073|ref|YP_401281.1| LuxR family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686802|dbj|BAD80024.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81169954|gb|ABB58294.1| transcriptional regulator, LuxR family [Synechococcus elongatus PCC 7942] Length = 91 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 38/59 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 13 LSERELQIVDLVAAGLTNQEIATRLDISKRTVDNHISNILTKTGTDNRVALVRWALQWG 71 >gi|331699969|ref|YP_004336208.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954658|gb|AEA28355.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 542 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L ++ G+++ EIA L I+ TV +++++ K +R+ A A+A + + Sbjct: 482 LSPRELEVLRLVAAGRSNAEIAAELVIAEKTVARHLSNMFVKLDVGSRTAAAAFAFEHRL 541 Query: 246 V 246 + Sbjct: 542 L 542 >gi|320105355|ref|YP_004180945.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319923876|gb|ADV80951.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE E L +++G+++ +IA L IS +TV ++ SIM K R+ A+ A++ Sbjct: 154 DLSPRETEVLRSVAQGRSNRQIADALLISEDTVKGHMKSIMAKLDAGDRTQAVIIAMKRG 213 Query: 245 IV 246 + Sbjct: 214 FL 215 >gi|298292393|ref|YP_003694332.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296928904|gb|ADH89713.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 310 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 20/134 (14%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 V + P+ I P R L++ L+L + + +++ Sbjct: 183 PVRRWLEGRKGEAAAAEPDAIDLPVEGSARRLRLSYVGQIGPEELLLRIVEDDRLPPEQV 242 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L LT RE E L W++ GK + +I ILG+S TVN Sbjct: 243 LRAKL--------------------NLTVREAEVLMWLARGKANRDIGEILGLSPRTVNK 282 Query: 220 YIASIMRKTATKTR 233 ++ I K + R Sbjct: 283 HLEQIYAKIGVENR 296 >gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] Length = 377 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K V + LT RE L ++EG + +I +L +S +TV +Y++S+M K K R Sbjct: 304 KGEKVEKNTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNR 363 Query: 234 SGAIAYAVRNNIV 246 + +A A R ++ Sbjct: 364 TQVVASAFRLGLL 376 >gi|328885811|emb|CCA59050.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 260 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 11/166 (6%) Query: 87 VRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFDVARI 140 V +++ + L R + T+ +N + Y + + Sbjct: 98 VLDISMPRMTGLQAARELSRLKPELRILILTMYDNEQYFFEALKAGASGYVLKSVADRDL 157 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 I E L+ Y + + D +T RE E L ++EG Sbjct: 158 VEACRAAVRDEPFIYPGA--ETALIRTYLDRAEQGRPL---PDKAVTEREEEILKLVAEG 212 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S EI +L IS TV + A++++K + R YA+R ++ Sbjct: 213 HSSKEIGDLLVISPKTVERHRANLLQKLGMRDRLELTRYAIRVGLI 258 >gi|302869871|ref|YP_003838508.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|315501333|ref|YP_004080220.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302572730|gb|ADL48932.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|315407952|gb|ADU06069.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 272 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE++ L ++EGK++ EI L +S +TV + + RK + R+ A+A R Sbjct: 209 IGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRA 268 Query: 244 NIV 246 +V Sbjct: 269 GLV 271 >gi|302545305|ref|ZP_07297647.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462923|gb|EFL26016.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 209 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 14/162 (8%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGL 144 +R + + +L++ + T ++ ++ L + IG Sbjct: 59 LRMGGMDGVEATTQILRKAPACKVVIVTTYEDDSDILRAVEAGAAGYLLKGSSRQELIGA 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + +G +L L K + L+GRE E L + +G T+ Sbjct: 119 VQTAARGETVLTPSL------------AGKLLRTRVAEPSPLSGRECEVLRLVGQGLTNA 166 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI L ++ TV ++ +K R+ A+ A+ ++ Sbjct: 167 EIGAKLFVAEATVKTHLLRSFKKLGVSDRTAAVMTAMERGLL 208 >gi|157412510|ref|YP_001483376.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9215] gi|254526652|ref|ZP_05138704.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|157387085|gb|ABV49790.1| Regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9215] gi|221538076|gb|EEE40529.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 92 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 41/63 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ N Sbjct: 14 MGLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73 Query: 244 NIV 246 + Sbjct: 74 GKI 76 >gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] Length = 212 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + +T V +I G ++ P + +L L Sbjct: 92 VFRAFTHGARGFLEKAASFSEITDAVLQIGAGGTIIAPFAQDVLARELR----------- 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + L+ RE+E L ++G + +IA L IS TV ++ I K Sbjct: 141 ----TRQDTAERPVLSPREIEILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVS 196 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+A A+R + Sbjct: 197 DRASAVAQAIRRGFL 211 >gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense] Length = 272 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 21/231 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 I V + L G + L + + V + +P V Sbjct: 44 AFEQIKAAANVDAA--IRILQAEYGLDFVTYHLAQTIAA--KIDSPFVRTTYPDAWVSRY 99 Query: 91 ALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIR 141 L+ K ++++ E P PE G+ S+ R Sbjct: 100 LLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 159 Query: 142 IGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195 L+ L + L + A+ + Y++H D L+ RE+ECL Sbjct: 160 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 219 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I+ Sbjct: 220 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 270 >gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 11/137 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L I D+ L + + G L P L+ + + Sbjct: 94 VQKLLELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGI---------TTHFLSGFVGS 144 Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 D K L+ RE E L ++EG +++ I IL IS TV + A+IM+K Sbjct: 145 GKPGEDNQDAKKAFSVLSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLD 204 Query: 230 TKTRSGAIAYAVRNNIV 246 + + YA+R ++ Sbjct: 205 LHKVADLVMYAIRAGLI 221 >gi|58616457|ref|YP_195586.1| hypothetical protein p2A60 [Azoarcus sp. EbN1] gi|56315919|emb|CAI10562.1| hypothetical protein p2A60 [Aromatoleum aromaticum EbN1] Length = 432 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 14/203 (6%) Query: 58 ASHFLLVRWDLFQEQKLDS---IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 +S FLL +L D+ +V + R + N +R + C + Sbjct: 230 SSGFLLYAENLDDPLVADARLALVEGSVRAVIPRLQDAICEANALNRRRRVARMQCLLAQ 289 Query: 115 TLPENITPPAGMD--NRYCSLTFDVARIRIGLMLLFPKGRII--LRDRL--WEIGLLAAY 168 P ++ R +R+ + ++ L DR G L Sbjct: 290 AFDVARRRPQALETLERALLQAEPGGMLRVFADEPWHLHDLLQALADRKCAVSPGYLQNL 349 Query: 169 QANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +A ++ V + L+ +E + L ++EG ++ E+A L ++ NTV ++ Sbjct: 350 RAAATRTEPVAPKGPLQDEAMRLSPKEGQILRRLAEGHSNKELARKLFVTENTVETHLRR 409 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K ++R+ A+A A+ ++ Sbjct: 410 IYGKLGIRSRTQAVARALELGLI 432 >gi|290511352|ref|ZP_06550721.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289776345|gb|EFD84344.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ ++ ++ E+ ++ A Y A+ + ++ LT RE E L + G T+ Sbjct: 119 LIEGVKAVLNGEQTAELSVMHPAMYAADHASAP----VENSPLTERECEILNELRCGATN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L IS NTV ++ ++ RK + K R+ A+++A + Sbjct: 175 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214 >gi|256786843|ref|ZP_05525274.1| two-component system regulator [Streptomyces lividans TK24] gi|289770738|ref|ZP_06530116.1| two component system response regulator [Streptomyces lividans TK24] gi|289700937|gb|EFD68366.1| two component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L + G ++ E A L IS TV ++ M K +R+ A+ A + Sbjct: 180 LTGREAEVLRLVGRGLSNAEAADRLFISEATVKTHLNRTMSKLGLTSRAQAVVVAYETGL 239 Query: 246 V 246 V Sbjct: 240 V 240 >gi|66044246|ref|YP_234087.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63254953|gb|AAY36049.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 920 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDF 184 SL + L + L ++L ++ LL A S + G D Sbjct: 799 SLPAASGGALMPFNALLGEHPEWLHEQLVQLPPCRVQAALLEKLPACCTPSPEAAHGGDC 858 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A Sbjct: 859 -LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLG 917 Query: 245 IV 246 ++ Sbjct: 918 LL 919 >gi|317124103|ref|YP_004098215.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588191|gb|ADU47488.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 238 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 6/164 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 VR + + +V RP +F ++ ++ + + T IR G Sbjct: 77 VRMARIGGLEAIRSVKARPQAPKILMFTVWDQDDVAERAIEAGADGFLLKTASPEEIRSG 136 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + + + L + + + + + LT RE + L ++ G + Sbjct: 137 IRNVAAGLGAVSPKT--AAQLFTRLRDDAGSAQRLDAARLVGTLTERERDVLAGLARGLS 194 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + E+A L +S TV ++ S K R+ A A R ++ Sbjct: 195 NAELARELFVSETTVKTHLGSAFAKLGVDNRAQAAVLADRAGLL 238 >gi|297159346|gb|ADI09058.1| putative two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 233 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 10/168 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + + D + + P F + + + Sbjct: 55 DVRMPRLDGVEATRRICAQEGAPKVLILTTFDLDEYAFSALKAGAGGFMLKDVPPGELLA 114 Query: 143 GLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + + ++ L + A + LT RE E + ++ Sbjct: 115 AIRAVHSGDAVVAPSTTRRLLDRFAPMLPGAAGGTGPGGSARPELERLTDREREVMLLVA 174 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G ++ EIA L +S TV ++ I+ K + R + A + +V Sbjct: 175 QGLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYESGLV 222 >gi|66045180|ref|YP_235021.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63255887|gb|AAY36983.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] Length = 222 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP----AGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAMSAGAVGYLLKDASRDEVIDGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L ++ G ++ Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 209 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L I++G + EIA L IS +TV ++ I+ K R+ A A+R Sbjct: 148 PLTPRELDVLRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAAVKALRAG 207 Query: 245 IV 246 ++ Sbjct: 208 LL 209 >gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 592 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 219 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 81/200 (40%), Gaps = 19/200 (9%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110 +Y+ + + + +E I++ + P ++ + + E D Y V Q + Sbjct: 30 DYLEFQGYDVTTAENGKEAL--EILTKEIPDMIICDVMMPEMDGYSLIEKVRQDARTSWV 87 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + + + Y F+ + + + + + G + Sbjct: 88 PVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQASRL----MRHKGNI 143 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +N + + ELT E + + +++G ++ ++A L +S+ T+ +++++++ Sbjct: 144 SLDDSNRIQVPS-----NVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNML 198 Query: 226 RKTATKTRSGAIAYAVRNNI 245 KT R+ +A+ N+I Sbjct: 199 NKTNLHNRTELARWAIENSI 218 >gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 595 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 350 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 466 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 522 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 523 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 583 EAVQKALEIGII 594 >gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 13/153 (8%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-------- 157 + + P++ + + V +G ++ +L Sbjct: 69 VQAIAEIAERSPDSRVLVLSASGEHADVLEAVKAGALGYLVKSAGVDELLEAIRRTARGV 128 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTSDEIAVILGI 212 ++ GL + + D LT RE E L +++G T+ +IA L + Sbjct: 129 AVFTPGLAGLVLGEYRRLAETPKPADGSPAVPALTERETEVLRLVAKGMTARQIAAKLVV 188 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S TV +++ + +RK RS + YA+ + Sbjct: 189 SHRTVESHVQNTLRKLQLHNRSQLVRYAIEQGL 221 >gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 220 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG T+ E+A L IS TV N+ ++M+K + I YA R + Sbjct: 153 LTAREQEVLRMLAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGL 212 Query: 246 V 246 + Sbjct: 213 I 213 >gi|71279999|ref|YP_268149.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71145739|gb|AAZ26212.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 215 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 44/77 (57%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A + V+ + +LT RE L+++++GKTS EIA IL IS TV + ++ K Sbjct: 137 AKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLG 196 Query: 230 TKTRSGAIAYAVRNNIV 246 + + I+YAV++ I+ Sbjct: 197 IHSLAKLISYAVKHGII 213 >gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 213 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 16/179 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMD 127 E++ +V D+ ++ + + + + ++ A Sbjct: 43 ERESVDLVMLDYSMP-----GMNGVEGIPTAIAAARGTPVAIMSGVADDDAVRACIAAGA 97 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + T + + L+ G + + L + A + D T Sbjct: 98 RGFLPKTLESRVFIQAVGLVGAGGTYVPAEF---AALPSKPAAPATPTLDPSL-----FT 149 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L I G ++ EIA L + T+ ++ I +K K RS A AVR +V Sbjct: 150 SREMEVLALIVAGASNKEIARQLDLQEVTIKLHLTRIFQKLGVKNRSHAAVTAVRGGLV 208 >gi|312196401|ref|YP_004016462.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227737|gb|ADP80592.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 251 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R + R +AA A+ ++ D LT RE E L ++ G+T+ EI Sbjct: 151 LAEAVRAVARGETVLAPPVAARLASRLRAPD-----PVTLTRRETEVLAAVARGRTNAEI 205 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I TV ++ + K R+ A+ A+ ++ Sbjct: 206 GRELFIGEATVKTHLLRVFAKLQVDDRTHAVTAALERGLL 245 >gi|300087810|ref|YP_003758332.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527543|gb|ADJ26011.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 228 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 8/169 (4%) Query: 83 PFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPEN----ITPPAGMDNRYCSLTFD 136 P +V +A+ + +++ + T ++ + Y Sbjct: 53 PDVIVMDIAMPNMNGIEATREIKKFLPTTAILILTAYDSDQYIMALIEAGAAGYMLKNVR 112 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195 ++ + + G IL+ + + N K D LT RE+E L Sbjct: 113 GNQLIDAIRAV-HSGESILQPSTTRRVINQLSKNNPIKREDTESDAPAHALTEREMEVLR 171 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++G ++ + A L +S TV ++++I +K +R+ AI Y ++ Sbjct: 172 LAAKGVSNRDTAEQLYLSSRTVQTHLSNIFKKLNVASRTEAILYGLKRG 220 >gi|294053956|ref|YP_003547614.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613289|gb|ADE53444.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 218 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 46/135 (34%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + P + + + V G + + + + E+ Y + Sbjct: 78 IVSEFPNAKVILLSVFDSEEDIWNAVQAGVKGYLTKKAGEIEDVMEAIHEVARGGTYFPS 137 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE+E L ++ G ++ EI L +S V +I ++ K Sbjct: 138 GLAQKLERRRSQKGLTDREMEVLKLLASGLSNKEIGSELDLSVAMVKLHIINLREKLDAV 197 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A + I+ Sbjct: 198 DRTQAVVQAFKRGIL 212 >gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 154 ILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVIL 210 + +L LLA A+QA + D + LT RE ECL + ++G TS IA L Sbjct: 133 LAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKNIAAAL 192 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TVN ++ S RK + R A+ + ++ Sbjct: 193 NRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 228 >gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] Length = 233 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + ++ + + ++ LA + + + D L+ RE+E L W + GK+ +I I Sbjct: 134 KKLVPNVIKDLQSLAVHIHDNVMTSDTISRMLYHPTLSSRELEILQWAAAGKSQQDIGDI 193 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV ++ S K T A+ A+ ++ Sbjct: 194 LSISHRTVEVHLRSSREKLNALTTPQAVGRAIGIGLI 230 >gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15] gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15] Length = 592 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDAQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|21222068|ref|NP_627847.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|4753877|emb|CAB42040.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L + G ++ E A L IS TV ++ M K +R+ A+ A + Sbjct: 180 LTGREAEVLQLVGRGLSNAEAADRLFISEATVKTHLNRTMTKLGLTSRAQAVVVAYETGL 239 Query: 246 V 246 V Sbjct: 240 V 240 >gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] Length = 244 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDF 184 D C + AR + + + ++ + + + F + Sbjct: 115 ADGLVCQVFGPQARNALVSIGFHHDRPRPSDAEVLDLHVASQFAHMRFCALVAGPAAPNR 174 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L WI+ GK++ IA I+G+SR+TV+ + + K R+ A V Sbjct: 175 RLSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFG 234 Query: 245 IV 246 ++ Sbjct: 235 LI 236 >gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. ND132] gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans ND132] Length = 226 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D + + + K L R + + + Y Sbjct: 53 DIVLVDISMPDKSGIQMIRELKDELPLTR--FVIISMHSEADYIVEAFRAGATGYIIKES 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 ++ GL + + L L + + Q ++ LT RE E + Sbjct: 111 AAGQLLKGLNTVAGGN-LFLDSALSQEVVFKLLQTKTGEADGQD-DPYATLTPREQEVMR 168 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG T+ +A L IS TV N+ ++M+K K+ + YA R ++ Sbjct: 169 MLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVELVRYAARLGLI 219 >gi|298249444|ref|ZP_06973248.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547448|gb|EFH81315.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 14/172 (8%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143 VR + +L++ + + T ++ + Y VA + Sbjct: 67 VRMPVIDGVTATAQILKQLPDCCILMLTTFDDDAYVRDALRTGARGYLLKDMPVADLAKA 126 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---------DFELTGREVECL 194 + + + I +A A + + + + LT RE E L Sbjct: 127 IFAASRGVYQLDAAVIERI--VAPVGATIKPTTEQPLAPSPTRTGSVTEARLTRREQEIL 184 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G T+ E+A L IS TV N++A++ + + R+ A+ Y ++ Sbjct: 185 RLVATGATNREVAERLVISEGTVKNHLANLFSRLGLRDRTQAVLYTREQGLL 236 >gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G T+ E+A L IS TV + IMR+ +R+ + YA +N + Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 216 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 83/199 (41%), Gaps = 19/199 (9%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110 +Y+ + + + +E I+++ P ++ + + E D Y V Q + Sbjct: 27 DYLEFQGYEVTTAENGREAL--EILANQVPDMIICDVMMPEMDGYAFVEKVRQDRRLSWI 84 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + + + Y F+ + + + R + + + Sbjct: 85 PVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELAAQVESSLSQARRL----MEHKAGI 140 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +A+ + + ELT E++ + +++G ++ EIA L +S+ T+ +++++++ Sbjct: 141 SLDEAHKIQVPS-----NVELTPTELKVIQLVAQGLSNREIASKLNVSQRTIESHVSNML 195 Query: 226 RKTATKTRSGAIAYAVRNN 244 KT+ R+ +A+ +N Sbjct: 196 NKTSLHNRTELARWAMESN 214 >gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 92 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 41/63 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ + Sbjct: 14 MGLSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 73 Query: 244 NIV 246 + Sbjct: 74 GKI 76 >gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 208 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 EL+GREVE L +++G ++ IA L +S TV +++ K +R+ A+A A Sbjct: 143 PRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAAR 202 Query: 242 RNNIV 246 ++ Sbjct: 203 ERGLI 207 >gi|294630527|ref|ZP_06709087.1| two-component system response regulator [Streptomyces sp. e14] gi|292833860|gb|EFF92209.1| two-component system response regulator [Streptomyces sp. e14] Length = 206 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 7/142 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + + V +I + ++ I+ L ++ Sbjct: 66 PKVVVITTFENDDYVTAALSAGASGFVLKRRPVRQIAEAVRIVAAGETILFPAALRQM-- 123 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LT RE L ++ G+++ EIA L +S TV ++ ++ Sbjct: 124 -----VTARPLSSAEALPKAALTEREEAVLRLMATGQSNPEIARALTVSLETVKTHVGNV 178 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R+ A+ A + +V Sbjct: 179 LSKLGAQNRTHAVVIAYESGLV 200 >gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 225 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 14/136 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L T D L + + G +L P + A Sbjct: 92 VFALLEAGATGYLLKDVNCQELIRSIYSVDKGEPVLCPS-------------VAAKVMQR 138 Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + D + LTGREVE LT ++ G + EIA L +S+ TV ++ASI K Sbjct: 139 FRRGEDSETNNAVDSLTGREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLASIFSKLKV 198 Query: 231 KTRSGAIAYAVRNNIV 246 +R+ AI +A++ ++ Sbjct: 199 GSRTEAILFALKEGMI 214 >gi|295836117|ref|ZP_06823050.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197695212|gb|EDY42145.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 259 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + LT REVE L I++G ++ +IA L +S TV +I ++ K + Sbjct: 178 LQKDGAGTVPPDGLTAREVEVLVLIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRD 237 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ YA + +V Sbjct: 238 RAQAVRYAYLHGMV 251 >gi|254361295|ref|ZP_04977438.1| possible bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica PHL213] gi|153092791|gb|EDN73834.1| possible bifunctional amino acid-binding protein/DNA-binding protein [Mannheimia haemolytica PHL213] Length = 583 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L +Q+ + + H + L+ RE+E LT IS G ++++IA L IS+ TV+ +I +I Sbjct: 65 LERHQSFVLTQAE-HTDLPYGLSKREIELLTLISSGLSNEDIANELCISKRTVDKHIENI 123 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 KT TK+R+ +A+ +++ Sbjct: 124 FAKTHTKSRTLLAVFAITEHLI 145 >gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] Length = 254 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLM--LLFPKGRIILRDR---LWEIGLLAAYQANM---FKSYDVHWGKD 183 S+ + R + L K +L+D L E +++ S ++ Sbjct: 130 SVPIHLPRGGFASLTGLRTGKASSVLQDAQQTLSEFSVISHALQEAAYPLFSKELRTYPY 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL W +EG T+ +IA L S V+ ++AS M K K R A+ A Sbjct: 190 IHLTKRERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVRATHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 11/137 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L I D+ L + + G L P L+ + + Sbjct: 94 VQKLLELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGI---------TTHFLSGFVGS 144 Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 D K L+ RE E L ++EG +++ I IL IS TV + A+IM+K Sbjct: 145 GKPGEDNQDAKKAFSILSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLD 204 Query: 230 TKTRSGAIAYAVRNNIV 246 + + YA+R ++ Sbjct: 205 LHKVADLVMYAIRAGLI 221 >gi|330887817|gb|EGH20478.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 903 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 17/178 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135 D ++ ++ + + + + E+ P+ + + I R SL Sbjct: 726 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 785 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188 I L + L ++L ++ LL A+ + + G D L+ Sbjct: 786 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTLEPAHGSDC-LSV 844 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 845 RELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 902 >gi|282854131|ref|ZP_06263468.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583584|gb|EFB88964.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|313813050|gb|EFS50764.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|314923106|gb|EFS86937.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314966874|gb|EFT10973.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981217|gb|EFT25311.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091787|gb|EFT63763.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315103290|gb|EFT75266.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327327699|gb|EGE69475.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 218 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 67/176 (38%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + GL + ++ + + + +Q + V K +LT RE Sbjct: 100 MLKNAEAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 10/150 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-------LRDR 158 + V P + + + V G ++ + + + R Sbjct: 66 AQATTEVLAVSPSSRILVLSASDERDDVLEAVKAGATGYLVKSASKQELGDAVRATAQGR 125 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRN 215 LA F+ + + LT RE E L ++++G T+ +IA L +S Sbjct: 126 AVFTPGLAGLVLGEFRRIEQSSPAGADGPTLTERETEILRYVAKGLTAKQIASRLSLSHR 185 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV N++ + RK R YA+ + + Sbjct: 186 TVENHVQATFRKLQVGNRVELARYAIEHGL 215 >gi|317125782|ref|YP_004099894.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589870|gb|ADU49167.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 978 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L R+ +L + VH LT REV+ L ++EG ++ EI L +S Sbjct: 884 LARRIGHWAVL-RDLDTVPAPDAVHPPLPNGLTEREVDVLRLVAEGLSNREIGERLFLSA 942 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 NT N++ SI+ KTA R+ A +A + ++ Sbjct: 943 NTAANHVRSILGKTAAPNRTKAAIFATEHGLL 974 >gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+Q+ + D + Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 220 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 5/153 (3%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 E + + P + I + R L I + +G + Sbjct: 69 EAIRALKEKKNPVPIIILTTFNDENLIREGLALGARGYLLKDSTREELIRTVEAAIRGEL 128 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +L+ + G++ + +S + + +T RE+ L ++ G TS EIAV +GI+ Sbjct: 129 LLQPEI--SGIIFGAKKESKESNNTF---NAGITERELFVLQAVARGCTSKEIAVDMGIA 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ +I K ++R A+A A+ I+ Sbjct: 184 ERTVKAHLTNIYSKLKVESRPQAVAVAIEQGII 216 >gi|218459661|ref|ZP_03499752.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5] Length = 65 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E + W++ GKT+ EI ILGIS TVN +I++ K + + +A A+RN I+ Sbjct: 5 TPRELEIIGWMAAGKTAAEIGAILGISPITVNTHISNAKAKLSVFKETALVAAALRNGII 64 >gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 248 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDF 184 D C + AR + + P + ++ + + + F + Sbjct: 119 ADGLVCQVFGPQARNALVSIGFHPDRPRPTDAEVLDLHVASQFAHMRFCALVAGPAAPNR 178 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L WI+ GK++ IA I+G+SR+TV+ + + K R+ A + Sbjct: 179 RLSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGLAFG 238 Query: 245 IV 246 ++ Sbjct: 239 LI 240 >gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 215 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF----DVARI 140 D + S D +VL P + + +P + +R F + + Sbjct: 53 DWQQLDGDSRWDALGDVLGDPMQTMDTILFNVPTGLDIERQALDRGVRGIFRQNQPLKLL 112 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 G+ + R + E L Q GK+ L+ RE E L I++G Sbjct: 113 MRGITAVLEGELWYSRRAISE--RLRQNQLTQASPKAASAGKEM-LSAREREVLLLIAQG 169 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++DE+ L IS +TV ++ +I K R A +AV+N Sbjct: 170 LSNDEVGDKLCISLSTVKKHLCNIYAKLKISNRIQAAFWAVQN 212 >gi|256395191|ref|YP_003116755.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361417|gb|ACU74914.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 7/162 (4%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 ++ + ++ D VL E V + L V RI +G Sbjct: 58 AEVTARLVAADPDVKVLVLSASGEQ-QDVLQAVKAGAIGYLVKSASREELLAAVERIAVG 116 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + P ++ ++ ++ + LT RE E L +++G + Sbjct: 117 DPVFTPGLAGLVLGEFRKLAMVPPGAGAGTAADTPR------LTDRETEVLRLVAKGLSY 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +IA L +S TV N++ + + K R + YA+ + Sbjct: 171 KQIADRLVLSHRTVQNHVQNTLNKLQLHNRVELVRYAIAQGL 212 >gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579] gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264] gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579] gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264] Length = 595 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 350 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 466 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDAQK 522 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 523 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 583 EAVQKALEIGII 594 >gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] Length = 214 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F+TL ++ L V + G + PK +L +L G Sbjct: 92 FYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGG--------- 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + +L+ RE+E L +++G T+ EI+ + +S TV + + I +K KT Sbjct: 143 ----EEEDRSYQQLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKT 198 Query: 233 RSGAIAYAVRNNIV 246 R+ + YA+R+ ++ Sbjct: 199 RADLVDYALRHKLL 212 >gi|239933574|ref|ZP_04690527.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441947|ref|ZP_06581337.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344842|gb|EFE71798.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 231 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + G R L V + G LL P GL+ + A Sbjct: 93 VAEALRAGASGFLGKGARPEELLGAVRTVAAGDALLSPSATR---------GLIRRFLAQ 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE + L ++ G +++EIA L +S T ++ M K A + Sbjct: 144 PEPCTAAVHERLECLTRRERDVLGLVALGLSNEEIAERLFVSPLTAKTHVNRAMTKLAVR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 204 DRAQLVVVAYQCGVV 218 >gi|70732431|ref|YP_262193.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346730|gb|AAY94336.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 911 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 8/140 (5%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLA 166 L P + +L V M L +R++L + LL Sbjct: 772 ALLLAAGRGPQARQDLAQALEAGVGGAMQPFMALLHGHPGWMREQLQQGVSTALTQALLE 831 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A + ++ + L+ RE+ L I++G ++ EI+ L IS +TV + + I Sbjct: 832 RLPAASREPQEIAAHNE-SLSSRELSVLQLIAQGCSNQEISERLFISLHTVKTHASHINS 890 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K + R+ A+A A ++ Sbjct: 891 KLGVERRTQAVARAQELGLL 910 >gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 245 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 10/186 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V +D + L +K + L +F + + Y Sbjct: 59 QQMLPDVVITDVMMPRLDGYGLLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 118 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD 183 FD + + + + + +L++ ++G +A ++ + K+ Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKE 178 Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA Sbjct: 179 PVVHSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYA 238 Query: 241 VRNNIV 246 + + +V Sbjct: 239 LEHRLV 244 >gi|330981978|gb|EGH80081.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I ++ + + L ++ + LT RE+E L W +GKT+ EI Sbjct: 143 LGEVARPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGA 236 ++I +S +TV ++ +I K R+ A Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQA 229 >gi|311113859|ref|YP_003985081.1| DegU family transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|310945353|gb|ADP41647.1| transcriptional regulatory protein DegU [Rothia dentocariosa ATCC 17931] Length = 241 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 15/193 (7%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + +E +V D ++ + ++ NV + F Sbjct: 49 MAEEGTAPQVVLMDVRMPIMDGLEAAKSILELNVPDSRVIMLT-TFDVDEYVYAAVRAGA 107 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDF 184 + + + + + +I RL E + + S V Sbjct: 108 SGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSASVAPTPQE 167 Query: 185 E-----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 E L+ RE E L I++G ++ EI+ L +S T+ +++ ++ K + R Sbjct: 168 EPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLSKLDARDR 227 Query: 234 SGAIAYAVRNNIV 246 A+ A IV Sbjct: 228 VQAVIMAYEAGIV 240 >gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 80/217 (36%), Gaps = 11/217 (5%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R++ D + AL E + V + ++ + ++ P +V +A+ Sbjct: 5 RILLADDHTVVRDGLRALLER---EDDMTVVGEAADGRESIRMAETESPDVVVMDLAMPN 61 Query: 95 KDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + + H+ + + L + I + Sbjct: 62 MNGMEATRRILASTSCAGVVILSMHSDESYVLGALKAGAKGYLLKDSMRGEVIQAIRAVS 121 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +GR L ++ I + + + + D L+ RE E L I+EG+++ E+A + Sbjct: 122 EGRSFLTKKIARI--MQEDYVSRLQQRGLEDRYDL-LSDREREVLQMIAEGRSNKEVANL 178 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV + A I++K + I YAVR I+ Sbjct: 179 LNISPTTVETHRAHILQKLDIHSVPELILYAVRKGII 215 >gi|319794782|ref|YP_004156422.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597245|gb|ADU38311.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 235 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F L + L+ + I G + P +G +AA Q + Sbjct: 104 IFAALRAGAIGYLLKERDDLELSIALRSIEQGGAPIDPSIAR------RILGWIAAQQTS 157 Query: 172 MFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + D LT RE + L +S+G ++ ++A L ISR TV + +I RK A Sbjct: 158 LSAVLASDAPSPLPVALTPRERKILELVSQGLSNRDMAESLSISRLTVECHTKNIYRKLA 217 Query: 230 TKTRSGAIAYAVRNNIV 246 +R+ A+ R+ ++ Sbjct: 218 VTSRTEAVFQGRRHGLL 234 >gi|289679770|ref|ZP_06500660.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] Length = 188 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 25 RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 84 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L ++ G ++ Sbjct: 85 QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNR 138 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 139 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 180 >gi|262042600|ref|ZP_06015756.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329998588|ref|ZP_08303172.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] gi|259040034|gb|EEW41149.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538607|gb|EGF64707.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] Length = 182 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ ++ ++ E+ ++ A Y A+ + ++ LT RE E L + G T+ Sbjct: 84 LIEGVKAVLNGEQTAELSVMHPAMYAADHASTP----VENSPLTERECEILNELRCGATN 139 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L IS NTV ++ ++ RK + K R+ A+++A + Sbjct: 140 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 179 >gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 191 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 9/123 (7%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 Y + + + + +L Y+ ++ D+ Sbjct: 77 RAGARGYLLKDSGAGELVTAIRAVAGGESYLTPA--VSNAVLDDYRKHVTNPIDL----- 129 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L ++EGKT+ EIAV+L +S TV+ + IM K + + + +AVRN Sbjct: 130 --LSSREREVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLNLHSINELVRFAVRN 187 Query: 244 NIV 246 +V Sbjct: 188 GLV 190 >gi|121606230|ref|YP_983559.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120595199|gb|ABM38638.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] Length = 275 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 R R L LL P + R + + D+H LT RE E + W+ Sbjct: 159 ERDRERLELLRPHLAFLYRHARHARAAVTLEEGEAPLPPDIHAP---GLTQREAEVMHWL 215 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + GK EIA +L IS TV ++ I K +TR+ A+ A+ Sbjct: 216 ACGKMDAEIAALLAISPRTVQKHLEHIYVKLGVETRTAAVMRAL 259 >gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 221 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 7/171 (4%) Query: 83 PFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DV 137 P + + + + D ++ T+ V T + MD + Sbjct: 50 PTVALMDIQMPQMDGIEATKLIASTTQTKVIVLTTFNRDDYLFDAMDAGASGFLLKNAEP 109 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195 + + + ++ + ++ A S LT RE + L Sbjct: 110 ELLATAVHQVAAGNGLLSPEVTLKLIQRNTGAAQSTPSAAATAEAQLLEALTERERQVLG 169 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ GK + EIA +LG+S TV ++++++ K + R + +A R ++ Sbjct: 170 ELATGKNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHRAGLI 220 >gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 276 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 4/148 (2%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 R V L +I + R + T A R L + D Sbjct: 130 ITFGDRLLHAATAVATRLGRDIEVEEEVQRRMAAPTAVPAAERGDLHAELTAIAGSITDE 189 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 LLA + D+ LT RE++ L +SEG T+DEI+ LG+ NTV Sbjct: 190 TARQRLLA-VCERLRPELDLPG---VALTPREIDVLRLVSEGCTNDEISDRLGLLPNTVK 245 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 +Y+ MRK A R A+ A ++ Sbjct: 246 SYLKHAMRKLAVSNRVQAVNRARAAGLL 273 >gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E LL A+Q+ + D + Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D + LT RE + L +++G T+ +IA L +S TV N++ S +RK R Sbjct: 149 SEDAAGAEPPRLTERETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRV 208 Query: 235 GAIAYAVRNNI 245 YA+ + + Sbjct: 209 ELARYAIEHGL 219 >gi|270490280|ref|ZP_06207354.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27] gi|270338784|gb|EFA49561.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27] Length = 104 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + + K + RE E L W S GKT EIA+ILGI ++TV +I +I+RK Sbjct: 25 HHENNTLNKKENKREIFSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLG 84 Query: 230 TKTRSGAIAYAVRNNIV 246 AI + ++ Sbjct: 85 VLNAKHAIRLGIELQLI 101 >gi|256389895|ref|YP_003111459.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356121|gb|ACU69618.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 234 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 3/157 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 A + + P + F + + + + ++ Sbjct: 75 AAAITSAIDAPRETPRIIILTTFDLDQYVYAAITAGASGFLLKDVSPEHLVAAVHMVRAG 134 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209 ++ L+ + KD LT RE E L + G ++ E+A Sbjct: 135 DAMLAPAITRR--LVERFAVPTVNPRTEALHKDLATLTPREREVLGLLGRGLSNAELAAR 192 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV ++A I+ K + R+ A+ A ++ Sbjct: 193 FHLSEATVKTHVARILAKLNLRDRAQAVVVAYETGLI 229 >gi|148557613|ref|YP_001265195.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1] gi|148502803|gb|ABQ71057.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1] Length = 222 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE ECL W+S GKT+ E A ILG+S+ TV ++ + + + + A A+R + Sbjct: 162 LRSRERECLVWLSLGKTAWETAAILGLSQRTVEYHLNNAVARLGAANKVHAAVIAIRAQL 221 Query: 246 V 246 + Sbjct: 222 I 222 >gi|319942139|ref|ZP_08016457.1| two-component system response regulator NarL [Sutterella wadsworthensis 3_1_45B] gi|319804349|gb|EFW01233.1| two-component system response regulator NarL [Sutterella wadsworthensis 3_1_45B] Length = 226 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 14/132 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 F + D + + V G + + P + Y + Sbjct: 101 FFSCIRAGADGYFLKDMEPEKVLYCVRESLEGRLTVDP--------------AMVRYLTD 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + + LT RE + L+ I+ G T+ I L IS TV ++ +++K Sbjct: 147 LLRGKAPKVEETVSLTDREEDVLSCIARGMTNKMIGRELKISDGTVKGHVKHLLKKLGFN 206 Query: 232 TRSGAIAYAVRN 243 +R A +A Sbjct: 207 SRVEAAVWAAER 218 >gi|218675092|ref|ZP_03524761.1| LuxR family transcriptional regulator [Rhizobium etli GR56] Length = 81 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 40/78 (51%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + ++ G +T RE E + W++ GKT+ EI IL IS TVN +IA+ K Sbjct: 3 CDDAARADHRRAGAMSAVTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKL 62 Query: 229 ATKTRSGAIAYAVRNNIV 246 + +A A+RN I+ Sbjct: 63 GVFKETALVAAALRNGII 80 >gi|227834238|ref|YP_002835945.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183272|ref|ZP_06042693.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455254|gb|ACP34007.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 212 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EI V L +S TV +++ I K ++R+ A+A A + Sbjct: 152 LTPRELEVLKLVAAGSSNREIGVELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|262201684|ref|YP_003272892.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085031|gb|ACY20999.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 231 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T A + + + G + RL + Sbjct: 92 PVFLALSVSDAAEDVIATIRAGARGYVTKTISGADLADAVRRVA-DGDAVFSPRLAGF-V 149 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + LT RE+E L ++ G T EIA L IS TV + +++ Sbjct: 150 LDSFTGKSSAPEPPLDPELDSLTRRELEVLRLLARGYTYREIAEELFISIKTVETHASNV 209 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 +RKT R+ +A +I Sbjct: 210 LRKTQQSNRNALTRWAATRHI 230 >gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 3/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + ++ +I + + Sbjct: 88 PAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALVAAIRVVARGDGLIAPELTRRV-- 145 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +AA+ + ELT RE E L ++ G + EIA L + TV +++ + Sbjct: 146 IAAFAGPGGEPTTTAVALP-ELTPREHEVLVLVASGANNAEIAAALRLGEATVKTHVSRV 204 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A + +V Sbjct: 205 LAKLGLRDRVQAVVFAYEHGVV 226 >gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V +R G LL P L +R + Sbjct: 92 VYAALSAGASGFLLKDVSPEHLVAAVRMVRDGDALLAPSITRRLVER---------FVGR 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + +H LT RE+E L +++G ++ E+A L +S TV ++A I+ K + Sbjct: 143 DGDTTAIHRDL-AALTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLR 201 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 202 DRVQAVIVAYETGLV 216 >gi|220906489|ref|YP_002481800.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863100|gb|ACL43439.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 236 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L I EG ++ IA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 174 PLTERELEVLQLIVEGDSNALIAEKLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 233 Query: 245 IV 246 ++ Sbjct: 234 LI 235 >gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 215 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 43/88 (48%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + ++ D LT RE E L I+EG ++ EIA L IS TV+ Sbjct: 126 LYAGAITALIRDFLHRARQGGEPPDSILTPREEEVLKLIAEGYSTREIAATLTISAKTVD 185 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +I+ K + R YA+R ++ Sbjct: 186 RHRTNILAKLGLRDRLALTRYAIRAGLI 213 >gi|71068215|gb|AAZ23070.1| possible response regulator [Streptomyces fradiae] Length = 241 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 5/174 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + + + F A + + Sbjct: 55 DVVLMDIRMPVMDGLEAAR--RVLAQAADCRVIMLTTFDLDHYVYAALAAGASGFLLKDV 112 Query: 136 DVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 A + + L+ ++ RL E A + LT RE E Sbjct: 113 TPAHLAAAVRLVGTGDALLAPSITRRLVERFTSGARGTGTGAATPAVHRDLAALTPRERE 172 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LT + G ++ E+A L +S TV +++ I K A + R+ A+ A +V Sbjct: 173 VLTLMGRGLSNAELARELTLSEATVKTHVSRIFAKLALRDRAQAVVLAYETGLV 226 >gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8] gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8] Length = 499 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 6/218 (2%) Query: 33 LARMIPLDCTVSWTMR-MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 R+ P+ T+S T + + + A+ R E L + + +D R MA Sbjct: 272 AFRLAPVPMTLSSTTGELLEVNDAFVATTGYDARTLARDEDALAQLWTDPQAYD--RAMA 329 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPK 150 E+ + + P + D + D+ + + L Sbjct: 330 SLEQGASVRSQEMALRTREGALLDCLVSAAPVSIQDQPCVLAAIQDITERKRSEVELMEA 389 Query: 151 GRIILRDRLW--EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +++D W + Q + G+ +LT RE E L + +G T EIA Sbjct: 390 IETVMQDTSWFSRTVIEKLAQIRAPQGAPQEQGELADLTPREREILGLMCQGHTDAEIAA 449 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +SRNTV N++A++ K RS AI +A + IV Sbjct: 450 SLHLSRNTVRNHVAALYSKLDVHRRSAAIIWARQRGIV 487 >gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 13/182 (7%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITP-PA 124 EQ L +I + P ++ + L D L T + H P + Sbjct: 45 EQALAAIRTEPLPQVVLCDVGLPGMDGITGMSAIKALSPSTHVIMLTVHDDPHKVYGAIC 104 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + Y I + + G + G +A F + D+ Sbjct: 105 AGASGYLLKDASEEAITAAIHEVLNGGAPMN-------GRIARLVLGAFAQQNSTPHNDY 157 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE + L ++ +G EIA +G+S +TVNNY+ I K TR GA+A V Sbjct: 158 GLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNYLRRIYDKLHVHTRGGAVAKTVEEK 217 Query: 245 IV 246 ++ Sbjct: 218 LL 219 >gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143 +R ++ + ++ R E V T + + + ++ G Sbjct: 59 IRMPEMNGIEATREIVARDAEAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADG 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ ++ L+ + + +LT RE E L I++G ++ Sbjct: 119 VRVVASGEALLAPTVTRR--LITEFSKLAEAPRPPALARIGDLTERETEVLVLIAQGLSN 176 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ +T+ +++ I+ K + R+ A +A +V Sbjct: 177 AEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219 >gi|145295913|ref|YP_001138734.1| hypothetical protein cgR_1838 [Corynebacterium glutamicum R] gi|140845833|dbj|BAF54832.1| hypothetical protein [Corynebacterium glutamicum R] Length = 210 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E ++ +++G+++ EI L ++ TV +++ + K +R+ A+A A + I Sbjct: 150 LSAREIEVVSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGI 209 Query: 246 V 246 + Sbjct: 210 I 210 >gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator [uncultured proteobacterium QS1] Length = 223 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 20/191 (10%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLT 134 I+ S++P D + Y V+ F P + + T G + + Sbjct: 33 PIIVSNYPDDWLMLYEARSYHLYDPVINYGMRRFAPFSWCDAQASDTADIGKELFQSAEK 92 Query: 135 FDVARIRIGLM----LLFPKGRIILRDRLWEIG------------LLAAYQANMFKSYDV 178 + ++ ++ LF + R + G L + ++ + V Sbjct: 93 YQISSGFTFVLHDAAELFASLSVCRSGRGSDFGQRVADHSAEIQMALINFHDHILSTQTV 152 Query: 179 HWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 L+ RE+E L W+ +GK E+A+I IS +TV +I+ I K Sbjct: 153 DELFPLPANLLSAREIEILQWVGKGKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQ 212 Query: 236 AIAYAVRNNIV 246 A+ A+R I+ Sbjct: 213 AVYEAIRRGII 223 >gi|15599116|ref|NP_252610.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116051961|ref|YP_789196.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296387556|ref|ZP_06877031.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|9950105|gb|AAG07308.1|AE004809_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587182|gb|ABJ13197.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 906 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 9/137 (6%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172 + G + + +G L L + LR++L Q Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828 Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + L+GRE+ L I++G ++ EI+ L IS +TV ++ I K Sbjct: 829 LLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 889 VERRTQAVARAKHMGLL 905 >gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 205 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 EL+GREVE L +++G ++ IA L +S TV +++ K +R+ A+A A Sbjct: 140 PRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAAR 199 Query: 242 RNNIV 246 ++ Sbjct: 200 ERGLI 204 >gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1019 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G TS +IA L IS TVN ++ SI K +RS A YA+ + + Sbjct: 958 LTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRYALEHKL 1017 Query: 246 V 246 + Sbjct: 1018 L 1018 >gi|283457818|ref|YP_003362412.1| response regulator [Rothia mucilaginosa DY-18] gi|283133827|dbj|BAI64592.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Rothia mucilaginosa DY-18] Length = 275 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 2/143 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-ARIRIGLMLLFPKGRIILRDRLWEIG 163 P +L + + R V P L + Sbjct: 131 PEQLLEAIRTVHRGDAVIAPSATRRLLEHMIPVLDSPAGVPAAPVPVAPPAAGSELPKAT 190 Query: 164 LLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + A A+ D H +L+ RE E L I+ G ++ EI L +S TV +++ Sbjct: 191 FIPAEHASFEPVQDYPHRELIEQLSPREFEVLGLIARGLSNAEITRELVLSEATVKTHVS 250 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 ++ K + R A+ A I Sbjct: 251 HVLAKLGARDRVQAVIMAYEAGI 273 >gi|302868391|ref|YP_003837028.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302571250|gb|ADL47452.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 212 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + + RP + T + ++ Sbjct: 58 MDLQFGKGMGGAEATARITARPEAPRVLIVTTYDSDADTLPAIEAGATG----------Y 107 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P + R G + + LT RE E L +++G ++ Sbjct: 108 LLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALVADGLSN 167 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L ++ TV +++A I K +R+ A+A A ++ Sbjct: 168 HSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210 >gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 221 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + R+ G+ ++ ++ + + + + Sbjct: 96 RAGASGFLLKDASARRLAEGVRVVASGEALLAPTVTRRLITEFSKLSEAPRLMPAAHAAY 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 156 GDLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215 Query: 244 NIV 246 +V Sbjct: 216 RLV 218 >gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171] gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171] Length = 592 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] Length = 215 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ L + GK++ +IA L IS TV +++ RK + K R A A+A Sbjct: 152 NVDLTMREIQVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWA-D 210 Query: 243 NNIV 246 N++ Sbjct: 211 QNLI 214 >gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M13399] gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M04-240196] Length = 218 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 77/222 (34%), Gaps = 18/222 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + ++I +D + + AL G L + + + P ++ + Sbjct: 1 MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56 Query: 91 ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + + + Q + + V + Y + + + Sbjct: 57 DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 + + + + A ++ + LT RE+E L +++ G ++ Sbjct: 117 RKVAEGDNVFSPE------MTAKLVKSLISPQPAQGTQALSSLTPRELEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|260466579|ref|ZP_05812767.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029585|gb|EEW30873.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 525 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +T RE+E L I+ G T+ E A L IS T +++I S+ K TR+ A YAV + + Sbjct: 458 MTPREIEVLRLIAAGLTAKEAARKLDISPKTADHHIQSVYAKIGVTTRAAAALYAVEHGL 517 Query: 246 V 246 V Sbjct: 518 V 518 >gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium leguminosarum] Length = 241 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 27/234 (11%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 I V +R+ + + L + + V + +P V L Sbjct: 13 AFEQIKAAANVDAAIRILQAEYNLDFVTYHLAQTIAS--KIDSPFVRTTYPDAWVSRYLL 70 Query: 93 SEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIG 143 + K ++++ E P PE G+ S+ R Sbjct: 71 NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 130 Query: 144 LMLLFPKG---------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVE 192 L+ L + R + + L+ + Y++H D L+ RE+E Sbjct: 131 LLSLNARIPADEWTELVRRCRNEWIEIAHLI-----HRKAVYELHGENDPVPALSPREIE 185 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I+ Sbjct: 186 CLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|325002947|ref|ZP_08124059.1| NarL family two-component response regulator [Pseudonocardia sp. P1] Length = 236 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 R I E A + M +S LT RE++ L ++ G ++ I L Sbjct: 142 RAIRAVSRGESAFDARSASAMVRSLSGGMPDRERLTDRELDVLRLLARGLSNRAIGAELF 201 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++ ++MRK R+ A+ A + ++ Sbjct: 202 ISETTVKFHVGNLMRKLMVSRRAEAVYAATKLGLL 236 >gi|311067149|ref|YP_003972072.1| DNA-binding response regulator, luxR family protein [Bacillus atrophaeus 1942] gi|310867666|gb|ADP31141.1| DNA-binding response regulator, luxR family protein [Bacillus atrophaeus 1942] Length = 200 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 8/183 (4%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 Q + ++ D ++V ++ + RP L V I+ + + Sbjct: 16 QGIKQLLEHDQDIEVVGTLSNPAVVHEEIICTRPDILITDVRMKSFNGISLTRTIKKAFP 75 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL--------AAYQANMFKSYDVHWGKD 183 L V + + + + + ++ N Y Sbjct: 76 ELKIVVLSGYAYDEYISAAYKAGANAYIKKENSINDLITTIKQSFVGNHIFPYHTINLSG 135 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E+E LT I+E KT+ EI+ L IS+ TV YI+SI++K +R GA+ ++ Sbjct: 136 ERLTHKELEVLTLIAEDKTNMEISTELMISKRTVERYISSIIQKMKANSRVGAVVNGIKQ 195 Query: 244 NIV 246 ++ Sbjct: 196 GLL 198 >gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] Length = 595 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 90/252 (35%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPYVRESLSILLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLP 117 +V Q +D + P ++ + + + + + Q+ + +F T Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMNGIEATKKIKQQWPHIRVLIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 EPPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 217 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 40/74 (54%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F DV+ L+ RE E ++ G T+ EIA L IS TV + A+I+RK + Sbjct: 142 FDGVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLEN 201 Query: 233 RSGAIAYAVRNNIV 246 R+ + YA+ ++++ Sbjct: 202 RADLVRYAIHHHLI 215 >gi|15896845|ref|NP_350194.1| regulatory protein [Clostridium acetobutylicum ATCC 824] gi|15026710|gb|AAK81534.1|AE007857_7 Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325511019|gb|ADZ22655.1| Positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 862 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K+ L+ RE+E L + +G ++ EI IL IS +TV ++ +I K R A+ A Sbjct: 796 KECILSERELEVLEVLCDGNSNKEIGSILNISLSTVKTHMINIYSKLHVSNRLQAVEKAK 855 Query: 242 RNNIV 246 N++ Sbjct: 856 ELNLL 860 >gi|317404517|gb|EFV84926.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 83 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S L+ RE L W + GKTS E A IL IS +TVN ++ + RK + R Sbjct: 7 SAIPRAPAPVRLSPRESASLHWSAIGKTSWETARILDISESTVNFHLRNACRKLQVRGRR 66 Query: 235 GAIAYAVRNNIV 246 A+A A+R ++ Sbjct: 67 AAVATAIRRGLL 78 >gi|291441190|ref|ZP_06580580.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291344085|gb|EFE71041.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 133 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G LT R+ L+ ++EG + +IA++LG S +TV N I IM + + R+ A+ Sbjct: 65 ADGGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAV 124 Query: 238 AYAVRNNIV 246 A+AVR+ +V Sbjct: 125 AHAVRHGLV 133 >gi|312198290|ref|YP_004018351.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229626|gb|ADP82481.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 248 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 2/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ + + V P L F + Sbjct: 73 DVVLMDIRMPVMNGLEATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDT 132 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L+AA+ G LT RE LT Sbjct: 133 QPENLLAAIRTVAAGDALLAPGVTRR--LIAAFVRVPAPPASPLTGLASTLTDRERAVLT 190 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EIA L +S +TV ++ ++ K A + R+ + A + +V Sbjct: 191 QIANGYSNAEIAQALYVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGLV 241 >gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 226 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 5/186 (2%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 L L +V D +A + + L + F + Sbjct: 38 AEAVLLAASHLPDVVLMDIRMPGTDGLAATRRISADPALAAVHVVMLTTFEVDEYVVQSL 97 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHW 180 + + A + + ++ L+ + A + V Sbjct: 98 RAGAAGFLGKGAEPAELLGAIRTAAAGEALLSPAATR--SLITRFLAQAPGTGPAAGVDS 155 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A Sbjct: 156 ARLAALTGREREVLVQVAAGLSNDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIA 215 Query: 241 VRNNIV 246 +V Sbjct: 216 YETGLV 221 >gi|123967708|ref|YP_001008566.1| LuxR family regulatory protein [Prochlorococcus marinus str. AS9601] gi|126695511|ref|YP_001090397.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9301] gi|123197818|gb|ABM69459.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. AS9601] gi|126542554|gb|ABO16796.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9301] Length = 92 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 41/63 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ N Sbjct: 14 MGLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73 Query: 244 NIV 246 + Sbjct: 74 GKI 76 >gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 153 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 35/72 (48%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + D ++ +T RE+E LT ++ G ++ EIA L +S NTV + A K R+ Sbjct: 81 APDTARQQELGITAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRT 140 Query: 235 GAIAYAVRNNIV 246 A+ ++ Sbjct: 141 QAVQRGKELGLL 152 >gi|37522644|ref|NP_926021.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35213645|dbj|BAC91016.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 232 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 17/191 (8%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 V ++F + +D +V VR + E N+ +L V Sbjct: 47 VSREIFTQTPIDFVVFE------VRSVGPFEHQIVQNLRAWSPQLRLLVVLLSANLEEAA 100 Query: 124 AGMDNRYCSLTFD----------VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 +++ SL + + + +G + P + L A + Sbjct: 101 RFIESGADSLWTEQSSVSVLLRAMRKTTLGQRWVDPACEVTSTL-LESNRSPQVAAAPVV 159 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + L+ RE E L I +G ++ +IA L +S NTV N+++ I K + R Sbjct: 160 PGHRAGVTQAVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNR 219 Query: 234 SGAIAYAVRNN 244 + A+ A+ Sbjct: 220 TQAVLKAMGTG 230 >gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 214 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F+TL ++ L V + G + PK +L +L G Sbjct: 92 FYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGG--------- 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + +L+ RE+E L +++G T+ EI+ + +S TV + + I +K KT Sbjct: 143 ----EEEDRSYQQLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKT 198 Query: 233 RSGAIAYAVRNNIV 246 R+ + YA+R+ ++ Sbjct: 199 RADLVDYALRHKLL 212 >gi|116250894|ref|YP_766732.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255542|emb|CAK06619.1| putative GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 159 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +T RE E + W++ GKT+ EI ILGIS TVN +IA+ + + +A A+RN Sbjct: 97 NVTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNG 156 Query: 245 IV 246 I+ Sbjct: 157 II 158 >gi|108803724|ref|YP_643661.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764967|gb|ABG03849.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 253 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D D L+ RE+E L I+ G+T+ EI L +S TV ++ SI RK + R+ A Sbjct: 183 DAPRRLDEPLSERELEVLKHIASGRTNSEIGRHLYVSVGTVKSHTGSIYRKLGVRNRAEA 242 Query: 237 IAYAVRNNIV 246 IA A ++ Sbjct: 243 IARARELKLL 252 >gi|271963222|ref|YP_003337418.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506397|gb|ACZ84675.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L+ ++ G T+ +I L IS TV ++ + K R+ A+ A+ + Sbjct: 145 LSPREAEVLSLVARGLTNAQIGKELFISETTVKTHLLRVFGKLGVSDRTAAVTTALDRGL 204 Query: 246 V 246 + Sbjct: 205 L 205 >gi|226228812|ref|YP_002762918.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226092003|dbj|BAH40448.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 207 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 37/79 (46%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Y + LT RE++ L ++ G ++ I L IS +TV ++++I+ K Sbjct: 127 YVDPEVAGQMAEHSGEEGLTSRELQILHLVAGGLSNKRITSSLAISEDTVKGHVSNILSK 186 Query: 228 TATKTRSGAIAYAVRNNIV 246 R+ A+ A+R ++ Sbjct: 187 LDANDRTHAVTLAIRRGVI 205 >gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 203 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 80/200 (40%), Gaps = 22/200 (11%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL--------Q 103 +++Y+ + + + Q+ + + P ++ + + E D Y V Sbjct: 13 ISDYLELRGYQVTIAENGQKAL--EKLEEEVPELIICDIMMPEMDGYTLVKLIRENAQFG 70 Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 + +F + + + Y FD + + L + Sbjct: 71 WISVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQV-----------ESSLRQTE 119 Query: 164 LLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L Y+ ++ + S + + ELT E++ + +++GK + EI+ I+ +S+ T+ ++I+ Sbjct: 120 RLTRYRKSVIEASQKIRVREGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHIS 179 Query: 223 SIMRKTATKTRSGAIAYAVR 242 +++ KT R+ +A+ Sbjct: 180 NMLGKTGLHNRTQLARWALE 199 >gi|297197400|ref|ZP_06914797.1| LuxR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146707|gb|EDY61643.2| LuxR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 995 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 17/104 (16%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 +LL +I R RL E A+ LT RE + L ++ G++ Sbjct: 901 ATVLLEQADELIRRGRLTEAAPTAS-----------------PLTAREQDVLRLLARGRS 943 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +I L I+ T + ++++I+ K +R+ A+A A R ++ Sbjct: 944 NRQIGEELFITGKTASVHVSNILAKLGAASRTEAVAVAYREGLI 987 >gi|300088236|ref|YP_003758758.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527969|gb|ADJ26437.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 232 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + L + R + + +R G +L D + LL Sbjct: 92 ILGLLEAGASGYLLKSARADEIVGAIRAVRAGESVL---------DSMATRKLLERVVNL 142 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D +L+ RE+E L + G ++ +IA L +S TV ++++I K Sbjct: 143 SKEVPDEKGRG--QLSPREIEILRLAARGLSNRDIAEKLELSMRTVKAHLSNIFNKMRCS 200 Query: 232 TRSGAIAYAVRNNIV 246 +R+ AI R V Sbjct: 201 SRTEAIVKGFREGYV 215 >gi|262203966|ref|YP_003275174.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087313|gb|ACY23281.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 230 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 9/179 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPV---FHTLPENITPPAGMD 127 + S P + + + D E+ + F A Sbjct: 44 ELARSHHPDVAILDIRMPGTDGLTATRTITANPDLAEVKVLILTTFELDEYVFEAVAAGA 103 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFEL 186 + + + + ++ ++ I A + G L Sbjct: 104 SGFLVKHTQPEELVRAVRVIAAGDALLSPSVTRRLISRFADAGRSPTTPVTPGGGPVSAL 163 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E + +++G +++EIA +S TV +++ M K + R+ + +A R + Sbjct: 164 TERETEVVRLVADGLSNEEIAQRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYRLGL 222 >gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] Length = 261 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECL 194 R + ++ G L ++ + LA + Y V D LT RE++ L Sbjct: 139 REMLAVLEAVVAGEDRLPQQILDRPHLARRVLGELQRYVVGEAGLESPDAVLTVRELQVL 198 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +++G ++ EIA L I+ TV N++ SI+RK + R I AVR Sbjct: 199 DCVAQGMSNKEIAEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVRQG 248 >gi|152999817|ref|YP_001365498.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|151364435|gb|ABS07435.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 216 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 13/222 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 D+ +I + + + + S + V W Q S ++++ L+ + Sbjct: 2 DMQNNIISVGLVEDQQLVRQGIASLLAISDNIRVVWQAEDGQDALSQLANNPVDVLLSDI 61 Query: 91 ALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPA----GMDNRYCSLTFDVARIRIGL 144 + D + +++ + T ++ N + + ++ + Sbjct: 62 RMPNLDGIAMLKQIRQSANRLPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLHAI 121 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + G +I L ++ + V ++ L+ RE E L++++ G ++ Sbjct: 122 ETVAKGGYLIEPSVLKQMS-------EPKPAPSVGVTRNELLSEREREILSFMAGGFSNK 174 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA + ++ TV N++++I+ K + R+ A+ ++ ++ Sbjct: 175 EIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216 >gi|111021179|ref|YP_704151.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820709|gb|ABG95993.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 223 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 9/156 (5%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFP 149 S D +++R L V ++ + A + Y D + + + Sbjct: 70 SGVDATRRLVERHPALRVLVVTMHEDDESLVASVRAGARGYLVKGADPGEVERAVRAVAN 129 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 I+ + A + M S V ELT RE E L ++ G + I+ Sbjct: 130 GEVIL------GAAVAARAMSFMAASRRVGPTVFPELTDREREVLDLVARGYDNASISRR 183 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S TV N++++++ K R AI A + Sbjct: 184 LVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 219 >gi|302537227|ref|ZP_07289569.1| two-component system response regulator [Streptomyces sp. C] gi|302446122|gb|EFL17938.1| two-component system response regulator [Streptomyces sp. C] Length = 242 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 1/158 (0%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + E + + + F + + + + + ++ Sbjct: 61 LDGIEACRVISARSACRTVMLTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAA 120 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208 ++ + + D + LT RE E L + G ++ EIA Sbjct: 121 GESLLAPSVARRLIEEYTAVTARPAAPDPLAAERLGVLTARERETLLHLGRGLSNAEIAA 180 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +TV +++ +++ K + R A+ A ++ Sbjct: 181 ALVVSEHTVKSHVGNVLSKLGLRDRIQAVICAYETGLI 218 >gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L+ IS+G ++ EI L IS TV NY ++ +K R A A+ NN Sbjct: 154 NLSKREIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIENN 213 Query: 245 I 245 I Sbjct: 214 I 214 >gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 209 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 18/172 (10%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMDNRYC-- 131 + S P ++ + + ++R ++ VF T + +D Sbjct: 46 IPSASPDLVMMDLDMGTGMHGAEAIKRLRSDGVDVPVLVFTTYDTDADVVRAVDAGAIGY 105 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 L G + GR +L + + M + + LT RE Sbjct: 106 LLKDSTPDEIFGAVRGAVAGRSVLSP-----AVASRLVQQMQRPQEA-------LTARES 153 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 E L+ ++EG T+ E+ L IS TV ++ I K TRS A++ A+R Sbjct: 154 ELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRR 205 >gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676] gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676] Length = 592 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307] gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307] Length = 92 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + ++ T+ EIA+ L IS+ TV+N++++I KT ++ R + +A+ N Sbjct: 16 IHLSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSN 75 Query: 244 NIV 246 + Sbjct: 76 GKI 78 >gi|194366116|ref|YP_002028726.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348920|gb|ACF52043.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 217 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE E L ++ G ++ I + IS TV ++ S+M K R+ A+ A+R Sbjct: 146 EDRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGII 209 >gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 386 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +G + A + ELTGREVE L + G ++ ++A LGIS TV ++ Sbjct: 285 VGAVPADGVSATAVPGPRVAAVAELTGREVEVLDCLVAGMSNKQVARALGISVRTVTVHV 344 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 ++++RKT +R+ A +AVR + Sbjct: 345 SNLLRKTGAASRTEAALWAVRQRL 368 >gi|302552866|ref|ZP_07305208.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470484|gb|EFL33577.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 1/171 (0%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D +A + L L F T + + Sbjct: 50 DIVLMDIRMPGTDGLAATAALCADPELSSTRVLILTTFETEDYVAQALRAGASGFLGKDV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + GL + ++ + + A ++ + +LT RE E + Sbjct: 110 TADTLLAGLRTVASGESLLSPVATRSL-ITRFLLAPAPGTHLAPPERLADLTVREREVMA 168 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EG+++ EIA L +S TV +I M K + R+ + A + +V Sbjct: 169 LAAEGRSNTEIAEDLTLSPLTVRTHIHRAMTKLNARDRAQLVVIAYQTGLV 219 >gi|330988560|gb|EGH86663.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 909 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 17/178 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135 D ++ ++ + + + + E+ P+ + + I R SL Sbjct: 732 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 791 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188 I L + L ++L ++ LL A+ + + G D L+ Sbjct: 792 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTLEPAHGSDC-LSV 850 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 851 RELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 908 >gi|326792257|ref|YP_004310078.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] gi|326543021|gb|ADZ84880.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] Length = 519 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWIS 198 I LL + +L+ E+ LL A ++ V K+ + LT +E E L+ ++ Sbjct: 411 IVASFYLLGREILPLLKKIDQEVYLLVAQFHKENETSKVGIKKEEYLLTPKEREILSLVA 470 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EG+++ EI L ++ TV ++ I+ K K R A++ A + + Sbjct: 471 EGRSNAEIGDQLYLTIGTVKWHMNHILGKLEVKNRIQAVSEARKLGEI 518 >gi|312198094|ref|YP_004018155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229430|gb|ADP82285.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++ AY+ + D LT RE + L ++ G+ + EIA L +S TV ++I + Sbjct: 133 MMRAYRGAVASRRREAARLDL-LTAREHDVLRLLARGQVNAEIAQALRVSPGTVKSHIGA 191 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K + R+ AI +A + IV Sbjct: 192 IFEKLGVRDRAAAIVFAFDHGIV 214 >gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 18/166 (10%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140 +V + + + D + PV T + + Y + Sbjct: 53 VVCDIQMPDMDGIAATKRVVEAGGPPVLILTTYDTQADILAAVEAGAMGYLLKDSPEQAL 112 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 ++ R + + + LLA L+ RE+E L +S G Sbjct: 113 HEAVLNTAAHRRTLAPEV---VDLLAQRVGR----------PQESLSARELEILRALSSG 159 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ E+A L IS TV ++ I +K +TR+ A+ A ++ Sbjct: 160 SSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205 >gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] Length = 213 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 21/212 (9%) Query: 54 EYVGASHFL-LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E G F L E D++ + +P V + D+ V+ R P Sbjct: 2 EQYGFPCFAYLSFAPRGDE--DDALAITTYPSAWVEQYRANRYDRIDPVIARSVATTLPF 59 Query: 113 ------FHTLPENITPPAGMDNRYC-----SLTFDVARIRIGLMLLFPKGRIILRDR--- 158 F L + + ++ + ++ + L + Sbjct: 60 AWSTDQFDALNNRQKWFLEEASEFEIRHGVTIPIHDRQGKVATLTLAACEARSAFEAQIS 119 Query: 159 --LWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISR 214 E+ L+A Y + LT RE CL W + GK++ + A I+ +SR Sbjct: 120 KYRHELHLIAIYLYARLRDVTPTPASPLRPCLTQRERICLQWAARGKSALDTAEIINVSR 179 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV + + RK T A+A + +I+ Sbjct: 180 RTVVFHTQNAKRKLGVATVQQAVAKGLAYDII 211 >gi|119717865|ref|YP_924830.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119538526|gb|ABL83143.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 2/171 (1%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V++ P L+ + + E D + + +E V ++ R + F Sbjct: 42 LVTAGAPDVLLLDVQMPEVDGLAAMTEIEASESSTRVLMLTTFDLDEYVYQAMRAGAAGF 101 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194 + + ++ + D L + + +LT RE + L Sbjct: 102 LLKDMAGEDIVAAVRQVAHGADALLAPAVTRRLVDRYTRERRRPPAPALDQLTPREHDVL 161 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I+ G ++ EIA L I TV ++A ++ K + R A+ A + + Sbjct: 162 RLIAAGLSNAEIAAELFIGETTVKTHVARVLMKLRLRDRVQAVVLAYESGL 212 >gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 21/164 (12%) Query: 89 CMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARIRI 142 + L D + + + + + T ++ M + + + + + Sbjct: 59 DLRLPGTDGFATLAEIRQLNPDARVIILTTSEDDADVRRAMRGGASAYVLKSLPMQELVV 118 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + ++ + + + AA A F D +LT RE++ L I +G+ Sbjct: 119 TIRSVYSGTKHVPHE-------FAARMAERF--------GDEKLTDRELDVLKLIRDGRR 163 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +IA L I+ TVN +I +I +K R+ A+ A+R ++ Sbjct: 164 NKQIASDLKIAEATVNFHIKNISQKLQANDRTHAVMIALRRGLL 207 >gi|298485722|ref|ZP_07003801.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159748|gb|EFI00790.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 909 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 17/178 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135 D ++ ++ + + + + E+ P+ + + I R SL Sbjct: 732 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 791 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188 I L + L ++L ++ LL A+ + + D L+ Sbjct: 792 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTPEPAHDSDC-LSV 850 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 851 RELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKALGLL 908 >gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 209 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE E L+ ++EG T+ E+ L IS TV ++ I K +TRS A++ A+ Sbjct: 144 PQEALTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVETRSAAVSVAL 203 Query: 242 RN 243 R Sbjct: 204 RR 205 >gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 93 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++ G T+ EI+ L IS+ TV+N+I++I+ KT T R + +A+ Sbjct: 12 LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALHWG 70 >gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 496 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189 D++ R M L +++D W L AN+ ++ G + +LT R Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDTSWFSRTLIEKLANVRRANAPGTGAELADLTAR 429 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E E I +G EIA LG++ NTV N++A+I K +R AI +A Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 >gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 215 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 20/198 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110 +Y+ + ++ + +E I+ D P ++ + + E D Y V Sbjct: 27 DYLEFRGYEVMTAEHGKEALD--ILEQDIPDMIICDVMMPEMDGYTLVEKVRDDSRTSCI 84 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + I + Y F+ + + + +++ L Sbjct: 85 PVLFLSAKGQSQDRIKGLNKGADIYMVKPFEPEELVAQVESCLKQTARMMQ--------L 136 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +V + D +LT E + + +++ G + EIA L +S+ T+ +++++++ Sbjct: 137 TVSNPDSAPRINVPY--DVDLTPTERKVVQFVARGMANREIAQQLNVSQRTIESHVSNML 194 Query: 226 RKTATKTRSGAIAYAVRN 243 KT R+ +A+ N Sbjct: 195 GKTGLHNRTELARWAIEN 212 >gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 93 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L ++ G T+ EI+ L IS+ TV+N+I++I+ KT T R + +A+ Sbjct: 12 LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALHWG 70 >gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 215 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 44/88 (50%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + ++ D LT RE E L ++EG ++ EIA L IS TV+ Sbjct: 126 LYAGAVTALIRDYLHRARSGDELPDTILTPREEEVLKLVAEGYSTREIAATLSISAKTVD 185 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + A+I+ K + R YA+R ++ Sbjct: 186 RHRANILAKLGLRDRLALTRYAIRAGLI 213 >gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 15/192 (7%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 E +G S + + + D +V D+ + + + + +R + Sbjct: 27 ETIGVSTYPEAEARVATDGPFD-LVLLDYSMPGMNGLTGFTRMQALPGARRVAIISGTAS 85 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 + E + + T + + + + D + A + + Sbjct: 86 REVAEKVLEAGAA--GFLPKTLSAKSLVNAVRFMAMGEQYAPLDFMR-----AEEETEVN 138 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + +L+ RE+E L +++GK++ EIA L I TV ++ S+ RK R Sbjct: 139 PLAE-------KLSPRELEVLEGLTQGKSNKEIARDLDIREPTVKLHVKSLYRKINASNR 191 Query: 234 SGAIAYAVRNNI 245 + A A + Sbjct: 192 THAAMIAKEAGL 203 >gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 219 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L +++G + EIA L IS TV +I +I+ K +R A+ A R+N Sbjct: 155 PLTDREREVLQALADGLSDKEIAERLYISPATVRTHITAILGKLDANSRLQAVVVAARHN 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 215 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 13/221 (5%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 +P+ DL+ R++ +D + AL L+ +E S P Sbjct: 1 MPSNHDLI-RILTVDDHPLLRKGIAALV-NGEPDLKLVAEASNGEEAIHAY--RSHQPDV 56 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + + + D + + PE + + + + Sbjct: 57 TLMDLQMPGIDG--------LQAIDSIRREFPEARIIILTTYSGDVQVLRALKAGARAYI 108 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L + +L D + + + D LT RE++ L I EG ++ Sbjct: 109 LKGHVHKDLL-DTIRAVHAGQKRIPAEIAAELADHAVDDHLTERELDVLRLIGEGNSNKL 167 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L I TV +++ +I+ K R+ A+ +R I+ Sbjct: 168 IADQLSIGEATVKSHVTNILSKLGASDRAHAVTIGLRRGII 208 >gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 215 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 81/200 (40%), Gaps = 22/200 (11%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTELFC 110 +Y+ + +V + +E + D P ++ + + E D Y V + P + Sbjct: 27 DYLEFRGYDVVTAENGREALEK--LEEDLPDLIICDVMMPEMDGYTLVKHVREDPRTSWI 84 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + + + + Y F+ + + L + L Sbjct: 85 PVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQV-----------ESSLKQATRL 133 Query: 166 AAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +Q N S + ++ +LT E++ + +S+G + +IA ++ +S+ T+ ++++++ Sbjct: 134 IRHQNNAIDSGPKIKARRNVDLTPTELKVVQLVSQGLANRDIADVMNVSQRTIESHVSNM 193 Query: 225 MRKTATKTRSGAIAYAVRNN 244 + KT R+ +A+ + Sbjct: 194 LGKTGLHNRTELARWALESK 213 >gi|296130423|ref|YP_003637673.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022238|gb|ADG75474.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 223 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 25/175 (14%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 P + +R + +L P E + + R L DV R + Sbjct: 62 PAEAIRRLRAVAPSAAVVLLAGP---------DDGEALDRALALGARGF-LAPDVGRAEL 111 Query: 143 GLMLLFPKGRIILRDR-----------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + L E A + D LT RE+ Sbjct: 112 AAVAAHVQASPVSSGPAAPALPHPASPLQETHAARADAGVAPRQVDTGPV----LTKREI 167 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L +S G+++ +I L +S +TV + + RK R+ A+A +R I+ Sbjct: 168 EVLVGMSHGRSNAQIGQELFLSEDTVKTHARRLFRKLGASDRAQAVAIGLRRGII 222 >gi|320334053|ref|YP_004170764.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755342|gb|ADV67099.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%) Query: 87 VRCMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 VR + + + R P + F + + Y DV +R + Sbjct: 68 VRMPGMGGVEATAQLRARSGPPVVLLTTFEEEDAMVGGLQAGASGYLLKDVDVVTLRDTI 127 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + R + + R+ E+ LA + + V + LT RE E L I+ G + Sbjct: 128 VRVARGERYV-QPRVAEV--LADALSRERRGVTVTPER---LTPRETEILALIARGLANK 181 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L ++ TV ++++I+ K R A+ A ++ Sbjct: 182 RIAQALTLTEGTVKVHVSNILGKLGATDRLDAVRVAREAGLL 223 >gi|28871776|ref|NP_794395.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213966768|ref|ZP_03394919.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383276|ref|ZP_07231694.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302062485|ref|ZP_07254026.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302133467|ref|ZP_07259457.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855028|gb|AAO58090.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213928618|gb|EEB62162.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331018915|gb|EGH98971.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 77 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 >gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 206 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 38/79 (48%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Y F S + +T RE E L I+EG T+ EIA L IS TVN + S++ K Sbjct: 128 YSQEAFSSLRIPAPDQLLITRREKEVLLLIAEGLTNAEIAEKLFISIPTVNTHRKSLIEK 187 Query: 228 TATKTRSGAIAYAVRNNIV 246 K + I A++ ++ Sbjct: 188 FNVKNTAMLIGKAIKLGLI 206 >gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 260 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 25/218 (11%) Query: 49 MYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106 + L G + L + + V + +P V L+ K ++++ Sbjct: 46 IRILQAEYGLDFVTYHLAQTIAS--KIDSPFVRTTYPDAWVSRYLLNSYVKVDPIVKQGF 103 Query: 107 ELFCPV-----------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-------F 148 E P + L + G + + R + M Sbjct: 104 ERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNARIPADGWS 163 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 R + + L+ +Q +++ Y H L+ RE+ECL W + GK +I+V Sbjct: 164 ELVRRCRNEWIEIAHLI--HQKAVYELYGEH-DPVPALSPREIECLHWTALGKDYKDISV 220 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ILGIS +T +Y+ + K T S A + AV+ I+ Sbjct: 221 ILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258 >gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 225 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 14/217 (6%) Query: 39 LDCTVSWTMRMYALTEYVGAS---HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95 D ++ + L + A F +V +Q + + P L + L + Sbjct: 12 ADDQPTFRQGLRTLLGFYQAQESFQFHIVGEAASADQAIS-LALEQHPTLLFLDLELPKD 70 Query: 96 DKYYNVLQRPTE-----LFCPVFHTLPENITPP-AGMDNRYCSLTFDVARIRIGLMLLFP 149 D + + + H E + + Y + + + + Sbjct: 71 DGVAALQHLRQQNYTGKILVISAHQEDEWVFRAMRAGADGYVFKSQLAMNLHQAIQTVLK 130 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + D G ++ + ++ V + LT RE + L W+ +G ++ IA Sbjct: 131 NEVFLPPDA--ATGFFRSF--HFYEGRAVQSEQTLHLTAREKQVLHWLVQGASNQAIANH 186 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++ ++ K K+RS AI A++ +V Sbjct: 187 LHITIATVKAHLTAVFEKLEVKSRSQAIVKALKLGLV 223 >gi|271963099|ref|YP_003337295.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270506274|gb|ACZ84552.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 916 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 46/82 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+A A + + + LTGRE E L ++EG + EI L I++ TV+ ++++I Sbjct: 835 LSAALAELGRRARFAPAQPGLLTGREREVLALVAEGLPNREIGERLFIAQKTVSVHVSNI 894 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K +R+ A A A +++++ Sbjct: 895 LGKLGVSSRTQAAAVARKDDLL 916 >gi|124022984|ref|YP_001017291.1| hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT 9303] gi|123963270|gb|ABM78026.1| Hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 8/179 (4%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + + D + +SD DL + + + E+ +F +D Sbjct: 62 AIGKHRPDILFTSD---DLEQGYGIDLVKEAKLA---CAEIKALIFLRRETKEVVDEALD 115 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + F V+ + G L+ ++ + + + D D +LT Sbjct: 116 AGADGVIF-VSSVGSGNGDFIQSLLTTLKGGIYYPADVRELARDTKQPNDA-PVIDCQLT 173 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L I G ++ EI+ L +S TV + +++I+ K + R+ A +A+R+ IV Sbjct: 174 ERELEVLNAIVGGLSNKEISESLFVSSETVKSNVSTIISKLGVRVRTQAAVFAIRHRIV 232 >gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 312 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 61/177 (34%), Gaps = 7/177 (3%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 L L + + IV +D A Y P + P + T Sbjct: 124 LYAEAALSLDTRAALIVGADGTIRWQSPQAARHIAAYTTAHDAPADARQPTTARDTDAPT 183 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--- 178 + + +AR G + I R G + K D Sbjct: 184 QLPALLRTWFVDW--LARGAPGDAVHEFSSGPIRRSASATRGPEPGEWIVILKERDDTVH 241 Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 242 CNALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298 >gi|310659628|ref|YP_003937349.1| transcriptional regulator yhcz [Clostridium sticklandii DSM 519] gi|308826406|emb|CBH22444.1| putative transcriptional regulator YhcZ [Clostridium sticklandii] Length = 222 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 KDF+L T RE E + IS+GK++ EIA L +S TV N+I +I++K + R+ Sbjct: 152 KDFDLLTRREYEIVGLISQGKSNLEIADDLFLSERTVKNHIHNILKKVNLQDRTQIAIAN 211 Query: 241 VRNNIV 246 +R IV Sbjct: 212 LRYRIV 217 >gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 214 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F+TL ++ L V + G + PK +L +L G Sbjct: 92 FYTLRGGAAGYVLKNSTSEELLSAVHAVAGGGSYIHPKMAALLTKQLVGAG--------- 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + +L+ RE+E L +++G T+ EI+ + +S TV + + I +K KT Sbjct: 143 ----EEEDRSYQQLSNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKT 198 Query: 233 RSGAIAYAVRNNIV 246 R+ ++YA+ + ++ Sbjct: 199 RADLVSYALEHKLL 212 >gi|290957183|ref|YP_003488365.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260646709|emb|CBG69806.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 974 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 157 DRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 DRL + L AA A + + + G LT RE + L ++ G+T+ +I L I+ Sbjct: 879 DRLGAVTLRAALDALVRRGRLAETSTAGNVPALTARESDVLRLLALGRTNRQIGDELFIT 938 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T + ++++I+ K +R+ A+A A R ++ Sbjct: 939 GKTASVHVSNILAKLGAASRTEAVAIAYREGLI 971 >gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE + L +S GK +D+IA L IS TV +I I++K + R+ A+A A+R Sbjct: 173 QLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQAVAKAIRYK 232 Query: 245 IV 246 IV Sbjct: 233 IV 234 >gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 38/77 (49%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A F+ K+ +L+ RE E L +S+G T+ EIA L +S NTV ++ Sbjct: 128 SQIARRVVQSFREVPREPVKNEKLSQREEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQ 187 Query: 223 SIMRKTATKTRSGAIAY 239 I K ++R+ A+ Sbjct: 188 HIYEKLHVRSRTEAVVK 204 >gi|160874438|ref|YP_001553754.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859960|gb|ABX48494.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315266674|gb|ADT93527.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 216 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 N + + ++ + + G +I L ++ + V ++ Sbjct: 102 AGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMS-------EPKPAPSVGETRNE 154 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L++++ G ++ EIA + ++ TV N++++I+ K + R+ A+ ++ Sbjct: 155 LLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLA 214 Query: 245 IV 246 ++ Sbjct: 215 LI 216 >gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 5/145 (3%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 R L F + + + G+ + ++ Sbjct: 75 RSRVLVLTTFDLDEYAHAALRAGASGFLLKDAHPEELLAGVRAVAGGDAVVAPAITRR-- 132 Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 LL AY ++ D L TGRE E L ++ G T+ EIA L +S +TV + Sbjct: 133 LLDAYAHHLPARPPGPVDDDPRLAALTGREREILLAVARGWTNGEIAARLVLSESTVKTH 192 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 + ++ K + R A+ A + Sbjct: 193 VGRVLAKIGARDRVQAVILAYDLGL 217 >gi|291299597|ref|YP_003510875.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568817|gb|ADD41782.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 135 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREV 191 +AR + ++ R + + LL A A ++ K+ V L+ RE Sbjct: 19 IARSAVHIVREARASRRLEPLTIDGRMLLTAVTALGIDLDVPKTVSVPASLRRGLSQRET 78 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L I+ GK++ EI L I+ +TV + + RK + R+ A+A A R I+ Sbjct: 79 QVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRTGIL 133 >gi|254421507|ref|ZP_05035225.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196188996|gb|EDX83960.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 101 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 43/70 (61%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + +V +L+ RE+E + ++ G T+ EI+ L IS+ TV+N++++I+ KTA R Sbjct: 15 TDEVIESAQHDLSKRELEIVELVAAGLTNQEISQRLEISKRTVDNHVSNILSKTAAGNRV 74 Query: 235 GAIAYAVRNN 244 + +A+++ Sbjct: 75 ALVRWALQSG 84 >gi|145596336|ref|YP_001160633.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305673|gb|ABP56255.1| response regulator receiver [Salinispora tropica CNB-440] Length = 228 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + + + + L Sbjct: 92 RFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAVRRVAEGDAVFSP-------RL 144 Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + + F + D EL T RE E L ++ G EIA L IS TV +++ Sbjct: 145 AGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 204 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++RK +R +A +V Sbjct: 205 NVLRKLQMSSRYELSRWAADRRLV 228 >gi|260060932|ref|YP_003194012.1| LuxR family transcriptional regulator [Robiginitalea biformata HTCC2501] gi|88785064|gb|EAR16233.1| transcriptional regulator, LuxR family protein [Robiginitalea biformata HTCC2501] Length = 139 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + D + LT RE E L + +G ++ EIA L IS +TV ++++++ K + R Sbjct: 62 READQRKIRQLGLTPRECEVLLPLCKGLSNREIADELHISESTVKTHVSNLLVKLDVRRR 121 Query: 234 SGAIAYAVRNNIV 246 + I A N++ Sbjct: 122 TQVIRKARALNLL 134 >gi|328754436|gb|EGF68052.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] Length = 218 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + Q V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVQQGGT-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 135 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L RE E L I++G T+ +I LG+S TV NY++SI+ K +R+ A Y ++ Sbjct: 75 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 132 >gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 36/64 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+ L +++G ++ EIA L I TV +++ I+ K R+ A+ AV+ Sbjct: 144 NPELSERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVK 203 Query: 243 NNIV 246 IV Sbjct: 204 RGIV 207 >gi|300790264|ref|YP_003770555.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799778|gb|ADJ50153.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 206 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V + L+ REVE L +++G T+ +I L IS TV ++ + K R+ A+ Sbjct: 137 VRNPEPQPLSAREVEVLRLVAKGGTNADIGRALHISEATVKTHLLRVFGKLGVSDRTAAV 196 Query: 238 AYAVRNNIV 246 A+ N++ Sbjct: 197 TTAMARNLL 205 >gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ + + + Sbjct: 96 RAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLVQAPRPSAATQLAY 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L I++G ++ EIA L ++ +T+ +++ ++ K + R+ A +A Sbjct: 156 GELTDRETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEA 215 Query: 244 NIV 246 +V Sbjct: 216 RLV 218 >gi|310287962|ref|YP_003939221.1| response regulator of two-component system [Bifidobacterium bifidum S17] gi|309251899|gb|ADO53647.1| response regulator of two-component system [Bifidobacterium bifidum S17] Length = 277 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 + + Y + T + I + +G + +L +L+A+Q Sbjct: 148 DVGSVIRAGARGYVTKTITGDDL-ISSIKQVHEGYAVFSPKLAGF-VLSAFQGAPMDGAG 205 Query: 178 VHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G+D EL +GRE E + I+ G T E+A L IS TV ++++++RK R+ Sbjct: 206 GERGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRT 265 Query: 235 GAIAYAVRNNIV 246 +A IV Sbjct: 266 ELTRWAADRRIV 277 >gi|300784675|ref|YP_003764966.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794189|gb|ADJ44564.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ +IA L +S TV ++ I K RS A+ A + Sbjct: 151 LTRREAEVLRLIATGLSNQDIAAALVVSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGV 210 Query: 246 V 246 V Sbjct: 211 V 211 >gi|256374666|ref|YP_003098326.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918969|gb|ACU34480.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L + G ++ EI L I TV ++ + K R+ A+ A+R + Sbjct: 147 LSPREVEVLRLVGRGLSNAEIGRQLFIGEATVKTHLLRVFSKLDVSDRTAAVTTAMRLGL 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 89 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L ++ G T+ E++ L IS+ TV+N++++I+ KT T+ R + +A+ Sbjct: 8 PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWAL 67 Query: 242 RNN 244 + Sbjct: 68 QWG 70 >gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9] gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9] Length = 158 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 84 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 143 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 144 IELIKTALRMGV 155 >gi|302522019|ref|ZP_07274361.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430914|gb|EFL02730.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 150 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDE 205 LF R R +A+ ++ L+ RE E L ++ G ++ E Sbjct: 43 LFAAVRATADGRSVLAPAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSNRE 102 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S TV ++ + K R+ A+A I+ Sbjct: 103 IARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 143 >gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 511 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 49/106 (46%) Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + G +G + D + A + V LT RE + L +I++G Sbjct: 405 QDGTPFQADEGTLFALDTMMSRAAKAMSARLAEPATKVGIPSSGVLTPREQQILQFIADG 464 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EI+ L +S TV+ Y+ +I+R+ RS A+A A+R NI+ Sbjct: 465 LDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMRQNII 510 >gi|172039086|ref|YP_001805587.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700540|gb|ACB53521.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 265 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 + + H + LT RE + L I G + +IA L I+ TV ++ +I+ K Sbjct: 187 ETTCIEEDPQHLFEISPLTDREFDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKL 246 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A A+R+ +V Sbjct: 247 CVDDRTQAAVRALRSGLV 264 >gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 224 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 6/139 (4%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 + V + Y T D + + ++ + + + L+ Sbjct: 81 RVIMLTVSEDGEDLGAALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGK--LV 138 Query: 166 AAYQAN----MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 AA+Q+ +L+ RE E L I+ G ++ EIA L I+ TV ++ Sbjct: 139 AAFQSQGAPEPDPGPMPPDDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHV 198 Query: 222 ASIMRKTATKTRSGAIAYA 240 I+RK +R A YA Sbjct: 199 QHILRKLGLTSRVQAAVYA 217 >gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 267 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 154 ILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVIL 210 + +L LLA A+QA + D + LT RE ECL + ++G TS IA L Sbjct: 170 LAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKNIAAAL 229 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TVN ++ S RK + R A+ + ++ Sbjct: 230 NRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 265 >gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 511 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 42/73 (57%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +D + +L+ RE+ L +++G ++ E A +L +S TV +Y++S+M++ + R Sbjct: 438 NQWDEKQPELVQLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVSSLMKRLHARNR 497 Query: 234 SGAIAYAVRNNIV 246 + A A+R ++ Sbjct: 498 TEAAVKAMRLGLI 510 >gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 224 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++G T+ E+A L IS TV + IMR+ +R+ + YA +N + Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209 Query: 246 V 246 V Sbjct: 210 V 210 >gi|207723944|ref|YP_002254342.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2] gi|206589151|emb|CAQ36113.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2] Length = 252 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +D IV+ D+P + + + +++R PV+ + P A +D + + Sbjct: 52 LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPAAEIDRGWLA 108 Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171 L VA L L L ++ L A+ Sbjct: 109 KFIAYDLRNAVADGVYDEGHCIGTYFSFHRLASVNEPFLASVLRDLTPVLHRTLMRAVAD 168 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K++ L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT Sbjct: 169 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228 Query: 232 TRSGAIAYA 240 R G A Sbjct: 229 NRVGVAVLA 237 >gi|307155198|ref|YP_003890582.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306985426|gb|ADN17307.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 248 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE++ L I G + +IA L I+ TV ++ +I+ K R+ A A+ Sbjct: 183 ENDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRAL 242 Query: 242 RNNIV 246 R+ +V Sbjct: 243 RSGLV 247 >gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916] Length = 249 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 17/190 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q++ +V SD L EK + L +F + + Y Sbjct: 62 QQQMPDLVISDVMMPRCDGYGLLEKMRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 121 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSY 176 FD + + + + +L + ++ EI + A+ S Sbjct: 122 IPKPFDPDELVARVRNVVRRQDRLLTEAARFADADVGQMAKQISEIRSMLTGSADAAASP 181 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D T RE L ++EG + EIA L S V Y++ + KT T +R+ Sbjct: 182 DT---PQLSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTEL 238 Query: 237 IAYAVRNNIV 246 + +A+++++V Sbjct: 239 VRFALQHHLV 248 >gi|71737969|ref|YP_274134.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484378|ref|ZP_05638419.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627275|ref|ZP_06460229.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650435|ref|ZP_06481778.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298486449|ref|ZP_07004509.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558522|gb|AAZ37733.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158926|gb|EFH99986.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324828|gb|EFW80900.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329194|gb|EFW85191.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330869470|gb|EGH04179.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330989303|gb|EGH87406.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013208|gb|EGH93264.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPVLNGLGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIAGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L ++ G ++ Sbjct: 119 QRVARGEEALNST------VSARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 235 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 13/180 (7%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYC 131 S++P + + + K + PV T G+ + + Sbjct: 56 SNYPDEWISRYQRDDFYKQDCAAHLSHQSTLPVLWTDELYHEAPHFREAACQHGLRHGWT 115 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFEL 186 D+ + + P G I + + + G + + H ++ Sbjct: 116 QSLHDLQHNESQISVARPAGSIDINELYEKAGSVQWLCHTLHAVLGEHHLNALCPPQPKM 175 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A + Sbjct: 176 SARELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++A + + + D H D +LT RE E ++ +++G +++EI L +S T +++ Sbjct: 143 VIAEFTSRSPRPLDPHPHID-QLTNREHEVVSLVAQGLSNEEIGKRLYVSPATARTHVSH 201 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 M K + + R+ + +A ++ + Sbjct: 202 AMLKLSARDRAQLVVFAFQSGL 223 >gi|21219768|ref|NP_625547.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289773037|ref|ZP_06532415.1| two-component system response regulator [Streptomyces lividans TK24] gi|9368908|emb|CAB99140.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289703236|gb|EFD70665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 4/194 (2%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + L ++ + D +V+ D L+ + + V P L Sbjct: 28 IEVVGEAADGAAVVPLVRQVRPD-VVAMDVRMPLLDGIEATRALLR-TVADPPKILVVTT 85 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + A I + L+ ++ + ++ A Y Sbjct: 86 FENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLA--AEYGDGG 143 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE E L ++ G ++ EIA L + TV +++++++ K + Sbjct: 144 GNRAARAELARARLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARD 203 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ A + V Sbjct: 204 RTQAVITAYESGFV 217 >gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 263 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++ G TS EI L IS TVN +I +I RK +TR+ A+ +A + Sbjct: 203 LSAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQAVRFASLRGL 262 >gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 207 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P ++L R G A + + L+ RE+E L ++ G+++ Sbjct: 103 LLKGAPPDELLLAVRSAAAGESALAPPIASRLLERLRTPQTSLSPREIEVLERVAAGRSN 162 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L I+ TV +++ I K +R+ A++ A I+ Sbjct: 163 GEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGIL 205 >gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W] gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W] Length = 592 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQRALEIGII 591 >gi|330873485|gb|EGH07634.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 77 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 >gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 217 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 13/135 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-KGRIILRDRLWEIGLLAAYQAN 171 F + + + L + + G L+P + ++ + L +I Sbjct: 92 FRAIQAGASGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGI---- 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G L+ RE E L+W+++G + EIA L IS TV ++ +++M K K Sbjct: 148 --------AGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLK 199 Query: 232 TRSGAIAYAVRNNIV 246 TR + +A++ ++ Sbjct: 200 TRPELVKFALKKGLL 214 >gi|296167213|ref|ZP_06849619.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897454|gb|EFG77054.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 238 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 35/207 (16%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--GMDNRYCS 132 D + + WP +LV + + + + A G +RY + Sbjct: 31 DRLEDAQWPMELVFMVEAALALSHREAVHALRPFLARYAGKNLVAGQFVALFGSADRYLA 90 Query: 133 LTFDVARIRIGLMLLFPKGRIILR---------DRLWEIGLLAAYQANMFKSYDVHWGK- 182 + G F + R + L L AA +S Sbjct: 91 RIAALCGDGAGAERHFAAALAMDRRMGSVVHINETLARRALFAASLGQDARSLAEEARAA 150 Query: 183 -----------------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LT REVE L ++EG ++ I L IS NT N Sbjct: 151 AGAIGQARVVDLVDPLLTPGPVGPDGLTEREVEVLRLLAEGLSNRAIGERLFISTNTAAN 210 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I+ KT R+ A YA + ++ Sbjct: 211 HVRNILVKTGAANRTQAAMYAADHELL 237 >gi|290955466|ref|YP_003486648.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260644992|emb|CBG68078.1| putative LuxR-family regulator [Streptomyces scabiei 87.22] Length = 342 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 52/110 (47%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 L LL+P G R + L +A ++ + L+ RE+E LT Sbjct: 216 ADSGGTRLRLLWPVGPDWHRVTVRRHTLGSAVVRRAVLVHETPAPLPYGLSPRELEVLTR 275 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G T+ IA L +S TV+ ++ ++RKT +R+ A A AVR+ ++ Sbjct: 276 AATGMTNQAIAQALFLSPRTVHTHVEHLLRKTGAASRAEATALAVRDGLL 325 >gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 223 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V SD + + + + +F L + + + Y F Sbjct: 47 DVVVSDVVMPEMDGFEFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADDYIIKPF 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + + R +L + L+ ++ D LT E Sbjct: 107 EPLEL---VAKIEAQIERARRTQLEILRLIQQQTQAKAEAAPRPTLADLPLTPAEERVFR 163 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G T+ +I L IS TV ++ +I+ K + + RS + +A + Sbjct: 164 EVIRGLTNKQIGEKLFISPRTVQTHLTNILSKLSLENRSQLVRFAYERGYI 214 >gi|328885463|emb|CCA58702.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 6/160 (3%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLML 146 + E + +R + + T + + + + + + + + Sbjct: 60 LDGLEATRRITADERLEGVRVVILTTFDADDHVYGALRAGASGFLVKDTEPMELLHAVRV 119 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + +I L+A + + D + LT RE E L + G ++DEI Sbjct: 120 VARGDALIAPAVTRR--LIAEFAGRAERRPDPSPRLN-ALTEREREVLGLVGAGLSNDEI 176 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L +S T +++ IM K A + R+ + A + ++ Sbjct: 177 AGRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMI 216 >gi|313109354|ref|ZP_07795317.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881819|gb|EFQ40413.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 875 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 9/137 (6%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172 + G + + +G L L + LR++L Q Sbjct: 738 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 797 Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + L+GRE+ L I++G ++ EI+ L IS +TV ++ I K Sbjct: 798 LLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 857 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 858 VERRTQAVARAKHMGLL 874 >gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 221 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + + F + + Sbjct: 49 DVVLMDIRMPKLDGLEATRRIVADPRASGAHIVVVTTFELDEYVAEAIRAGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + + ++ L A A ++ G D LT RE E L Sbjct: 109 EPAELVRAVRVAAAGDALLSPTVTRR---LLAQVAESTRAVKAVPGLD-HLTDREREVLV 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG ++DEIA L +S +TV +++ M K A + R+ + A + +V Sbjct: 165 TVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLVVAAYESGLV 215 >gi|225022047|ref|ZP_03711239.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii ATCC 33806] gi|224945168|gb|EEG26377.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii ATCC 33806] Length = 212 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EI L +S TV +++ I K ++R+ A+A A + + Sbjct: 152 LTPRELEVLKLVASGSSNREIGRTLLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGV 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|190574796|ref|YP_001972641.1| putative two-component system response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012718|emb|CAQ46347.1| putative two-component system response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 217 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE E L ++ G ++ I + IS TV ++ S+M K R+ A+ A+R Sbjct: 146 EDRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGII 209 >gi|330895505|gb|EGH27816.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981863|gb|EGH79966.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 >gi|229542625|ref|ZP_04431685.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327045|gb|EEN92720.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 218 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 12/167 (7%) Query: 79 SSDWPFDL-VRCMALSEKDKY-----YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 + P D+ + + + E + + F + Y Sbjct: 45 CRNQPVDIALLDVRMPEMNGVEAAKIIAAQTSAKPMILTTFDDDEYIVDALRNGARGYLL 104 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 D +IR + ++ I L +I + + + K T RE E Sbjct: 105 KNNDPEKIRDAIKSVYNGNSIFQDAVLDKIK---SNLSGREPEPKIDLKK---FTERERE 158 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ++ I++G ++ EIA L IS TV NYI SI KT + R+ Y Sbjct: 159 IMSLIAKGFSNKEIAKTLYISEGTVANYITSIFGKTGLEHRTQIAVY 205 >gi|331698378|ref|YP_004334617.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953067|gb|AEA26764.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 212 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 12/147 (8%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 P L F T + + Y + + + ++ Sbjct: 76 RSGSAPRVLVLTTFDTDRDVLPAIEAGATGYLLKDTPRDELLRAVRAAYRGEAVLSPAVA 135 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + V + L+ RE+E L ++ G T+ E A L IS T+ Sbjct: 136 GRLM------------GQVRTPTEEALSSRELEVLQLVAAGATNREAARRLFISEATIKT 183 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ I K + R+ A++ A R ++ Sbjct: 184 HLLHIYAKLEVRDRASAVSAAYRRGLL 210 >gi|302525941|ref|ZP_07278283.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434836|gb|EFL06652.1| two-component system response regulator [Streptomyces sp. AA4] Length = 214 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 10/171 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + +E V P + F + + Sbjct: 50 DVVLMDVRMPAVDGIRATE-HLLSTVEDPPKVIVVTTFENDDYVYDALLAGASGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 I G+ + ++ + + +S DF LT RE + L Sbjct: 109 RPEEIVAGIRTVLAGDSLLFPAAIRGMAA--------RRSPGAAAPLDF-LTERERDVLR 159 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++ +++ K + R+ A+ A + V Sbjct: 160 LMAAGLSNGEIAAELYLGLQTVKTHVGNVLSKLGARDRTQAVIRAYESGFV 210 >gi|294630526|ref|ZP_06709086.1| response regulator, two-component system [Streptomyces sp. e14] gi|292833859|gb|EFF92208.1| response regulator, two-component system [Streptomyces sp. e14] Length = 224 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ + A + + Sbjct: 99 RAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFAKLSGPARPPAAAQAAY 158 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ EI+ L ++ +TV +++ ++ K + R+ A +A Sbjct: 159 GDLTERETEVLVLIAQGLSNGEISERLVVAESTVKTHVSRVLVKLGLRDRTQAAVFAYEA 218 Query: 244 NIV 246 +V Sbjct: 219 RLV 221 >gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 231 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 22/215 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 A+ EY+ S F + +E ++ + P ++ + + + D Y + P Sbjct: 17 AVKEYLQESGFGVRVASNAREGW--ELIQQNTPDLVISDVMMPQVDGYQFLKQLRDDPRF 74 Query: 108 LFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGR-----IILRD 157 PV + +T + Y FD + + L K + Sbjct: 75 ASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLLEKRVTQTTVVGEDS 134 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVIL 210 EI LA A + G +LT RE L +++G + EIA L Sbjct: 135 ENIEIAKLAHEIAKIKDLLSPKIGISQTPPPFAIDLTPREQSVLNLVAQGLMNKEIARKL 194 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S V Y++ + KT T +R+ + +A+ + + Sbjct: 195 ETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 238 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 11/171 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 S+V DW + + + + E + A Y T Sbjct: 56 SVVVLDWMLSGRSGLGFVRDIRIDPPPRVLVFSAITSALAVREAL---AAGAKGYLEKTA 112 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 ++ L + + + A + G LT RE E L Sbjct: 113 PFDEFKMALRSVAAGREYLGASAKRLLQQEAHAA--------MRLGAGPALTNREREVLR 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++EG S EIA L +S TV N+ A+I+++T ++ + + YA R ++ Sbjct: 165 YVAEGLGSKEIADRLALSTRTVENHRANILKRTGLRSVAQLVLYAARLGLI 215 >gi|72162216|ref|YP_289873.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71915948|gb|AAZ55850.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 236 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 51/160 (31%), Gaps = 8/160 (5%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 VR A V+ + F L D+ L V + G Sbjct: 70 VRQWAADSGQTVQVVVVASSVAEGTAFEVLQAGARGLLLRDSSPEELVRAVREVARGNAA 129 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L P+ L DR + LT RE E L + G T+ EI Sbjct: 130 LCPQVTARLLDR--------LAALPAAPQASGPAAEVARLTRREREVLRLLGRGLTNAEI 181 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L + TV ++ ++ K + R A+ Y + +V Sbjct: 182 ARQLVLGETTVKTHVGRVLAKLGLRDRVQAVVYTYEHGLV 221 >gi|256786173|ref|ZP_05524604.1| two component system response regulator [Streptomyces lividans TK24] gi|289770068|ref|ZP_06529446.1| two component system response regulator [Streptomyces lividans TK24] gi|289700267|gb|EFD67696.1| two component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 3/157 (1%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPK 150 L + + + E+ V T ++ + + LT + R I +L Sbjct: 69 LDGIETTRRLTEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNAGRQDITRAILAAG 128 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAV 208 + DR + LLA + + + +LT RE E L I +G ++ IA Sbjct: 129 AGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLSNRGIAE 188 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV +I ++ K + R+ A+ A+ + Sbjct: 189 KLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225 >gi|325961668|ref|YP_004239574.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323467755|gb|ADX71440.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 416 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D+ L RE+E L ++ G+ + IA L IS NTV ++ ++ RK +R Sbjct: 344 PARPLAEAADWNLGERELEVLQLLAAGQRNRSIAAKLHISENTVKFHLRNLYRKIGASSR 403 Query: 234 SGAIAYAVRNNI 245 + A+A A N + Sbjct: 404 TEAMALAHSNGL 415 >gi|298250029|ref|ZP_06973833.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548033|gb|EFH81900.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 855 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 42/88 (47%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L + A D +L+ RE+E L +S+G ++ +IA L IS TV Sbjct: 767 NLPLVEAFTARHRGQPVPQDSPMAHSTDLSQRELEVLHLLSQGLSNKQIAAQLVISPRTV 826 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 + ++ SI K A +R+ YA+ +++ Sbjct: 827 DAHVRSIYNKLALNSRAAVARYALEHHL 854 >gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 219 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 15/168 (8%) Query: 84 FDLVRCMALSEKDKYY--NVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARI 140 DL ++S D L ++ PE+I+ M + Y S DV I Sbjct: 62 ADLRMPGSMSGLDFTAQLRSLSPTVKVLILSMSIAPEDISAAIRMGVSGYLSKNQDVHDI 121 Query: 141 RIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWIS 198 R ++ + R ++ L +S D ++ +LT RE+E L I+ Sbjct: 122 RKAILEIMRDNRPYYSQEILQSFA----------ESVDRQPVEEIRQLTPRELEILKLIA 171 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + T+ EIA L IS TV+ + ++++K K+ G +A+R+ +V Sbjct: 172 QEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSIVGLANFAIRHGLV 219 >gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 221 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 157 DRLWEIGLLAAYQAN-MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISR 214 D L G+ A +S H K+ + LT RE E + + EG ++DEIA L +S Sbjct: 124 DALLSPGVTRRLVAEFATRSRQPHASKELDVLTEREREIVALVGEGLSNDEIAARLVLSP 183 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T +++ M K + R+ + A + +V Sbjct: 184 ATAKTHVSRAMVKLGVRDRAQLVVVAYQTGLV 215 >gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 214 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 41/77 (53%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A ++ G + LT E++ L I+EGKT++EIA I +S T+ ++ I +K Sbjct: 138 AVKWRQRQDDGGAEHNLTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLE 197 Query: 230 TKTRSGAIAYAVRNNIV 246 R A+A A + NI+ Sbjct: 198 VGNRMEAVAVARKKNII 214 >gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 1/148 (0%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 VL L F + + + + + G ++ R Sbjct: 72 ARVLPDCRVLALSTFDLDEYVVAALRAGACGFLPKDVSPEELGAAIRTV-HTGEAVVAPR 130 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L + + + +LT RE E I+ G +D IA L +SR+TV Sbjct: 131 LLTRLISTYVRTPATPAVPRPAPAPADLTPRETEVWRLIATGLDNDAIAAALDLSRSTVK 190 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 N+I ++ K + R+ A+ A + +V Sbjct: 191 NHITALFAKLDVRDRAQAVIAAYESGLV 218 >gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 214 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L RE E L I++G T+ +I LG+S TV NY++SI+ K +R+ A Y ++ Sbjct: 155 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 212 >gi|291298613|ref|YP_003509891.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567833|gb|ADD40798.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + G LT RE++ L +SEGK++ EI L +S +T+ + + RK + R Sbjct: 134 RRVPTQRGGPVGLTEREMQVLRGMSEGKSNAEIGRDLFVSEDTIKTHARRLFRKLGARDR 193 Query: 234 SGAIAYAVRNNIV 246 + A+A R IV Sbjct: 194 AHAVAEGFRGGIV 206 >gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 592 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 9/145 (6%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWE 161 L F + + Y + D + + L++ G +I D R+WE Sbjct: 453 MRVLILSTFQSTERAKEIIRNGADGYLLKSIDSRELAESIRLVYRGGTMINHDLFHRMWE 512 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + G ++ LT RE+E L +S+G IA L +S TV NY Sbjct: 513 DKEETGLVESRLD------GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYA 566 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +++ K K R A+ A ++ Sbjct: 567 SNLYEKLGVKNREEAVQKAKDKGLL 591 >gi|166713294|ref|ZP_02244501.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 826 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 21/199 (10%) Query: 58 ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 A F L RW + ++V + L+ + ++ R P Sbjct: 625 AMGFALARWHRLAGRSSAALVILGQ----IEQACLANDNAWHLARTRARIALVLQQRGEP 680 Query: 118 ENITPPAGMDNRYCSLT----------FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 P + +LT + L P L LL Sbjct: 681 LAALPYLYSALEHVALTQSWQSIVELGLPAKAMLRSLRQHDPHTVGGSTRALTIQALLER 740 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + + D+ + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK Sbjct: 741 LSGDDDPAGDI-------FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRK 793 Query: 228 TATKTRSGAIAYAVRNNIV 246 ++R A+A AV+ ++ Sbjct: 794 LDARSRESALAQAVQRGLL 812 >gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9515] gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9515] Length = 92 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 41/63 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ + Sbjct: 14 MGLSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 73 Query: 244 NIV 246 + Sbjct: 74 GKI 76 >gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184] gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184] Length = 347 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 61/177 (34%), Gaps = 7/177 (3%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 L L + + IV +D A Y P + P + T Sbjct: 159 LYAEAALSLDTRAALIVGADGTIRWQSPQAARHIAAYTTAHDAPADARQPTTARDTDAPT 218 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--- 178 + + +AR G + I R G + K D Sbjct: 219 QLPALLRTWFVDW--LARGAPGDAVHEFSSGPIRRSASATRGPEPGEWIVILKERDDTVH 276 Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 277 CNALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 333 >gi|256395183|ref|YP_003116747.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361409|gb|ACU74906.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + L L F + + + A + GL + Sbjct: 62 GLEATRLITADEKLSGVRILILTTFELDEYVFEAIRAGASGFLLKDTEPADLLRGLRAVA 121 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207 ++ L+A + ++ + + LT RE E L ++ G +++EIA Sbjct: 122 AGEALLAPSVTRR--LIAEFAVRSKRTGPNPAAEQIKALTEREREVLALVAAGLSNEEIA 179 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S T +++ M K + R+ + A + + Sbjct: 180 DRLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYESGL 217 >gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 7/163 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143 VR + + + ++ V T E+ + T + Sbjct: 61 VRMPGGGGIEATRRLAAQSPQVRVIVLTTFDEDAAIDGALRLGAAGFLLKTSPPEMLLDA 120 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + G + + ++A Y A + LT RE E L ++ G + Sbjct: 121 IRRVAAGGGQLDP--MVVPRVIAGYAAA--PRMGERAPELDRLTPRETEVLQLVARGHNN 176 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA +L + TV ++ ++ K + R+ AIA+A + +V Sbjct: 177 AEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIAFAYDSGLV 219 >gi|16331883|ref|NP_442611.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1001802|dbj|BAA10682.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 209 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L +++G ++ +IA L I TV +++ I+ K R+ A+ AV+ Sbjct: 144 NPELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVK 203 Query: 243 NNIV 246 IV Sbjct: 204 RGIV 207 >gi|320322629|gb|EFW78722.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str. B076] Length = 77 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 Query: 245 I 245 + Sbjct: 76 V 76 >gi|317126112|ref|YP_004100224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590200|gb|ADU49497.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 217 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 10/161 (6%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 VR +S + + Q + + + G++ A R Sbjct: 59 VRLPGMSGIEATRRIAQDHPGIKVLIVTAYDDEEFVRRGLEAGAVGFISKAAPGR----E 114 Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L R RL + LLA + D LT RE + L+ + +G + E Sbjct: 115 LATGVRDAAAGRLVLQSQLLARVLRPRGPAND-----GVMLTDRERQVLSLLVDGLHNRE 169 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS TV + S+ K +R+ A+ A+ + I+ Sbjct: 170 IADRLHISSRTVERHCDSLYGKLGAGSRTEAVVKALSHGII 210 >gi|297196575|ref|ZP_06913973.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297153289|gb|EDY67145.2| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|302607736|emb|CBW45649.1| response regulator [Streptomyces pristinaespiralis] Length = 249 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LTGRE + L ++ G ++ EIA L +S +TV ++ +++ K + R YA Sbjct: 185 PPEQLTGRECQILDLVARGLSNTEIAQSLTLSEHTVKTHVQNLLNKLRLRNRVHVAIYAF 244 Query: 242 RNNI 245 + Sbjct: 245 ETGL 248 >gi|296119236|ref|ZP_06837805.1| two-component system response regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967757|gb|EFG81013.1| two-component system response regulator [Corynebacterium ammoniagenes DSM 20306] Length = 212 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ A+ + LT RE+E L ++ G ++ EI L +S TV +++ Sbjct: 131 SALSSMVADRLMTR--VRTPRSSLTPRELEVLQLVAGGSSNREIGQELMLSEATVKSHLV 188 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K ++R+ A+A A ++ Sbjct: 189 HIYDKLGVRSRTSAVAAAREQGVL 212 >gi|256789144|ref|ZP_05527575.1| two-component system response regulator [Streptomyces lividans TK24] Length = 216 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 4/194 (2%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + L ++ + D +V+ D L+ + + V P L Sbjct: 24 IEVVGEAADGAAVVPLVRQVRPD-VVAMDVRMPLLDGIEATRALLR-TVADPPKILVVTT 81 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + A I + L+ ++ + ++ A Y Sbjct: 82 FENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLA--AEYGDGG 139 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT RE E L ++ G ++ EIA L + TV +++++++ K + Sbjct: 140 GNRAARAELARARLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARD 199 Query: 233 RSGAIAYAVRNNIV 246 R+ A+ A + V Sbjct: 200 RTQAVITAYESGFV 213 >gi|315646683|ref|ZP_07899799.1| two-component response regulator yhcZ [Paenibacillus vortex V453] gi|315277889|gb|EFU41212.1| two-component response regulator yhcZ [Paenibacillus vortex V453] Length = 213 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + +R+ + A++ + G D LT RE L I+ G+++ EIAV L I Sbjct: 119 AVNGNRMLHPQVTNQLIAHVATDGEAAKGIDI-LTKREQHVLEQITMGRSNKEIAVELHI 177 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + TV +I I+ K + R+ A YA+RN+ Sbjct: 178 TEKTVKTHITHILGKMEVQDRTQAALYAIRNH 209 >gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18] gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140] gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18] gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1] gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1] gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae PID1] gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae PID1] Length = 218 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 79/223 (35%), Gaps = 20/223 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + ++I +D + + AL G L + + + P ++ + Sbjct: 1 MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56 Query: 91 ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + + + Q + + V + Y + + + Sbjct: 57 DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLAECMRIGARGYLLKNINADFLLESI 116 Query: 145 MLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + + ++ L++ A ++ LT RE+E L +++ G + Sbjct: 117 RKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS-------LTPRELEILGYLAAGHS 169 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 170 NKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 216 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT-SDEIAVILGISRNTVNNYI 221 LA N F + ELT RE E L + +G T + ++A L +S NTV ++ Sbjct: 127 LARKVLNEFARPAAPRPERTAEELTEREREVLELLVQGVTSNKDLADRLFVSENTVKYHL 186 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +I+ K + R+ IAYA+R+ +V Sbjct: 187 RNILNKLHLQNRAQVIAYALRHGLV 211 >gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] Length = 218 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 76/222 (34%), Gaps = 18/222 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + ++I +D + + AL G L + + + P ++ + Sbjct: 1 MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56 Query: 91 ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + + + Q + + V + Y + + + Sbjct: 57 DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 + + + A ++ + LT RE+E L +++ G ++ Sbjct: 117 RKAAEGDNVFSPE------MTAKLVKSLISPQPAQGTQALSSLTPRELEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|300787361|ref|YP_003767652.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796875|gb|ADJ47250.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 227 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 11/209 (5%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRP 105 + L +G + L V + ++ +V P +V + + D P Sbjct: 15 LVGLAILIGDTDDLAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMDGIEATRRATAEP 74 Query: 106 TELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE- 161 V T ++ + + + + + I + ++ +I Sbjct: 75 HPPKVLVLTTFDDDEYVYGALRAGASGFLLKSMALNAILDAIRVVAAGDALIAPSVTRRL 134 Query: 162 IGLLAAYQANMFKSYDVHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTV 217 I A D D L T RE E L + +G ++ EIA L IS T Sbjct: 135 IADFAGTAGPAAPEPDTEPAADSGLLAEITDREREVLALVGQGLSNTEIAERLVISAATA 194 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++A + K + R A +V Sbjct: 195 KTHVARLFAKLEARDRVHLAIIAFEAGLV 223 >gi|315505229|ref|YP_004084116.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411848|gb|ADU09965.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + + RP + T + ++ Sbjct: 58 MDLQFGKGMGGAEATARITARPGAPRVLIVTTYDSDADTLPAIEAGATG----------Y 107 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P + R G + + LT RE E L +++G ++ Sbjct: 108 LLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALVADGLSN 167 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L ++ TV +++A I K +R+ A+A A ++ Sbjct: 168 HSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210 >gi|229015004|ref|ZP_04172081.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|228746271|gb|EEL96197.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 188 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 ++ + S + G + E LT E L IS+ KT+ EI+ L IS+ TV +I+SI+ Sbjct: 105 SHMGYILFSKNQIMGNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSII 164 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK +R GA+ ++ ++ Sbjct: 165 RKLGVDSRVGAVVKGIKKGLI 185 >gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 217 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L+ ++ G T+ EIA L ++ TV +++ +I RK K R A++ A Sbjct: 155 PLSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALSRARELG 214 Query: 245 IV 246 ++ Sbjct: 215 LI 216 >gi|66047505|ref|YP_237346.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|289675883|ref|ZP_06496773.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] gi|302188577|ref|ZP_07265250.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] gi|63258212|gb|AAY39308.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|330938127|gb|EGH41849.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] gi|330952935|gb|EGH53195.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] gi|330969528|gb|EGH69594.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 77 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 >gi|116672252|ref|YP_833185.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612361|gb|ABK05085.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 426 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D++L RE+E L ++ G+ + IA L IS NTV ++ +I RK +R+ AIA A Sbjct: 363 DWKLGDRELEVLQLLAAGQRNRAIAAKLHISENTVKFHLRNIYRKVGATSRTEAIAMAHS 422 Query: 243 NNI 245 N + Sbjct: 423 NGV 425 >gi|307154251|ref|YP_003889635.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984479|gb|ADN16360.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V+ K +LT RE E L ++ +G ++++IA L I+ TV ++ +I K K R+ AI Sbjct: 155 VNAEKKIDLTRREKEVLQYLIKGLSNEQIAQQLYITVATVKAHLTAIFNKLGVKNRTQAI 214 Query: 238 AYAVR 242 A++ Sbjct: 215 VAAMK 219 >gi|114320166|ref|YP_741849.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226560|gb|ABI56359.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 219 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 16/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D +L ++ R G +++ P+ LA+ A Sbjct: 96 VHAALQAGADGYLLKDMEPEALVAELRRAAGGELVISPE--------------LASVLAQ 141 Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + + ELT RE E L I++G+++ IA LG+ TV ++ SI++K Sbjct: 142 VLTRPNHSAADELLAELTSRESEILRHIAKGQSNKMIARDLGLMEGTVKVHVKSILKKLR 201 Query: 230 TKTRSGAIAYAVRNN 244 +R A +AV++ Sbjct: 202 MHSRVEAAVWAVQHG 216 >gi|89092629|ref|ZP_01165582.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89083141|gb|EAR62360.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 217 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 9/172 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLT 134 +V D ++ +EK + + + H E I Y Sbjct: 53 DVVLMDVSMPVMNGFEAAEKFRDEQPNIK---VLILSMHDDREYIVKLIKCGAAGYVLKD 109 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + + +F G + Q ++ + ++ LTGRE + L Sbjct: 110 VSSSELITAIETVFSGGSYFSSGASQAL----FSQFEQEQAVNEKAEQE-ALTGREKDVL 164 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG ++ EIA L IS TV + +I K T +G YA+ NN+V Sbjct: 165 KLVAEGNSNKEIARTLDISVRTVETHRQNIKNKLDIHTAAGLTRYAIDNNLV 216 >gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 214 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 16/217 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRC 89 R+ D + AL E + + L D Q Q +D +V SD + Sbjct: 9 RVALADDQALVRAGLRALLERLEVTVALEAEDGQALLDALQAQPVD-VVLSDVRMPGMDG 67 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 +A+ + P L F + + ++ ++ + Sbjct: 68 IAMLRGLR-ARGDATPV-LLLTTFDEADLLLDAREAGAQGFLLKDAAPGQLHQAILRVAA 125 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 ++ ++ + REV L ++ G ++ EIA Sbjct: 126 GETLLAP--------VSTDPVRARYRFHDDRAPGEGFNPREVAILRLLAGGYSNKEIARS 177 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ TV NY+++I+ K T+ R+ A+ A+ I+ Sbjct: 178 LFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 214 >gi|307326516|ref|ZP_07605711.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887924|gb|EFN18915.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 1086 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + + ++ LT RE + L ++ G+++ +IA L IS T + ++++I+ K Sbjct: 1000 SPVPAAEPADPAEELGLTPRERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNILAKLG 1059 Query: 230 TKTRSGAIAYAVRNNIV 246 R A A A R +V Sbjct: 1060 VSGRGEAAAVAHRLRLV 1076 >gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 266 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185 Y + + + ++ +G I + + A + D Sbjct: 137 ARGYILKSASAHEVAETIRTVYNEGLSIQPE------MTRAIVGEFRRLADTTSSNQGTD 190 Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E+E + +++ G ++ EIA L S TV NY++ I +K + R+ +A+R Sbjct: 191 LLTEKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSIIFQKLHLRDRTQVAIFALRQG 250 Query: 245 IV 246 ++ Sbjct: 251 LL 252 >gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family [cyanobacterium UCYN-A] Length = 233 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 14/187 (7%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E + I+ SD + E+ ++ N LQ +F + I + Y Sbjct: 46 ETTIPDIIISDVMMPEIDGYQFLERIRHNNRLQTIPLIFLTARGMTADRIKGYNAGCDAY 105 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD------- 183 FD + + + +I +++ + A K G+ Sbjct: 106 LPKPFDPEELEAIVKSFLERRKI--NEKIGNNSVKLEEIAQEIKGLKEQLGQQKTHLTVI 163 Query: 184 -----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +LT RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 164 PPSIKIDLTPREKSVLDLVAEGLMNKEIAARLNTSVRNVEKYVSRLFGKTETNSRTELVR 223 Query: 239 YAVRNNI 245 +A+++ + Sbjct: 224 FALKHGL 230 >gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 5/174 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 50 DVVLMDIRMPGTDGLAATRMITEDPRLADVRVVMLTTFEVDEYVVDSLRAGASGFLGKGA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVE 192 + + + + ++ + GL+A + A + LTGRE E Sbjct: 110 EPGELLSAIRIAAAGEALLSP--VATKGLIARFLAQGVPGSGDAAYDASRLDALTGRERE 167 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G +DEIA L +S TV ++ M K + R+ + A +V Sbjct: 168 VLVQVAGGHPNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGLV 221 >gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 13/220 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R+ ++ + + Y + + ++ + P L+ + Sbjct: 1 MSIRIALVEDDQPFARTLQR---YFALTSAVTCDVVFPNAEEALRKIPKLAPELLLVDIN 57 Query: 92 LSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLML 146 L + + ++QR + C + E+ + C L + + + Sbjct: 58 LPKMNGIEFVGQIVQRCPGMLCLMLTMYEESPLIFEALKAGACGYLLKRTPPQEIVTAIE 117 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 G + ++ ++ +Q + L GREVE L +++G EI Sbjct: 118 EAKAGGSPMTPQIAR-HVVNFFQKQPVPP--PAAPVEAGLAGREVEVLGLLAQGYLYKEI 174 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS +TVN++I I K ++RS A+A ++ Sbjct: 175 GESLGISTHTVNSHIRRIYEKLHVRSRSQAVAKY--RGLI 212 >gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] Length = 234 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE E L +SEG + +IA L +SR+T+ +I +I RK A +R+ A A + Sbjct: 170 NAGLSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQAAQAARQ 229 Query: 243 NNIV 246 ++ Sbjct: 230 RGLL 233 >gi|294816579|ref|ZP_06775221.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|294321394|gb|EFG03529.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ ++ + L F + + + L ++ Sbjct: 59 GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 118 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDE 205 ++ L L+++Y + G LT RE E I+ G + Sbjct: 119 EAVVAPRLLTR--LISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIAAGLDNTG 176 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA + +S +TV N+I ++ K + R+ A+ A +V Sbjct: 177 IAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 217 >gi|256827097|ref|YP_003151056.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583240|gb|ACU94374.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 215 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F+TL ++ L + ++ G + P L +L Sbjct: 92 FYTLRGGAAGYVLKNSSTEVLLGAIRKVATGETYIEPNMAQALSGKL------------H 139 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +S EL+ RE E + +++G T+ E A L IS TV + + I K + Sbjct: 140 GQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKIYAKLGVNS 199 Query: 233 RSGAIAYAVRNNIV 246 R+ + A++ +++ Sbjct: 200 RAELVHLALKYHLL 213 >gi|18413618|dbj|BAB84309.1| putative nitrate/nitrite response regulator [Halomonas halodenitrificans] Length = 221 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 12/134 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + L D + + + +G M++ +L + L N Sbjct: 98 VVNALQSGADGYLLKDMDPDEMVRQLRQASLGRMVISESLTALLAEALRS-------HRN 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D+H LT RE E L ++ G ++ IA L I+ TV ++ +++K + Sbjct: 151 QPAAPDIH-----SLTQREREILRELAAGLSNKMIARKLEITEGTVKVHVKHLLKKLNLR 205 Query: 232 TRSGAIAYAVRNNI 245 +R A +AV+ I Sbjct: 206 SRVEAAVWAVQEGI 219 >gi|158315190|ref|YP_001507698.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110595|gb|ABW12792.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + G D L + + G LL P +L R AA Sbjct: 93 VAQALRVGASGFLGKDVGTDELLSAIRTVAGGDALLSPAATRVLISRFLATPEPAA---- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + V+ LT RE E + ++EG ++ EIA L IS T ++ M K + Sbjct: 149 ---TATVNPVALAALTAREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNAR 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A ++ ++ Sbjct: 206 DRAQLVVIAYQSGLL 220 >gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 208 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + +++GK++ EIA + I+ TV +++ ++RK TR+ A+A+A + + Sbjct: 133 LTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLRKLGVGTRAQAVAFAYESGL 192 Query: 246 V 246 + Sbjct: 193 I 193 >gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 6/158 (3%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPEN--ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 L D + + PE + + + + + Sbjct: 60 LPRLDGVAATRRLAAHRVLLLTSGSPEERLVEALRAGARGFLLKHASAGDLVAAVRAVAA 119 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAV 208 ++ L A M ELT RE++ L ++ G ++ EIA Sbjct: 120 GDMLLSPAATR---ALFERIAPMLHLDAAPPPSALGELTERELDVLRLLARGLSNGEIAA 176 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S TV +++ ++RK + R A+ +A + +V Sbjct: 177 QLFVSGATVKTHVSHLLRKLCLRDRVQAVVFAYDSGLV 214 >gi|256394854|ref|YP_003116418.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361080|gb|ACU74577.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 232 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D + LT RE E L I+ G+++ EIA L +S TV +++ I+ K + R Sbjct: 150 PRADERLERLERLTDREREVLVEIARGQSNAEIAETLHLSEATVKTHVSRILPKLELRDR 209 Query: 234 SGAIAYAVRNNIV 246 A+ +A +V Sbjct: 210 VQAVVFAYEIGLV 222 >gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 219 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 79/200 (39%), Gaps = 19/200 (9%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110 +Y+ + + + +E +++ P ++ + + E D Y V Q + Sbjct: 30 DYLEFQGYEVTTAENGKEAL--EVLTKQIPDMIICDVMMPEMDGYSLIEKVRQDARTSWV 87 Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + + + Y F+ + + + + + + Sbjct: 88 PVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQASRL----MRHKANI 143 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +N + + ELT E + + +++G ++ ++A L +S+ T+ +++++++ Sbjct: 144 SLDDSNRIQVPS-----NVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNML 198 Query: 226 RKTATKTRSGAIAYAVRNNI 245 KT R+ +A+ N+I Sbjct: 199 NKTNLHNRTELARWAIENSI 218 >gi|152965947|ref|YP_001361731.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360464|gb|ABS03467.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 230 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG ++ EIA L +S TV ++ +I+ K + R A+ A + Sbjct: 160 LTPRELDVLRCLAEGSSNAEIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIAAYEFGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|21232702|ref|NP_638619.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767223|ref|YP_241985.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21114513|gb|AAM42543.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572555|gb|AAY47965.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 921 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 839 SGDDDPANDL-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSRE 897 Query: 235 GAIAYAVRNNIV 246 GA+A A++ ++ Sbjct: 898 GALAQALQRGLL 909 >gi|330888767|gb|EGH21428.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 74 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 13 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 72 Query: 245 I 245 + Sbjct: 73 V 73 >gi|269794179|ref|YP_003313634.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096364|gb|ACZ20800.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 236 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 5/151 (3%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 + P + F + + + + + + +I Sbjct: 84 ARGDEAPRIIVLTTFDLDEYALEAIRSGASGFLLKDAPPEEMLAAIRTVHSGDAVIAPST 143 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRN 215 LL + + V G+ LT RE E L ++ G+ + EIA L ++ Sbjct: 144 TRR--LLDRLVTTLPEEQLVDSGQASAVDSLTEREREVLVLMARGRANQEIASDLFVAEA 201 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ ++ I+ K + R A+ A +V Sbjct: 202 TIKTHVGRILSKLGARDRVQAVVTAYETGLV 232 >gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41] gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 377 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K V + LT RE L ++EG + +I +L +S +TV +Y++S+M K K R Sbjct: 304 KGEKVEKCTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNR 363 Query: 234 SGAIAYAVRNNIV 246 + +A A R ++ Sbjct: 364 TQVVASAFRLGLL 376 >gi|319794441|ref|YP_004156081.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596904|gb|ADU37970.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 504 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 44/106 (41%) Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 +G M + + + + A A + + L+ RE+E L IS+G Sbjct: 399 ALGCMKEDVEAGRFDQHVVDALLACAMSHAPSRSAAPQQQRGEQALSERELEVLRCISKG 458 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + + E+A LGIS TV ++ + K TR+ A A ++ Sbjct: 459 ENTKEVARALGISPRTVRTHVERVFLKLECSTRAAATLKAATRGLI 504 >gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1] gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1] Length = 226 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H L +T + NR + +L + ++ ++ L L+A + N Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ + + RE E L W +EGKTS EIA+IL IS NTVN + ++ +K Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKIKCT 225 >gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140 +V + + D + PV T + + Y + Sbjct: 53 VVCDIQMPGMDGIAATKRVVEAGGPPVLILTTYDTQADILAAVEAGAMGYLLKDSPEQAL 112 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 ++ R + + + LLA L+ RE+E L +S G Sbjct: 113 HEAVLNTAAHRRTLAPEV---VDLLAQRVGR----------PQESLSTRELEILRALSTG 159 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ E+A L IS TV ++ I +K +TR+ A+ A ++ Sbjct: 160 SSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205 >gi|227505685|ref|ZP_03935734.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197653|gb|EEI77701.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 212 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EI L +S TV +++ I K ++R+ A+A A + Sbjct: 152 LTPRELEVLKLVAAGASNREIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|254522250|ref|ZP_05134305.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219719841|gb|EED38366.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 217 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + L+ RE E L ++ G ++ I + IS TV ++ S+M K R+ A+ A+R Sbjct: 146 EDRLSPRETEVLRHVASGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALR 205 Query: 243 NNIV 246 I+ Sbjct: 206 RGII 209 >gi|302337778|ref|YP_003802984.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634963|gb|ADK80390.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 264 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + KD+ L+ RE E + +GKT+ EI L IS TV +IASI RKT + R+ A Sbjct: 200 EFAKDYALSPRETEITALLLQGKTNAEICQSLFISLATVKTHIASIFRKTGARNRTELSA 259 Query: 239 YAVRNN 244 RN Sbjct: 260 L-FRNG 264 >gi|167616524|ref|ZP_02385155.1| autoinducer-binding transcriptional regulator, LuxR family, putative [Burkholderia thailandensis Bt4] Length = 213 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 112 VFHTLPEN-ITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------- 162 VF ++ + + RY +L+ +G + R I+++ L +I Sbjct: 68 VFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELDDIEPEMIWL 127 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA + G+ ++ E + L W +EGKT EI+ IL +S +N +I Sbjct: 128 AHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMSVRNINFHIQ 187 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K ++ A A ++ Sbjct: 188 NVVGKLGATNKTHAAVKATLVGLI 211 >gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 74 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|305680308|ref|ZP_07403116.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659839|gb|EFM49338.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 212 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ EI L +S TV +++ I K ++R+ A+A A + + Sbjct: 152 LTPRELEVLKLVASGSSNREIGRALLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGV 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 244 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 21/201 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 + +G + + + + Q+ +I + P + + ++ + F V Sbjct: 54 QVIGFTTYDDAWKEHYTSQRFQNIDPTLHLPMRSIAPIDWQRLREHRD--------FDRV 105 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-----FPKGRIILRDRLWEIGLLAA 167 F + + ++ S+ +GL+ + + ++ + E+ A Sbjct: 106 FEHARD-----FKIKDQGLSVPIHGPYGEVGLISVTRDCSLGTWEKLRKNVITELQTAAV 160 Query: 168 YQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + D + + +L+ RE E L W + GK+ +I VIL IS TV ++ S Sbjct: 161 SLHDTVMQSDTLGYALRRPQLSSRECEVLQWTAAGKSQIDIGVILTISSRTVEVHLRSAR 220 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K + + A+ A+ + Sbjct: 221 SKLSALSTPQAVGRAIGMGFI 241 >gi|188990306|ref|YP_001902316.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732066|emb|CAP50258.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 921 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 839 SGDDDPANDL-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSRE 897 Query: 235 GAIAYAVRNNIV 246 GA+A A++ ++ Sbjct: 898 GALAQALQRGLL 909 >gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134] gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134] Length = 595 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 350 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V + +D + P ++ + + D Q P L F Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 466 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 522 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + Sbjct: 523 ETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKE 582 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 583 EAVQKALEIGII 594 >gi|119714227|ref|YP_919369.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119526136|gb|ABL79506.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 574 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L+ + EG ++ EIA L IS T +++++I+ K ++R+ A AYA+ + Sbjct: 504 LSRREQEVLSLVVEGLSNAEIAERLFISVKTAGHHVSNILTKLGVRSRTEATAYALLH 561 >gi|294628886|ref|ZP_06707446.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292832219|gb|EFF90568.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length = 222 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 45/137 (32%), Gaps = 2/137 (1%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V + T L V R G + P ++ L A Sbjct: 85 HADVLEAVKSGATGYLLKSASTQELLDAVRRTAAGDPVFTPGLAGLVLGEYRR--LAAEP 142 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 D LT RE E L +++G + +IA L IS TV N++ + + K Sbjct: 143 APAAGAGTDGPEPGAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 202 Query: 229 ATKTRSGAIAYAVRNNI 245 R + YA+ + Sbjct: 203 QLHNRVELVRYAIERGL 219 >gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 12/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D+ + V R G LL P R+ E L A QA Sbjct: 90 VYAALRAGAIGFLVKDDEPERMVDAVRRAAAGEPLLAPSVLR----RVVERALAAEEQAA 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE+E L + G ++ EIA L + TV ++++ M K + Sbjct: 146 VQVPAG--------LTDRELEVLALVGVGLSNAEIADALHVGVTTVKTHVSTAMDKLGLR 197 Query: 232 TRSGAIAYAVRNNIV 246 R+ A A R +V Sbjct: 198 NRTQAAVVAHRIGLV 212 >gi|221633346|ref|YP_002522571.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221155795|gb|ACM04922.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 246 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 77 IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRY 130 +V+ P ++ + + D ++Q+ + + + + Y Sbjct: 68 MVAELQPDVVLMDINMPGMDGIRATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSY 127 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + + G I D L+ YQ + K+ + +L+ RE Sbjct: 128 LVKNSKPEELLRAIHVAAEGGATIDPD--LAPILMREYQRLLTKAP----TRGQDLSDRE 181 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L +++G + +IA L ++ +TV N ++++ +K + R+ A+ YA+ + +V Sbjct: 182 LTMLRLLAQGYNNRQIADALNLAESTVKNNLSALFQKLGVRDRTQAVIYAISHGLV 237 >gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 216 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 +R RL + + A A+ + G+ L+ RE E L I +G + EIA LG+S Sbjct: 124 IRARLNLVARVKAISAH--PAAMELEGEFIHLSRRETEVLKEIGDGHKNGEIARKLGLSE 181 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV++Y+ +I +K + +R+ A A+R +V Sbjct: 182 HTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 213 >gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 1/157 (0%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 L D + L + ++ +G +R + + P Sbjct: 47 YDLVLLDYKMPGMNGLQGLKQALAIGGARHVALISGEASREIAEEALELGAAGFVPKTLP 106 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208 ++ R +G A A M + +V + LT RE+E L ++EGK++ EIA Sbjct: 107 AKSLVNAVRFMAMGEQYAPIAFMTAAEEVEEHPLAKSLTKREMEVLKGLTEGKSNKEIAR 166 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L I+ T+ ++ ++ RK R+ A A I Sbjct: 167 DLEITEPTIKLHVKTLYRKLDVNNRTQAAIVARDAGI 203 >gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 595 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 350 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V Q +D + P ++ + + D Q P L F Sbjct: 410 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 466 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I Q + Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQIETPQ 526 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 527 SKATA----YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 583 EAVQKALEIGII 594 >gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 246 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L W S GKT EIA I+GIS TV ++ +++ K AI V + Sbjct: 181 FTAREHEVLYWASMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELEL 240 Query: 246 V 246 + Sbjct: 241 I 241 >gi|322432955|ref|YP_004210204.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9] gi|321165182|gb|ADW70886.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 210 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 D L+ RE+E L ++ G ++ IA L +S +TV +I +I+ K R+ A+ Sbjct: 139 AEHAGDDILSAREIEVLRHVAAGNSNKIIASNLTLSEHTVKGHIKNILSKLGASDRTHAV 198 Query: 238 AYAVRNNIV 246 A+R + Sbjct: 199 MIALRRGFL 207 >gi|238061615|ref|ZP_04606324.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237883426|gb|EEP72254.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L ++ D L + + G LL P+ L+ + A Sbjct: 104 VFEALQAGVSGFLLKDAGPAELLHAIRVVAAGDALLAPRITR---------RLIGQFTAQ 154 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE E LT + G +++EI L +S T +++ M K + Sbjct: 155 RT-ATQAAESRLAVLTQREREVLTLVGRGLSNNEIGAELFLSPATARTHVSHAMAKLGAR 213 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 214 DRAQLVVIAYQTGLV 228 >gi|115265604|dbj|BAF32866.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330966735|gb|EGH66995.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 77 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 >gi|260914572|ref|ZP_05921040.1| nitrate/nitrite response regulator protein NarL [Pasteurella dagmatis ATCC 43325] gi|260631363|gb|EEX49546.1| nitrate/nitrite response regulator protein NarL [Pasteurella dagmatis ATCC 43325] Length = 209 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 L++ + + ++ D F +V + + +P + L Sbjct: 8 LIIDDHPLMRRGIKQLIELDESFSVVGDAGNGSEGINLALQTQPDLIILDLNMKGLSGLD 67 Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164 T A G+D R LT ++ I ++ +L+D + L Sbjct: 68 TLKALRSEGIDARILILTVSDSKNDIFTLIDAGADGYLLKDTEPDTLLGQIKRISQGEVI 127 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ N + LT RE++ L I+ G ++ +IA L IS TV +I ++ Sbjct: 128 LSDSIKNALIERQSATDPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK +R A + Sbjct: 188 LRKLNVHSRVAATVLYFEHK 207 >gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] Length = 241 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 4/100 (4%) Query: 151 GRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 +DR GLL M + H ++ L+ RE E L W S GKT EI Sbjct: 136 NEKATKDRHDLQGLLIDTHEMMLHLYRDESERHKSEENMLSSRENEILYWSSTGKTYPEI 195 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A +L I+ +TV ++ I++K AI+ A+ NI+ Sbjct: 196 AHMLNITVSTVKFHMGKIVKKMGVNNAKHAISLAIELNII 235 >gi|271962388|ref|YP_003336584.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505563|gb|ACZ83841.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +LA A + + L+ RE+E L ++ G T+ E AV L I+ TV +++ Sbjct: 127 SVLAPSVAARLMNR-MRAPAPQLLSPRELEVLELVAAGNTNREAAVRLFITEATVKSHLL 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I K R+ A+ A ++ Sbjct: 186 NIYTKLGVNDRAAAVTEAFNRGLL 209 >gi|169630793|ref|YP_001704442.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169242760|emb|CAM63788.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 215 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 2/136 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I Y + T + + + + + RL + Sbjct: 76 PVFLALSVSDAAEDVIAVIRAGARGYVTKTISGSELADAVRRVAGGDAVFSP-RLAGF-V 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + LT RE+E L ++ G T EIA L IS TV + +++ Sbjct: 134 LDSFTGRSNAPEPALDPELDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNV 193 Query: 225 MRKTATKTRSGAIAYA 240 +RKT R+ +A Sbjct: 194 LRKTQQSNRNALTRWA 209 >gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] Length = 215 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 2/137 (1%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 R L F A + + + + + I Sbjct: 76 RSRALMLTTFDLDAYVDDALAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRI- 134 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + + + + D + +LT REV+ L I +G ++ EIA L +S +TV +++ Sbjct: 135 -IEGHLSGRRRPSDQDLARLRDLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSR 193 Query: 224 IMRKTATKTRSGAIAYA 240 ++ KT ++R+ A A Sbjct: 194 VLTKTGCQSRAQAAVLA 210 >gi|224283771|ref|ZP_03647093.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] Length = 277 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 + + Y + T + I + +G + +L +L+A+Q Sbjct: 148 DVGSVIRAGARGYVTKTITGDDL-ISSIKQVHEGYAVFSPKLAGF-VLSAFQGAPMDGAG 205 Query: 178 VHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G+D EL +GRE E + I+ G T E+A L IS TV ++++++RK R+ Sbjct: 206 GARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRT 265 Query: 235 GAIAYAVRNNIV 246 +A IV Sbjct: 266 ELTRWAADRRIV 277 >gi|94496793|ref|ZP_01303368.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] gi|94423806|gb|EAT08832.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] Length = 256 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 71/235 (30%), Gaps = 20/235 (8%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 DLL + + M L +G HF L+ D ++ D + D+P +V Sbjct: 13 DDLLRALRKVASREELAALMTCLASEIGFRHFALIHHDPLAGERPDRVDIRDYPAAIVDR 72 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR-------- 141 + + + V++ + + I D SL F Sbjct: 73 LFDQGQLRRDPVIRGCLFSDGAFLWSDLDKIITFTRQDRH--SLEFGAGHGLNEGITVPH 130 Query: 142 ------IGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREV 191 IG L R + A A G L R Sbjct: 131 VLLGECIGSCTFAGATDPQLASRYLGFAQITGIFAFQAARRMLLASPLIGPAPRLHPRPR 190 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +C+ G ++ EIA LG++ TV+ Y+ R R+ + AV + Sbjct: 191 DCVVLAGRGFSNKEIARELGLTPRTVDGYLTEARRLFDAHDRAELVVSAVLAGEI 245 >gi|332703486|ref|ZP_08423574.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332553635|gb|EGJ50679.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 213 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 10/181 (5%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITP 122 F + + S P L C++ + + QR P H L + Sbjct: 36 FSQADTAQVADSRRPLLLWDCLSNNLPKFWTMCSQRAENGNGPCLALINAPHELTLELQA 95 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + + G+ + R+ L + Sbjct: 96 LRNGADGLFRECDPPDLLIKGIASILHGDLWYSREVLSRF----VRDERKVRPQATQSAD 151 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE E L I+ G +++EIA L IS +TV + +I K R A +AV+ Sbjct: 152 TSTLTPREREVLERIAAGASNEEIAKNLFISPSTVKTHAYNIYAKIRVPNRIQAALWAVQ 211 Query: 243 N 243 N Sbjct: 212 N 212 >gi|325003494|ref|ZP_08124606.1| two component system response regulator [Pseudonocardia sp. P1] Length = 222 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + L + F G + + Sbjct: 49 DVVLMDIRMPGTDGLTATREITGDPGLSGTRVIVLTTFTDDSYVFEAIRGGASGFLVKDS 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + ++ ++ L+A + A V D LT RE E L Sbjct: 109 EPADLIHAIRIVHGGEALLAPAVTR--TLIAEFAARSRGGPAVSPRLD-ALTEREREVLA 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++DEIA L +S T +++ M K + R+ + A + +V Sbjct: 166 EVAAGLSNDEIAGRLHMSPTTAKTHVSRTMTKLGARDRAQLVVVAYESGLV 216 >gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 22/215 (10%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 A+ EY+ S F + +E ++ + P ++ + + + D Y + P Sbjct: 17 AVKEYLQESGFGVRVASNAREGW--ELIQQNTPDLVISDIMMPQVDGYQFLKQLRDDPRL 74 Query: 108 LFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLFPKG-----RIILRD 157 PV + +T + Y S FD + + L K Sbjct: 75 ASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLLEKRISQTTVAGEDS 134 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVIL 210 EI LA A + G +LT RE L +++G + EIA L Sbjct: 135 ENMEIAKLAHEIAKIKDLLTPRTGISQTPPPFTIDLTPREQSVLNLVAQGLMNKEIARKL 194 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S V Y++ + KT T +R+ + +A+ + + Sbjct: 195 ETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229 >gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E L I+ G + E+A L IS TV ++ + K R+ A+ A+ ++ Sbjct: 150 SPRELEVLRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209 >gi|291302714|ref|YP_003513992.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571934|gb|ADD44899.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 218 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 9/184 (4%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 L +E+K D ++ D LV + ++ L + F + Sbjct: 38 AAVALAREEKPDVLLM-DIQMPLVDGLTATKLIVGDPDLDGVRVVMLTTFAADAKLFAAL 96 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + Y + + G+ ++ ++ + F D Sbjct: 97 RAGASGYLVKDAEPHELLHGVRVVARGDGLLSAS-------VTRRVIESFADTTATDAPD 149 Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L ++ G ++ EIA L +S T ++ M K + R+ + +A Sbjct: 150 IDGLTDRETEVLGLVARGLSNAEIAGRLSMSPATAKTHVNRTMTKLGARDRAQLVIFAYE 209 Query: 243 NNIV 246 +V Sbjct: 210 TGLV 213 >gi|167578384|ref|ZP_02371258.1| autoinducer-binding transcriptional regulator, LuxR family, putative [Burkholderia thailandensis TXDOH] gi|257143030|ref|ZP_05591292.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 215 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 112 VFHTLPEN-ITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------- 162 VF ++ + + RY +L+ +G + R I+++ L +I Sbjct: 70 VFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELDDIEPEMIWL 129 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA + G+ ++ E + L W +EGKT EI+ IL +S +N +I Sbjct: 130 AHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMSVRNINFHIQ 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K ++ A A ++ Sbjct: 190 NVVGKLGATNKTHAAVKATLVGLI 213 >gi|126661670|ref|ZP_01732679.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617044|gb|EAZ87904.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 201 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE++ L I G + +IA L I+ TV ++ +I+ K R+ A A+R+ Sbjct: 138 YPLTERELDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRS 197 Query: 244 NIV 246 +V Sbjct: 198 GLV 200 >gi|57234766|ref|YP_181176.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225214|gb|AAW40271.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L S+G ++ EIA L +S TV ++++I K R+ AI R Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLELSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 245 IV 246 V Sbjct: 214 YV 215 >gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 290 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 70/210 (33%), Gaps = 18/210 (8%) Query: 45 WTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + + + + ++ D Q +K IV D ++ + Sbjct: 83 FRDGLRHVLDQFEGPPTIIEACDFPQAIAAVQSEKDIDIVLLDLTMP-----GMAWTEGL 137 Query: 99 YNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTF--DVARIRIGLMLLFPKGRIIL 155 + + P+ + V + ++ +R+ + + L G + L Sbjct: 138 AKLKELLPSTVPLIVLSASDDRRHVLQAVNMGAAGFIPKTSSSRVMLSALKLVLSGGVYL 197 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 L E G LT R+ E L + +GK++ EIA +L ++ Sbjct: 198 PPALLEQGGPGGDDGAPVAGESAIAS----LTPRQREVLALLGQGKSNKEIARVLELAEG 253 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV ++ +I++ R+ A+ A + Sbjct: 254 TVKLHVTAILKALNVNNRTRAVVAASHLGL 283 >gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] Length = 123 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 49 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 108 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 109 IELIKTALRMGV 120 >gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli 1357] Length = 147 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 73 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 132 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 133 IELIKTALRMGV 144 >gi|302036525|ref|YP_003796847.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604589|emb|CBK40921.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 68/218 (31%), Gaps = 15/218 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTE----YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 L R++ D L + VG + E K D IV D ++ Sbjct: 3 LPRVLLADDHTLVLEGFRRLLDDQCELVGTVGDGRALLEAIPELKPD-IVILDISMPVLN 61 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + K + + H P + L V L Sbjct: 62 GIDAARVLKVKFPQVKVVFIT---MHADPAYVRAAFEAGASAYLLKRCVGE------ELG 112 Query: 149 PKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 R + + L+ +M + D ELT R+ E L ++EG T +IA Sbjct: 113 QAIRAVRSGNFYVTPLVTKDVVESMLRGIDGGAPSGPELTTRQREVLQLLAEGHTVKDIA 172 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV + IM + T + YA+ + Sbjct: 173 GTLNISPRTVEFHKGQIMEQLNLHTTVELVKYALAQGL 210 >gi|296118498|ref|ZP_06837076.1| DNA-binding response regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] gi|295968397|gb|EFG81644.1| DNA-binding response regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] Length = 206 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140 +V + + D + PV T + I Y + Sbjct: 54 VVCDIQMPGMDGISATRRVRDAGGPPVLILTTYDTEADIIAAVEAGALGYLLKDSPEQVL 113 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 ++ R + + GLLA +S L+ RE+E L ++ G Sbjct: 114 HDAVVATVEGRRTLSPEV---AGLLAERVGRPQQS----------LSAREIEILQALATG 160 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ ++A + IS TV ++ I +K R+ A+ A ++ Sbjct: 161 ASNKQLAKQMFISEATVKTHLIHIYQKLGVDNRTAAVTVARERKLI 206 >gi|255526737|ref|ZP_05393639.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296187028|ref|ZP_06855428.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|255509572|gb|EET85910.1| two component transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|296048466|gb|EFG87900.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 213 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M + + K +LT RE E L I +G ++ +I+ L IS NTV + I K K Sbjct: 132 MVRENSIEPEKIEQLTAREKEILCEIGKGMSNQQISKKLCISENTVKKHNNHIFDKLNMK 191 Query: 232 TRSGAIAYAVRNNIV 246 R+ YA + ++ Sbjct: 192 DRTQLALYANKCGML 206 >gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 249 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 2/164 (1%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + R + S P + F + + + + + Sbjct: 76 EATRRITGSGTAGAGPDAGAPKVVVLTTFDLDEYVVAAIGAGASGFLLKDAPPEELLAAV 135 Query: 145 MLLFPKGRIILRDRLWEIGLLAA--YQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + +I + +A G +LT RE+E L ++ G + Sbjct: 136 RTVHSGDAVIAASSTRRLLQHVGPMLRAGAASPAAAAQGVPADLTPRELEVLECMAHGLS 195 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA +S TV ++ ++ KT ++ R A+ A +V Sbjct: 196 NGEIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVLAYAAGLV 239 >gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074] gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074] gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074] Length = 229 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D L + + G ++ P L DR + L A A Sbjct: 93 FTGLRAGASGFMLKDVPPSELLTAIRSVHSGDAVVAPSTTRRLLDR-FAPMLPDASAAPR 151 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LTGRE E + +++G ++ EIA L +S TV ++ I+ K + Sbjct: 152 HAGLD-------RLTGREREVMVLVAQGLSNGEIAAHLVLSEATVKTHVGRILTKLGLRD 204 Query: 233 RSGAIAYAVRNNIV 246 R + A +V Sbjct: 205 RVQVVVLAYETGLV 218 >gi|291303040|ref|YP_003514318.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572260|gb|ADD45225.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 6/161 (3%) Query: 89 CMALSEKDKYYNVLQRPTE-LFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGL 144 M + + L++ C + T E+ +D + D + IG+ Sbjct: 56 RMPVLDGLGALAELRQAAPATRCVMLTTFDEDEFIARALDAGAAGFLLKASDPRELIIGV 115 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + +A + + K ELT RE E L I+ G ++ Sbjct: 116 RAVADGAAYLSPRVAGRV--IAEFDTDRLTRGTGAQRKVAELTPRENEVLGLIASGLSNQ 173 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EI L ++ TV ++++I+++ + R A + + Sbjct: 174 EIGRRLHLTEGTVKAHVSAILQRLGVRNRVEAAIIGYQAGL 214 >gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 241 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 21/231 (9%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 I V + L G + L + + V + +P V Sbjct: 13 AFEQIKAAANVDAA--IRILQAEYGLDFVTYHLAQTIAA--KIDSPFVRTTYPDAWVSRY 68 Query: 91 ALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIR 141 L+ K ++++ E P PE G+ S+ R Sbjct: 69 LLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128 Query: 142 IGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195 L+ L + L + A+ + Y++H D L+ RE+ECL Sbjct: 129 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLH 188 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I+ Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437] Length = 92 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I+++M+K K RS A+ VR Sbjct: 30 LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVRLG 88 >gi|207742850|ref|YP_002259242.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609] gi|206594244|emb|CAQ61171.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609] Length = 252 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +D IV+ D+P + + + +++R PV+ + P A +D + + Sbjct: 52 LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPVAEIDRGWLA 108 Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171 L VA L L L ++ L A+ Sbjct: 109 KFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTPVLHRTLMRAVAD 168 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K++ L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT Sbjct: 169 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228 Query: 232 TRSGAIAYA 240 R G A Sbjct: 229 NRVGVAVLA 237 >gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G + EIA LGI+ TV + IM+K + AYA+R + Sbjct: 148 LTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|322383770|ref|ZP_08057521.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151982|gb|EFX44925.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 213 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L I++GKT+ +IA L IS TV ++++++ K R+ YA R Sbjct: 146 EEGLTIREKEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHR 205 Query: 243 NN 244 Sbjct: 206 KG 207 >gi|302335061|ref|YP_003800268.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Olsenella uli DSM 7084] gi|301318901|gb|ADK67388.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Olsenella uli DSM 7084] Length = 787 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEI 206 K + D+L + A QA+ + ++ G LT E + L I + K++ EI Sbjct: 688 HAKEMGVDEDQLARLVRGARAQASHYPNFMSSPSGPAEPLTKTEGQVLRLICQDKSNAEI 747 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +LGI TV +++ I+ K R+ A + A R ++V Sbjct: 748 GELLGIKLPTVKTHVSHILTKLGVSRRAQAASEARRLHLV 787 >gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 210 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 27/183 (14%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 +R + + I+ S WP V + D+Y L Sbjct: 55 IRMPVMDGLEAARIMHSRWPERKVLILTTFNDDEYA-------------LEALRNGARGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 D L + G + + +AA D Sbjct: 102 MLKDADAVELIRAIRSCLSGGLSIEEH--------------VAAKVMPRLMKKTNDAAVD 147 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +T RE+ + + EG ++ EI+ L +S T+ N+I++I+ K + + R+ YA+R+ Sbjct: 148 PAITPRELAIMKLVGEGLSNKEISEELSLSVGTIKNHISAILDKLSLRDRTQLAIYAIRH 207 Query: 244 NIV 246 N+V Sbjct: 208 NVV 210 >gi|226357105|ref|YP_002786845.1| response regulator NarL [Deinococcus deserti VCD115] Length = 216 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 15/219 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + + +L E G + V + ++ + P ++ + + Sbjct: 3 MIRVLLVDDHALFRQGLRSLLESEG----MRVIGEASNGREAIRYAADTHPDVILMDIQM 58 Query: 93 SEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 E D + ++ Y D A + + Sbjct: 59 PELDGVKATQSILEIDPNARVIMITMYRQDRYVFEAVKAGARGYILKDADAATLIDAITR 118 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + ++ D +L ++ K ++ K +L RE L +++G ++ +I Sbjct: 119 VAAGEALLDAD--MAQNVLDDFRD---KREELPSEKHADLNERETMILKLLAQGFSNQDI 173 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A+ L IS TV N ++ I K R+ A YA+R I Sbjct: 174 ALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 212 >gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 31/236 (13%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 I V + L G + L + + V + +P V Sbjct: 13 AFEQIKAAANVDAA--IRILQTEYGLDFVTYHLAQTIAA--KIDSPFVRTTYPDAWVSRY 68 Query: 91 ALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIR 141 L+ K ++++ E P PE G+ S+ R Sbjct: 69 LLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128 Query: 142 IGLMLLFPKG---------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGRE 190 L+ L + R + + L+ + Y++H D L+ RE Sbjct: 129 RALLSLNARIPAEEWTELVRRCRNEWIEIAHLI-----HRKAVYELHGENDPVPSLSPRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I+ Sbjct: 184 IECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239 >gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 272 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 LL +D + + +++ L++ V+ + + + Sbjct: 93 LLASFDATMPRVILLNMATRDSATLLKQALALGPHTRVVVIGIAEDDESAIVACAEAGVA 152 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 L + ++ +G L PK IL L + LAA + Sbjct: 153 GYHSRSESLDELLELIHKVAVGETLCSPKVSAIL---LRRLSTLAAQREPAPT------- 202 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE+E L + G+T+ EIA L I+ +TV +++ +++ K TR+ A A Sbjct: 203 -ELVLTRREIEILRMLEAGRTNREIAEQLCIAVHTVKSHVHNLLAKLGVSTRAQAAA 258 >gi|282860391|ref|ZP_06269457.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564127|gb|EFB69663.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 12/195 (6%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHT 115 + V + + +V+ P + + + D + R L F Sbjct: 27 MTVVAEAADGTEAVHLVARHQPDVALMDIRMPGLDGIEATRRILTSGARTRVLIVTTFDL 86 Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + + + G+ + ++ LL AY ++ + Sbjct: 87 DEYAHDGLRAGASGFLVKDAMPEELLSGIRAVASGDAVVAPSLTRR--LLDAYAHHLPST 144 Query: 176 YDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ LT RE E LT I +G T+ EIA L ++ +TV ++ I+ KT ++ Sbjct: 145 PGARPERENPRIASLTEREREILTVIGQGWTNTEIATRLHLAESTVKTHVTRILAKTGSR 204 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 205 DRVQAVILAYDTRLV 219 >gi|255523270|ref|ZP_05390241.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|296186229|ref|ZP_06854634.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|255513138|gb|EET89407.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|296049497|gb|EFG88926.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 882 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWG 181 + F+ IRI L+ +I+L+ + + + Y + Y Sbjct: 760 REALIIGFENGFIRIFLLKQVKANKILLK-TIKSMKFNKDYYKMGEYLNKILSLYSTEEN 818 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ++ RE E L I G + EIA L I+ +T ++I +I K + R A+A A Sbjct: 819 SEI-ISKREKEVLMLIESGAKNSEIAKALFITESTTKSHILNIFSKLGVRNRIQAVAKAK 877 Query: 242 RNNIV 246 I+ Sbjct: 878 EIGII 882 >gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19] gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332] gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae PID332] gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae PID332] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184 Y + + + + + ++ L++ A ++ Sbjct: 99 ARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS------ 152 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N Sbjct: 153 -LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211 Query: 245 I 245 + Sbjct: 212 V 212 >gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271] gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271] Length = 592 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + E T + D L R++ +D + L + + Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V Q +D + P ++ + + D + Q+ + +F T Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQAVESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|296138645|ref|YP_003645888.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026779|gb|ADG77549.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 223 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 8/155 (5%) Query: 97 KYYNVLQRPTELFCPVFHTL------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + R PVF L + I Y + T + + + Sbjct: 69 GVTDGAPRARLEKTPVFLALSVSDAAEDVIATIRAGARGYVTKTISGPELADAVRRVA-D 127 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G + RL +L ++ + LT RE+E L ++ G T EIA L Sbjct: 128 GDAVFSPRLAGF-VLDSFTGRSPVPEPALDPELDSLTPRELEVLRLLARGYTYREIAEDL 186 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS TV + ++++RKT R+ +A ++ Sbjct: 187 FISVKTVETHASNVLRKTQQSNRNALTRWAHTRHL 221 >gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 216 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 77/191 (40%), Gaps = 7/191 (3%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 +Y+ + ++ + +E +++ D P ++ + + E D Y +++ + P Sbjct: 27 DYLEFRGYDVITAENGREALD--VLAQDIPDMIICDVMMPEMDGYA-LVEYVRQ--DPSM 81 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA--N 171 + +P G N A + + + + L + L Sbjct: 82 NWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQVESSLRQASRLTTRPQTPG 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ + ELT E++ + +++ G + EIA L +S+ T+ +++++++ KT Sbjct: 142 GEPPSNIQVPANVELTPTELKVVQFVARGLANREIAQELNVSQRTIESHVSNMLGKTGLH 201 Query: 232 TRSGAIAYAVR 242 R+ +A+ Sbjct: 202 NRTELARWAIE 212 >gi|126348096|emb|CAJ89817.1| putative LuxR-family regulator [Streptomyces ambofaciens ATCC 23877] Length = 987 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G+++ +I L IS T + ++++I+ K +R+ A+A A R + Sbjct: 919 LTAREQDVLRLLALGRSNRQIGEELFISAKTASVHVSNILAKLDAASRTEAVAVAYRQGL 978 Query: 246 V 246 V Sbjct: 979 V 979 >gi|126173479|ref|YP_001049628.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|125996684|gb|ABN60759.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 216 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 N + + ++ + + G +I L ++ + V ++ Sbjct: 102 AGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMS-------EPKPAPSVGVTRNE 154 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L++++ G ++ EIA + ++ TV N++++I+ K + R+ A+ ++ Sbjct: 155 LLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLA 214 Query: 245 IV 246 ++ Sbjct: 215 LI 216 >gi|297194274|ref|ZP_06911672.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152196|gb|EDY64473.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 256 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 7/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V+ D L+ + + V P L F + + Sbjct: 90 DVVAMDVRMPLMDGIEATRAVLR-TVDDPPKILVVTTFENDEYVYEALRAGADGFLLKRA 148 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + L+ ++ + + A S + LT RE L Sbjct: 149 RPAEIVHAVRLVAEGESLLFPAAVRSLA------AEYGNSAARTAMERAALTEREAAVLR 202 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++++++ K + R+ A+ A + V Sbjct: 203 LMARGLSNSEIAAQLFVGTETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 253 >gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 211 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKG-----RIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 DN++ L P+ RI+ + W +A +F+ Sbjct: 86 DNQHILEAIQAGASGYLLKRDLPEHLISAIRIVHQGGSWMSAGVARRALELFRHQLAPAA 145 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +LT RE E L ++ G ++ EIA L +S TV +I I RK + R+ A++ + Sbjct: 146 ALQQLTPREQEVLHLLARGLSNAEIAERLYLSIETVRTHIRHIYRKLQARNRAEAVSRLL 205 Query: 242 RN 243 +N Sbjct: 206 QN 207 >gi|254390921|ref|ZP_05006131.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704618|gb|EDY50430.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 242 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ ++ + L F + + + L ++ Sbjct: 78 GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 137 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDE 205 ++ L L+++Y + G LT RE E I+ G + Sbjct: 138 EAVVAPRLLTR--LISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIAAGLDNTG 195 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA + +S +TV N+I ++ K + R+ A+ A +V Sbjct: 196 IAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 236 >gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 254 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 8/123 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183 ++ + RL E +L A+QA + + + Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQVLPFLLLAHAFQARAQELLEPQERRCHH 189 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE ECL + ++G TS IA L S TVN ++ S RK + R A+ + Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 Query: 244 NIV 246 ++ Sbjct: 250 RLL 252 >gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1] gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1] gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1] gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1] Length = 217 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D + L+ RE E ++ G ++ EIA L IS TV + A+IMRK A R Sbjct: 143 NGVDTNLTGYNGLSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNR 202 Query: 234 SGAIAYAVRNNIV 246 + I YA+ ++++ Sbjct: 203 ADLIRYAIHHHLI 215 >gi|326445496|ref|ZP_08220230.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 ++ ++ + L F + + + L ++ Sbjct: 80 GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 139 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDE 205 ++ L L+++Y + G LT RE E I+ G + Sbjct: 140 EAVVAPRLLTR--LISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIAAGLDNTG 197 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA + +S +TV N+I ++ K + R+ A+ A +V Sbjct: 198 IAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 238 >gi|294102849|ref|YP_003554707.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617829|gb|ADE57983.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 223 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + + + L + I G M L P ++ Y Sbjct: 95 VAEMLKAGASGFLLKECAFQELAEAIRSIIKGKMYLSPSISKC---------VIEEYVGF 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + H + L+ RE E L I+EGK + +IA L IS TV + +IMRK Sbjct: 146 LSGDEKEHTDSESALSHREKEVLQLIAEGKANRDIAKTLHISVKTVETHKYNIMRKINLH 205 Query: 232 TRSGAIAYAVRNNI 245 + + YA+++ + Sbjct: 206 SVAELTKYAIKSGL 219 >gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 5/158 (3%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + + L + + + + + A + + Sbjct: 62 GIEAARRIAARPELASVRVVMLTNYGFDEYVYNALRAGASGFLVKDIEPAELLHAVRQAA 121 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + D L+ + + V D LT RE E + ++G ++EIA Sbjct: 122 RGDAPLSPDVARR--LMRDFASRPLSPNPVD---DERLTNREREVVVLAAQGLNNEEIAE 176 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS T +I+ M K A + R+ + YA + ++ Sbjct: 177 RLVISPTTAKTHISRAMIKLACRDRTQLVVYAYESGLI 214 >gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 206 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT ++ CLTW++ GKTS EIA ILG S TV+ +I M+ +R+ A YA I Sbjct: 144 LTPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQALNMCSRTAAAVYASVQGI 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|322831866|ref|YP_004211893.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321167067|gb|ADW72766.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 216 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R ++R + A+Y N ++ ++ LT RE E L + G ++ EI Sbjct: 117 LVEGIRSVIRGECYFSQGFASYLINQSGAFRHLHSEETGLTHREKEILNKLRVGASNTEI 176 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 A +L IS NTV ++ ++ RK + K R+ A ++A Sbjct: 177 ARLLFISENTVKTHLYNLFRKISVKNRTQAASWA 210 >gi|284031285|ref|YP_003381216.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810578|gb|ADB32417.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 11/222 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ D + A+ +G+ + V + + +V P V + + Sbjct: 1 MIRVLLADDEAMVRAGVRAI---LGSDDSIEVVAEAGDGAEAVELVQKHRPDVAVLDIRM 57 Query: 93 SEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLML 146 D + + T E+ + + + + D + GL Sbjct: 58 PRMDGLAAGAEIRRTAPGTAVVILTTFSEDAYIAKALGDGASGFLLKSGDPRELIAGLKA 117 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSD 204 + + + + KD L+ RE+E L+ + G ++ Sbjct: 118 VAEGAAYLSPKVAQRVIAELGAGTGGGRMARAAAAKDQVDVLSPRELEVLSLVGAGLSNA 177 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L + TV Y+++++ + K R A A +V Sbjct: 178 EIAARLFLVEGTVKAYVSAVLTRLGVKNRVQAAIIAYEAGLV 219 >gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 3/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F + + + + ++ +I + + Sbjct: 88 PAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALVAAIRVVARGEGLIAPELTRRVIA 147 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A + V +LT RE E L ++ G ++ EIA L + TV +++ + Sbjct: 148 AFARPGGEPTTTAVALS---DLTPREHEVLVLVASGASNAEIAANLRLGEATVKTHVSRV 204 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A + +V Sbjct: 205 LAKLGLRDRVQAVVFAYEHGVV 226 >gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090] gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02] gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11] gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679] gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035] gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2] gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional response regulator [Neisseria gonorrhoeae FA 1090] gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184 Y + + + + + ++ L++ A ++ Sbjct: 99 ARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS------ 152 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N Sbjct: 153 -LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211 Query: 245 I 245 + Sbjct: 212 V 212 >gi|167766736|ref|ZP_02438789.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1] gi|167711490|gb|EDS22069.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1] Length = 222 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 6/173 (3%) Query: 78 VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V D P ++ + + E D + ++ ++ + T ++ + + Y Sbjct: 43 VRKDKPDVILMDVRMPEMDGVQCTQIIKEQYPDVKIIILTTFDDDEYVYNALKHGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + + G +I + ++ + A +H E+T E Sbjct: 103 LKGISMDELEKAINTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEITDAEW 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E + + G ++ EI+ L +S TV NY+++I+ K + R+ + V++ Sbjct: 163 EIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQSG 215 >gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240149] gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis NZ-05/33] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis OX99.30304] gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M0579] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 76/222 (34%), Gaps = 18/222 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + ++I +D + + AL G L + + + P ++ + Sbjct: 1 MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56 Query: 91 ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + + + Q + + V + Y + + + Sbjct: 57 DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 + + + A ++ + LT RE+E L +++ G ++ Sbjct: 117 RKAAEGDNVFSPE------MTAKLVKSLISPQSTQGTQALSSLTPRELEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 11/168 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARI 140 DL + ++ EL V ++ Y + Sbjct: 53 MDLSMPHGKDGLTATSELKEKLPELAILVLTMHDDDEYLFRAIHAGAAGYVLKNAPHEEL 112 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWIS 198 + + + L+ Y M + S DV+ L+ RE E L + Sbjct: 113 LTAIRSVARGDAYLYPTATKR--LMNDYVERMKRGESGDVYHS----LSDREKEVLGLTA 166 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G + EIA L IS TV + +++M K KTR I YA++ ++ Sbjct: 167 KGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGLL 214 >gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 230 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V +R+G LL P L +R AA Sbjct: 97 VYAALTAGASGFLLKDVSPEHLVAAVRLVRMGDALLAPAITRRLVERFASRDSGAARLHR 156 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE+E L ++++G ++ E+A +S TV ++A I+ K + Sbjct: 157 DLSA----------LTPRELEVLEFLAQGLSNAELAARFQLSEATVKTHVARILAKLQVR 206 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A ++ Sbjct: 207 DRAQAVIVAYETGLI 221 >gi|167031823|ref|YP_001667054.1| ATP-dependent transcription regulator LuxR [Pseudomonas putida GB-1] gi|166858311|gb|ABY96718.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida GB-1] Length = 905 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 125 GMDNRYCSLTFDVARIRIGLML--LFPKGRIILRDRLWEIGLL---AAYQANMFKSYDVH 179 G + + A + L K L ++L A ++ Sbjct: 778 GQAAQLLPGLLEAAHGGVLQPFQPLLEKHPQWLHEQLQPAAACPVQAELLKHLPPVPTAS 837 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G L+GRE+ L I++G ++ +I+ L IS +TV + + I K + R+ A+A Sbjct: 838 TGTGEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAK 897 Query: 240 AVRNNIV 246 A ++ Sbjct: 898 AKTLGLL 904 >gi|29833613|ref|NP_828247.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610737|dbj|BAC74782.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 6/195 (3%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + L ++ + D +V+ D L+ + + + RP ++ Sbjct: 28 IEVVGEAADGAAVIPLVRQLRPD-VVAMDVRMPLMDGIEATR--AVLRTVDRPPKILVVT 84 Query: 113 -FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 F + + A I + L+ ++ + ++ Sbjct: 85 TFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEHGDGGG 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + V + LT RE E L ++ G ++ EIA L + TV +++++++ K + Sbjct: 145 NRAARAVM--ERAALTDREGEVLRLMARGLSNAEIAGQLVVGTETVKSHVSAVLAKLGAR 202 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A + V Sbjct: 203 DRTQAVIAAYESGFV 217 >gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58] gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis MC58] gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis CU385] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|320333040|ref|YP_004169751.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754329|gb|ADV66086.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 220 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 6/157 (3%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 M ++ + ++ P + F + + + Y D+ + + + Sbjct: 69 MDGAQATRAFHARGGPPVILMTTFDEPEDMVAGLQAGASGYLFKNVDIHELHDAMRRVRA 128 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 R+I + A + + V LT RE L +S G ++ +IA Sbjct: 129 GERVIHP----RVAQAVADAEAVDAAPGVTL--QAPLTAREQAILGALSAGASNKQIAQR 182 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS TV +++++ K R+ A+ A + ++ Sbjct: 183 LGISDGTVKTHLSNLFFKLGAANRTEAVYRARQLRLL 219 >gi|315271311|gb|ACO47091.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 214 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 15/219 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ +D + + +L E G + V + ++ + P ++ + + Sbjct: 1 MIRVLLVDDHALFRQGLRSLLESEG----MRVIGEASNGREAIRYAADTHPDVILMDIQM 56 Query: 93 SEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 E D + ++ Y D A + + Sbjct: 57 PELDGVKATQSILEIDPNARVIMITMYRQDRYVFEAVKAGARGYILKDADAATLIDAITR 116 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + ++ D +L ++ K ++ K +L RE L +++G ++ +I Sbjct: 117 VAAGEALLDAD--MAQNVLDDFRD---KREELPSEKHADLNERETMILKLLAQGFSNQDI 171 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A+ L IS TV N ++ I K R+ A YA+R I Sbjct: 172 ALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] Length = 296 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE + L W + GKT+ E A+ILG+S TVN+++ +K ++ A+A A+ + Sbjct: 234 LSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMAANKTHAVAIAINRGV 293 Query: 246 V 246 + Sbjct: 294 I 294 >gi|238749708|ref|ZP_04611213.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380] gi|238712363|gb|EEQ04576.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380] Length = 244 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 82/237 (34%), Gaps = 62/237 (26%) Query: 60 HFLLVRWDLFQEQKLDSIVS-----------SDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 +++ R + + + +V S++P D VR +K+ Y+ L Sbjct: 17 NYIQRRIKAYGDLRYSYLVMNKKIPLHPAIISNYPLDWVREY---QKNSYH--------L 65 Query: 109 FCPVFHTLPENITPPAGMDN-----------------------RYCSLTFDVARIRIGLM 145 PV T + I+P + DN Y + D + L Sbjct: 66 IDPVILTARDKISPFSWDDNSVINKKSTESAVFKLAREYNIVNGYTFVLHDNSNNMATLN 125 Query: 146 LLFPKGRIILRDR--------------LWEIGLLAAYQANMFKSYDVHWG--KDFELTGR 189 + I D L +L Y N ++H K + R Sbjct: 126 ISNGNDDSIFFDENIEKYKEKIQMLLILTHEKMLGLYHNNSIN-NELHGSNIKKDIFSPR 184 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L W S GKT EI++IL I R+TV +I +++RK AI + ++ Sbjct: 185 ENEILYWASVGKTYSEISIILEIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|284028851|ref|YP_003378782.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808144|gb|ADB29983.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 252 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 13/189 (6%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMD 127 ++ +V D ++ + +E+ N RP L F ++ Sbjct: 53 DRFDPDVVLMDIRMPVMDGLVATERITRANQEAGRSRPAVLVLTTFDDEAYVLSAVRAGA 112 Query: 128 NRYCSLTFD-------VARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDV 178 + + D V + G L+ P +L +R E+ + A A + D Sbjct: 113 SGFLLKDTDPDLLVAAVRAVHRGDSLVDPASTRVLLERCVELERQVGADPVAAAPHAADG 172 Query: 179 HW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 W G +L+ RE + L W++ G ++ ++A L +S TV +++S++ K +R A+ Sbjct: 173 RWTGLLAQLSERERDVLVWMARGLSNRDLANKLFVSETTVKTHVSSVLSKLGLSSRVQAV 232 Query: 238 AYAVRNNIV 246 A +V Sbjct: 233 VVAYEAGVV 241 >gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ + + +V D LT RE E L I+EG +S EIA L IS TV + A Sbjct: 142 ALIRNFLDRVRSGEEVS---DSVLTPREEEVLKLIAEGHSSKEIADTLFISIKTVQRHRA 198 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K + R YA+R +V Sbjct: 199 NLLHKLGLRDRLELTRYAIRAGLV 222 >gi|259418825|ref|ZP_05742742.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] gi|259345047|gb|EEW56901.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] Length = 151 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE + L+ ++EGK + IA LG+S +TV +I ++ K R+ A + + Sbjct: 83 NIRLTTREAQVLSCVAEGKQNKLIANRLGLSEHTVKLHIHHVIAKLGVNNRTEAAVWFLE 142 Query: 243 NN 244 N+ Sbjct: 143 NH 144 >gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A] gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11] gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli H591] gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A] gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11] gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli H591] Length = 148 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 74 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 134 IELIKTALRMGV 145 >gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 194 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L +L EI +A + + DV LT RE E L ++ G ++ EIA LG+S Sbjct: 109 LARQLREI--VAHPEVDRLPQVDVPR-----LTPRESEVLPLLARGFSNKEIARDLGVSP 161 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV +++A + K R+ A++ A ++ Sbjct: 162 DTVKDHLARLYSKLNAGDRTEAVSRARSIGLL 193 >gi|307326772|ref|ZP_07605964.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887535|gb|EFN18529.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 18/140 (12%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 E + + D L V G +L P L D+L + Sbjct: 85 ETDGDILRAVEAGAAGYLLKDMARAELAEAVRSAARGETVLAPSVAARLMDQLRD----- 139 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + L+ RE L +++G T+ EI L I +TV ++ Sbjct: 140 -------------RPERPRLSERETAVLRLVAQGCTNAEIGRRLFIGESTVKTHLLRAFG 186 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K R+ A+ A+R ++ Sbjct: 187 KLGVDDRTAAVTSAMRLGLL 206 >gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 256 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P + RL E Y Sbjct: 102 VYEALHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPS----VARRLVE-----QYTRP 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LTGRE E L ++ G ++ EIA L +S +TV ++ +++ K + Sbjct: 153 PAARAPRPDPRLGLLTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLR 212 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A ++ Sbjct: 213 DRVQAVICAYETGLI 227 >gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736] gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1044] gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1125] Length = 147 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 73 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 132 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 133 IELIKTALRMGV 144 >gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 221 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 10/131 (7%) Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 L + D R L + + +G ++ P RL E + A Sbjct: 101 LRSGASGFLLKDARPEVLLDSIRQAHVGGAVIAPTTTR----RLLETVVAAPTV------ 150 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D H K LT RE E ++ GK++ EIA L ++ TV +++ I+ K + R Sbjct: 151 PDEHAQKLERLTAREREVFELVARGKSNAEIAGELFMAGPTVKTHVSHILTKLEVRDRIH 210 Query: 236 AIAYAVRNNIV 246 A+ +A +V Sbjct: 211 AVIFAYEAGVV 221 >gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 100 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 41/62 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + I+ G T+ EIA L IS+ TV+N+I++I+ KT T+ R +++A++ Sbjct: 9 PVSLSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRVALVSWALK 68 Query: 243 NN 244 + Sbjct: 69 SG 70 >gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 349 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE E L W+ +GK + +IA ILG S TV ++ + K +TR+ A A+ Sbjct: 280 FKLTAREAEVLYWVIKGKINRDIAGILGASPATVKKHLEHVYAKLGVETRTAAAGMALNR 339 >gi|262204346|ref|YP_003275554.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087693|gb|ACY23661.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 213 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 10/208 (4%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + + + + + VG + +L E + D +++ +R + + Sbjct: 14 VREGLRSMLGLLDTLDVVGVAASGEEALELVDETEPDVLLTD------LRMPGIGGVEAI 67 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIGLMLLFPKGRIILRD 157 ++ + T ++ T A + D I L+ L Sbjct: 68 SRLVASGSSTRAVALTTYDDDATILAALSAGALGFLNKDADPETIEAALVSAAAGRSL-- 125 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L E L A LT REVE + I+EG ++ +IA L +S +TV Sbjct: 126 -LDEKALRALMSRGRSADDPPRRTPPDGLTEREVEVIALIAEGLSNQQIATRLVVSLSTV 184 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 +I I+ KTA + R+ ++YA R+++ Sbjct: 185 KTHINHILAKTACRDRAALVSYAFRHHL 212 >gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1] gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 496 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 6/175 (3%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCS 132 LD I D P + R +A EK + + R + T Y Sbjct: 316 LDFI---DEPAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSADTVNIQDAVCYLL 372 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGRE 190 + D+ + + L +++D W L AN+ K S + +LT RE Sbjct: 373 VLMDITERKRTELELVAAIEEVMKDASWFSRTLIEKLANVKKVNSPQLPSVSFTDLTARE 432 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I EG EIA L ++ NTV N++A++ K +RS AI +A + Sbjct: 433 RDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWARERGL 487 >gi|257482151|ref|ZP_05636192.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625831|ref|ZP_06458785.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647709|ref|ZP_06479052.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|330987557|gb|EGH85660.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 77 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 >gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria meningitidis alpha153] gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M6190] gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis ES14902] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 76/222 (34%), Gaps = 18/222 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 + ++I +D + + AL G L + + + P ++ + Sbjct: 1 MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56 Query: 91 ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + + + Q + + V + Y + + + Sbjct: 57 DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 + + + A ++ + LT RE+E L +++ G ++ Sbjct: 117 RKAAEGDNVFSPE------MTAKLVKSLISPQPAQGTQALSSLTPRELEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis WUE 2594] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|311898876|dbj|BAJ31284.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 246 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A A+R Sbjct: 184 ELSGREVEVLRLVAEGQSNKAIGVAMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 243 Query: 245 IV 246 I+ Sbjct: 244 II 245 >gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 229 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 7/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + L + F + + + Sbjct: 51 DVVLMDIRMPGTDGLTATRMISADPDLAGVRIVMLTTFEVDEYVVQSLRAGASGFLGKGA 110 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190 + + + + ++ + GL+A++ A + + ++ LTGRE Sbjct: 111 EPEELLNAIRVAAAGEALLSP--VATKGLIASFLAQGGSAGEGADAAEYAERLAALTGRE 168 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G ++D+IA L +S TV ++ M K + R+ + A + +V Sbjct: 169 REVLVQVAGGHSNDQIADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 224 >gi|258651492|ref|YP_003200648.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554717|gb|ACV77659.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 219 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 9/175 (5%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------PENITPPAGMDNRYC 131 ++S+ P ++ + + + + Q ++L VF L + I Y Sbjct: 48 ITSNPPDVVLLDVHMPDGGGRSVLEQVHSKLPDVVFLALSVSDAAEDVIAVIRAGARGYV 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + T + ++ + + RL +L A+ + D L+ RE Sbjct: 108 TKTISGRELADAIVRVSAGDAVFSP-RLAGF-VLDAFSDRGSPAPITDPELDL-LSPRER 164 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G EIA L IS TV +++S++RKT R +A +V Sbjct: 165 EVLKLLARGYAYKEIAAQLFISIKTVETHVSSVLRKTQKSNRYELSRWASDRRLV 219 >gi|284043388|ref|YP_003393728.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947609|gb|ADB50353.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 535 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 45/89 (50%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL LA + + + G L+ RE++ L ++ G T+ IA L +S TV Sbjct: 447 RLGATPDLARAERVAGRPAGIAAGDLHGLSPRELQVLRLVAAGTTNRAIAAELVLSERTV 506 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++++I+ K +R+ A AYA N +V Sbjct: 507 DRHVSNILAKLRLPSRTAATAYAYENELV 535 >gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis 8013] gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria meningitidis alpha710] gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis N1568] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|238060490|ref|ZP_04605199.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882301|gb|EEP71129.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 2/170 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + L+ + + T + + Sbjct: 50 DVVIMDIRMPEVDGLTATAEICADPELRTARVVILTTYETDEYVAQALRAGASGFIGKGI 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ L+A + A + H + LT RE E + Sbjct: 110 GAEDLLDAVRTIAAGDTLLSPAATR--SLVARFLATPDEPAHQHPEQLGVLTAREREMVA 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G ++ EIA + +S TV ++ M K + R+ + A + + Sbjct: 168 LVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYQTGL 217 >gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ELT RE E L ++ G T+ IA L +S TV N+++++ K R+ A+ Sbjct: 142 SALAPFPELTDREREILDLVARGLTNPAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAV 201 Query: 238 AYAVRNNI 245 A A + Sbjct: 202 ARARDAGL 209 >gi|229021072|ref|ZP_04177731.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229024513|ref|ZP_04180960.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228736801|gb|EEL87349.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740232|gb|EEL90571.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 188 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 ++ + S + G + E LT E L IS+ KT+ EI+ L IS+ TV +I+SI+ Sbjct: 105 SHMGYILFSKNQIIGNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSII 164 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK +R GA+ ++ ++ Sbjct: 165 RKLGVDSRVGAVVKGIKKGLI 185 >gi|284029334|ref|YP_003379265.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808627|gb|ADB30466.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 228 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 3/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L G Y L V R+ G L + + + A + Sbjct: 94 VLAALKAGANGFLGKSADYEELRQAVGRVAAGDASLSA---VATNTVVGHLASTARKPSV 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ + LT RE E +T ++ G ++D IA L IS T ++ M K Sbjct: 151 HEQASAEELRRVDSLTSREREVVTLVARGLSNDVIAEHLFISPMTAKTHVNRAMSKLHVS 210 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A+R ++ Sbjct: 211 DRAQLVVAALRAGLL 225 >gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4] gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4] Length = 295 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGRE 190 D R+ + R I + D + L+ RE Sbjct: 157 AVDSRRLAEAVRRAHHDRRYIDPALSALTARPKREPSPRAAPVDGQLVQPKGAMPLSRRE 216 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L ++EG + IA +L +S TV ++ SI+RK + + R+ A+ A R+ I+ Sbjct: 217 YQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 272 >gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 220 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 21/185 (11%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 + +R V +++P V + + D+Y VF L Sbjct: 53 MDIRMPHGDGLTATREVLAEFPGTRVIVITTFDLDEY-------------VFEALDSGAA 99 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 D L+ V L +G +L RL ++ + G Sbjct: 100 GFLLKDADPEELSSAV--------LTVAEGGSVLSPRLTSRLIVEFARRKPAPMSTARSG 151 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D L+ RE++ + +S+G +++IA L + ++TV ++I++I +K +TR + +A Sbjct: 152 SDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAY 211 Query: 242 RNNIV 246 RNN++ Sbjct: 212 RNNVI 216 >gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 223 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 40/69 (57%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + +LT RE + L + +G+++ EIA L IS +TV +++ ++ K + R+GA Sbjct: 152 TERAQREQLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDRTGAA 211 Query: 238 AYAVRNNIV 246 A+R+ IV Sbjct: 212 IEAIRHGIV 220 >gi|119963767|ref|YP_948582.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119950626|gb|ABM09537.1| putative transcriptional regulator, LuxR family [Arthrobacter aurescens TC1] Length = 544 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A++ + LT RE+E L I+ G + IA L +S TV ++++I+ K Sbjct: 466 AADVLELTGETSVDASPLTSRELEVLRLIAGGNANRTIARELYLSEKTVARHVSNILSKL 525 Query: 229 ATKTRSGAIAYAVRNNIV 246 A +R+ A YA + ++ Sbjct: 526 AVPSRAAATGYAFEHGLI 543 >gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241] gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241] Length = 592 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + E T + D L R++ +D + L + + Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V Q +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 233 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 2/165 (1%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + E ++ ++ P + + L A I Sbjct: 68 AEAADGAEALEVCRHLRPTAALLDVKMPGLTGIEVCRQLRSECPEVLSILITTFAEPAII 127 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREVECLTWISEGK 201 R L L +A + + + LT RE E L +++G Sbjct: 128 QAAREAGARGYLSKETDPPALATQLRAIIADPTQDRLPRVEVPRLTPRESEVLPLLAQGL 187 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA LG+S +TV +++A + K R+ A++ A ++ Sbjct: 188 SNKEIARELGVSPDTVKDHLARMYGKLDACDRTEAVSRARTIGLL 232 >gi|304409402|ref|ZP_07391022.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307303760|ref|ZP_07583513.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304351920|gb|EFM16318.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306912658|gb|EFN43081.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 216 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 N + + ++ + + G +I L ++ + V ++ Sbjct: 102 AGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMS-------EPKPAPSVGVTRNE 154 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L++++ G ++ EIA + ++ TV N++++I+ K + R+ A+ ++ Sbjct: 155 LLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLA 214 Query: 245 IV 246 ++ Sbjct: 215 LI 216 >gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 221 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG + EIA +L IS TV + A+++ K K R YA+R + Sbjct: 159 LTPREEEILKLIAEGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIRVGL 218 Query: 246 V 246 + Sbjct: 219 I 219 >gi|148555438|ref|YP_001263020.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500628|gb|ABQ68882.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 879 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 39/81 (48%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A Q + + +F L+ RE E + ++EG + EIAV LGIS TV + I Sbjct: 799 ATLQQSSPRRGVEQAPNNFTLSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIH 858 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K +RS AIA A I+ Sbjct: 859 EKLGVASRSQAIARARDLLII 879 >gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240355] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|311745099|ref|ZP_07718884.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1] gi|126577613|gb|EAZ81833.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1] Length = 216 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 7/180 (3%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 L Q +K +I ++ + + + + + VF Sbjct: 41 LEQLEKDSNIDLILMDIEMPKMNGIEAVELVSKKYPQIKTIMLTVFDNDEYIFKAVQAGA 100 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 N Y D + G+ G + L + LL ++ L Sbjct: 101 NGYFLKEVDPTTLFKGIKETLEGGAAMTPSVALKTLKLLRN------PPNFEEPKEEITL 154 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T REVE L S+G ++I L IS TV +I +I K ++ A+ AV+N I+ Sbjct: 155 TKREVEILEQTSKGLNYNQIGENLFISPKTVRKHIENIYHKLQVHSKLEAVQKAVKNRII 214 >gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 12/178 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGM---DN 128 S+V ++ P ++ + + E D Q + P V T + + Sbjct: 43 SVVRAERPDVVLMDVRMPEIDGIRATEQILAGMAEPPRIVVVTTFENDAYVYDALRVGAA 102 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + + + L+ ++ + LAA A W LT Sbjct: 103 GFLLKRAAAEELVSAVRLVARSDSLLYPAAVRG---LAAEHARNRPPVAPPWVAR--LTE 157 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L ++ G T+ EIA +G+ TV ++AS++ K+ + R+ A+ A + V Sbjct: 158 REAEVLRLVATGLTNAEIAGRMGVGPATVKTHVASVLAKSGARDRTQAVILAYESGFV 215 >gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli STEC_7v] Length = 148 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 74 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 134 IELIKTALRMGV 145 >gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 278 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L ++EG ++ E A L +S TV Y+ SI K R+ A+ A R+ Sbjct: 215 YALTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVARRS 274 Query: 244 NIV 246 ++ Sbjct: 275 GLL 277 >gi|192360157|ref|YP_001981723.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190686322|gb|ACE84000.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 238 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E E LTW + G T +IA L IS +TV+ ++ + + K + + A++ A+ Sbjct: 174 VHLTAKEQEILTWSAAGYTKSQIAHKLCISVHTVDFHVRNCLAKLEAQNITHAVSRALNL 233 Query: 244 NIV 246 +++ Sbjct: 234 SLI 236 >gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response regulator [Neisseria meningitidis 053442] gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria meningitidis 053442] gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria meningitidis alpha275] Length = 218 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 244 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 28/234 (11%) Query: 27 PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 P S LLA ++ ++ R+ ++ +G + ++ + ++ PF L Sbjct: 24 PPESSLLAPVLLVEDEPLIQRRLDSMLRQLGYQRDAIAFAASLKQARAH---LANQPFAL 80 Query: 87 -VRCMALSEKDKYYNVLQ-------------RPTELFCPVFHTLPENITPPAGMDNRYCS 132 + + L + + + + L T + Sbjct: 81 ALVDIGLPDGSGIDLIAEMHAADAALPILVISAWSTEDAILAALRAGATGYVLKERDDME 140 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + + G + P I R + E L ++ QA + L+ RE E Sbjct: 141 VVLSIRSVLRGGAPIDP---FIARRIIDEFHLGSSQQAQTQQCE--------TLSPREGE 189 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +++G + EIA L +SR TV +I I RK A +R+ A+ A ++ Sbjct: 190 ILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAVHEARSRGLL 243 >gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli] gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli DH1] gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] Length = 148 Score = 89.3 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT RE E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 74 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 134 IELIKTALRMGV 145 >gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 215 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISE 199 L+ I+ R+ G + A + + D H G+ LTGRE E L ++ Sbjct: 100 LLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADQHGGRAPAPFPGLTGREGEVLRLMAR 159 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G ++ EIA L + TV ++++++ K + R+ A+ A + V Sbjct: 160 GLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 206 >gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ Y + + + LT RE E L ++EG +S EIA +L IS TV+ + A Sbjct: 139 ALIRNYLDRVRHGEEP---PEQILTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRA 195 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K + R YA+R ++ Sbjct: 196 NLLHKLGLRDRLELTRYAIRAGLI 219 >gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143 +R ++ + ++ R + V T + + + ++ G Sbjct: 59 IRMPEMNGIEATREIVARDADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADG 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ ++ L+ + + +LT RE E L I++G ++ Sbjct: 119 VRVVASGEALLAPTVTRR--LITEFSKLAETPRPPALARIGDLTERETEVLVLIAQGLSN 176 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ +T+ +++ I+ K + R+ A +A +V Sbjct: 177 AEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219 >gi|291298154|ref|YP_003509432.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567374|gb|ADD40339.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 14/171 (8%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTF 135 P ++ + + + D + +L P F N + Sbjct: 49 PDVVLMDVRMPDMDGIEATRRLRRDLTEPPKVVVITTFENDEYVFDALRAGANGFVLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 I + + ++ + + + LT RE E L Sbjct: 109 PATEIAHAIRTVASGDALLFPEAIRALAAARPAPPGNPHG-------PIALTAREAEVLR 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ +IA L +S T+ ++ S++ K R+ A+ A + V Sbjct: 162 LMATGLSNQDIATHLTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESGFV 212 >gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273] gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273] Length = 592 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 13/233 (5%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 T + D L R++ +D + L + + +V Q +D + Sbjct: 366 TCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN--VVGLAEDGNQAID-LCG 422 Query: 80 SDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSL 133 P ++ + + D + Q+ + +F T + + + + Sbjct: 423 RLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQDTEQALESLRNGADGFLLK 482 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 + + + + L+ G +I + +I + + K +ELT RE+E Sbjct: 483 SIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKATAYELTAREIEI 538 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +++G IA L +S TV NY ++ K + + AI A+ I+ Sbjct: 539 LQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAILKALEIGII 591 >gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] Length = 218 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 241 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 18/182 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFC---PVFHTLPENIT-----PPAGMDNRYCSLT 134 P ++ + + D Y + + + PV + +T + Y Sbjct: 59 PDLVISDVMMPRCDGYGLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKP 118 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQAN---MFKSYDVHWGKDFEL- 186 FD + + + + +LR+ ++G +A M D KD L Sbjct: 119 FDPEELVARVRNVVRRQDRLLREAARFADTDVGQMARQITEIRTMLAHGDGSSSKDVALH 178 Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N Sbjct: 179 NFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENQ 238 Query: 245 IV 246 +V Sbjct: 239 LV 240 >gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum] Length = 244 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 31/226 (13%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 ++ + + S+F++ + Q + S++P ++ E ++ Sbjct: 9 IKRKLKGVGDVW-FSYFMMSKNSTSQ-----PYIISNYPEAWMKEYIKKEMFLSDPIIVA 62 Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLT----------------FDVARIRIGLMLLF 148 P + +T A + + S +VA + I L Sbjct: 63 SLARITPFSWDDNDIVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANHLED 122 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSY---------DVHWGKDFELTGREVECLTWISE 199 +++ ++ +L +Y ++ L+ RE E L +S Sbjct: 123 ANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINDQDNPPDNSRNALLSPRETEVLFLVSS 182 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 G+T E++ ILGIS TV +I + +RK AI A+ N+ Sbjct: 183 GRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228 >gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 208 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 10/159 (6%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143 +R + + + + + T ++ + N Y + I Sbjct: 54 IRMPIMDGVLATKMIKESFGSIRIIILTTFKDDQYIKEALKNGAQGYILKSQSADSIIES 113 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L + + + +A+ +M K D +LT RE E + W+ EG ++ Sbjct: 114 LRTVSKGNVVFETE-------IASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSN 166 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 EI+ L +S TV NY+ ++ K + R+ + ++ Sbjct: 167 REISAALYLSEGTVRNYVTQLLEKLNVRDRTQLAIFYLK 205 >gi|289626196|ref|ZP_06459150.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648347|ref|ZP_06479690.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|330868455|gb|EGH03164.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 909 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 17/178 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135 D ++ ++ + + + + E+ P+ + + I R SL Sbjct: 732 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 791 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188 I L + L ++L ++ LL A+ + + D L+ Sbjct: 792 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTPEPAHDSDC-LSV 850 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 851 RELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 908 >gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 167 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L + LT RE E L ++++G ++ +IA L +S TV N++ + Sbjct: 83 LVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQAT 142 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 RK R YA+ + + Sbjct: 143 FRKLQVANRVELARYAIEHGL 163 >gi|225872958|ref|YP_002754415.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] gi|225792212|gb|ACO32302.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] Length = 216 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE+E L ++ G + IA L IS +TV ++IA+I+ K R+ A+ AVR Sbjct: 149 NDELSKRELEILRQVAAGLPNKLIAERLSISPDTVKSHIANILSKLGANDRTHAVTLAVR 208 Query: 243 NN 244 Sbjct: 209 RG 210 >gi|330868990|gb|EGH03699.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011382|gb|EGH91438.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 74 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 13 NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 72 >gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 147 LFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTS 203 + + + +L LLA A+QA + D + LT RE ECL + ++G T+ Sbjct: 150 VAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTA 209 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L S TVN ++ S RK + R A+ + ++ Sbjct: 210 KSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|302540851|ref|ZP_07293193.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458469|gb|EFL21562.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 228 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D LT V +R G LL P L R + G A Sbjct: 89 VYAALSAGASGFLLKDVTPEQLTAAVRTVRTGDALLAPAITRRLVQRFTQRGSDTATLHR 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S LT RE+E L ++ G ++ E+A L ++ TV ++A I+ K + Sbjct: 149 DLAS----------LTPRELEVLGLLARGLSNAELATRLYLAEATVKTHVARILAKLGLR 198 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 199 DRVQAVIAAYETGLV 213 >gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 209 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 18/132 (13%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + + D+ L ++ + G +L + L +R E L+ Sbjct: 93 VFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVLSESVKQHLLERRPENDPLSV---- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE + L WI+ G ++ +IA L IS TV +I +++RK Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVH 194 Query: 232 TRSGAIAYAVRN 243 +R A + Sbjct: 195 SRVAATVLYLEQ 206 >gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 74 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A Sbjct: 3 DNDFTHKPLLTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQA 62 Query: 237 IAYAVRNN 244 + +R Sbjct: 63 VVELLRMG 70 >gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 336 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F+LT RE E L W+ +GK + +I ILG S T+ ++ + K +TR+ A A+ Sbjct: 267 FKLTAREAEVLYWVVKGKVNRDIGDILGASPATIKKHLERVYAKLGVETRTAAAGRAMNR 326 >gi|108757533|ref|YP_632250.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108461413|gb|ABF86598.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 246 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 19/202 (9%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPEN 119 ++ L E L+ V P L+ + L D V R ++ +F E Sbjct: 44 IIGTALSGEAALEE-VPKLMPDVLLLDLGLPRMSGIDVTREVKARFPKIEILIFTIFDEE 102 Query: 120 ITPPAGMDNRYCS----------LTFDVARIRIGLMLLFP--KGRIILRDRLW--EIGLL 165 + + + +R G ++ P R++ R+ L+ Sbjct: 103 DKVLEAVKAGASGYLLKGAPVDKIIEAIKEVRAGGTVIQPNLARRLLRHFRVEPDASPLI 162 Query: 166 AAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + A + D+ + L+ RE E L I++G ++ E A +L +S+ T+ ++ I Sbjct: 163 SPPAAPEPSASDLPQEPLLKPLSDREREILQLIAKGVSNSEAARLLDLSKATIRTHLEHI 222 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 RK R A+ +R ++ Sbjct: 223 YRKLEVTNRVEAVTEGIRKGLI 244 >gi|75910296|ref|YP_324592.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704021|gb|ABA23697.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 237 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + + LT RE++ L I +G ++ IA L +S TV ++ +I+ K R+ Sbjct: 168 SHIVETYPLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIA 227 Query: 238 AYAVRNNIV 246 A+R +V Sbjct: 228 VRALRAGLV 236 >gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 7/164 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI---TPPAGMDNRYCSLTFDVARIRIG 143 VR L + RP V T + + + A + G Sbjct: 56 VRMPELDGIAATRLITARPRAPRVLVLTTFDLDAYVFDALRAGASGFLLKDVHAAELLSG 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201 + ++ ++ L+ Y ++ D E LT RE + L I+ G Sbjct: 116 IRVVASGESVLAPSATRR--LIGHYASGPGVRTPDPEAPAALETLTAREHDVLRLIASGL 173 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T+ EIA LGI+ TV +++ +++RK + R A A + Sbjct: 174 TNAEIAGHLGIAVGTVKSHVNAVLRKLELRDRVQATILAYDLGL 217 >gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1065 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 17/216 (7%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSE 94 + + R L + G ++ ++ + Q L + + + R + L+E Sbjct: 862 LHQFPQALDILDRFRELLDRPG-DIYMTIQMLVLQVVALYQVGKKEQALTVTARLLNLTE 920 Query: 95 KDKYYNV----LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 +D Y V + ++ + P L + G Sbjct: 921 RDGYLRVYLDQGEPMRQVLLAFLASHGRQHELPRSTAAYASKLLAAFKQEGQG-----TS 975 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + A A+ + V LT RE E L ++ G ++ EIA L Sbjct: 976 PSEVSATTPSPSSAFAPKMASREPALVV------SLTRREQEVLCLLAAGASNQEIAQTL 1029 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS +TV ++ ++ K R+ AIA A +++ Sbjct: 1030 VISLDTVKKHVGRLLDKLGATNRTQAIAQARARSLL 1065 >gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 213 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 12/176 (6%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRP------TELFCPVFHTLPENITPPAGMDNRY 130 +V P L+ + + + Q + + + P I Y Sbjct: 42 LVEKHKPTVLILDLNMPRLHGIEVLRQTRTSSPHTRVIILSMHNDEPYVIETLRAGAMAY 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + I L + R + L E + A S + +T RE Sbjct: 102 ILKGSESQEIVHALKEVLAGRRFLSAP-LSEWAINALVTKPADNSDPLQ-----SITPRE 155 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +EG ++ EIA L IS T + +++RK +T++ + +A+R ++ Sbjct: 156 RMVLQLAAEGASNSEIAEKLFISPRTAETHRTNLLRKLGLQTQTDLVRFAIRKGLI 211 >gi|167465455|ref|ZP_02330544.1| two-component response regulator LiaR [Paenibacillus larvae subsp. larvae BRL-230010] Length = 220 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L I++GKT+ +IA L IS TV ++++++ K R+ YA R Sbjct: 153 EEGLTIREKEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHR 212 Query: 243 NN 244 Sbjct: 213 KG 214 >gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 202 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 18/133 (13%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 TL + D L V + G+ + P+ R+ Sbjct: 88 ATLDAGVDGCLLKDAGATDLVSAVHQAAHGIPIFDPRVGERAAPRMRS------------ 135 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT RE + L + G+T+ EIA LG++R+TV Y+ + MRK + R Sbjct: 136 ------RLHDTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNR 189 Query: 234 SGAIAYAVRNNIV 246 IA A ++ ++ Sbjct: 190 IELIAKAAQSGLL 202 >gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 18/182 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFC---PVFHTLPENIT-----PPAGMDNRYCSLT 134 P ++ + + D Y + + + PV + +T + Y Sbjct: 51 PDLVISDVMMPRCDGYGLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKP 110 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQAN---MFKSYDVHWGKDFEL- 186 FD + + + + +LR+ ++G +A M D KD L Sbjct: 111 FDPEELVARVRNVVRRQDRLLREAARFADTDVGQMARQITEIRTMLAHGDGSSSKDVALH 170 Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ N Sbjct: 171 NFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENQ 230 Query: 245 IV 246 +V Sbjct: 231 LV 232 >gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis 961-5945] gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis G2136] Length = 218 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 147 LFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTS 203 + + + +L LLA A+QA + D + LT RE ECL + ++G TS Sbjct: 150 VAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHYIALTRRERECLQYSAKGLTS 209 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L S TVN ++ S RK + R A+ + ++ Sbjct: 210 KRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 255 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 13/134 (9%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEIG---------LLAAYQANM 172 M + + +IG + P + L D E G +A+Y M Sbjct: 120 RAMTRAAIVVPVHLPFGQIGAVSFNPLDPDLTELDDIFLENGDAFGIYGRTFIASYVHAM 179 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + G L+ REVECL W + GKT EI++I+G SR TV +I + K Sbjct: 180 GSVQALPPGSR--LSKREVECLRWAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVN 237 Query: 233 RSGAIAYAVRNNIV 246 RS + A + + Sbjct: 238 RSQTVFKAAQLGYI 251 >gi|78778542|ref|YP_396654.1| LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712041|gb|ABB49218.1| transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 92 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 41/63 (65%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + +++G T+ EIAV L IS+ TV+N+++++ KT +K R + +A+ N Sbjct: 14 MGLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73 Query: 244 NIV 246 + Sbjct: 74 GKI 76 >gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae B728a] gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae] gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae pv. syringae B728a] Length = 247 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 25/198 (12%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + + ++ S++P ++ S +++ P F E G++ Sbjct: 52 RTVKPVILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFF--WREARHAIQGVETDDF 109 Query: 132 SLTFDVARIRIGLMLLFPKGRII------------------LRDRLWEIGL-LAAYQANM 172 ++ G + +RD+ +I + L + + Sbjct: 110 LKRSAKYQLSSGATFTLHDASGLFAALSLCNARQQTDFDQRIRDKAADIQMSLIRFHDRL 169 Query: 173 FKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 K+ H +L+ RE+ L W++ GK EIA I IS TV +++++ K Sbjct: 170 TKTQAPHELFPQPTRCKLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKL 229 Query: 229 ATKTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 230 EVRTAKQAVYKAINMGMV 247 >gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 226 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 13/182 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + +S P ++ + + D L + F + Sbjct: 42 RLAASHLPDVVLMDIRMPGTDGLAATRHISADPALAAVHVVMLTTFEVDEYVVQSLRAGA 101 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDF 184 + + + + + ++ L+ + A + V + Sbjct: 102 AGFLGKGAEPSELLGAIRTAAAGDALLSPAATR--SLITRFLAQAPGTGPATGVDSARLA 159 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A Sbjct: 160 ALTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETG 219 Query: 245 IV 246 +V Sbjct: 220 LV 221 >gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 218 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|270307800|ref|YP_003329858.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270153692|gb|ACZ61530.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 + + Y + I + + ++ D + LL +S + Sbjct: 93 LGLLEAGASGYLLKSAKSDEIVGAIRAIKAGESVL--DSIATRKLLERVVNVSKESDEDK 150 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L+ REVE L S+G ++ EIA L +S TV ++++I K R+ AI Sbjct: 151 VRG--QLSPREVEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVK 208 Query: 240 AVRNNIV 246 R V Sbjct: 209 GFREGYV 215 >gi|163847172|ref|YP_001635216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525011|ref|YP_002569482.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668461|gb|ABY34827.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448890|gb|ACM53156.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 219 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 20/219 (9%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-------SIVSSDWPFDLVR 88 ++ D + + + E G F +V ++ I D ++ Sbjct: 7 ILIADDHTMFRQGLREILERKG--GFQVVAEVRDGAAAVEAASTTKPDIALLDVSMPVMT 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147 + + + + R H + + N Y D + + ++ Sbjct: 65 GIEAARQIAQVSPQTRCV---VLTMHRDEQTVLEALRAGANAYLLKDADATELIEAIHVV 121 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + + + ++ + D + LT RE + L +++G + IA Sbjct: 122 YRGEAALAGSAAARV-------LDLLRRNDTSPALNEVLTPRERDILALLAQGDDNRAIA 174 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L ++ TV N ++ I +K R+ A AV+ +V Sbjct: 175 LKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213 >gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] Length = 356 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE E L +++G T+ EIA L IS NTV ++ SI K TRS A+A Sbjct: 297 LTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRSAAVAK 350 >gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica ST-640] gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria lactamica 020-06] Length = 218 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|300022129|ref|YP_003754740.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299523950|gb|ADJ22419.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 223 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 8/164 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D + + K ++L R + V ++ + I + Y Sbjct: 49 DIVLIDINMKGMTGIDTLRHLKATHLLAR--YIILTVSNSEDDLIEALRAGADGYLLKDM 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + +L G +L+D L E+ ++ + + LT RE E L Sbjct: 107 EPEDL-CTNLLKASSGATVLQDTLAEV-----LKSALLSPVSAGSSGEELLTPREREILE 160 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ++EG + IA LGIS TV ++ +++RK +R A + Sbjct: 161 CLAEGLNNKTIARKLGISDATVKVHVKNVLRKLNLASRLEAAVW 204 >gi|284033634|ref|YP_003383565.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812927|gb|ADB34766.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L G A D + LT RE E L ++ G+++ EIA L +S Sbjct: 122 EALLSPGATRAVITRALSRPDAPPPERLASLTAREREVLRLVAAGRSNQEIADDLVVSPL 181 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T ++A I+ K + R + A ++ Sbjct: 182 TAKTHVARILAKLGARDRVHLVIAAYEAGLL 212 >gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 209 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 19/159 (11%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D +R + D VL E VF + + D L ++ + G Sbjct: 67 DTLRSLRAQGIDARIIVLTVSDEQ-SDVFALMDAGVDGYLLKDTDTPELLDNIRKAAAGE 125 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++L R L +R E L+ LT RE++ L W++ G ++ Sbjct: 126 VVLSETVRQHLLNRQPENDPLSC------------------LTDRELDVLQWLATGMSNK 167 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L IS TV +I +++RK +R A + Sbjct: 168 QIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206 >gi|298241116|ref|ZP_06964923.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554170|gb|EFH88034.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 938 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 21/173 (12%) Query: 85 DLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141 D V M L + Y + ++ +L V PE Y D Sbjct: 772 DHVLEMWLLQTQAYQMLQRQQDALAQLAQAVHLAAPEG----------YIRSFVDEGPSL 821 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGREVEC 193 L+ K + + +D + LL A+ + L+ RE + Sbjct: 822 AALLSQLRKQKPLAKDLPYLETLLRAFDQQPIPQPTQLEKEPSLSLQPLLDPLSAREQDV 881 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ +IA L ++ TV ++I I+ K R+ A+A A ++ Sbjct: 882 LHLLARGASNQDIAEALVVTPGTVKHHITHILSKLEATNRTQAVARAQALGLL 934 >gi|225620688|ref|YP_002721946.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] gi|225215508|gb|ACN84242.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] Length = 317 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 40/67 (59%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N + D LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I K+ Sbjct: 245 NSKIENESGKEIDINLTRREKEILSYLLDGKTNKEVSLILSISLNTVNNHVANIYEKSGV 304 Query: 231 KTRSGAI 237 K R + Sbjct: 305 KNRVELV 311 >gi|297199555|ref|ZP_06916952.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713519|gb|EDY57553.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + L + D R L + + G LL P L +R Sbjct: 93 IVEALRAGASGFLVKDTRPADLLDAIRTVAAGEALLSPGPTARLIERFLRS--------- 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S V G L+ RE E L ++ G + EIA LG+S T +++ IM K + Sbjct: 144 --PSVPVAGGGPECLSDREREVLALVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGAR 201 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + V Sbjct: 202 DRAQLVIVAYESGTV 216 >gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 253 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGL--MLLFPKGRIILRDRLWEIGL--LAAYQANM 172 P P + L F V+ +G + F I + L ++ LA + + Sbjct: 120 PPPALPLMQTEEGRTDLLFPVSLGAMGNGYIGFFGVDGAIDSELLIDLHRKSLAMMRETL 179 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ D +L RE+ECL + G S+ I L +S +TVN Y+ S K Sbjct: 180 RLAFGAAPVAD-KLNEREIECLQLVGNGMKSEAIGERLNLSVHTVNAYLGSATTKLDAVN 238 Query: 233 RSGAIAYAVRNNIV 246 R AIA ++R I+ Sbjct: 239 RIQAIAKSIRLGII 252 >gi|170738931|ref|YP_001767586.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193205|gb|ACA15152.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 301 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 12/110 (10%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 T D R+++ + I+LR L G + + LT RE E Sbjct: 197 ATPDGRRLQLSRIGQVGGDEILLRLALDGGGEI------------ERLRRALGLTQREAE 244 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L W+S GK S +I IL +S TV ++ + K + R+ A A VR Sbjct: 245 VLLWVSRGKASRDIGEILSLSPRTVTKHLEQVYAKLGVENRTSASALVVR 294 >gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 68 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 36/59 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE E + I+EG T+ EIAVIL IS TV Y+ +IM K +R IA+ +N Sbjct: 5 KLSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIAWYYKN 63 >gi|291560732|emb|CBL39532.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 222 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 6/173 (3%) Query: 78 VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V D P ++ + + E D + ++ ++ + T ++ + + Y Sbjct: 43 VRKDKPDVILMDVRMPEMDGVQCTQIIKEQYPDVKIIILTTFDDDEYVYNALKHGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + + G +I + ++ + A +H E+T E Sbjct: 103 LKGISMDELEKAINTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEITDAEW 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E + + G ++ EI+ L +S TV NY+++I+ K + R+ + V++ Sbjct: 163 EIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQSG 215 >gi|239979954|ref|ZP_04702478.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291451807|ref|ZP_06591197.1| two-component system response regulator [Streptomyces albus J1074] gi|291354756|gb|EFE81658.1| two-component system response regulator [Streptomyces albus J1074] Length = 235 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 10/147 (6%) Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 +RP L V + I G Y + A + + + + Sbjct: 96 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKNITGADLVDSIFRVQDGDAVFSP----- 150 Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S D + LT RE E L I+ G E+A L IS TV + Sbjct: 151 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEVAKQLYISVKTVES 208 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++++RK R +A +V Sbjct: 209 HVSAVLRKLQLSNRHELTRWATARRLV 235 >gi|261250785|ref|ZP_05943359.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] gi|260937658|gb|EEX93646.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] Length = 222 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201 + LL I+ D +W +A F+ + LT RE E + + G Sbjct: 114 VSLLLKGMDKIMNDEMWLSRKVAQDYIEHFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ +IA L +S NTV ++ +I +K K R A+ +A Sbjct: 174 SNVQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074] gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074] gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074] Length = 219 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ELT RE + L +++G + EIA L IS TV ++ I +K +TR+GA+A Sbjct: 152 RNPQPELTPRERDILRHLTQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVAV 211 Query: 240 AVRNNIV 246 ++ Sbjct: 212 GKERRLL 218 >gi|271965229|ref|YP_003339425.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508404|gb|ACZ86682.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 245 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSD 204 L P + R L + + +A LT RE E L+ ++EG ++ Sbjct: 135 LMPMPGPLARKLLARVRRAESGEAARPPERPCPEADRASSPLTTRERETLSLMAEGLSNK 194 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA LGIS + ++A+I+ K R+ A A A+ ++ Sbjct: 195 QIARRLGISEHGAKRHVANILAKLNCSNRTLATAVALNRGLL 236 >gi|146309197|ref|YP_001189662.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145577398|gb|ABP86930.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 220 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G+++A + LT RE + L I+ G T+ EI LGI+ T ++ Sbjct: 130 GMVSAQLLRRVVQRNQGGAPGSALTPREHQVLELIAAGFTNREIGEELGIATGTAKAHVE 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ K R+ A + +V Sbjct: 190 RVIGKLGVADRTQAAVQGIALGLV 213 >gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240013] Length = 218 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+R+N+ Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212 >gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 229 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 8/179 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMDNRYC 131 +V+ + P ++ + + D + E L F + + Sbjct: 42 ELVARERPDVVLMDIRMPRLDGIEATRRVAGEAVRVLVLTTFDLDEYVYAALRAGASGFL 101 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDF---ELT 187 ++ G+ ++ ++ I A ++ + V + ELT Sbjct: 102 LKDTPAEQLVAGVRVVAAGDALLSPSVTRRVIEQFARPAGSLVGAGSVGAARPPALDELT 161 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L I+ G ++ EIA L +++ TV ++A ++ K + R A+ A +V Sbjct: 162 ERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVVLAYEAGVV 220 >gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 203 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 12/187 (6%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 + QE + P ++ + + E + + PT +F T + Sbjct: 26 VATASNGQEALEKLAALTRQPDLILVDLQMPEMSGKKLLEELPTLSNVLIFSTEIDGELA 85 Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 + Y D I + L I + L A++Q + Sbjct: 86 QHFIQKGVRGYLLKDEDPTDIVNHIQKLLADDSYI---AISSEVLTASFQHRQNEENVPT 142 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +T ++ + L +++G T+ EIA L ++ TV Y+ + R+ AIAY Sbjct: 143 ------ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAY 196 Query: 240 AVRNNIV 246 A+R+N++ Sbjct: 197 AIRHNLI 203 >gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803] gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803] Length = 557 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + E T + D L R++ +D + L + + Sbjct: 312 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 371 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V Q +D + P ++ + + D + Q+ + +F T Sbjct: 372 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQ 428 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 429 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 484 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 485 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 544 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 545 EAVQKALEIGII 556 >gi|117928181|ref|YP_872732.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648644|gb|ABK52746.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 216 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 9/160 (5%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 VR S D + ++ ++ V + ++ + VA+ + Sbjct: 60 VRLPDGSGLDVARELRRQRPDVGIVVLTMYAGDEQLFGALEAGASAF---VAKDAPAEDV 116 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + ++ R + LA +LT RE E L +++G I Sbjct: 117 VSAARHALVSPRSFSAADLAGAMRRRMNPSGP------QLTPREREVLQLMADGLGVSAI 170 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS +T +++ + K R+ A+ A+R ++ Sbjct: 171 ARQLFISESTTKTHVSKLYEKLGAANRAQALMAAIRLGLL 210 >gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 241 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L RE ECL W + GK S +IA IL +S TV +Y+ + +K +T S A+A A R I Sbjct: 179 LAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRI 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|308176449|ref|YP_003915855.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307743912|emb|CBT74884.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 432 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D ++ L GRE E L ++ G+ + I+ LGIS NTV ++ ++ +K +R Sbjct: 357 PPSDAADIAEWSLGGREFEVLQLLAAGQRNRAISQALGISENTVKFHVRNLFKKMGVGSR 416 Query: 234 SGAIAYAVRNNI 245 + A+A A + + Sbjct: 417 AQAVALAHSHGV 428 >gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] Length = 219 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 7/173 (4%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + + + Q + E + + M Sbjct: 42 LVEQLRPDLVLLDLDMPVMNGREALGQILSSNPEQKVVMLTVSEDGDELIECMKQGAHGF 101 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192 + + G+ + D ++ + A ++ LT RE E Sbjct: 102 LL---KNINADFFIEAVGKALNGDNVFSPEMTAHLVKSLISPIQPQSDAHIGTLTPRERE 158 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++ G ++ IA L ++ +TV Y+ SI+RK +R A YA++++I Sbjct: 159 TLHHLAIGHSNKVIAKKLNLAESTVKAYVQSILRKLGLSSRVQAAVYAIQHDI 211 >gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G + EIA LGI+ TV + IM+K + AYA+R + Sbjct: 148 LTAREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGL 207 Query: 246 V 246 + Sbjct: 208 I 208 >gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 13/170 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + D + E + F T + + + + Sbjct: 49 PDVVLMDIRMPGMDGIEATRRVLAERPATRVIILTTFDTDEHVFEALRAGASGFLTKEVE 108 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A +R + ++ ++ + + + + +H LT RE E + Sbjct: 109 PAELRRAVEIVAAGDSLLSPGVTRRV--IERFAHRPRPAAALHA-----LTARENEVVRL 161 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG+++DEIA L IS T +I+ + K + R + A + +V Sbjct: 162 VAEGRSNDEIAAALVISPLTAKTHISRAITKLGLRDRVQLVITAYEHGLV 211 >gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 210 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA A+ D LT RE+E L + EG ++ +I+ L +S+ TV +++ Sbjct: 127 SALAPAVAHRLM--DRMRTPAQALTKRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLV 184 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+A A ++ Sbjct: 185 HIYAKLGVDSRTSAVAAATARRLI 208 >gi|196234323|ref|ZP_03133152.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196221590|gb|EDY16131.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 6/183 (3%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----PENITPP 123 L E ++ + ++ F V L D ++ P + T+ P+ Sbjct: 26 LSAEPDIEIVAEANNGFQAVEMFVLHRPDLVLMDVRLPLQDGVQAARTIRNDHPQARIAM 85 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + + + +G + + +L + + Y A ++ + Sbjct: 86 LTVSDAEEDILGAIDAGVVGYLPKSVEREQLLT-AIHRLAEGGEYFAPEIEAK-LRSTNR 143 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E LT I +G+++ EI LGI+ TV ++ + +K R+ A AV+ Sbjct: 144 VSLTKRETEVLTQIVKGRSNKEIGYDLGIAEPTVRLHLTHLFKKLHVMDRTQAAMVAVQR 203 Query: 244 NIV 246 +V Sbjct: 204 GLV 206 >gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 244 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 18/212 (8%) Query: 47 MRMYALTEYVGASHFLLVRWDLFQ-------EQKLDSIVSSDWPFDLVRCMALSEKDKYY 99 + AL G L + E +V+S +R E Sbjct: 35 QGLRALAHEHGFYSALYLHIGHAACGRAAAPEGPPSRLVASSPIA--LRQYG--EALTGS 90 Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--- 156 ++ +R P T + P G+ R+ L V G L+ G+ + R Sbjct: 91 SIARRAAGSHRPFAWTNTDEDMP--GLSGRHVGLAIPVQDHAAGPGLVALIGQDLDRVRR 148 Query: 157 --DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 AA + + V LT RE+ECL + + G+T + LGI+ Sbjct: 149 LAREEAAALAFAAAELHQSILASVRPAATAALTAREIECLRFAAVGRTVADTGQALGITS 208 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ ++ K + A+A AV +V Sbjct: 209 RTVEFHLKNVAEKLDATNKVHAVAIAVSQGLV 240 >gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 217 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 6/143 (4%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTF--DVARIRIGLMLLFPKGRIILRDRLWEI 162 P E+ V + + ++ +R+ + + L G + L L E Sbjct: 74 PGEVPVVVLSAADDRRSVLQAVEIGAAGFIPKTSSSRVMLSALKLVLSGGVYLPPALIER 133 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 S V LT R+ E L + EGK++ EIA IL ++ TV ++ Sbjct: 134 STPRGEGL----SPAVVEQAMSILTPRQREVLGLLGEGKSNKEIARILELAEGTVKLHVT 189 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +I++ R+ A+ A + + Sbjct: 190 AILKALNVNNRTRAVVAAAQMGL 212 >gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 237 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 9/141 (6%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + +F I + Y + +++ + + +I LA Sbjct: 100 IILTMFAEDGHVIRAIRAGADAYLLKNSESSKVIDAIRAVARGESVIEP-------QLAT 152 Query: 168 YQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 N F+ ++ LT RE++ L ++ G ++ EIA L ++ +TV N ++ + Sbjct: 153 KLLNEFRRISEFREEETVAGLTEREIQLLRLVASGMSNKEIAAELSLAESTVKNRLSLLF 212 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K K R+ A YA+ + ++ Sbjct: 213 EKLDVKDRTQAAIYALSHGLI 233 >gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1] gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1] Length = 146 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + L+ RE E L ++EG ++ EIA +L +S +T+ +++++ K K R+ AI A Sbjct: 80 ETLGLSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKAK 139 Query: 242 RNNIV 246 + I+ Sbjct: 140 QLQIL 144 >gi|83749981|ref|ZP_00946930.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551] gi|83723351|gb|EAP70580.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551] Length = 263 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +D IV+ D+P + + + +++R PV+ + P A +D + + Sbjct: 63 LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPVAEIDRGWLA 119 Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171 L VA L L L ++ L A+ Sbjct: 120 KFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTPVLHRTLMRAVAD 179 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K++ L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT Sbjct: 180 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 239 Query: 232 TRSGAIAYA 240 R G A Sbjct: 240 NRVGVAVLA 248 >gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 228 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 11/162 (6%) Query: 89 CMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRI 142 +A+ + D R P+ + I N Y T D+++IR Sbjct: 61 DIAMPQLDGIDTTKAIRERGDTTPIMLLTSYDVEERFIQGMQAGANGYLIKTSDISQIRA 120 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 ++ + + D + A +A D+ + LT RE LT + G++ Sbjct: 121 AILSIASGTAVFSPDAAGFSRAVVANEAPGQTPADL-----YGLTEREEAILTQLCRGQS 175 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + EIA LGIS TV +I SIM+K ++R + A + Sbjct: 176 NYEIARFLGISEGTVKVHITSIMKKANVRSRLELVVQAFNSG 217 >gi|257482053|ref|ZP_05636094.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 687 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 17/178 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135 D ++ ++ + + + + E+ P+ + + I R SL Sbjct: 510 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 569 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188 I L + L ++L ++ LL A+ + + G D L+ Sbjct: 570 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVRDALLEELPASCTPTLEPAHGSDC-LSV 628 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 629 RELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 686 >gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 214 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 1/141 (0%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 E + PE + G M L R LRD + + Sbjct: 73 LEALRGILSEWPEARIVILTTYRGDAQAMSALKSGARGFM-LKGMMRKELRDTIRAVHAG 131 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +L+ RE+E L ++ G + EIA L ++ TV ++ I+ Sbjct: 132 RRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRIL 191 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K K R+ A+ A++ I+ Sbjct: 192 SKLGAKDRTHAVLLALKRGIL 212 >gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae L20] gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 209 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 18/132 (13%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + + D+ L ++ + G +L R L DR E L+ Sbjct: 93 VFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVLSDSVRQHLLDRRPENDPLSV---- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE + L WI+ G ++ +IA L IS TV +I +++RK Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVH 194 Query: 232 TRSGAIAYAVRN 243 +R A + Sbjct: 195 SRVAATVLYLEQ 206 >gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 202 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 ++V + + ++ D FD+V +P L + Sbjct: 1 MIVDDHPLMRRGIKQLLELDSNFDVVAEANCGSDATIEAAKCQPDVILLDLNMKGMSGLD 60 Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANM 172 T A G+D R LT AR + M+ +L+D EI L LA+ N+ Sbjct: 61 TLKALRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENV 120 Query: 173 FK--------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 F S D ELT RE++ L ++ G ++ ++A L IS TV +I ++ Sbjct: 121 FSDAVTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 180 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK ++R A + N Sbjct: 181 LRKLNVRSRVAATIMYLENK 200 >gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC 27126] Length = 214 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + LT +EVE L I+ G ++ EIA + S T+ N ++SIM K + R+ A+ Sbjct: 148 FENPEPLTEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKLGVRDRTRAVLK 207 Query: 240 AVRNNIV 246 A+ ++ Sbjct: 208 ALEQGVI 214 >gi|261365900|ref|ZP_05978783.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] gi|288565546|gb|EFC87106.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] Length = 220 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 80/218 (36%), Gaps = 16/218 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R+ +D + + AL ++ +V + + +D P ++ + + Sbjct: 8 RIALIDDHTLFRSGIKALLTR--QDNYEVVGEAADGLSGVKLVEQTD-PDVVLLDLDMPV 64 Query: 95 KDKYYNVLQ----RPTEL--FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + + Q RP ++ V + + + + Sbjct: 65 MNGREALAQILSSRPEQVVVMLTVSEDCEDLTECMRLGARGFLLKNIHADFLVDAIRKAA 124 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207 + + + A ++ + + + LT RE+E L +++ G ++ IA Sbjct: 125 EGDNVFSPE------MTARLVQSLIQPNTPPATRALDALTTRELEILGYLAAGHSNKIIA 178 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++ +T+ ++ SI+RK +R A YAV++N+ Sbjct: 179 RKLNLAESTIKVHVQSILRKLELSSRVQAAVYAVQHNV 216 >gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 8/142 (5%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L VF + Y + I G+ G + Sbjct: 79 CRVLMLTVFEDAAKITQAICNGAQGYLLKNSSIEEIISGIQQSLKGGVPMTP-------- 130 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A+Q S D+ L+ RE E L + +G EIA L +S +TV+ Y+ + Sbjct: 131 CIAHQVLELFSRFAPRHADYGLSTRERETLELMVQGFIRKEIADRLNLSLHTVDTYLRGV 190 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 RK TR+GA+A A++ +V Sbjct: 191 YRKLEVNTRTGAVAKALKEGLV 212 >gi|17232908|ref|NP_489446.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134898|dbj|BAB77454.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 237 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + + LT RE++ L I +G ++ IA L +S TV ++ +I+ K R+ Sbjct: 168 SHIVETYPLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIA 227 Query: 238 AYAVRNNIV 246 A+R +V Sbjct: 228 VRALRAGLV 236 >gi|254000165|ref|YP_003052228.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986844|gb|ACT51701.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 232 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 7/169 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + K + L + + V + + + Y Sbjct: 71 DVVLIDLNMKGLNGIETLRRFKTESSL-QARFVVLTVSDAEDDLLEALRAGADGYLLKDM 129 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + G +++D L E+ A + K+ D D LT RE E L Sbjct: 130 EPEDL-CASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADD-----DVALTDREQEILQ 183 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +++G + IA LGIS TV +I ++ K +R A +A R Sbjct: 184 CLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRKK 232 >gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E LT ++EGK++ +IA IL IS TV ++ ASIM++ +T + I YA+R+ Sbjct: 154 LSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKYAIRHG 212 >gi|170723583|ref|YP_001751271.1| ATP-dependent transcriptional regulator LuxR [Pseudomonas putida W619] gi|169761586|gb|ACA74902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida W619] Length = 905 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--------YQAN 171 + G L +A + G+M F + + L E LLA A Sbjct: 771 LLEQGGEAQAAERLPMALAAAQGGVMQPFQRLIELHPLWLRE-QLLARPACKVQVELLAR 829 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + G L+GRE+ L I++G ++ +I+ L IS +TV + + I K + Sbjct: 830 LPELAAPGSGTCESLSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVE 889 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+A A ++ Sbjct: 890 RRTQAVARAKSLGLL 904 >gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 207 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 12/187 (6%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 + QE + P ++ + + E + + PT +F T + Sbjct: 30 VATASNGQEALEKLAALTRQPDLILVDLQMPEMSGKKLLEELPTLSNVLIFSTEIDGELA 89 Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 + Y D I + L I + L A++Q + Sbjct: 90 QHFIQKGVRGYLLKDEDPTDIVNHIQKLLADDSYI---AISSEVLTASFQHRQNEENVPT 146 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +T ++ + L +++G T+ EIA L ++ TV Y+ + R+ AIAY Sbjct: 147 ------ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAY 200 Query: 240 AVRNNIV 246 A+R+N++ Sbjct: 201 AIRHNLI 207 >gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 235 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 7/159 (4%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 M + D+ Y + E+ C H L T + D ++ VAR + + Sbjct: 84 STMPVLWTDELYKEAPQFREMAC--LHGLRHGWT-QSLHDQQHNESQISVARPNGPIDEV 140 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + L L A + + +++ RE+E L W + GKT+ ++A Sbjct: 141 ELYDKAGSVQWLCH-ALHAVLGEHHLNAL---CPPQPKMSERELEVLKWSAAGKTAADVA 196 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IL +S++TVN +I S++ KT ++GAIA A + Sbjct: 197 SILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%) Query: 87 VRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRI 142 VR L+ ++ P V T + + + + Sbjct: 73 VRMPELNGIRATERIVAGPGRPPKVLVVTTFENDAYVYDALRAGAAGFLLKRVAADELIQ 132 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + L+ ++ + LAA + W + +LT RE + L ++ G T Sbjct: 133 AVRLMARSDSLLFPAAVRS---LAAEHGARRTAPVPPWAR--KLTEREADTLRLMAAGLT 187 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA +G+ TV +++A+++ KT + R+ A+ A + + Sbjct: 188 NGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 231 >gi|219850206|ref|YP_002464639.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544465|gb|ACL26203.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 73/219 (33%), Gaps = 20/219 (9%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-------SIVSSDWPFDLVR 88 ++ D + + + E G F +V ++ + D ++ Sbjct: 7 ILIADDHTMFRQGLREILERKG--GFQVVAEVRDGAAAVEAAKTTKPDVALLDVSMPVMT 64 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147 + + + + R H + + N Y D + + + ++ Sbjct: 65 GIEAARQIGQVSPHTRCV---VLTMHRDEQTVLEALRAGANAYLLKDADASELIEAIHVV 121 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + + + ++ + D LT RE + L +++G + IA Sbjct: 122 YRGEAALAGSAAARV-------LDLLRRNDNAPALHEVLTPRERDILALVAQGDDNRAIA 174 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L ++ TV N ++ I +K R+ A AV+ +V Sbjct: 175 LKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213 >gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family [Syntrophobacter fumaroxidans MPOB] Length = 218 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 8/176 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVF--HTLPENITPPAGMDNRY 130 + S P ++ +++ + + + + T V H E I Sbjct: 44 RLAESLKPDLMLMDLSMPRMNGMGAIQEIKKQCTATKILVLTVHKSEEYILATLKAGADG 103 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L + + G+ L + E + + W LT RE Sbjct: 104 YVLKDATHSELMLAIECVFSGKSYLSPSISEKVIEGYLEGRKTIKSSTSWDT---LTQRE 160 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+EG + +IA L IS TV + A++M+K + S A+A+ ++ Sbjct: 161 KEILKMIAEGYKNKDIADYLCISAKTVEKHRANLMKKLDLHSASSLTAFAMEKGLI 216 >gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 47/134 (35%), Gaps = 14/134 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + R + V I G + P +A + Sbjct: 93 VFAAMRAGARGYLLKGARNEQIIRAVRVIGDGEAIFSP--------------AIATRVLS 138 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE E L ++ G + IA L +S+ TV N+++ I RK Sbjct: 139 LLGTATPRDESFPRLTLREQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVT 198 Query: 232 TRSGAIAYAVRNNI 245 RS AIA A I Sbjct: 199 DRSQAIAKAKEAGI 212 >gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 4/118 (3%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + + + + + +I L+A + + + LT Sbjct: 102 GFLVKDTEPEELIHAVRVAHRGDALISPSVTRR--LIAEFAGRVQAPEPGPRLR--ALTD 157 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E + ++ G T+DEIA L +S T +++ IM K + RS + A + +V Sbjct: 158 REREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYESGMV 215 >gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010] gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010] Length = 212 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 10/170 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 EQ +V D + + + K ++L R + V + + + + Y Sbjct: 47 EQTQPDLVLLDLNMRGMDGLETLRRFKQTDLLTR--YVILTVSDSEDDLMEALKIGADGY 104 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGR 189 + +R LM G +L+D L ++ D + D LT R Sbjct: 105 LLKDMEPEDLRANLMKASV-GVTVLQDSLTQV------LKKALSEPDTKVNQADAGLTDR 157 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 E E L ++EG + IA LGIS TV +I +I+RK +R A + Sbjct: 158 ENEILDCLAEGMNNKNIARKLGISDTTVKVHIKNILRKLNLTSRLEAAVW 207 >gi|71905906|ref|YP_283493.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71845527|gb|AAZ45023.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 221 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 12/220 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR-CMA 91 + +++ ++ + L + A +L D + +++ ++ FDLV +A Sbjct: 1 MLKLLVVEDHALVREGLVRLLGQIEAGAKVLESADF---ESALNVLENEGEFDLVLLDLA 57 Query: 92 LSEKDKYYNV-LQRPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L D + + + R PV F P + + F + + Sbjct: 58 LPGIDGFAGLDILRRRYPAMPVAVVSAFDDTPTITRVLNLGASGFIPKAFSGEALLSAVR 117 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + I R L + + LT R+ + L + G ++ + Sbjct: 118 EVLAGN--IFRPNGQSAARLDDATPVPPPPKNGVRPDEIGLTDRQGQVLALMVRGLSNRD 175 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA LG+S TV + ++ + +R+ A+ R I Sbjct: 176 IADQLGLSEGTVKIHATAVFKALGVSSRTQALVAVARYGI 215 >gi|78049092|ref|YP_365267.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037522|emb|CAJ25267.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 923 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 42/78 (53%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 QA + + D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK Sbjct: 832 QALLERLSGDDDPADDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKL 891 Query: 229 ATKTRSGAIAYAVRNNIV 246 ++R A+A A++ ++ Sbjct: 892 DARSRESALAQALQRGLL 909 >gi|311899330|dbj|BAJ31738.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L F + + D A + + L+ ++ L+ Sbjct: 82 LILTTFENDEYVAEALRAGASGFLGKGIDPAELLDAVRLVAAGDALLSPAATK--ALIGR 139 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + A + LT RE + + ++ G ++D+IA L ++ T ++ M K Sbjct: 140 FLAQPDPVRRAALPRLDVLTAREQQVVALVAAGLSNDDIAERLFVTPLTAKTHVNRAMTK 199 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R+ + A +V Sbjct: 200 LGARDRAQLVVIAYETGLV 218 >gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4] Length = 218 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 10/150 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--------D 157 E + P+ + + V G ++ ++ D Sbjct: 66 VEATREITTAAPDTRVLVLSASGEHSDVLEAVKAGASGYLVKSASAAELVDAVRRTADGD 125 Query: 158 RLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 ++ GL + D G + LT RE + L +++G T+ +IA L +S Sbjct: 126 PVFTAGLAGLVLGEYRRMADAPDGAPEPPRLTDRETDVLRLVAKGLTARQIAERLVLSHR 185 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV N++ S +RK R YA+ + + Sbjct: 186 TVENHVQSTLRKLQLHNRVELARYAIEHGL 215 >gi|320537182|ref|ZP_08037151.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320145970|gb|EFW37617.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 217 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 6/171 (3%) Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDV 137 D F +R + D + ++ + + T + + N Y Sbjct: 48 DLIFLDIRMPNYNGVDATKKIKEQYPNIKILMLTTFTDIDYIQQALKNGASGYLLKDSAP 107 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLT 195 I G+ +I + + + LL + K+ + ++ELT +E+E + Sbjct: 108 DVIYDGIKAALSGNVVINPE-IAQNILLGKAEKREPKTEEEITTLANEYELTQKEIEIIK 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG ++ EIA +S T+ N I+ I KT R+ +A +N IV Sbjct: 167 LVAEGFSNKEIAHKQQLSEGTIKNNISVIFSKTFVADRTQLALFAFKNGIV 217 >gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 18/133 (13%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 TL + D L V + G+ + P+ R+ Sbjct: 96 ATLDAGVDGCLLKDAGATDLVSAVHQAAHGIPIFDPRVGERAAPRMRS------------ 143 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT RE + L + G+T+ EIA LG++R+TV Y+ + MRK + R Sbjct: 144 ------RLHDTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNR 197 Query: 234 SGAIAYAVRNNIV 246 IA A ++ ++ Sbjct: 198 IELIAKAAQSGLL 210 >gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 243 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 167 AYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A+ + Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + Sbjct: 160 AHLIHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTA 219 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K T S A + AV+ I+ Sbjct: 220 RFKLGCATISAAASRAVQLRII 241 >gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein [gamma proteobacterium IMCC2047] Length = 151 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 L + + + +R++L I Y A+ F + LT R Sbjct: 30 APGLLATIVESGVEGLFSKGSPVDQMREKLPLISQGGRYVASEFLELIQQGQQVSALTDR 89 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E++ L I GK + EIA L IS TV+ + S+M K + + +A A+++ ++ Sbjct: 90 ELQVLNMIVAGKINKEIAEALFISPKTVDKHRTSLMSKLEVHSVAQLLARALKDGLI 146 >gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 273 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 17/163 (10%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D R + + V+ + VF + R+ + + + G Sbjct: 124 DATRQIVSNSPQIRVLVVTMFEDDHL-VFAAMRAGARGYLLKGVRHEDMVRAIRAVGSGD 182 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202 + P +A + F + EL+ RE + L +++G Sbjct: 183 AIFSP--------------AIATRLVSYFSALQPEHPSQIFPELSHRERDILALLAQGCK 228 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L +S TV NY+++I+ K R+ AI A + Sbjct: 229 NAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAILRAKDAGL 271 >gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 15/222 (6%) Query: 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90 +L R+ D + + + L Y ++ W E D V P L+ + Sbjct: 4 ELPIRVAIADDNAEYRLTLADLLAY-EPDIEVVAVWANGHEVLRD--VEQVRPDVLLLDI 60 Query: 91 ALSEKDK-----YYNVLQRPTELFCPVFHTL-PENITPPAGMDNRYCSLTFDVARIRIGL 144 + E D +L ++ H P + + Y + + + Sbjct: 61 TMPEVDGLCVLKAVPLLAWRPKIVVLTMHEQSPVVLEAVRAGVSGYIVKDAPMEDLLRAI 120 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + ++ A + + G LT RE + L ++ GK+++ Sbjct: 121 REAHEGR------AMVHPQVMRAVLGEIERYAKPSDGWKDLLTAREFDVLCQMAAGKSNE 174 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L I+ T N+++ I+ K RS A+ +A R + Sbjct: 175 QIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAYRERWI 216 >gi|66044947|ref|YP_234788.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255654|gb|AAY36750.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 238 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%) Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 G + + L F G L + + ++R+ + L + +S + Sbjct: 119 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDE- 174 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ A Sbjct: 175 ----NFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 230 Query: 239 YAVRNNIV 246 + I+ Sbjct: 231 QLTKMGIL 238 >gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 221 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 4/158 (2%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 +A +E+ L + F + + + + G+ ++ Sbjct: 62 GLAAAERILADPRLSSTRVVILTTFDLDEYIFEALRLGASGFLVKDTEPEDLINGVRVVA 121 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 ++ + +A Y + +D LT RE E + + EG +++EIA Sbjct: 122 RGEALLSPSVTRRV--IAEYAGRPRRPAPDRRLRD--LTDREREVVALVGEGLSNEEIAA 177 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S TV +++ M K + R+ + A +V Sbjct: 178 RLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETGLV 215 >gi|300780243|ref|ZP_07090099.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300534353|gb|EFK55412.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 212 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE+E L ++ G ++ EI L +S TV +++ I K ++R+ A+A Sbjct: 145 DRTPRSSLTPRELEVLQLVAGGSSNREIGQRLMLSEATVKSHLVHIYDKLGVRSRTSAVA 204 Query: 239 YAVRNNIV 246 A ++ Sbjct: 205 SAREQGVL 212 >gi|271968535|ref|YP_003342731.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511710|gb|ACZ89988.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 4/163 (2%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGL 144 VR + +++ + + T + AG+ L + + Sbjct: 56 VRMPGTDGIEATGRIVRTCRQTRVLILTTFDLDEYAFAGLKAGASGFLLKNALPEELLAA 115 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 + G + R+ LL + + + + LT RE E L ++ G ++ Sbjct: 116 IRNVAAGDAAVSPRITRR-LLENFAHQLPTGGAPASAERLQRLTPREREVLIEVARGLSN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ TV ++ I+ K + R A+ +A ++ Sbjct: 175 TEIAAGLHLAEATVKTHLGRILLKLELRDRVQAVVFAYEARLI 217 >gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] Length = 207 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 21/217 (9%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + E + F ++ E+ L I P ++ + + + Sbjct: 1 MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57 Query: 98 -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + + P+ N + Y D + +G Sbjct: 58 ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVI 209 I+L+ + E + +K +VH K + LT +E+ L I+ G + EIA Sbjct: 116 EILLQPNIMEKIV-------KYKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFD 168 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GI+ TV ++ +I K +RS A+A ++ ++ Sbjct: 169 MGIAERTVKAHLTNIYNKLGVNSRSEAVAVSIERKLI 205 >gi|50842410|ref|YP_055637.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50840012|gb|AAT82679.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315105495|gb|EFT77471.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 218 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 16/136 (11%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQA 170 F L + + SL + ++ G LL P+ R+I R Sbjct: 89 FDALDAGASGFMLKNAEAESLVAGLRQVADGHALLAPEVTRRVIAR-------------- 134 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ + V K +LT RE+E ++ G ++ EIA L +S TV ++++ + K Sbjct: 135 SVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDL 194 Query: 231 KTRSGAIAYAVRNNIV 246 + R +A A + ++ Sbjct: 195 RDRVQLVALAYESGLI 210 >gi|330973646|gb|EGH73712.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 237 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%) Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 G + + L F G L + + ++R+ + L + +S + Sbjct: 118 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDE- 173 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ A Sbjct: 174 ----NFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 229 Query: 239 YAVRNNIV 246 + I+ Sbjct: 230 QLTKMGIL 237 >gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia enterocolitica W22703] Length = 236 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174 G+D R LT AR + M+ +L+D EI L LA+ N+F Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162 Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222 Query: 233 RSGAIAYAVRNN 244 R A + N Sbjct: 223 RVAATIMYLENK 234 >gi|303238745|ref|ZP_07325277.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593624|gb|EFL63340.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 6/158 (3%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFP 149 + + + + + + T + + N Y + + + + Sbjct: 61 NGVEGTKLIKSKFQSIKVIILTTFNDEENISKAIKNGADGYVLKDIKPDDLIVAVKSVAK 120 Query: 150 KGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 I+ L + + + + + + D LT RE+ + I +GK++ EIA+ Sbjct: 121 GFSIMHHTALNTVAKQINHDKEPTQRKQEPKF--DINLTDRELSIIKLIVDGKSNKEIAL 178 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + I+ +V N I +I+ K K R+ +AV+NNIV Sbjct: 179 SIFITEGSVKNIITNILEKLNLKDRTQLAVFAVKNNIV 216 >gi|289679330|ref|ZP_06500220.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] gi|330901245|gb|EGH32664.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 237 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%) Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 G + + L F G L + + ++R+ + L + +S + Sbjct: 118 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDE- 173 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ A Sbjct: 174 ----NFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 229 Query: 239 YAVRNNIV 246 + I+ Sbjct: 230 QLTKMGIL 237 >gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1] gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1] Length = 220 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + ++ + ++ ++ + + + ++ + +LT Sbjct: 100 GFLLKDASADQLAEAVRVIAAGDALLAPGITRRLIAEFSRLDDRPRAP--LRQRIEDLTE 157 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E + I+ G ++ EIA L ++ TV ++ I+ K + R+ A +A + +V Sbjct: 158 RETEVVALIAHGLSNAEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 215 >gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] Length = 64 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L I+ G ++ EIA L IS TV ++A I+ K + R A+ +A N+ Sbjct: 3 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 62 Query: 245 IV 246 +V Sbjct: 63 LV 64 >gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 247 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 25/198 (12%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 + + ++ S++P ++ S +++ P F E G++ Sbjct: 52 RTVKPVILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFF--WREARHAIQGVETDDF 109 Query: 132 SLTFDVARIRIGLMLLFPKGRII------------------LRDRLWEIGL-LAAYQANM 172 ++ G + +RD+ +I + L + + Sbjct: 110 LKRSAKYQLSSGATFTLHDASGLFAALSLCNARQQTDFDQRIRDKAADIQMSLIRFHDRL 169 Query: 173 FKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 ++ H +L+ RE+ L W++ GK EIA I IS TV +++++ K Sbjct: 170 TRTQAPHELFPQPTRCKLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKL 229 Query: 229 ATKTRSGAIAYAVRNNIV 246 +T A+ A+ +V Sbjct: 230 EVRTAKQAVYKAINMGMV 247 >gi|330504873|ref|YP_004381742.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328919158|gb|AEB59989.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 913 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ++R+ L + L A Q S H +L+GRE+ L I+ G ++ EI+ L IS Sbjct: 822 LIREAL--LAQLPAQQHVDESSEIEHEPLTEKLSGRELAVLQLIARGCSNQEISERLFIS 879 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + I K + R+ A+A A ++ Sbjct: 880 LHTVKTHARHINSKLGVERRTQAVARAKGLGLL 912 >gi|256374750|ref|YP_003098410.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919053|gb|ACU34564.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 14/209 (6%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + G ++ D + + P ++ + + D L+R Sbjct: 13 VRSGLRLILSSAG-DIDVVAECD--DGHLVAELARQHRPHVVLLDIRMRTSDGLV-ALRR 68 Query: 105 PTELFCP-------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157 L P F + + + ++ + L G ++ Sbjct: 69 LRALPDPPKVAMLTTFDVDEYVSEALRLGASGFLLKDTEPEQLVKAVRDLARGGAVLDPG 128 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 + + A+ ++ + L+ RE E L I +G ++ EI L +S TV Sbjct: 129 V---AARVLSAVADGERAAEPARRLLSSLSEREREVLVLIGQGMSNAEIGGTLHLSEATV 185 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 Y++S++ K R A A R ++ Sbjct: 186 KGYVSSVLGKIGAVNRVQAALVAYRGGLI 214 >gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 230 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 53/172 (30%), Gaps = 18/172 (10%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 ++ SD PF + L +R + P L P G Sbjct: 75 RHVLDSDAPFFWSKRQGLRG--------ERYQVVKQPRGEGLHGLQVPVFGTTG------ 120 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 I R +L A A L+ RE E L Sbjct: 121 ---LEGAISFAGTSIDASASARLQLEAAATAAFRAARRLAEVPAALSGSL-LSTREREVL 176 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W++ G+ EIA LG+S TV N++ ++ T + A+ A R + Sbjct: 177 RWVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRGEI 228 >gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 272 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 150 KGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEI 206 + + +L LLA A+QA + D + LT RE ECL + ++G T+ I Sbjct: 171 EAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGMTAKSI 230 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L S TVN ++ S RK + R A+ + ++ Sbjct: 231 AATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 270 >gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 9/170 (5%) Query: 83 PFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFD 136 P ++ + ++ + ++++ +F ++ ++ A N Y Sbjct: 50 PDVVLMDIGMAGMSSFEATRLIRKERPEVKVIFLSMYDDEDYLAECVDMGANGYILKDSP 109 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 ++ + + G + + L + + LT RE E L Sbjct: 110 ADQLITAIREVQRGGSYLSP---RLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKM 166 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EGK+ EIA +S TV + ++MRK ++ + YA++ I+ Sbjct: 167 LAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQYAIQKKII 216 >gi|294788302|ref|ZP_06753545.1| nitrate/nitrite response regulator protein NarL [Simonsiella muelleri ATCC 29453] gi|294483733|gb|EFG31417.1| nitrate/nitrite response regulator protein NarL [Simonsiella muelleri ATCC 29453] Length = 220 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209 R + D ++ + A ++ + ++ G + LT RE+E L ++ G ++ IA Sbjct: 119 KRAVDGDNVFSPEMTARLVQSLIRPHNAGTGSALDTLTPRELEILGHLAAGHSNKIIARQ 178 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++ T+ ++ +I+RK +R A YAV++ + Sbjct: 179 LDLAEFTIKVHVQNILRKLELSSRVQAAVYAVQHKV 214 >gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 7/161 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + L F + + ++ + + Sbjct: 63 GIEATRRIVTAGAAARVLILTTFDLDEYAFAGLRAGASGFLLKDVPPEQLTAAIRAVAGG 122 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDE 205 ++ LL + ++ ELT RE E L ++ G+T+ E Sbjct: 123 DAVVAPRVTR--ALLDTFAHHLPADAAAPVPPHEHPRLSELTAREHEVLLELAAGRTNAE 180 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S TV ++ I+ K A + R A+ A + +V Sbjct: 181 IAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIGLV 221 >gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] Length = 206 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 12/199 (6%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--- 107 AL + AS + V + + + P L+ + + E + E Sbjct: 15 ALKTILEASGDITVSATGTDGKDAVRLFRTYRPDVLLMDIRMKELSGLDASAEILKEFPD 74 Query: 108 --LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 + + E I + + L D + L + + + + +I L Sbjct: 75 AKILLLTTFSDDEYIVRALKLGAKGYLLKQDYESLIPALHAVHSGQTVFGNEIISKIPEL 134 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 ++ +D++++ RE+E + I++G ++ EIA L +S TV NY++SI+ Sbjct: 135 -------LQTGPTFHLEDYDISERELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSIL 187 Query: 226 RKTATKTRSGAIAYAVRNN 244 K + R+ + R+ Sbjct: 188 DKLDLRDRTQVAVFYYRHK 206 >gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K LT RE+E L I GK++ EIA L +S NTV+ + A+IM + + YA Sbjct: 140 NKSMGLTNRELEILQLIVSGKSNKEIASDLSLSVNTVSVHRANIMEGLGIHNTAELVVYA 199 Query: 241 VRNNIV 246 ++N +V Sbjct: 200 IKNGLV 205 >gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 205 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D K+ L+ RE E ++ I +G ++++IA +S NTV Y+ S RK T Sbjct: 129 IMGPDKWPAKEAGLSHREAEVVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVAT 188 Query: 233 RSGAIAYAVRNNI 245 R+ A+A+ + N + Sbjct: 189 RAQAVAWGIGNGL 201 >gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 209 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174 G+D R LT AR + M+ +L+D EI L LA+ N+F Sbjct: 76 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 135 Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 136 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195 Query: 233 RSGAIAYAVRNN 244 R A + N Sbjct: 196 RVAATIMYLENK 207 >gi|294509070|ref|YP_003565959.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM B1551] gi|294352374|gb|ADE72696.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM B1551] Length = 202 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 9/194 (4%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 LLV L + ++ S+ +++ ++ P + V I Sbjct: 6 LLVDDHLLVMLGIRRLLESEEDIEIIDTVSDPSSLIEVVATTSPDVVVTDVRMKEFNGIE 65 Query: 122 PPAGMDNRYCSLTFDV-----ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM---F 173 + +++ + + I ++R A Q+NM Sbjct: 66 LTKELLSKFPEIKVVILSGYDHEEYYNAAFKAGASAYITKERSAFDLANAIRQSNMGYIL 125 Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S + KDFE LT E + L IS+ KT+ EI++ L IS+ TV +I+SI+RK + Sbjct: 126 FSKNQISTKDFETLTSAEQKILLLISKDKTNYEISMDLSISKRTVEYHISSIIRKLDVDS 185 Query: 233 RSGAIAYAVRNNIV 246 R GA+ ++ ++ Sbjct: 186 RVGAVVKGIKKGLI 199 >gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 212 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 12/119 (10%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + + + + + + + I D ++ A A+ + LT Sbjct: 94 DGFVTKRQHIGEVLAAVTAVLRGDTPISPD------MVGALIASRPRPPGGD------LT 141 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E L + G+++ + A LGIS +TV N++ I+ K ++ A+A A R ++ Sbjct: 142 PRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQLEAVAIASRLGLL 200 >gi|226357726|ref|YP_002787465.1| transcriptional regulator, LuxR family, sensory transduction protein liaR [Deinococcus deserti VCD115] gi|226319968|gb|ACO47961.1| putative transcriptional regulator, LuxR family, putative sensory transduction protein liaR [Deinococcus deserti VCD115] Length = 210 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L A+ G EL+ RE+E L I++G + EI + L IS ++V ++ Sbjct: 127 AFLDPQVAHHVLGAMRTPGVPVELSARELEVLRLIADGLGNREIGMQLEISVSSVKLHVQ 186 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ K R+ A A+R ++ Sbjct: 187 DLLEKLQASDRTQAAVKALRQGLL 210 >gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISE 199 + + + + +L LLA A+QA + D + LT RE ECL + ++ Sbjct: 146 AVNVTQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAK 205 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G T+ IA L S TVN ++ S RK + R A+ + ++ Sbjct: 206 GMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252 >gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5] gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5] Length = 239 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 86/234 (36%), Gaps = 23/234 (9%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 +L+ + + E G R+ + ++ V + +P + R Sbjct: 12 DNLIDALELARDQRMIKQALRHFCESNGFD-----RFAHLNVRSTETCVLTTYPAEWQRL 66 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC------------SLTFDV 137 +K + + + +F ++ + + R+ S+ Sbjct: 67 Y-FDKKYALIDPVVISAKRNMEIFSWSQDDASKYSKDVKRFFREADDFGIRSGLSIPIRT 125 Query: 138 ARIRIGLMLLFPKGRII----LRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVE 192 ++ L + R + ++D + + +A A++ + + +ELT REV Sbjct: 126 PFGGTAILTLASEQRRVDFAGIQDTVRAMNAVAFAHAHLNRVAAAPCRRTKYELTPREVT 185 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 CLTW S GKT EIA +L I TV NY+ K + A+ AV +++ Sbjct: 186 CLTWASLGKTMSEIADLLQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQHLI 239 >gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2] gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2] Length = 592 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + E T + D L R++ +D + L + + Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V Q +D + P ++ + + D + Q+ + +F T Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETPQSKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQMALEIGII 591 >gi|218886123|ref|YP_002435444.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757077|gb|ACL07976.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 216 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 9/174 (5%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRYC 131 IV P ++ + L D + + T++ H I Sbjct: 43 IVEKHMPDIVLMDLTLPLMDGTEAIREIKRRCERTKVLALTAHKKDSLIYRTLSAGADGY 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 L + I + M GR + + E+ L+ + + + L+ RE Sbjct: 103 VLKNVSSDILVQAMETVLSGRRYISPEISEL-LIEDFLRHGRRESGSLLDL---LSDREK 158 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L ++EG + IA L IS TV + A++ RK + + +++A+ + + Sbjct: 159 QVLKLVAEGHGNKMIADKLCISHKTVEKHKANLKRKLGADSTAELVSFAIEHGL 212 >gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 96 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 41/61 (67%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+GRE+E L ++ G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 12 LSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWALQWGK 71 Query: 246 V 246 + Sbjct: 72 I 72 >gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 237 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 16/189 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V SD + L K + L +F + + Y Sbjct: 51 QQMLPDLVISDVMMPRLDGFGLLRKLREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 110 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177 FD + + + + + +L++ ++G +A QA+ + D Sbjct: 111 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQADALPNQD 170 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 T RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 171 PV---QHNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTETSSRTELV 227 Query: 238 AYAVRNNIV 246 YA+++++V Sbjct: 228 RYALQHHLV 236 >gi|26987503|ref|NP_742928.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24982170|gb|AAN66392.1|AE016267_1 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 905 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 8/136 (5%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLL---AAYQA 170 + G + + L + G + L K L+++L A Sbjct: 769 ALLLDEGKEGQAAQLLPSLLEAAHGGVMQPMQPLLEKHPQWLQEQLQAGAACPVQAELLK 828 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ G L+GRE+ L I++G ++ +I+ L IS +TV + + I K Sbjct: 829 HLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGV 888 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 889 ERRTQAVAKAKSLGLL 904 >gi|304394580|ref|ZP_07376499.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130] gi|303293241|gb|EFL87622.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130] Length = 221 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 43/68 (63%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + ELT RE++ L +++G+++ EIA +LG+S TV+++ ++IMRK + + + Sbjct: 148 AEEETNELTSREMQVLQSLAKGRSNREIAEVLGVSPKTVDSHRSNIMRKFGVHSIATLLV 207 Query: 239 YAVRNNIV 246 A+R ++ Sbjct: 208 EAMRQGLI 215 >gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 222 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 43/88 (48%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + + D + LT RE E L ++EG +S EIA +L IS TV Sbjct: 133 LYPGAVTALIRNYLDRVRDGEEAPEQLLTPREEEVLKLVAEGHSSKEIAELLFISVKTVQ 192 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +++ K + R YA+R +V Sbjct: 193 RHRENLLHKLGLRDRLDLTRYAIRAGLV 220 >gi|124008987|ref|ZP_01693672.1| DNA-binding response regulator, LuxR family, putative [Microscilla marina ATCC 23134] gi|123985413|gb|EAY25321.1| DNA-binding response regulator, LuxR family, putative [Microscilla marina ATCC 23134] Length = 222 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + ++ + E T RE+E L + E T+ EIA L ISR TV + ++ KT + Sbjct: 142 RPPRPNFINEGEFTDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGARNL 201 Query: 234 SGAIAYAVRNNIV 246 +G + YA++N +V Sbjct: 202 AGLVIYALQNQLV 214 >gi|326315443|ref|YP_004233115.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372279|gb|ADX44548.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 254 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 52/154 (33%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 VR + L+ + ++ Q + E + + L+ Sbjct: 95 VRVLMLTVSEDGEDLAQALRQGAQGYLLKTIEGDLLADAIGRAARGEPVVSMELMGKLVA 154 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 F + + A A + G L+ RE + L I+ G ++ EI Sbjct: 155 AFQAQGGPPAAPVRAVDADAETAAIACEPEAATPGGASPLSPREEDVLREIARGASNKEI 214 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 A L I+ TV ++ I+RK +R A YA Sbjct: 215 ARALDIAETTVKIHVQHILRKLGLSSRVQAAVYA 248 >gi|256396913|ref|YP_003118477.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363139|gb|ACU76636.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 227 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 3/135 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L ++ A A Sbjct: 90 VYDALAAGASGFLLKDVTPEHLVASVRLVDTGDALLAPSITRRLVEKFAAPPAEDAGGAK 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE E L + G ++ E+A L +S TV ++A I K + + Sbjct: 150 ASPAVHRDLAA---LTPREREILALMGRGLSNTELAARLVLSEATVKTHVAHIFTKLSLR 206 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A +V Sbjct: 207 DRAQAVVVAYETGLV 221 >gi|256376957|ref|YP_003100617.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921260|gb|ACU36771.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 492 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%) Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVEC 193 FD A +R + P G I + +G A + ++ DF L+ RE++ Sbjct: 359 FDPAGVRALATRIAPVGGTISVEVDHRLGATATLVLPLRRALAAPEEVPDFGLSARELDV 418 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L+ ++ G + EIA + +S T+ ++ I K TR A A AV +V Sbjct: 419 LSRVARGLRNREIAREIQLSPATIKFHLVRIFEKLGVGTRGEAAAVAVEFGLV 471 >gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Clostridium cellulovorans 743B] gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] Length = 805 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ +E+E + I+EG T+ EIA L IS TV +IA++++K + R A+ A N+ Sbjct: 744 ELSKKELEVIRLIAEGCTNGEIAARLDISTATVKFHIANLLKKLNAENRIMAVKIASEND 803 Query: 245 I 245 + Sbjct: 804 L 804 >gi|258650584|ref|YP_003199740.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553809|gb|ACV76751.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 524 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + LT RE + L + G++S +IA L IS T N++ I KT R Sbjct: 445 QPQPRRRARATGLTAREEQVLALAAVGRSSRQIAAELTISEKTARNHLEHIYTKTGVSNR 504 Query: 234 SGAIAYAVRNNIV 246 +GA +AV++ IV Sbjct: 505 AGASLFAVQHGIV 517 >gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 10/195 (5%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTE 107 AL +Y + + ++ + P L+ + L + + ++QR Sbjct: 17 ALQQYFALAPAITCEAVFPNAEEALRRIPKLAPELLLVDINLPKMNGIEFVGQIVQRCPG 76 Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL 164 + C + E + C I + G + L + Sbjct: 77 ILCLMLTMYEETPLIFDALKAGACGYLLKETPPHEIVAAIEEAKAGGSPMTP--LIARRV 134 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ +Q G+ LT RE E L +++G EI I+GIS +TVN++ I Sbjct: 135 VSFFQKQPVPPPAAQSGE--GLTDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHI 192 Query: 225 MRKTATKTRSGAIAY 239 K ++R A+A Sbjct: 193 YEKLQVRSRGQAVAK 207 >gi|330897589|gb|EGH29008.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 222 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPILNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + L RE + L ++ G ++ Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLPPRERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] Length = 200 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 1/141 (0%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 E + PE + G M L R LRD + + Sbjct: 59 LEALRGILSEWPEARIVVLTTYRGDAQAMSALKSGARGFM-LKGMMRKELRDTIRAVHAG 117 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +L+ RE+E L ++ G + EIA L ++ TV ++ I+ Sbjct: 118 RRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRIL 177 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K K R+ A+ A++ I+ Sbjct: 178 SKLGAKDRTHAVLLALKRGIL 198 >gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 236 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174 G+D R LT AR + M+ +L+D EI L LA+ N+F Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162 Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S D ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222 Query: 233 RSGAIAYAVRNN 244 R A + N Sbjct: 223 RVAATIMYLENK 234 >gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 219 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 10/171 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V+ D L+ + + P L F + + Sbjct: 50 DVVAMDVRMPLMDGIGATRAVLAMAG-PLPKILVVTTFENDAYVYDALRAGADGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + ++ ++ + LA + + LTGRE E L Sbjct: 109 RPAEIAHAVRVVAAGDSLLFPAAVRR---LADHHGGRAPAP------FPGLTGREGEVLR 159 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV ++++++ K + R+ A+ A + V Sbjct: 160 LMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210 >gi|307324066|ref|ZP_07603275.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890515|gb|EFN21492.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 430 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 47/124 (37%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 + D+ L R L G + D + E G L + Sbjct: 299 GDGELRATVRDDGPGVLRRTALDARRVGERLSALGGRLDVDAVPEWGTLVTATVPLGPPQ 358 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + L RE+E L ++ G+ + +IA L IS +TV ++A+I+ K +R A Sbjct: 359 PARKDPLYVLGARELEVLERLARGRRNRQIAQELHISESTVKFHVANILEKLGVTSRGEA 418 Query: 237 IAYA 240 A A Sbjct: 419 AALA 422 >gi|301155137|emb|CBW14601.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Haemophilus parainfluenzae T3T1] Length = 219 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 17/194 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 L++ + + +V + F++V + + + + P + L Sbjct: 18 LIIDDHPLMRRGIKQLVELEENFEVVADVGSGTEGISIAIQESPDLIILDLNMKGLSGLD 77 Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164 T G+D R LT A+ I ++ +L+D ++ L Sbjct: 78 TLKGLRAEGVDARILILTVSDAKNDIFTLIDSGADGYLLKDTEPDVLLEQIKRIAQGEVI 137 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ N+ LT RE++ L I+ G ++ +IA L IS TV +I ++ Sbjct: 138 LSDSIKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 197 Query: 225 MRKTATKTRSGAIA 238 +RK +R A Sbjct: 198 LRKLNVHSRVAATV 211 >gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis XB6B4] Length = 215 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N Y + A ++ ++ + I + L+ + M D K LT Sbjct: 100 NGYLLKDSESAELKKAILAVVNGEDYI------QPSLIPVLNSKMLDR-DSDSSKIESLT 152 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 RE+E L +S G + EIA L IS TV N++++I +K R+ Sbjct: 153 RRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199 >gi|282801760|gb|ADB02863.1| AzicR5 [Kibdelosporangium sp. MJ126-NF4] Length = 214 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 7/193 (3%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E +G++ DL + + D +V +D +A++ + + V Sbjct: 27 IEVIGSAADGQAAVDLARRLRPD-VVLTDIRMPRRDGIAVTRALAGVGITD---PIRVVV 82 Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 T + + C V + ++L+ D L + ++ Sbjct: 83 LTTFDLDEYVYDALHAGACGF---VLKRSGPVLLVEAVRAAFHGDTLISPSVTTRLLRHL 139 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE E +++G T+ EI L IS T ++A++ RK + Sbjct: 140 TGRDDEPDALAEPLTAREREVAGLVADGLTNAEIGTRLFISAGTAKTHVANVQRKLGVRN 199 Query: 233 RSGAIAYAVRNNI 245 R G +A + Sbjct: 200 RVGIAIWAQARGL 212 >gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586] gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586] Length = 224 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA ++S + +LT RE + + + G ++ EIA L Sbjct: 125 ILQDEMWLARKLAQEYILHYRSGNSVVTSQMYAKLTKREQQIIKLLGSGSSNIEIADKLF 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|83716249|ref|YP_439875.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650074|gb|ABC34138.1| autoinducer-binding transcriptional regulator, LuxR family, putative [Burkholderia thailandensis E264] Length = 238 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 112 VFHTLPEN-ITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------- 162 VF ++ + + RY +L+ +G + R I+++ L +I Sbjct: 93 VFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELDDIEPEMIWL 152 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA + G+ ++ E + L W +EGKT EI+ IL +S +N +I Sbjct: 153 AHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMSVRNINFHIQ 212 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K ++ A A ++ Sbjct: 213 NVVGKLGATNKTHAAVKATLVGLI 236 >gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 147 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + + L+ RE E LT I++G ++ EIA L +S NT+ + +++ K K R+ A+ A Sbjct: 83 EKYNLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRRTQAVQKAK 142 Query: 242 RNNIV 246 ++ Sbjct: 143 EIGLL 147 >gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] Length = 274 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 12/168 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132 P L+ + + +D + + + R L F A + + Sbjct: 104 PDVLLMDIRMPRRDGLWALAELGRRGLLGQGRSRVLMLTTFDLDAYVDDALAAGASGFLL 163 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + + I + + + + D + +LT REV+ Sbjct: 164 KNSSYEELTGAVRAAAAGHSALSPAVTQRI--IEGHLSGRRQPSDQELARLGDLTEREVD 221 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L I +G ++ EIA L +S +TV +++ ++ KT ++R+ A A Sbjct: 222 VLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA 269 >gi|259418455|ref|ZP_05742373.1| transcriptional regulatory protein DegU [Silicibacter sp. TrichCH4B] gi|259345850|gb|EEW57694.1| transcriptional regulatory protein DegU [Silicibacter sp. TrichCH4B] Length = 212 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE L ++EGK + EI L ++ TV ++ SI K R+ A+ A N Sbjct: 151 PLSDRETTVLNLLAEGKPNKEIGSDLNLAEPTVKMHVKSICTKLGASNRTQAVIVARDLN 210 Query: 245 IV 246 ++ Sbjct: 211 LI 212 >gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA A+ D LT RE+E L + EG ++ +I+ L +S+ TV +++ Sbjct: 134 SALAPSVAHRLM--DRMRTPAEALTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLV 191 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+A A ++ Sbjct: 192 HIYAKLGVDSRTSAVAAATARRLI 215 >gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 214 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ REVE L + G ++ EIA L IS TV N+++ + K + R A+ +A+++ Sbjct: 141 LPLSTREVEILDCMVRGLSNREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQH 200 Query: 244 N 244 Sbjct: 201 G 201 >gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 40/78 (51%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + +S +LT REVE L ++ G ++++I L IS T ++++IMRK Sbjct: 135 AAAVVRSMSGRSESRAQLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKL 194 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A+ A + ++ Sbjct: 195 EVSRRAEAVYAASKRGLI 212 >gi|239930061|ref|ZP_04687014.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438397|ref|ZP_06577787.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341292|gb|EFE68248.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 227 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 6/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNR 129 + P +V + + E D P L F + Sbjct: 42 RLAEELAPDVVVMDVRMPELDGIAATRIITGREDAPRVLVLTTFDLDAYVFEALRAGASG 101 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + A + G+ ++ ++ + A A + LT R Sbjct: 102 FLLKDVHAAELLHGIRVVAAGESVLAPSATRRLIGHYASGAVTGIGGGSTPRELDGLTAR 161 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E L ++ G T+ EI LGI+ TV +++ +++RK + R A A + Sbjct: 162 ERSVLALVASGLTNAEIGGQLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLGL 217 >gi|73748274|ref|YP_307513.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669054|ref|YP_001213872.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432323|ref|YP_003462196.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|73659990|emb|CAI82597.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270002|gb|ABQ16994.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] gi|288946043|gb|ADC73740.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+E L S+G ++ EIA L +S TV ++++I K R+ AI R Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 245 IV 246 V Sbjct: 214 YV 215 >gi|330891428|gb|EGH24089.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 222 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ + Y + GL Sbjct: 59 RMPVLNGLGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDPSRDEVIAGL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + LT RE + L + G ++ Sbjct: 119 QRVARGEEALNST------VSARLLRRMTERNTSGAALPESLTPRERQVLGLVGGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214 >gi|318041781|ref|ZP_07973737.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 228 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 15/213 (7%) Query: 37 IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE-- 94 + + + L E +S L+ + EQ S + + P++L+ C E Sbjct: 26 GKVALALKGRFFLRCLCESFSSST--LIGCAVTDEQSCLSYLQQE-PYELLICTDFLENG 82 Query: 95 -KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 + ++ V L + I + ++ + F + + Sbjct: 83 NGFELARKARQCQPQLKVVVLALGDAIPVEYAEASWLEAVVAEAD---------FIEDQK 133 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 L + + +Y++ +S + + LT RE E L ++ G T EIA L +S Sbjct: 134 PLEAAVMAVMGHHSYRSPSLRSGQLPYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVS 193 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T Y +++ R A+ +R +V Sbjct: 194 EETARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226 >gi|300782878|ref|YP_003763169.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792392|gb|ADJ42767.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 1/164 (0%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 P ++ + + E D + E V ++ R + F + R Sbjct: 48 PDVVLMDVRMPEMDGIEATRRICAETDVRVLMLTTFDLDEYVYSALRAGASGFLLKDTRP 107 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + L + D L + A + + +T RE E LT I+ G + Sbjct: 108 ADL-LAAIEVVASGDALLAPSVTRRLVAEFARLPSGPVTRLDGVTAREQEVLTLIARGLS 166 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +DEIA L + TV +I ++ K A + R+ + A + +V Sbjct: 167 NDEIAARLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV 210 >gi|291004781|ref|ZP_06562754.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 212 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + G + + + + ++ LL + Sbjct: 77 FDLDEYALAALRGGAGGFLLKDTPPDGLVTAVRSVASGDAVVSPSVTRR--LLDRFLGGD 134 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D LT RE E L +++G ++ E+A L +S T+ ++ I+ K + Sbjct: 135 GGALRDPGVLDV-LTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRD 193 Query: 233 RSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 194 RVQAVVLAYETGLV 207 >gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 220 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 39/62 (62%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT REV+ L +++G ++ IA +L IS NTV +I++I+ K +R+ A++ ++ Sbjct: 157 PLTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKAG 216 Query: 245 IV 246 +V Sbjct: 217 LV 218 >gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida F1] gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 235 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 11/161 (6%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 M + D Y + E C H L T + D ++ VAR + +L Sbjct: 84 STMPVLWTDDLYKEAPQFRETAC--QHGLRHGWT-QSLHDQQHNESQISVARPNGHIDML 140 Query: 148 FPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + L +L + N +++ RE+E L W + GKT+ + Sbjct: 141 ELYDKAGSVQWLCHTLHAVLGEHHLNAL------CPPQPKMSERELEVLKWSAAGKTAAD 194 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +A IL +S++TVN +I S++ KT ++GAIA A + Sbjct: 195 VASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] Length = 215 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R LL Y+ + +LT RE++ L + G ++ +IA L IS T Sbjct: 129 PRKVAAQLLHYYRHVVL---SQTAPATVDLTSREIQILRCLKTGASNMQIAEDLFISEFT 185 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243 V +++ I +K + K R AIA+A ++ Sbjct: 186 VKSHLYQIFKKLSVKNRVQAIAWANQH 212 >gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISE 199 L+ I+ R+ G + A + + D H G+ LTGRE E L ++ Sbjct: 104 LLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREGEVLRLMAR 163 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G ++ EIA L + TV ++++++ K + R+ A+ A + V Sbjct: 164 GLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210 >gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 225 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 76/199 (38%), Gaps = 22/199 (11%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107 +Y+ + ++ + +E I+ D P ++ + + E D Y +++ + Sbjct: 37 DYLEFRGYEVITAENGREAL--EILEHDVPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 93 Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 LF + + + Y F+ + + + + W+ Sbjct: 94 IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTIRWKEHQ 147 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + D +LT E++ + +++ G + EIA L +S+ TV ++++++ Sbjct: 148 AKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203 Query: 225 MRKTATKTRSGAIAYAVRN 243 + KT R+ +A+ N Sbjct: 204 LGKTNLHNRTELARWAIEN 222 >gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 7/162 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143 +R + VL+ V E + Y + A + Sbjct: 59 MRLADGNGVQATTEVLEVSPATRVLVLSASDEREDVLEAVKAGATGYLVKSASKAELSDA 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + + L + + LT RE E L ++++G ++ Sbjct: 119 VRATAAGRAVFTPS----LAGLVLGEYRRIATSTDSGPARPSLTERETEVLRYVAKGLSA 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +IA L +S TV N++ + RK R YA+ + + Sbjct: 175 KQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216 >gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 221 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 11/159 (6%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLL 147 +S + + Q+ + + ++ Y T + I + Sbjct: 66 GMSGIEGLALLRQQARKTALVILTVFEDDDKIFRAICAGAAGYLLKTSSIEDIAAAIRTA 125 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 G I +A MF + +D+ LT RE E L + +GKT E A Sbjct: 126 AAGGSPINPT-------IARRVLEMFSKANP-PARDYGLTPREQEILEVLVQGKTIKEAA 177 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS T + YI S+ K ++RS A+A AV +V Sbjct: 178 AALKISYYTADEYIRSVYDKLQVRSRSSAVAKAVSEGLV 216 >gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 23/186 (12%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP------PAGMDNRYC 131 P ++ + + + D Y +L++ E PV + +T AG+D+ Y Sbjct: 58 MPDVVITDVMMPQCDGY-ELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDD-YI 115 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD- 183 FD + + + + +L + ++G +A +M D + + Sbjct: 116 PKPFDPDELVARVKNVVKRQERLLAEAARFADTDVGQMAKQITEIKSMLTQNDSNSSRKD 175 Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA Sbjct: 176 LVIPSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 235 Query: 241 VRNNIV 246 + N++V Sbjct: 236 LENHLV 241 >gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 258 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 150 KGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEI 206 + + +L LLA A+QA + D + LT RE ECL + ++G T+ I Sbjct: 157 EAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGMTAKSI 216 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L S TVN ++ S RK + R A+ + ++ Sbjct: 217 AATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 256 >gi|302334932|ref|YP_003800139.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084] gi|301318772|gb|ADK67259.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084] Length = 245 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 11/221 (4%) Query: 25 HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS--IVSSDW 82 + +R DL + + + LT +H + + + LD ++ S Sbjct: 31 RILSRDDLKSLTVESNGHT------RCLTNR--GAHPDICERFILRVIDLDPGDVMVSMC 82 Query: 83 PFDLVRCMALSEKDKYYNV-LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141 PF L+ + K + + ++ F V + E R + + Sbjct: 83 PFGLLSAIVPLGKSMWAGLHEEKARYFFLAVHNPAYEGAGGVEVEQKRTVTSIVSGMDLH 142 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 + + L L Q ++ + V + LT RE E + + G Sbjct: 143 DKIEFEEKVRLVASVFDLVFSILTEQEQQDLIATGAVGMAELRRLTKREREVMRLVCVGM 202 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ++ +A L IS +TV +++SI++K R+ Y + Sbjct: 203 SNQRVAEELFISEHTVKLHVSSILKKLNLANRTQLAIYGAK 243 >gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + G +L + + L + Y + S + +L+ RE E L Sbjct: 95 SLRAGAKGFLLKTTSPEALAK-ALQTVVSGGLYLDSEVASAMGEVPQMEDLSPREREVLL 153 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + + G +S E+A L IS TV ++ASI K ++ A+ A++ ++ Sbjct: 154 FAARGLSSKEVASHLFISERTVQTHLASIYDKLGAHNKTEAMLLALKYGLL 204 >gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] Length = 202 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 ++V + + ++ D FD+V + V +P L + Sbjct: 1 MIVDDHPLMRRGIKQLLELDSIFDVVAEANNGGEAIIEAVKHQPDVILLDLNMKGMSGLE 60 Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164 T G+D R LT AR + ++ +L+D EI L Sbjct: 61 TLKTLRNEGIDARIIVLTVSDARSDVYAVIDAGADGYLLKDSEPEILLENIRQAAAGENV 120 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + A S ELT RE++ L ++ G ++ ++A L IS TV +I ++ Sbjct: 121 FSNEVAQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 180 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK ++R A + N Sbjct: 181 LRKLNVRSRVAATIMYIENK 200 >gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 252 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 41/78 (52%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + D + T RE + + ++ G ++ EIA +LG+S T+ ++++S++ K Sbjct: 166 AAVCVGADDPDSCWKEQFTDREKDVVALVATGASNAEIAGVLGLSETTIKSHVSSVLAKR 225 Query: 229 ATKTRSGAIAYAVRNNIV 246 + R + +A R+ +V Sbjct: 226 GLRNRVQLVVWAFRSGLV 243 >gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 211 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 26/183 (14%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 +R + + ++ S WP V + D Y L Sbjct: 55 IRMPVMDGLEAARLIRSRWPDMKVFILTTFNDDNYA-------------LEALKSGACGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 D L + G + L + RL K D Sbjct: 102 MLKDAEPEELIRSIRSCLAGGLSLQDHVAAKVMPRL-------------IKQSTEEVKVD 148 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE++ + I EG+++ EIA+ L +S TV N+I+ I+ K + R+ YA+++ Sbjct: 149 PSLTPRELDIIRKIGEGRSNKEIAMQLSLSVGTVKNHISIILDKLELRDRTQIAIYAIKH 208 Query: 244 NIV 246 ++V Sbjct: 209 HVV 211 >gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 38/67 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L+ REV+ L+ ++ G + EIA +L I+ +T +++ SI+ K R+ A+ Sbjct: 141 RNSFEQLSPREVQVLSELARGLANKEIADVLNITEHTTKDHLKSILAKLRVADRTEAVTV 200 Query: 240 AVRNNIV 246 A++ I+ Sbjct: 201 ALQRGII 207 >gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708] gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 91 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 39/67 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + Sbjct: 4 SESGTPVSLSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRVALV 63 Query: 238 AYAVRNN 244 +A++ Sbjct: 64 RWALQWG 70 >gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 312 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 62/177 (35%), Gaps = 7/177 (3%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121 L L + + IV +D A Y P + P + T Sbjct: 124 LYAEAALSLDTRAALIVGADGTIRWQSPQAARHIAAYTTAHDAPADARQPTNARDTDAPT 183 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--- 178 + + +AR G + I R G + + K D Sbjct: 184 RLPALLRTWFVDW--LARGAPGDAVHEFSSGQIRRSASATRGPEPSEWIVILKERDDTVH 241 Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 242 CNALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298 >gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 214 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 5/176 (2%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRY 130 L + + ++ M + + + + + + L I + Y Sbjct: 40 LSWLAEGNSATLILTDMNMPGLNGLGLIKEMKANMPTVILSMLDHENYVIEAITAGAHGY 99 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + + GL + G+ I + LL + EL+ RE Sbjct: 100 LLKSINKDELLFGLRHVADGGKYICME--LTFKLLDKLSGYSPINEPHKTIIAIELSERE 157 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ISEG T++EIA L SR TV + +++ KT K I +A++N ++ Sbjct: 158 KEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQNGLI 213 >gi|297156497|gb|ADI06209.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 42/62 (67%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+GREVE L ++EG+++ I V +G+S TV +++A I RK T R+G +A A+R Sbjct: 157 ELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 216 Query: 245 IV 246 I+ Sbjct: 217 II 218 >gi|295840294|ref|ZP_06827227.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] gi|295827900|gb|EFG65696.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] Length = 231 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFD 136 P V +A+ + L R + T+ +N Y + Sbjct: 64 PDLAVLDIAMPRMTGLQAARELSRALPGLRMIVLTMYDNEQFFFEALGSGAGGYVLKSLA 123 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + L+ Y + D+ G LT RE E L Sbjct: 124 DRDLIEACRAAMRDEPFLYPGATG--ALIRNYLDRARRGEDLSGGSP--LTPREEEILKL 179 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG +S +IA +L IS TV + A+ + K K R YA+R +V Sbjct: 180 VAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 229 >gi|302864805|ref|YP_003833442.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302567664|gb|ADL43866.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 220 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + + A + G+ ++ +I L+A + A + Sbjct: 94 RAGASGFLVKDTEPAELIHGVRVVARGDALIAPAVTRR--LIAEFAARTRHPD--PGPRL 149 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++ G ++DEIA L +S T +++ IM KT + R+ + A + Sbjct: 150 NALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYES 209 Query: 244 NI 245 + Sbjct: 210 GL 211 >gi|256391849|ref|YP_003113413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358075|gb|ACU71572.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 26/241 (10%) Query: 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64 + + +++ +D+ + + + + + + + + V + V Sbjct: 1 MSALRVLIVDDDDLMRAGLCAVLSSDTTIEVVAEAADGHAAVQAAARVLPDV---ILMDV 57 Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 R + + + WP V + E D Y V+ L + Sbjct: 58 RMPVLDGIAATRQIVAAWPRARVLILTTFEDDDY-------------VYGALAAGASGFL 104 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 R L + I G LL P + DR+ E + Sbjct: 105 LKRTRPEHLIAAIHTIAGGEALLSPAVTRTVIDRMIE----------QPARDPRTMRRLS 154 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L ++ G ++ EIA L +S +TV ++ I+ K + R A+ A Sbjct: 155 ALTPRERDVLELVARGLSNPEIAQTLVVSESTVKTHMKRILDKLDLRDRVQAVILAYEAG 214 Query: 245 I 245 + Sbjct: 215 V 215 >gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 234 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 18/172 (10%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 ++ SD PF + +R + P L P G +++ Sbjct: 79 RHVLDSDAPFFWSKRQGARG--------ERYQVVKQPRGDGLHGLQVPVFGTTGLEGAIS 130 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 F A + L E AA++ + L+ RE E L Sbjct: 131 FAGAAVDASARARL----------LLEAVATAAFRTARRLAEAPAELPVGALSAREREVL 180 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W++ G+ EIA LG+S TV N++ ++ T + A+ A R + Sbjct: 181 RWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRGEI 232 >gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 213 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 14/131 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + R L + + G LL P + DR+ + Sbjct: 93 FSAIMAGAAGYVLKEIRGNDLVSAIRTVAAGGSLLSPSVTRRVLDRMRQ----------- 141 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D L+ RE E L I+EG T+ +I + +S TV NY++SI+ K + Sbjct: 142 GPREDPTLA---SLSAREREILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGMTS 198 Query: 233 RSGAIAYAVRN 243 R+ A YA++ Sbjct: 199 RTQAAVYALKK 209 >gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 38/82 (46%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +AA D LT RE LT I EG + EIA LG+S TV N + I Sbjct: 129 VAAKVVPTLLQNQEEPSIDPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSHI 188 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K A + R+ YA+R+ +V Sbjct: 189 FDKLALRDRTQLAIYAIRHRLV 210 >gi|308178154|ref|YP_003917560.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745617|emb|CBT76589.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + +T Y + + A I + + + L Sbjct: 86 RFLALSVSDAAQDVVTVIRSGARGYVTKSISGAEISDAVRRVAGGDAVFSP-------RL 138 Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + + F S D EL + RE++ + I+ G + E+A L IS TV ++++ Sbjct: 139 AGFVLDAFGSSTPVAEIDEELDLLSDRELQVMRLIARGYSYKEVAKELFISVKTVESHVS 198 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++RK R +AV I+ Sbjct: 199 NVLRKLQLSNRHELTRWAVDRKIL 222 >gi|302867758|ref|YP_003836395.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570617|gb|ADL46819.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 222 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P L DR A+ Sbjct: 91 VYAALRAGASAFLLKDTRPADLAEAVRVVARGEALLAPTVTRRLLDR----------YAD 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE E LT + ++ EIA L +S TV ++++I+ K + Sbjct: 141 RLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 201 DRIQAVVLAYDTGLV 215 >gi|77460927|ref|YP_350434.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77384930|gb|ABA76443.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 911 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 5/182 (2%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 Q+ LD I + + L + L L V L A Sbjct: 729 QQALLDVIQGQPMLAEGRLNVLLENGQQTGRQLLSVMALTQKVVLLLAGGRESEARKALG 788 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIIL-RDRLWEIGLLAAYQANMFKSYDVHWGKD----F 184 ++ +LL + + +L F V + Sbjct: 789 QALEAAAGGVLQPFEILLKEHSEWLRGQLQLNAATAFCQQLLEHFPQASVRSQAESVTTE 848 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +L+ RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A Sbjct: 849 QLSSRELAVLRLIAQGCSNQEISDQLFISLHTVKTHASHINSKLGVERRTQAVARAKELG 908 Query: 245 IV 246 ++ Sbjct: 909 VL 910 >gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 217 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V +R G LL P L +R +AA Sbjct: 87 VYAALTAGASGFLLKDVSPEQLVAAVRLVRAGDALLAPTITRRLVERFASPERVAAATHR 146 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE+E L +++ G ++ E+A +S TV ++A I+ K + Sbjct: 147 DLAT----------LTPRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLR 196 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 197 DRVQAVVVAYETGLV 211 >gi|271963471|ref|YP_003337667.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506646|gb|ACZ84924.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 205 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ REVE + +++G ++ +IA L IS TV +++ I K R+GA+ Sbjct: 137 RSPRASLSPREVEIVLLVADGLSNRQIARELFISEATVKSHLVHIYAKLEVDNRTGAVKV 196 Query: 240 AVRNNIV 246 A R ++ Sbjct: 197 ARRRGLL 203 >gi|284029107|ref|YP_003379038.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808400|gb|ADB30239.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 216 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 11/220 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 + R++ +D + L + VG + L +E + D +V D + Sbjct: 1 MIRVLVVDDQDLVRAGLRLLIDNTDDLRVVGEASDGREALALAREHQPD-VVLMDLQMPV 59 Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 + + + + +L+ + F + + + Y +R + Sbjct: 60 MGGVETTAAIRADPLLKDTPVVVLTTFDHDADVVDAVQAGASGYLLKDLAADELRGAIRT 119 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 G I ++ L ++ + S V LT RE++ L + G +++EI Sbjct: 120 AVTGGAPIAP----KVAKLMMHRISRMPSRKVQEETLAGLTARELDILAHVGRGLSNEEI 175 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S T Y++ ++ K + RS + A + +V Sbjct: 176 GQALFLSPETARTYVSRLLAKLGVRDRSQLVVLAHKAGLV 215 >gi|224542843|ref|ZP_03683382.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] gi|224524239|gb|EEF93344.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] Length = 224 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 6/166 (3%) Query: 86 LVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVAR 139 ++ + + D V + + + T ++ + + + Y + Sbjct: 51 ILMDIRMPGMDGVMATKEVKSKYPDTKIIILTTFDDDDFVFSALRYGASGYLLKGVSMDE 110 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + ++ + G +I D ++ + + + V L+ E + + + Sbjct: 111 LYKAVVTVNTGGAMINPDIATKVFSMFSKMQQNNYTIQVDEKDVETLSKPEWKVIQHVGY 170 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 G ++ EIA L +S TV NY++SI+ K + R+ +AV + + Sbjct: 171 GLSNKEIAQKLFLSEGTVRNYLSSILSKLNLRDRTQLAIWAVESGL 216 >gi|91789053|ref|YP_550005.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91698278|gb|ABE45107.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 895 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 43/103 (41%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 L L G D L A + +LT RE+E L + EG Sbjct: 782 ALTLFEQLGARPAADGLRRQLRAAGLRGLPRGMRPSTQTNPHQLTAREIEVLLLLCEGLK 841 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L S TV++++A++ K +R+ A+A A+ I Sbjct: 842 NSEIAERLCRSVRTVDHHLAAVFTKLGVASRTEAVAAALHAGI 884 >gi|33863672|ref|NP_895232.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT 9313] gi|33635255|emb|CAE21580.1| possible DNA-binding response regulator [Prochlorococcus marinus str. MIT 9313] Length = 232 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 7/181 (3%) Query: 69 FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL---FCPVFHTLPENITPPAG 125 +++ L + SS+ DL+ C L E +++++ +L + + Sbjct: 46 GEDETLSCLKSSN--ADLLICTDLLESGNGPSLVRKAKQLKPDLKALMLIQRPLLRTLLD 103 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 +C A +G L I D + ++A + + Sbjct: 104 AIEAHCDGLC--AHELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKSSRQIDN 161 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L I +G ++ IA L +S +TV +++ ++++K + R+ A+ A R+ + Sbjct: 162 LSLREGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGL 221 Query: 246 V 246 V Sbjct: 222 V 222 >gi|317123319|ref|YP_004097431.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587407|gb|ADU46704.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 985 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL LLA + + ELT RE+E L ++ G ++ +I L IS TV Sbjct: 898 RLRARPLLA--ELDALAPRAPAAATAVELTPRELEVLALVARGLSNGQIGKQLYISTKTV 955 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++++++ K R+ A A A +V Sbjct: 956 SVHVSNLLAKLGASGRTEAAAIARDRALV 984 >gi|311064838|ref|YP_003971564.1| two-component system response regulator [Bifidobacterium bifidum PRL2010] gi|313140925|ref|ZP_07803118.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|310867158|gb|ADP36527.1| Two-component system response regulator [Bifidobacterium bifidum PRL2010] gi|313133435|gb|EFR51052.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 238 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 +L+A+Q G+D EL +GRE E + I+ G T E+A L IS TV + Sbjct: 153 VLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 212 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +++++RK R+ +A IV Sbjct: 213 MSNVLRKLQLSNRTELTRWAADRRIV 238 >gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 205 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 14/171 (8%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLM 145 + E + ++ +L P H L + I +++ +Y LT + I Sbjct: 34 NGLEAMEVLEKHSPDVALVDLRLPGEHGL-DIIEKARSINSTCKYIVLTSYATKEEIKQA 92 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSY-----------DVHWGKDFELTGREVECL 194 + IL++ L E + + + + Y + + K ELT RE+E L Sbjct: 93 MALEVDGYILKETLPEELITSVRMIHKGRKYFDPVIVQHALEEKNEDKLSELTTREMEVL 152 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++S G + +IA L IS +TV ++ I+ K + R+ A Y V + Sbjct: 153 KFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRTQAALYGVSQAL 203 >gi|146276004|ref|YP_001166164.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322695|gb|ABP64638.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 248 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 7/136 (5%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILR------DRLWEIGLLAAYQA 170 + + R +G ++ + + + + + L Sbjct: 108 DCSGVAKSFGGEAIVAPVHLPRGIVGAVVWCSREPIGVAQVFAGKAEHFQALALRLVATH 167 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N + + G +LT REV+CL W + GKT EI +IL +S +TV ++ + K Sbjct: 168 NEARGRPRNAGVPQKLTRREVQCLRWAAAGKTDGEIGIILDLSHSTVRFHLRNAAEKLGA 227 Query: 231 KTRSGAIAYAVRNNIV 246 R+ +I A V Sbjct: 228 TGRAQSIQLAAGLGYV 243 >gi|325576790|ref|ZP_08147405.1| nitrate/nitrite response regulator protein NarL [Haemophilus parainfluenzae ATCC 33392] gi|325160996|gb|EGC73114.1| nitrate/nitrite response regulator protein NarL [Haemophilus parainfluenzae ATCC 33392] Length = 209 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 17/194 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 L++ + + +V + F++V + + + + P + L Sbjct: 8 LIIDDHPLMRRGIKQLVELEENFEVVADVGSGTEGISIAIQESPDLIILDLNMKGLSGLD 67 Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164 T G+D R LT A+ I ++ +L+D ++ L Sbjct: 68 TLKGLRAEGVDARILILTVSDAKNDIFTLIDAGADGYLLKDTEPDVLLEQIKRIAQGEVI 127 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ N+ LT RE++ L I+ G ++ +IA L IS TV +I ++ Sbjct: 128 LSDSIKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187 Query: 225 MRKTATKTRSGAIA 238 +RK +R A Sbjct: 188 LRKLNVHSRVAATV 201 >gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 212 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 4/153 (2%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + +R L F A + + + A + + + Sbjct: 62 GIGATQQIVKAGRRARILVLTTFDDDDHLYPALAAGASGFFVKDTEPAELLGAIRRIAEG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L + +A + D + LT RE + L ++EGK++ EIA L Sbjct: 122 EMVFTPELLRRV----VDRAVIGGIADTAATEKVPLTDRESQVLALVAEGKSNQEIAETL 177 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + TV ++A++M KT R Y ++N Sbjct: 178 HLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210 >gi|158425732|ref|YP_001527024.1| two component transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332621|dbj|BAF90106.1| two component transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 310 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 ++ E +L + + +T RE E L WI+ GK + +IA ILG+S TV Sbjct: 220 QIGEQEVLLRVTDEVRVRDEDILRTALGITQREAEVLLWIARGKPNRDIAEILGLSPRTV 279 Query: 218 NNYIASIMRKTATKTR 233 N ++ I K + R Sbjct: 280 NKHLEQIYAKIGVENR 295 >gi|148546040|ref|YP_001266142.1| regulatory protein LuxR [Pseudomonas putida F1] gi|148510098|gb|ABQ76958.1| regulatory protein, LuxR [Pseudomonas putida F1] Length = 905 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 8/136 (5%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLL---AAYQA 170 ++ G + + L + G + L K L ++L A Sbjct: 769 SLLLDEGKEGQAAQLLPSLLEAAHGGVMQPMQPLLEKHPQWLHEQLQAGAACPVQAELLK 828 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ G L+GRE+ L I++G ++ +I+ L IS +TV + + I K Sbjct: 829 HLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGV 888 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 889 ERRTQAVAKAKSLGLL 904 >gi|119485367|ref|ZP_01619695.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119457123|gb|EAW38249.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 250 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE+E L I G ++ EI+ L ++ TV ++ SI+ K + R+ A A+R+ Sbjct: 187 YPLTERELEVLELIVGGCSNAEISEKLYVTVGTVKTHVRSILNKLCVEDRTQAAVRALRS 246 Query: 244 NIV 246 +V Sbjct: 247 GLV 249 >gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans 2-40] Length = 227 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 8/131 (6%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--------YQANMFKS 175 A + + T + + L+ G I ++ + + + + A+ Sbjct: 95 AAGARGFITKTSPSDVMISAIKLVLSGGVYIPQEMISALNMPFTAHSSDGITHAASPAPQ 154 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D +LT R++ L + +G ++ EIA L +S +TV ++A+I+R+ K R+ Sbjct: 155 TAPPATGDHQLTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAILREFNVKNRTQ 214 Query: 236 AIAYAVRNNIV 246 A+A+A + NI+ Sbjct: 215 AVAHARQKNII 225 >gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 91 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE++ + ++ G T+ EIA L IS+ TV+N++++I+ KTAT R + +A++ Sbjct: 10 VTLSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVRWAMQW 69 Query: 244 N 244 Sbjct: 70 G 70 >gi|254519013|ref|ZP_05131069.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226912762|gb|EEH97963.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 214 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 43/77 (55%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 +N S + K ++ + +E++ + +I+EG T+ EI+ L +S T+ N I +I+ K Sbjct: 137 SNNNHSLNDKEIKRYDFSDKELQIIKYIAEGLTNKEISEKLYLSEGTIKNNITNILAKLN 196 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ +A +N IV Sbjct: 197 LRDRTQIAIFAFKNRIV 213 >gi|254501452|ref|ZP_05113603.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222437523|gb|EEE44202.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 236 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 23/234 (9%) Query: 36 MIPLDCTVSWTMRMYALTE----------------YVGASHFLLVRWDLFQEQKLDSIVS 79 M + ++ A++E +GA+H L+ + + + Sbjct: 1 MCTMLDQTELKNKLRAISEANAAHHVLDILESNLRRMGATHILITGLPMPNRPIDNLVQR 60 Query: 80 SDWP---FDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 WP D + +LS D L + E+ A + Sbjct: 61 FRWPDQRNDGIESTSLSANDSALMLGLGSNRARIWTITAGDMEHSDLMASAGEGSQIVVV 120 Query: 136 DVARIRIGLMLLFPKGRII--LRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVE 192 V + +F G + + L + L+A + + V G + L+ RE + Sbjct: 121 PVTELYPFQAFVFASGPALQVSKYDLSNLEALSAAAISRLRELGVVSGQRPGALSTRERK 180 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + GKT+ EIA +L IS+ TV+ ++ + K ++ + A+R + Sbjct: 181 VLELTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 234 >gi|323499247|ref|ZP_08104224.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315635|gb|EGA68669.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 222 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201 + LL I+ D +W +A F+ + LT RE E + + G Sbjct: 114 ISLLLKGMEKIMNDEMWLSRKVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ +IA L +S NTV ++ +I +K K R A+ +A Sbjct: 174 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|256396212|ref|YP_003117776.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362438|gb|ACU75935.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 241 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 12/181 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNR 129 + ++ P V + + E D + + + T ++ A + + Sbjct: 59 RLAAAHTPDVAVMDIRMPEMDGIEATRRITESSDTTRVVMLTTFDDDEYVYAALRAGASG 118 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--- 186 + + I + + II + L+A + D L Sbjct: 119 FLVKDMALDSILDAVRVTASGDAIIAPSVTRK--LIAEFAIRPDPGATAPRRGDKALLDG 176 Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E LT + G ++ EIA L IS T ++A + K + R + A + Sbjct: 177 VTDREREVLTLVGRGLSNGEIAEELFISAATAKAHVARLFTKLGARDRVQLVITAYEAGL 236 Query: 246 V 246 V Sbjct: 237 V 237 >gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 79/201 (39%), Gaps = 22/201 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110 +Y+ + +V +E I+ P ++ + + E D Y +V P + Sbjct: 29 DYLELQGYQVVTASHGREAL--RILEQGIPNMIICDVMMPEMDGYTFVKSVRDNPRTQWI 86 Query: 111 PVFHTLPEN------ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 PV + I G D Y F+ + + + +++ + I Sbjct: 87 PVLFLSAKGQIQDRVIGLNTGADV-YMVKPFEPDELIAQIEASLKQAERMIQHQPEAITS 145 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + Q + D LT E++ + +++G + +IA L +S+ TV ++++++ Sbjct: 146 NLSAQVPL----------DVTLTATELKVVQLVAKGMANQKIAEELHVSQRTVESHVSNM 195 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 + KT K R+ +A+ + Sbjct: 196 LGKTGLKNRTELARWAIERRL 216 >gi|120555604|ref|YP_959955.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] gi|120325453|gb|ABM19768.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] Length = 891 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISR 214 R + G A +F V D ++ RE L I++G ++ EIA L IS Sbjct: 800 RHLDNGDFTAALGRLFGCEPVAPAADPLAEPISDREQGVLELIAQGLSNQEIADKLHISL 859 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV + I K K+R+ AI A ++ Sbjct: 860 HTVKTHARRINAKLDVKSRTQAIVRARELGLL 891 >gi|291448479|ref|ZP_06587869.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291351426|gb|EFE78330.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 168 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 K LT R+ E L +++G ++ I L I+ TV ++ + K R+ A+ A+ Sbjct: 94 KPLPLTRRQKEVLNLLAQGLSNRRIGRALHITEQTVKAHLHMVYHKLGVADRTEAVVIAL 153 Query: 242 RNNIV 246 R +V Sbjct: 154 RQGLV 158 >gi|162452375|ref|YP_001614742.1| LuxR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161162957|emb|CAN94262.1| transcriptional regulator, LuxR family [Sorangium cellulosum 'So ce 56'] Length = 270 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + GKT+ EIAV+L IS+ TV ++IA K +R+GA + + Sbjct: 209 LTARELEVLRLVGVGKTNREIAVVLHISQKTVQHHIAHAYDKLGIYSRAGATLWLGERGL 268 Query: 246 V 246 + Sbjct: 269 L 269 >gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 83/208 (39%), Gaps = 29/208 (13%) Query: 54 EYVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQR 104 +Y+ + + + E + ++ + + P ++ + + E D Y + + Sbjct: 26 DYLEFRGYRVTTAENGTEALAILERGANAAKAREMPDMIICDLMMPEMDGYAFLETIRRD 85 Query: 105 PTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 PV P+ +T + Y F+ + ++ L Sbjct: 86 IRFSGLPVIFLSPKGQSQDKVTGLTAGADFYMVKPFEPEELV-----------ALVESSL 134 Query: 160 WEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + G L ++ S DV + + ELT E++ + +++G + EIA L +S+ T Sbjct: 135 KQAGQL-PKRSTRIHSPDVTSLQVPGNVELTPTELKVVQLVAQGLANREIAAKLNVSQRT 193 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244 + +++++++ KT R+ +A+ +N Sbjct: 194 IESHVSNMLHKTGLHNRTELSQWAIESN 221 >gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%) Query: 87 VRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRI 142 VR L+ ++ P V T + + + + Sbjct: 64 VRMPELNGIRATERIVAGPGRPPKVLVVTTFENDAYVYDALRAGAAGFLLKRVAADELIQ 123 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + L+ ++ + LAA + W + +LT RE + L ++ G T Sbjct: 124 AVRLMARSDSLLFPAAVRS---LAAEHGARRTAPVPPWAR--KLTEREADTLRLMAAGLT 178 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA +G+ TV +++A+++ KT + R+ A+ A + + Sbjct: 179 NGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 222 >gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE+E L I+ G T+ EIA L +S TV ++ A I RK RS + YA+ Sbjct: 151 ELTARELEVLRLIARGLTNREIAERLFLSVRTVESHRARIQRKLGRSRRSDLVDYALERG 210 Query: 245 IV 246 +V Sbjct: 211 LV 212 >gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] Length = 234 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 DF LT RE E LT S+G +S EIA L IS TVN + +I K ++ AI A R Sbjct: 171 DFVLTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARR 230 Query: 243 NNIV 246 I+ Sbjct: 231 KGIL 234 >gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 217 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRY 130 +V P +V + + E + Q TE+ E I R Sbjct: 43 EMVEKLQPQIVVMDVTMPELNGLEATRQIKKIAPATEILMFTGLETEELIRQVFEAGARS 102 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L D + + ++ EI L A + K D D LT RE Sbjct: 103 YILKTDGREQLEAALTALAAHKPYFTTQVGEI-LFAKFLHG--KPKDEEQTVDGRLTDRE 159 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + ++EG ++ E+A LGIS TV + A+IM+K K+ S + YA+RN+I+ Sbjct: 160 REIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSFSDLVRYAIRNHII 215 >gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 222 Score = 88.5 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 10/116 (8%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y S + L + + A +A S D GK +T Sbjct: 102 GYLSKALPARELVEALERIHSGEELFNE---------APIRAASAPSLDW-PGKREGITD 151 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 RE E L I++GK++ E+A + +S NTV +YI SI RK ++R+ A+ + V + Sbjct: 152 RESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHG 207 >gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] Length = 247 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 37/86 (43%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L YQ K+ T RE E + W S GK+ EIA+ILGI TV + Sbjct: 154 HEKLTQLYQEQSRKADFEEMNTRELFTSRENEIIYWASVGKSYQEIALILGIKLTTVKYH 213 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 I + ++K AI + N++ Sbjct: 214 IGNAVKKLGVTNAKHAIRLGIELNLI 239 >gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 219 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 158 LTERETEILRYVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] Length = 225 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 77/197 (39%), Gaps = 6/197 (3%) Query: 56 VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPV 112 +GA+ + V + + V D P ++ + + E D + ++ ++ V Sbjct: 21 LGANADMEVTGTAADGRDVLRSVRKDQPDVILMDIRMPEVDGVQCTKIIKEQYPQIKIIV 80 Query: 113 FHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 T E+ + + + Y + + + + II + ++ + + Sbjct: 81 LTTFDEDDYIFSALKYGASGYLLKGVSMEELSGAIRKVSAGQAIINAEVATKVVHMFSKM 140 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A + L+ E + + + G ++ EIA L +S TV NY+++I+ K Sbjct: 141 AQSSLTSPTAGKTLELLSRTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYLSTILSKLE 200 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ +A ++ I+ Sbjct: 201 LRDRTQLAIWATQSGIL 217 >gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ L+ + + Sbjct: 99 RAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRR--LITEFSKIATAPRPPAMARI 156 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 157 GDLTERETEVLVLIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 216 Query: 244 NIV 246 +V Sbjct: 217 RLV 219 >gi|302532669|ref|ZP_07285011.1| two component system response regulator [Streptomyces sp. C] gi|302441564|gb|EFL13380.1| two component system response regulator [Streptomyces sp. C] Length = 191 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ +A + L + F + + Sbjct: 19 DVVLMDIRMPLLDGLAATRAISADQDLADVRVVMLTTFELDEYVFEAIRAGASGFLVKDT 78 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + A + + LT RE E + Sbjct: 79 EPEELLRAVRAVVEGDALLSPGVTRR--LIAEFAARSRRPAPAEGLER--LTDREREVMA 134 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A +V Sbjct: 135 LVGTGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYETGLV 185 >gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 277 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I Sbjct: 215 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 274 Query: 246 V 246 + Sbjct: 275 I 275 >gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 225 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 17/214 (7%) Query: 49 MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 M +T+ +G H+ LV + + + S+ D+P D V + + Sbjct: 5 MAEITKAMGFRHYALVHH-VDLKPAVRSVHIVDYPQDWVERFQARRLYASDPIHRASHRT 63 Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVA-------------RIRIGLMLLFPKGRIIL 155 + ++I D + ++ + G ++ Sbjct: 64 NVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPGELNGSCSFAMAAGEMLD 123 Query: 156 RDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 +L + L+ ++ A + LT R+ EC+ ++ GKT EI+ ILGI Sbjct: 124 HRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVALVARGKTDWEISQILGI 183 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++ + R+ A+ + Sbjct: 184 GQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 217 >gi|294499414|ref|YP_003563114.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349351|gb|ADE69680.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 212 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 5/150 (3%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 M E K + L + L F I Y + RIR + +F Sbjct: 61 MDGVEATKLISELTKAKPLILTTFDDDEYIIDAVKNGAKGYLLKNTEPERIRDAIKSVFN 120 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 ++ L +I D+ + T RE +T I++G ++ EI+ Sbjct: 121 GHTVLQDVVLDKIKSSLNAATERESKADM-----TQFTERETSIMTLIAKGLSNKEISKT 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L IS TV NYI+SI+ KT + R+ Y Sbjct: 176 LFISEGTVANYISSILSKTGLEHRTQIAIY 205 >gi|315504459|ref|YP_004083346.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411078|gb|ADU09195.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 978 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA A LT RE E L ++EG ++ IA L IS T + +++ I+ Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R A A A R ++ Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965 >gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 210 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 78/199 (39%), Gaps = 22/199 (11%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107 +Y+G + ++ + Q + I+ D P ++ + + E D Y +++ + Sbjct: 22 DYLGFRGYDVLTAENGQ--RALGILEQDIPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 78 Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 LF + + + Y F+ + + + + W+ Sbjct: 79 VPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTSRWKEH- 131 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 V + D +LT E++ + +++ G + EIA L +S+ TV ++++++ Sbjct: 132 -QTKVGEPGSRIQVPF--DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 188 Query: 225 MRKTATKTRSGAIAYAVRN 243 + KT R+ +A+ N Sbjct: 189 LGKTNLHNRTELARWAIEN 207 >gi|330470082|ref|YP_004407825.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813053|gb|AEB47225.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 225 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE++ L ++EG+++ EI L +S +TV + + RK + R+ A+A R Sbjct: 162 IGLTERELQVLLGMAEGRSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRA 221 Query: 244 NIV 246 +V Sbjct: 222 GLV 224 >gi|300088572|ref|YP_003759094.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528305|gb|ADJ26773.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 220 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 46/104 (44%) Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 +G + G + ++ L Q++ LT RE+E LT I+ G Sbjct: 114 MVGAIRAVASGDTSVTPQIDRSLLEQIQQSDQQFQNIAEMESAEPLTAREIEILTLIAAG 173 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 K + EIA L I TV N+I I K K+R AI+Y +R N Sbjct: 174 KGNREIAETLFIEEKTVKNHINVIYSKLRIKSRYEAISYMLRQN 217 >gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 208 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E LT I+ G T+ EIA L +S +TV + +++ RK + R+ A+ A R + Sbjct: 147 LSEREQEVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQRIGL 206 Query: 246 V 246 + Sbjct: 207 L 207 >gi|260597411|ref|YP_003209982.1| DNA-binding transcriptional regulator CsgD [Cronobacter turicensis z3032] gi|260216588|emb|CBA29849.1| Probable csgAB operon transcriptional regulatory protein [Cronobacter turicensis z3032] Length = 215 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+ +A + Sbjct: 155 LTHREKEILNKLRFGASNMEIARSLFISENTVKTHLYNLFKKLAVKNRTQAVTWANHH 212 >gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 160 WEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + L+A +A + G+ L+ RE E L I G+ + EIA LG+S +TV+ Sbjct: 143 ARLNLVARVKAISNQPAAAEPNGEFIHLSRRETEVLKEIGTGQRNGEIARKLGLSEHTVS 202 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 +Y+ +I +K + +R+ A A+R +V Sbjct: 203 DYVKAIYQKLSVSSRAEATREAIRRGLV 230 >gi|218660891|ref|ZP_03516821.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 65 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E + ++ GKT+ EI ILGIS TVN +I++ K + +A A+RN I+ Sbjct: 5 TPREREIIGCMAAGKTAAEIGAILGISPITVNTHISNAKAKLGVFKETALVAAALRNGII 64 >gi|254382064|ref|ZP_04997426.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340971|gb|EDX21937.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 222 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170 V+ L + D R L V + G LL P R ++ + A A Sbjct: 90 VYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAATARPAGGPA 149 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + +V LT RE E L + G+++ EIA L +S +TV +++ +++ K Sbjct: 150 LSAERLEV-------LTARERETLLHLGRGRSNAEIAAELTVSEHTVKSHVGNVLAKLGL 202 Query: 231 KTRSGAIAYAVRNNIV 246 + R A+ A ++ Sbjct: 203 RDRIQAVICAYETGLI 218 >gi|317499014|ref|ZP_07957295.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893664|gb|EFV15865.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 222 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 6/173 (3%) Query: 78 VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V D P ++ + + E D + ++ ++ + T ++ + + Y Sbjct: 43 VRKDKPDVILMDVRMPEMDGVQCTQIIKEQYPDVKIIILTTFDDDEYVYNALKHGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + + G +I + ++ + A +H E+T E Sbjct: 103 LKGISMDELEKAIKTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEITEAEW 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E + + G ++ EI+ L +S TV NY+++I+ K + R+ + V++ Sbjct: 163 EIIKLVGRGLSNKEISAELSLSEGTVRNYLSTILNKLDLRDRTQLAIWEVQSG 215 >gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 221 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 3/123 (2%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + + + + + +I L A A + + + Sbjct: 96 RAGASGFLLKSLAPEELVAAMRVAARGDALIDPSVTRR---LVAKFATVLEPAAAEPPEL 152 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++ ++ EIA L + TV +++ ++ K R A+ YA R+ Sbjct: 153 ARLTSREREVLLLLAGACSNAEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRH 212 Query: 244 NIV 246 +V Sbjct: 213 KLV 215 >gi|297161212|gb|ADI10924.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 3/195 (1%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 E VG + ++ +++ D +V D +A + L+ + F Sbjct: 29 EVVGEASDGAEAVEIARDRGAD-VVLMDIRMPGTDGLAATRMITQDPRLEDVRVVMLTTF 87 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQAN 171 + + + + + + + ++ + LA Sbjct: 88 EVDEYVVESLRAGASGFLGKGAEPDELLAAIRIAAAGEALLSPVATKGLIAKFLAQGGGR 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +S + LTGRE E L ++ G ++DEIA L +S TV ++ M K + Sbjct: 148 DGESGAYDAARLDALTGREREVLVQVAGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGAR 207 Query: 232 TRSGAIAYAVRNNIV 246 R+ + + +V Sbjct: 208 DRAQLVVISYETGLV 222 >gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 205 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 13/142 (9%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L F E + Y D I G+ ++ D Sbjct: 77 PAVLILTTFDRDAEVLGAIEAGAAGYLLKDVDPEVIVEGIRRAAAGDVVLAPD------- 129 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LAA +S LT RE+E L ++ G T+ EIA L ++ TV +++A I Sbjct: 130 LAARVLKGMRSPLPR------LTDREIEVLRHLARGATNREIARTLFVTEATVKSHLAHI 183 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K +RS AI A ++ Sbjct: 184 FTKLDVDSRSRAIHVAQETGLI 205 >gi|163747813|ref|ZP_02155152.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161378921|gb|EDQ03351.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 186 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ELT RE++ LT ++EGK + IA LG+S +TV +I ++ K R+ A + Sbjct: 120 ELTNREMQVLTCVAEGKQNKVIANSLGLSEHTVKLHIHHVISKLGVNNRTEAAVW 174 >gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 15/135 (11%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + D + L + G + P + A + + Sbjct: 91 FEAIRAGAAGYLLKDMAHSDLVSAIRGTVSGKAYVDP-------------NVTARLLSQV 137 Query: 173 FKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 S + LT RE+ L I+ G T+ IA L +S TV N++++I+ K Sbjct: 138 ATSRNQPPASQLTGRLTERELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDV 197 Query: 231 KTRSGAIAYAVRNNI 245 R+ A AV + + Sbjct: 198 ADRTQAALLAVEHGL 212 >gi|52424333|ref|YP_087470.1| CitB protein [Mannheimia succiniciproducens MBEL55E] gi|52306385|gb|AAU36885.1| CitB protein [Mannheimia succiniciproducens MBEL55E] Length = 226 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 12/131 (9%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQ----- 169 + G+D R LT ++ I ++ +L+D L +I +A + Sbjct: 88 VLRQEGVDARIVILTVSDSKADIYALIDAGADGYLLKDTEPDTLLAQIKQIAQGEIILSD 147 Query: 170 --ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 N+ LT RE++ L I+ G ++ +IA L IS TV +I +++RK Sbjct: 148 SIKNLLVERHPAHEPIHALTDREMDVLQLIATGLSNKQIAAQLFISEETVKVHIRNLLRK 207 Query: 228 TATKTRSGAIA 238 +R A Sbjct: 208 LNVHSRVAATV 218 >gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + L V G + P + +L Y+ Sbjct: 97 VLEAIKAGASGYLVKSASAAELIEAVRATAAGQPVFTPGLAGL---------VLGEYRRM 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L +++G ++ +IA LG+S TV N++ + +RK Sbjct: 148 ASAPARPDEPHRPALTERETEVLRMVAKGLSAKQIAARLGLSHRTVENHVQATLRKLQLA 207 Query: 232 TRSGAIAYAVRNNI 245 R YA+ + Sbjct: 208 NRVELTRYAIEQGL 221 >gi|288921284|ref|ZP_06415567.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347315|gb|EFC81609.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 217 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 46/88 (52%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + ++ ++ G +T RE E L ++EG +S +IA IL IS TV Sbjct: 128 LYPGAVNALIRDHLERAAAGDPGTGRVITDREEEVLKLVAEGHSSRQIADILFISVKTVE 187 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +++++K + R YA+R ++ Sbjct: 188 RHRSNLLQKLGLRDRLELTRYAIRAGLI 215 >gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142] Length = 90 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 41/67 (61%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+GRE++ L +S G T+ EIA L IS+ TV+N+I++I+ KT T+ R + Sbjct: 4 AKFQNPVSLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELV 63 Query: 238 AYAVRNN 244 +A++ Sbjct: 64 RWALQWG 70 >gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 216 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 8/164 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143 V+ + + +++R + T + A + + T + ++ Sbjct: 55 VQMPVMDGLESTAEIVRRGAAGAVLILTTFDRDDFLFQALAAGASGFLLKTAEAEQLIDA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKT 202 + L ++ + + ++ + EL TGRE+E L ++ G + Sbjct: 115 VTALAGGDGLLSPEVTRRV----IERSVRSPESTTPAAPELELLTGRELEVLHLVAGGLS 170 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L + TV ++++++ K + R + +A +N +V Sbjct: 171 NSEIAGRLFVGEATVKTHVSNLLTKLDIRDRIHVVIFAYQNGVV 214 >gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] Length = 253 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 140 IRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 +R L P G ++ +R+ ++ + + G++ LT RE E L I+ Sbjct: 131 VRGYLSKTLPAGELVSALERVHAGEVIVSAEVGSGPIAGEWPGREEGLTPREAEVLALIT 190 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +G ++++IA +S N+V +YI + RK +RS A+ + VR+ Sbjct: 191 QGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRSQAVLWGVRHG 236 >gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 241 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHW 180 P ++TF R + R +L+ L+A Y A+ + ++ Sbjct: 120 PIHDSRGPVAAVTFAADERRPTFQRCIEQNRSVLQ-------LMAMYFHAHARRRLSINR 172 Query: 181 GKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 D L+ RE ECL W ++GK++ EI +L ISR T ++ + K +T A+A Sbjct: 173 VIDGVALSPREFECLEWAAQGKSAWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVAK 232 >gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8] gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8] Length = 236 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQ 169 + L T + ++ + + G + P RII R G A Sbjct: 103 ILAALRAGATGYVLKERDDLEVSLSIRSVLRGGAPIDPFVARRIIEELRPRRTGPSDAAA 162 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + +S D L+ RE + L +SEG + EIA L +SR TV ++ I RK A Sbjct: 163 GDPAESADSGET----LSPRESQILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLA 218 Query: 230 TKTRSGAIAYAVRNNIV 246 +R+ AI A ++ Sbjct: 219 VSSRTRAIHAARTRGLL 235 >gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 213 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 +++ + M LT RE++ L +++GKT+ EI L +S T Sbjct: 122 EQIMDAKTTEKVLEYMRNKNPNRENPTDILTNREMDILDLVAKGKTNSEIGEELHLSEKT 181 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243 V N ++ I+ K R+ A AY V Sbjct: 182 VRNQLSRILNKLDLNNRTQAAAYYVSQ 208 >gi|56459293|ref|YP_154574.1| transcriptional regulator NarL [Idiomarina loihiensis L2TR] gi|56178303|gb|AAV81025.1| Nitrate/nitrite response regulator (CheY, HTH domain) [Idiomarina loihiensis L2TR] Length = 219 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 13/130 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + D L + R G M+L IL L + Q + Sbjct: 94 VVAAITNGADGYLLKDMEPELLLEQIHRAVTGKMVLSEAITEILATALRQPTQSTTSQLS 153 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E L+ I++G ++ IA L IS TV ++ +++K + Sbjct: 154 -------------NLTNREHEILSLIAKGMSNKVIARELDISDGTVKVHVKHLLKKLGLR 200 Query: 232 TRSGAIAYAV 241 +R A + V Sbjct: 201 SRVEAAVWMV 210 >gi|297539450|ref|YP_003675219.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258797|gb|ADI30642.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 275 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE E + W+ GKT+ EI +IL IS TV ++ I +K R+ A Sbjct: 215 LSDRESEIMLWVKMGKTNHEIGMILNISAFTVKKHLQRIFKKLDVLNRAQAATK 268 >gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx, regulates anaerobic respiration and fermentation (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424] gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424] Length = 217 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 6/162 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVF---HTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + LS + +++ + V E G Y + + G Sbjct: 56 LNMPGLSGLEALQLLVEDLPQTAVIVLTVSEEAEELAAALRGGARGYLIKNIETEALIAG 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + +I L+A ++A + + + LT RE E + ++ G+++ Sbjct: 116 IRRAAAGEPVISDS--MTAKLVAQFRAPV-PAVALRQDDAPRLTAREREIVQGLARGESN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA LG++ +TV ++ +I++K +R YAV + + Sbjct: 173 KEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214 >gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 254 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 79/228 (34%), Gaps = 22/228 (9%) Query: 38 PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97 + + + + + G F LV + + ++ +++P V + + + Sbjct: 24 AAESSAQLSEVIAGAIQQFGFRWFALVDDGDLYKHRSGCMMLTNYPSSWVDEVISARLYR 83 Query: 98 YYNV-LQRPTELFCPVFHTLPENITP------------PAGMDNRY-CSLTFDVARIRIG 143 V + +P+ I P G+ Y R Sbjct: 84 DDPVHAASIRSPTGLCWDRIPDVIAPTRAQLSVLERGRAHGLTTGYTVPFRIPGERGAFF 143 Query: 144 LM-----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + F I L I A ++ H LT R+++CL I+ Sbjct: 144 SIARPKDRSFTYSEAISAQLLGGIAFEAGRALVKGRAVKAHGA---PLTPRQIDCLRLIA 200 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT E+ ILG+S +T++ Y+ + R+ KTRS + A R+ V Sbjct: 201 AGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGYV 248 >gi|21244146|ref|NP_643728.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109777|gb|AAM38264.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 923 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 839 SGDDDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897 Query: 235 GAIAYAVRNNIV 246 GA+A A++ ++ Sbjct: 898 GALAQALQRGLL 909 >gi|124266085|ref|YP_001020089.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258860|gb|ABM93854.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 896 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 14/241 (5%) Query: 11 VLNREDEQRTSFVSHL-----PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65 VL E ++ T+ + P + ++ +R+ + L+ R Sbjct: 664 VLAGELDRATALAKRIAPVCPPLNPQWIYMADDMEGEAFGRIRLAIAHHDHALASQLIAR 723 Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125 Q ++ + + F+ + + + L++ +L P Sbjct: 724 ERARQTGRVYRDI-RLYVFEALMLHDKGSPNGAHRSLRKALQLARP-------GRYVRCF 775 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 +D ++ + L DR + LLAA ++ + H D Sbjct: 776 LDEGRAIVSMLREEYQHFLQSAADGQAPADPDRDFIELLLAASGTDLGQPRGRHHLTD-P 834 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L +++ G + EIA L +S NTV ++ +I K R AI A + Sbjct: 835 LSEREKEMLQFLANGVANKEIASRLFVSENTVKFHLKNIYSKLGVSGRVQAINAARTLRL 894 Query: 246 V 246 V Sbjct: 895 V 895 >gi|327189418|gb|EGE56584.1| LuxR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 65 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E + W++ GKT+ EI IL IS TVN +IA+ K + +A A+RN I+ Sbjct: 5 TPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGVFKETALVAEALRNGII 64 >gi|239978487|ref|ZP_04701011.1| two component system response regulator [Streptomyces albus J1074] gi|291450385|ref|ZP_06589775.1| two component system response regulator [Streptomyces albus J1074] gi|291353334|gb|EFE80236.1| two component system response regulator [Streptomyces albus J1074] Length = 222 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 6/172 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + L+ + F + Sbjct: 49 DVVLMDIRMPGTDGLEAARRITADPRLETVRVVILTTFDLDEYVYRALREGVTGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREVECL 194 + + + + +I L+A + + D LT RE E L Sbjct: 109 EPEELAHAIRVAARGDALISPSVTRR--LIAEFAGRVAPPPPDPRLNA---LTDREREVL 163 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G T+D IA L +S T +++ +M K + RS + A + +V Sbjct: 164 RLVAGGLTNDRIAATLVVSPATAKTHVSRVMTKLGVRDRSQLVVLAYESGLV 215 >gi|256395654|ref|YP_003117218.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361880|gb|ACU75377.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 14/183 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPV---FHTLPENITPPAGMDNR 129 + ++ P ++ + + D ++ R V F + Sbjct: 43 ELAAALQPAIVLMDVRMPRLDGIAATRQIIARALPTRVIVLTTFDLDDYAFEALRAGASG 102 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185 + + + + +I LL AY D G Sbjct: 103 FLLKNSRPDDLAAAIRAVAAGDAVIAPSTTRR--LLDAYADRFTAPSDPPAGASDPSAPL 160 Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E + G T+ EIA L +S TV ++ I+ K A + R A+ YA Sbjct: 161 ESLTRREREVFDQMVSGLTNKEIAQQLALSETTVKTHVVRILAKLAVRDRVQAVIYAYET 220 Query: 244 NIV 246 + Sbjct: 221 GYI 223 >gi|295836038|ref|ZP_06822971.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197695120|gb|EDY42053.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 223 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL---TFD 136 P +V + + D + +R V T E+ + C Sbjct: 49 PHVMVMDIRMPGMDGIEATRRITERGDGPKVLVLTTFDEDDHVYGALRAGACGFLVKDMA 108 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + ++ +I + A++A V G LT RE E L Sbjct: 109 LDAILDAVRVVAAGDALIAPTVTRRLISEFAHRAEAEPPTPVPTG----LTNREREVLVL 164 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +G ++ E+A + IS T Y++ ++ K + R + A +V Sbjct: 165 VGQGLSNTELAHHMHISTATAKTYVSRLLTKLGARDRVQLVITAYEMKLV 214 >gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 212 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 70/198 (35%), Gaps = 21/198 (10%) Query: 54 EYVGASHFLLV-------RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106 +Y+ + ++ D+ ++Q++ ++ D + A EK + Sbjct: 27 DYLEFRGYEVITAENGREALDILEQQQIPDMIICDVMMPEMDGYAFVEKLRDDARTSWIP 86 Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 LF + I + Y F+ + + + Sbjct: 87 FLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLSRVVPPS----------- 135 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + + ELT E++ + +++G + +IA L +S+ T+ +++++++ Sbjct: 136 ---LSTTSGPTIQVPSHVELTPTELKVIQLVAQGMANRDIADKLNVSQRTIESHVSNMLN 192 Query: 227 KTATKTRSGAIAYAVRNN 244 KT R+ +A+ + Sbjct: 193 KTNLHNRTELARWAIESK 210 >gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 235 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L + G+++ EIAV G+S +TV N++ +I++K R YA Sbjct: 172 PLTAREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLTRYAYEQG 231 Query: 245 IV 246 ++ Sbjct: 232 ML 233 >gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385] gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4] Length = 224 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA +++ + +LT RE + + + G ++ EIA L Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|325263734|ref|ZP_08130467.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] gi|324030772|gb|EGB92054.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5] Length = 240 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 11/157 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 P L +A +E YY ++ +P H E++ + + I Sbjct: 91 PLGLPLDIADTETVNYYIIITQPR-------HQNTEDLFTSFDAIESISADPGTMDFHEI 143 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 +++ I E+ A + ++ ELT RE E + +S G + Sbjct: 144 ANLIVSSFDIIFSLMSTNEL----AQTLHKKDKIKINKDALSELTSREREIIHLVSIGMS 199 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + +IA L IS +TV +I++I++K + R+ Y Sbjct: 200 NQQIAGQLQISEHTVKAHISNILKKLSLNNRTQLAIY 236 >gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 211 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++ RE E L ++G +S EIA L IS TV ++ASI K K ++ A+ A+R Sbjct: 143 PISPREREVLVQAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYG 202 Query: 245 IV 246 +V Sbjct: 203 LV 204 >gi|291085584|ref|ZP_06571117.1| putative csgAB operon transcriptional regulatory protein [Citrobacter youngae ATCC 29220] gi|291071350|gb|EFE09459.1| putative csgAB operon transcriptional regulatory protein [Citrobacter youngae ATCC 29220] Length = 159 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N T D R+ GL + + LA+Y +Y + + LT Sbjct: 48 NGVFYATEDEQRVVSGLQGVLRGECYFSQK-------LASYLITHSGNYRYNSTESAILT 100 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A Sbjct: 101 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 153 >gi|290962896|ref|YP_003494078.1| two-component regulator [Streptomyces scabiei 87.22] gi|260652422|emb|CBG75555.1| putative two-component regulator [Streptomyces scabiei 87.22] Length = 222 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 11/173 (6%) Query: 83 PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + D + R L F + + Sbjct: 48 PDVVLMDIRMPGMDGLEATRRIVAAGGRTRVLIVTTFDLDEYAYDGLRAGASGFLLKDAR 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVEC 193 + G+ + ++ LL AY + D L+ RE E Sbjct: 108 PEELVAGIHAVATGDAVVAPSLTRR--LLDAYAHQVLAPSGTAPAADPRLESLSEREHEV 165 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I +G T+ EIA L ++ +TV ++ ++ K + R A+ A +V Sbjct: 166 LVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVITAYDAGLV 218 >gi|225025240|ref|ZP_03714432.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC 23834] gi|224941998|gb|EEG23207.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC 23834] Length = 215 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 21/203 (10%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 L+ LF+ + L +++ ++ F++V + + +++ ++ PV + P Sbjct: 10 LVDDHPLFR-RGLSFLLAQEYGFEIVAEATDGLEGVKLARFHRPDLVLLDVEMPVMNG-P 67 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS 175 E + L ++ L IL++ + + A QA + Sbjct: 68 EALAQMLDFQPGLPVLMLTISEDADNLKKCLELGARGYILKNADTDFLVEAIRQAVAGQQ 127 Query: 176 -------------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 H LT RE + L +++ G ++ IA + +S NTV ++ Sbjct: 128 TVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMFLSENTVKAHMQ 187 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 +I RK R A YA + Sbjct: 188 NIFRKLNIDNRVRAAVYARELGL 210 >gi|146281277|ref|YP_001171430.1| two-component response regulator NarL [Pseudomonas stutzeri A1501] gi|145569482|gb|ABP78588.1| two-component response regulator NarL [Pseudomonas stutzeri A1501] gi|327479436|gb|AEA82746.1| two-component response regulator NarL [Pseudomonas stutzeri DSM 4166] Length = 202 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D L + G M L P+ +L + + Sbjct: 79 VLEALRNGADGYLLKDMDAEELIEQIRIAATGRMALSPELTQVLAEAIR----------- 127 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE E L I++G+++ IA LGI+ TV ++ +++ K + Sbjct: 128 -VRPKPTGQVQFSSLTKREKEVLRQIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLR 186 Query: 232 TRSGAIAYAVRN 243 +R A + + N Sbjct: 187 SRVEAAVWVLEN 198 >gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 162 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 161 EIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + + A ++ D+ +LT RE++ L I G ++ EIA L IS TV + Sbjct: 73 DPAVTARVLNTYRRAPDMPRALTSVDLTTRELDVLRLIGRGYSNAEIATELHISEVTVKS 132 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I I K + R+ AI Y+ + IV Sbjct: 133 HIGHIFLKLELRDRAAAIVYSYDHGIV 159 >gi|312196962|ref|YP_004017023.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228298|gb|ADP81153.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 644 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 F LT RE E LT ++EG T+ ++A L IS T N ++++I K R+ Sbjct: 581 FSLTAREQEVLTLLAEGLTNAQLAAELFISERTANRHVSNIYTKLGVHNRTQ 632 >gi|261409608|ref|YP_003245849.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286071|gb|ACX68042.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 216 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 12/180 (6%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 L + +V D +R + + +R ++ + T ++ + Sbjct: 42 LLMDGLHADVVLMD-----IRMPVCDGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALR 96 Query: 128 NR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKD 183 N Y RI G+ + +I D ++ G+L + +S ++ + Sbjct: 97 NGASGYLLKNIPPDRIIQGIKTVHDGNMLIHPDIARKLTGMLRPTPQPVPRSAEL---EQ 153 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E + I+EG ++ EIA L +S TV NY+ I+ K + R+ + ++ Sbjct: 154 FGLTPAEKRVVALIAEGLSNKEIAAQLYLSEGTVKNYVTEILGKLNLRDRTQIAIFYLKK 213 >gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli] Length = 241 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I Sbjct: 179 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 238 Query: 246 V 246 + Sbjct: 239 I 239 >gi|38234803|ref|NP_940570.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38201067|emb|CAE50791.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 212 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 P ++ R G A + LT RE+E L ++ G ++ +I Sbjct: 114 APPEELLAAVRSAAEGDTALSPTVANRLMSRVRAPRNSLTPRELEVLKLVAGGSSNRDIG 173 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S TV +++ I K ++R+ A+A A ++ Sbjct: 174 RRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212 >gi|297516127|ref|ZP_06934513.1| DNA-binding transcriptional regulator CsgD [Escherichia coli OP50] Length = 114 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 33 LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 92 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 93 FKKIAVKNRTQAVSWA 108 >gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 5/156 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L+ + + + P L V + + Y + T D + ++ + + Sbjct: 66 GLAVLEAFRGIAGAPAFLALSVSDAAEDVVPMVRAGARGYVTKTIDTPALLDAIVRV-RQ 124 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G RL L QA + + + +LT RE E L ++ G IA L Sbjct: 125 GEPYFSPRLAAFVL----QAFSAPAEEQADDELDQLTPREREVLHHLARGYAYKRIAARL 180 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GIS TV ++ S++RK +R +A +V Sbjct: 181 GISPRTVETHVGSVLRKLQLSSRHELSHWAASRGLV 216 >gi|134103684|ref|YP_001109345.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133916307|emb|CAM06420.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 218 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + G + + + + ++ LL + Sbjct: 83 FDLDEYALAALRGGAGGFLLKDTPPDGLVTAVRSVASGDAVVSPSVTRR--LLDRFLGGD 140 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D LT RE E L +++G ++ E+A L +S T+ ++ I+ K + Sbjct: 141 GGALRDPGVLDV-LTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRD 199 Query: 233 RSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 200 RVQAVVLAYETGLV 213 >gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 231 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 3/143 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + L EN+ R + + G + R+ + Sbjct: 87 PVRVLILARADLEENVLGALCAGARGFLPPEVSSTELAAAIRSVAAGDAVAAPRILD--R 144 Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L A++ + + LTGRE E L ++ G+++ EIA L +S TV ++ + Sbjct: 145 LLNQLADLLPDPAATPSRLLDSLTGREREVLVQVARGRSNAEIAQELSVSETTVKTHVGN 204 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K + R A+ A + ++ Sbjct: 205 VLTKLRLRDRVQAVVLAYESGLI 227 >gi|298248387|ref|ZP_06972192.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551046|gb|EFH84912.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE E L+ +++G + EIA L +S TV N+++++ K R AI A Sbjct: 154 ELTEREREILSLLAQGLNNAEIAQRLVLSLKTVRNHLSNVFNKLQVADRVQAIIRAREAG 213 Query: 245 I 245 + Sbjct: 214 L 214 >gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] Length = 222 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----------RLWEIG--LLAAYQAN 171 G+D R LT AR + ++ +L+D RL G +++ A+ Sbjct: 88 DGVDARIIVLTVSDARNDVYALIDAGADGYLLKDSEPEQLLTSIRLAAEGENVISDAVAD 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S +LT RE++ L ++ G ++ ++AV L IS TV +I +++RK + Sbjct: 148 YLSSRSEQHDPFADLTERELDVLQEVARGMSNKQVAVQLHISEETVKVHIRNMLRKLDVR 207 Query: 232 TRSGAIAYAVRNN 244 +R A + + Sbjct: 208 SRVAATVMYLEHK 220 >gi|302869068|ref|YP_003837705.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302571927|gb|ADL48129.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 978 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA A LT RE E L ++EG ++ IA L IS T + +++ I+ Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R A A A R ++ Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965 >gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1] gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1] Length = 74 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A Sbjct: 3 DNEFTHKPLLTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQA 62 Query: 237 IAYAVRNN 244 + +R Sbjct: 63 VVELLRMG 70 >gi|330502102|ref|YP_004378971.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328916388|gb|AEB57219.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 868 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 9/100 (9%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 LL + L RL+E + + L+ RE+ L I++G ++ E Sbjct: 775 LLPGEAGQSLHQRLFEPA---------PRLDEPASAGTALLSSRELAVLQLIAQGYSNQE 825 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L IS +TV + I K + R+ A+A A + Sbjct: 826 IADRLFISLHTVKTHARRINVKLGVQRRTQAVAMAKAQGL 865 >gi|302526068|ref|ZP_07278410.1| two component system DNA binding response regulator [Streptomyces sp. AA4] gi|302434963|gb|EFL06779.1| two component system DNA binding response regulator [Streptomyces sp. AA4] Length = 205 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +LA A+ + L+ RE+E L +++G ++ EI+ L +S+ TV +++ Sbjct: 123 VLAPAVAHRLM--NRMRTPAAALSPREIEVLGLVADGLSNLEISKRLFLSQATVKSHLVH 180 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+A ++ Sbjct: 181 IYAKLGVDSRTAAVAAGKARGLI 203 >gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 163 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 161 EIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + + A ++ D+ +LT RE++ L I G ++ EIA L IS TV + Sbjct: 74 DPAVTARVLNTYRRAPDMPRALTSVDLTTRELDVLRLIGRGYSNAEIATELHISEVTVKS 133 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I I K + R+ AI Y+ + IV Sbjct: 134 HIGHIFLKLELRDRAAAIVYSYDHGIV 160 >gi|21222754|ref|NP_628533.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|10129764|emb|CAC08319.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 226 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 L + + + E+ V T E+I G R + + Sbjct: 69 LDGIETTRRLTEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNAGRQDITRAIRAAG 128 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIA 207 G+ +L DR + LLA + + + +LT RE E L I +G ++ IA Sbjct: 129 AGQSVL-DREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLSNRGIA 187 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV +I ++ K + R+ A+ A+ + Sbjct: 188 EKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225 >gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] Length = 217 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LLAA + + + LT RE E L ISEGKT+ IA L IS TV ++ Sbjct: 133 ALLAAVLTPKAAAPPEYHLVE-RLTDREREVLRLISEGKTNKAIARELVISPATVKAHVE 191 Query: 223 SIMRKTATKTRSGAIAYAVR 242 + K R+ A VR Sbjct: 192 RCLAKLGAADRTQAAVMMVR 211 >gi|332521837|ref|ZP_08398286.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] gi|332042509|gb|EGI78711.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] Length = 453 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + EI L A KS L+ RE E L IS GKT+ EIA+ L IS NTV Sbjct: 366 IEEIKELTATVHKQ-KSNKKEIETTQLLSFRETEILQLISLGKTNKEIALELHISENTVK 424 Query: 219 NYIASIMRKTATKTR 233 ++ +I K K+R Sbjct: 425 YHVKNIYTKLNIKSR 439 >gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 211 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 16/197 (8%) Query: 57 GASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELF 109 G +L R + + +++ P + + + D V Q R EL Sbjct: 17 GFKSYLENRENIKLVGEASDGESALNVIKDQLPDVALIDIRMPGIDGVTLVRQIRQEELK 76 Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169 + R G +L +LR Sbjct: 77 VACLMLTSYDAQQYVLASLRA---------GAKGYILKTASPEELLRAIEIVASQGVYLD 127 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + + + L+ RE E L G++S EIA L IS TV ++ASI K Sbjct: 128 KEVAAAVEEPGFTPESLSPREREVLLLAGRGESSKEIASKLYISERTVQTHLASIYDKLG 187 Query: 230 TKTRSGAIAYAVRNNIV 246 + ++ A+ A++ +V Sbjct: 188 ARNKTEALLLALKYGVV 204 >gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341] gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341] Length = 224 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA +++ + +LT RE + + + G ++ EIA L Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] Length = 214 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA +++ + +LT RE + + + G ++ EIA L Sbjct: 115 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 174 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 175 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 207 >gi|184201310|ref|YP_001855517.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183581540|dbj|BAG30011.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 270 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE E LT ++ G +++EIA L + R TV +++++++KT + R A+ Sbjct: 201 AAASPAGLTARETEVLTAMARGLSNEEIARELVVGRATVKTHVSNVLQKTGARDRVHAVI 260 Query: 239 YAVRNNI 245 +A + + Sbjct: 261 WAFEHGL 267 >gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 224 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA +++ + +LT RE + + + G ++ EIA L Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|154251588|ref|YP_001412412.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155538|gb|ABS62755.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 213 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 39/76 (51%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 G+ LT RE++ L +++G+++ IA L I+ +TV ++ S+ K Sbjct: 137 RRLAQDARTSGQKATLTSRELQVLECLADGQSNKMIAQTLSITEDTVKAHLKSLYEKLGA 196 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+A ++R ++ Sbjct: 197 SDRAHAVAISLRQQLI 212 >gi|77461110|ref|YP_350617.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385113|gb|ABA76626.1| LuxR family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + + GKT+ EI IL ++ TVN +I +++ K + AI A + Sbjct: 175 LSTRELEIVRLCAYGKTAWEIGQILNVAERTVNYHIKNLIVKLNACNKMSAIVKASKLGF 234 Query: 246 V 246 + Sbjct: 235 L 235 >gi|294667407|ref|ZP_06732625.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602848|gb|EFF46281.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 923 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 839 SGDDDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897 Query: 235 GAIAYAVRNNIV 246 GA+A A++ ++ Sbjct: 898 GALAQALQRGLL 909 >gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] Length = 239 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V H + + M + + + + + ++L+ R + R ++ Q + Sbjct: 110 VLHDADNQLAMLSLMVDDHSLSIVEQNQGALQMLLINAHERFMTGQRQLQV------QQH 163 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 KS ++ + + RE E L W S GKT EIA+ILGI TV +I ++++K Sbjct: 164 NIKSNNM----ENIFSARENEILYWASMGKTYQEIALILGIKSGTVKFHIGNVVKKLGVL 219 Query: 232 TRSGAIAYAVRNNIV 246 AI V ++ Sbjct: 220 NAKHAIRLGVELQLI 234 >gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA A+ D LT RE+E L + EG ++ +I+ L +S+ TV +++ Sbjct: 127 SALAPAVAHRLM--DRMRTPAQALTRRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLV 184 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+A A ++ Sbjct: 185 HIYAKLGVDSRTSAVAAATARRLI 208 >gi|194438019|ref|ZP_03070112.1| transcriptional regulator CsgD [Escherichia coli 101-1] gi|194422955|gb|EDX38949.1| transcriptional regulator CsgD [Escherichia coli 101-1] Length = 190 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 109 LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 169 FKKIAVKNRTQAVSWA 184 >gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136] Length = 220 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 11/159 (6%) Query: 91 ALSEKDKYYNVLQRPTELF---CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 +S +R + VF + Y T I + Sbjct: 70 GMSGLQGIRLFRERSPDTLVIILTVFEDDEKIFDAICAGAAGYLLKTAGADAIVSAIREA 129 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 G + +A MF D+ L+ RE E L + +G EIA Sbjct: 130 LAGGSPMNP-------RIARRVLEMFSKL-APKTHDYGLSAREKEILDLMVKGLIKKEIA 181 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +TV+ Y+ I K TR+GA+A A++ ++ Sbjct: 182 DRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALKERLI 220 >gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 230 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++EG ++ EIA +S TV ++ I+ K + R A+ YA Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|220932886|ref|YP_002509794.1| regulatory protein LuxR [Halothermothrix orenii H 168] gi|219994196|gb|ACL70799.1| regulatory protein LuxR [Halothermothrix orenii H 168] Length = 887 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L I G ++ EIA L I+ T +I++I K R+ AI A++ Sbjct: 817 PLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIKKALQLE 876 Query: 245 IV 246 ++ Sbjct: 877 LI 878 >gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. B076] Length = 189 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 21/189 (11%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-------- 130 S++P ++ S +++ P F N D+ Sbjct: 1 MSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQL 60 Query: 131 -CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFKSYDVHW- 180 TF D + + L L + + R+ E L + + K+ H Sbjct: 61 SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 120 Query: 181 ---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +L+ RE L W++ GK+ EIA I IS TV +++++ K +T A+ Sbjct: 121 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 180 Query: 238 AYAVRNNIV 246 A+ +V Sbjct: 181 YKAINIGMV 189 >gi|315093205|gb|EFT65181.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 218 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 67/176 (38%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + GL + ++ + + + +Q + V K +LT RE Sbjct: 100 MLKNAEAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ +IA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLVARGLSNAQIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|300788286|ref|YP_003768577.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797800|gb|ADJ48175.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 195 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 L A+ + KD T RE E + ++EG ++ EIA + +++ TV ++ Sbjct: 101 AHRLLRLIADRRQGGGWSAFKDDPFTPREREVVECLAEGMSNTEIAARMSMAQRTVKYHV 160 Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244 + ++ K + R+ A+A A + Sbjct: 161 SHVLAKLGARDRAHAVALAYGSG 183 >gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 226 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 I E+ L + +S ++ LT RE + L I G+++ EIA LG Sbjct: 130 EAIYAAARGEVRLHPEAAKRLLRSVRTSDMRE-ALTARETDILRHIGRGESNKEIAAALG 188 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV +++ ++ K +R+ A +A++ +V Sbjct: 189 LSELTVKTHVSRLLSKLGLASRTQAALFALKEGLV 223 >gi|271963445|ref|YP_003337641.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506620|gb|ACZ84898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 9/219 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ D + A+ A + V + ++ +V S P ++ + + Sbjct: 1 MIRVLLADDEAMIRAGVRAILA---ADPEIEVVAEAGDGREAIDLVLSHRPDVVLLDIRM 57 Query: 93 SEKDK--YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 D L+R V T + I G L R + + Sbjct: 58 PRMDGLAAVAELRRVAPGTAVVMLTTFGEDDYIARALGEGAGGFLLKSGDPRELLAGIHA 117 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 +G L R+ ++ + LT RE + L + EG ++ +IA Sbjct: 118 VAEGAAYLSPRVAHR-VITQLTGGRMTRVVAAREQVAALTPRERDVLALVGEGLSNGQIA 176 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + TV ++++I+ + + R A A ++ Sbjct: 177 RRLYLVEGTVKAHVSAILTRLGARNRVQAAILAHEAGLL 215 >gi|227548560|ref|ZP_03978609.1| two-component response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079389|gb|EEI17352.1| two-component response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 201 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 20/167 (11%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVAR 139 +V + + E D V +R P + T + + Y Sbjct: 49 VVTDIQMPEIDG-IEVTRRLVAAGGPPVLILTTYDTQADVLAAVEAGALGYMLKDAPEPE 107 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + ++ R++ G+LA + D L+ RE+E L + Sbjct: 108 LHAAVLSAAGGKRVLSP---QIAGVLAERVMH----------PDEALSTREIEILQALQT 154 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G ++ EIA L IS TV ++ I K R+ A+ A I+ Sbjct: 155 GASNREIASSLFISEATVKTHLIHIYSKLGVDNRTAAVDKARERRII 201 >gi|111021467|ref|YP_704439.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820997|gb|ABG96281.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 546 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDVHWGK 182 ++ AR+R + L+ ++ A Y+ + + Sbjct: 419 IGAPYECARVRESVALVCRDLGDDDTAQMEHDLASATYRQLGAVPDLERLRAEFRPDPAV 478 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT REV L ++ GK++ +A L +S TV ++++I K +RS A AYA Sbjct: 479 STPLTPREVCVLRLVAAGKSNRAVATELFLSEKTVARHLSNIFVKLGISSRSAATAYAYE 538 Query: 243 NNIV 246 + +V Sbjct: 539 HRLV 542 >gi|30314824|emb|CAD70192.1| putative HTH_LUXR domain-containing transcription activator [Pseudomonas syringae] Length = 238 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%) Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 G + + L F G L + + ++R+ + L + +S + Sbjct: 119 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDET 175 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ A Sbjct: 176 -----FTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 230 Query: 239 YAVRNNIV 246 + I+ Sbjct: 231 QLTKMGIL 238 >gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 196 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 1/115 (0%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + +VAR +G + + D L + F + F LT REV Sbjct: 83 AASPEVARQAMGFGASGFLPKTLAPDELIR-AVDRLVAGGTFLPDEAVARMSFSLTPREV 141 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + I+ G ++ EIA LG+ TV ++ ++ RK + R+ A A +V Sbjct: 142 EVVRGIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEARNRTHAAMRARDLGLV 196 >gi|84497630|ref|ZP_00996452.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] gi|84382518|gb|EAP98400.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] Length = 210 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 19/135 (14%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + + D L + R +G +L P L +RL Sbjct: 90 IVRAVESGARGYLLKDTPPAVLADAIRRAALGETVLAPPVAARLAERLRAPA-------- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ELT RE++ L ++ G ++ E+ L I TV ++ I K Sbjct: 142 -----------QVELTPRELDVLQAVARGLSNGEVGRELFIGEATVKTHLLRIFAKLEVT 190 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A + ++ Sbjct: 191 DRTAAVTAAYKIGLI 205 >gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 210 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141 P +V A+ + + T PE M + + Sbjct: 51 HPRVVVMDFAMPSMNGAVAARH--------ILRTAPETAILILSMHAEASYVRTCLEAGV 102 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYDVHWGK-DFELTGREVECLTWI 197 G +L + + + + +AA + D+ G LT RE+E L I Sbjct: 103 RGYLL----KNALDLEMVAAVKQVAAGKQVLDRRLGALDLPSGAAPAGLTTRELEVLQLI 158 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GK++ EIA +L +S NTV + A+IM+ + + YA+R +V Sbjct: 159 VHGKSNKEIAAVLSLSANTVAVHRANIMQTLGIHNTAELVVYAIRQGLV 207 >gi|227875745|ref|ZP_03993873.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269976705|ref|ZP_06183681.1| two-component response regulator [Mobiluncus mulieris 28-1] gi|306819021|ref|ZP_07452738.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|227843687|gb|EEJ53868.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269935070|gb|EEZ91628.1| two-component response regulator [Mobiluncus mulieris 28-1] gi|304648214|gb|EFM45522.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] Length = 220 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 20/210 (9%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-- 107 L + +G + + WD+ + S L+ + + D + + Sbjct: 17 RLLVDTLGREADIEIAWDVDSGEAALEAFKSGPVEILLLDLQMPGMDGIETITEFQRRDE 76 Query: 108 -----------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 V ++ + + R G ++ PK ++ Sbjct: 77 PPLIVVVSALTTLDKVQAAFRAGAVGFFMKEDDAGLIAQSLRRALRGELVFSPKCSQVVV 136 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 RL + AA KS+ + L+ RE++ + ++E + +IA L IS T Sbjct: 137 ARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALENKQIASELDISVAT 189 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++ SIM K T R+G +A A R ++ Sbjct: 190 VKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 219 >gi|269957500|ref|YP_003327289.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306181|gb|ACZ31731.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L ++ D ++T + ++ G + + + R L E Q Sbjct: 92 VFGALEAGVSGFLLKDAEPETITTAIRQVAAGNGTI---DQTLTRRILREF-----VQRR 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G LT RE E L +++G ++DEIA L + +TV +++A ++ K + Sbjct: 144 SLQPVSTSRGNGV-LTSREQEILLLLAQGMSNDEIARTLVVELSTVKSHLARMLPKLGVR 202 Query: 232 TRSGAIAYAVRNNIV 246 +R A+ +A +N V Sbjct: 203 SRLQAVVWAYQNRFV 217 >gi|163859318|ref|YP_001633616.1| nitrate/nitrite response regulator protein [Bordetella petrii DSM 12804] gi|163263046|emb|CAP45349.1| nitrate/nitrite response regulator protein [Bordetella petrii] Length = 220 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 8/133 (6%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 L + + +LT + R G ++ L DR E QA+ Sbjct: 93 QALRDGARGYLVKNIDAEALTAAIRRAATGEPVIADNMTAKLVDRFRE-------QASQG 145 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + + LT RE E + ++ G ++ IA L I+ +TV ++ +I++K +R Sbjct: 146 -AGNAANAERTRLTTREREIVQCLAHGASNKVIARQLDIAESTVKIHVQNILKKLNLTSR 204 Query: 234 SGAIAYAVRNNIV 246 YAV N +V Sbjct: 205 VQVAVYAVENGLV 217 >gi|313801796|gb|EFS43030.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|314962915|gb|EFT07015.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] Length = 218 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + +Q + V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E + G ++ EIA L +S TV ++++ + K + R +A A + ++ Sbjct: 155 IEVAKLGARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei 87.22] gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces scabiei 87.22] Length = 230 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 2/167 (1%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 V + P V + L + D + + + L A +D+ + V Sbjct: 54 VPALRPQVAVLDVRLPDGDGITVCRELRSRMPELACLMLTSFDDEEALLDSIMAGASGYV 113 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195 + G L+ + L + A A + + + LTGRE E L Sbjct: 114 LKQIRGSDLVSAVRTVAAGQSLLDPSATARLMARLRQGPQEEREPEALPGLTGREREILA 173 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 I EG T+ +I L ++ TV N+I+ ++ K + R A A + Sbjct: 174 LIGEGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 220 >gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 217 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV+ L+ RE E ++ G T+ EIA L IS TV + A+I+RK +TR+ Sbjct: 145 VDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRAD 204 Query: 236 AIAYAVRNNIV 246 + YA+ ++++ Sbjct: 205 LVRYAIHHHLI 215 >gi|226363249|ref|YP_002781031.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226241738|dbj|BAH52086.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 276 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 14/155 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL S D N+ P V + + Sbjct: 53 MDLRFGPGTSGVDATRNLRSLPNPPHVLVVTNYDTDADILDAVAAGA----------AGY 102 Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 L+ P ++ R G +L+ A+ + L+ RE++ LT ++ G+ Sbjct: 103 LLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTR--VRRPATSLSPREIQVLTLVAAGR 160 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ++ EI L +S TV +++ I K K+R+ A Sbjct: 161 SNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSA 195 >gi|62737761|gb|AAX98178.1| response regulator [Streptomyces aizunensis] Length = 201 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K + + L+ RE E L +S G T+ +I L IS TV ++ +K + R Sbjct: 128 KLFRARVVEPPALSDREREVLQLVSLGLTNADIGRQLFISEATVKTHLLRSFKKLSVSDR 187 Query: 234 SGAIAYAVRNNIV 246 + A+ A++ ++ Sbjct: 188 TAAVITALKLGLL 200 >gi|322436606|ref|YP_004218818.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321164333|gb|ADW70038.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 240 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL A M K+ V K + LT RE+E + I EG ++ ++A IS TV ++++ Sbjct: 154 LLKALHELMQKAAQVPERKTYGLTPRELEVVQCIVEGCSNKDVAKQFTISEETVKRHLSN 213 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I KT TR +A+ + +V Sbjct: 214 IFDKTGVSTRLELALFAIAHKLV 236 >gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 6/173 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLT 134 +V+ D L+ + + ++RP ++ F + + Sbjct: 50 DVVAMDVRMPLMDGIEATR--AVLRTVERPPKIVVVTTFENDEYVYEALRAGADGFLLKR 107 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREVEC 193 A I + L+ ++ + ++ A Y + + +LT RE E Sbjct: 108 ARPAEIVHAVRLVAEGESLLFPASVRQLA--AQYGGDEDGNRAARAAMERAQLTEREAEV 165 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ EIA L + TV ++++ ++ K + R+ A+ A + V Sbjct: 166 LRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESGFV 218 >gi|294627134|ref|ZP_06705722.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598567|gb|EFF42716.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 926 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R GA+A A++ + Sbjct: 852 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGL 911 Query: 246 V 246 + Sbjct: 912 L 912 >gi|229821191|ref|YP_002882717.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567104|gb|ACQ80955.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 230 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D +L V R+ G LL P + +R E+ A A Sbjct: 100 VYGALRAGAAGFLLKDVGPDALVDAVRRVHAGDSLLDPSVTRRVIERYVEL----ADAAP 155 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE E L ++ G ++ EI L +S TV +++ S++ K Sbjct: 156 VLPGAAAAA----RLTRREHEVLLAVARGSSNREIGAALDVSEATVKSHVRSLLAKLGLA 211 Query: 232 TRSGAIAYAVRNNIV 246 +R + +A +V Sbjct: 212 SRVQLVIFAYSEGLV 226 >gi|330820172|ref|YP_004349034.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] gi|327372167|gb|AEA63522.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] Length = 496 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 151 GRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + R RL +G L A A + + L+ RE E L IS G ++ E A Sbjct: 399 REEVERGRLCGEAVGALVAQGAPVARRTARRGTAGPHLSARETEVLRVISRGASNKEAAQ 458 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S +TV ++ ++ RK TR+ A A ++ Sbjct: 459 ELTMSPSTVRTHVENVFRKLDCSTRAAATLKASSLGLI 496 >gi|323165527|gb|EFZ51314.1| putative csgAB operon transcriptional regulatory protein [Shigella sonnei 53G] Length = 142 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 61 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 120 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 121 FKKIAVKNRTQAVSWA 136 >gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp Length = 225 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA +++ + +LT RE + + + G ++ EIA L Sbjct: 126 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 185 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 186 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 218 >gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D R L + + G ++ P+ I R L G + Sbjct: 91 FSGLRAGASGFLLKDTRPADLVDAIRTVASGDAVVSPR---ITRRMLELFGEYLPQGGD- 146 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + + ELT RE+E L ++EG ++ EIA +S TV ++ ++ K + Sbjct: 147 -RDTSASDPRLAELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGLRD 205 Query: 233 RSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 206 RVQAVVLAYETGLV 219 >gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + L + D R L + + G LL P L R+ A Sbjct: 97 IMEALRAGASGFLVKDTRPADLLAAIRTVAAGESLLSPGPTSRLIARVLS--------AP 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + G D LT RE + LT ++ G + EIA LG+S T +++ IM K + Sbjct: 149 QVPAANGAGGPDV-LTDRERQVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCAR 207 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 208 DRAQLVIVAYESGLV 222 >gi|167644589|ref|YP_001682252.1| two component LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347019|gb|ABZ69754.1| two component transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 212 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D L+ RE L ++ G+ + +IA L +S +TV ++ SI K R+ A+ A R Sbjct: 147 DEALSEREAHVLRLVAAGRANKQIAWELSLSEDTVKAHLKSIFAKLDVADRTHAVTIAAR 206 Query: 243 NNIV 246 I+ Sbjct: 207 RGII 210 >gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10] gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] Length = 224 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211 IL+D +W LA +++ + +LT RE + + + G ++ EIA L Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|16332248|ref|NP_442976.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1653878|dbj|BAA18788.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 228 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + ELT REV L ++EGKT+ EI L ++ +TV Y+ +IMRK + R+ A Sbjct: 158 DYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSA 217 Query: 237 IAYAVRNNIV 246 +R + Sbjct: 218 AIAGLREGYL 227 >gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF +L D + V + G LL P + DR Sbjct: 93 VFESLEHGAAGFLTKDTDPEFILHAVRVVAAGESLLSPGVTRRVIDRFTR--------GR 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ + H G D LT RE E L W++ G ++DEIA L +S TV ++ M K + Sbjct: 145 HARTGEPHPGLD-SLTARETEILGWVATGLSNDEIAERLVVSPATVRTHVGRAMMKLRAR 203 Query: 232 TRSGAIAYAVRNNI 245 R+ + A R++I Sbjct: 204 DRAQLVVIAYRSDI 217 >gi|297562533|ref|YP_003681507.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846981|gb|ADH69001.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V +A + + L+ + F + + Sbjct: 49 DVVLMDIRMPGVDGLAAAGRILADPALEATRVVILTTFDLDEYIFEALRAGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ ++ L+A Y A S + LT RE E + Sbjct: 109 EPGDLLRAVRVVHGGEALLSPGITRR--LIADY-ARRPPSAPDPSVRLNGLTEREREVVA 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A +V Sbjct: 166 LVGGGLSNEEIAAHLVLSPATAKTHVSRAMVKLGVRDRAQLVVIAYETALV 216 >gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 218 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] Length = 209 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 L ++L + LL A H LT R++E L +++EG + Sbjct: 109 HTLLSAIVMVLNGERYVPPLLLDDGAPYTIEPPRHAAG-APLTPRQIEVLRYLAEGVPNK 167 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA LG+S TV +I +I R R+ A A + ++ Sbjct: 168 VIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209 >gi|326331305|ref|ZP_08197597.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950938|gb|EGD42986.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 112 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G+++ +IA L +S TV ++++I K ++R+ A A+A + + Sbjct: 52 LTAREAEVLRLVASGRSNAQIATDLVLSEKTVARHLSNIFTKLDVRSRTAATAFAYEHGV 111 Query: 246 V 246 V Sbjct: 112 V 112 >gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354] Length = 252 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMF-------K 174 M + +A RIG + P + RI L E L A + F Sbjct: 117 RAMTRAAIVVPVHMAFGRIGAVSFNPLDEDRIDLAADYEEYADLFAILSRAFISSYTVVM 176 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + L+ REVECL W + GKT EI++I+ SR TV ++ + K RS Sbjct: 177 TSPEPLPAGSRLSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNRS 236 Query: 235 GAIAYAVRNNIV 246 + A + + Sbjct: 237 QTVFKAAQLGYI 248 >gi|256396944|ref|YP_003118508.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363170|gb|ACU76667.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 231 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E LT ++ GK++ EI+ L +S +TV ++++++ K + R+ + A + Sbjct: 168 LTAREREVLTLVARGKSNTEISTELFVSMSTVKTHMSALLAKLGARDRAQLVIRAYEGGL 227 Query: 246 V 246 V Sbjct: 228 V 228 >gi|46202045|ref|ZP_00053874.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 211 Score = 88.1 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 52/157 (33%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 +A+ D + + + + P + + ++ Sbjct: 55 DLAMPGMDGFSAIGAVRRSAPDIFLVVVSASEEPQTVRKALDSGAHGYICKSAGSASMMA 114 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 ++ D ++ A LT R+ + L + +GK++ EIA Sbjct: 115 GIRAVLEGDTFVSPHIIVPDSAVPAAGEINGEKLQSLLTPRQRDVLGMLRQGKSNKEIAR 174 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++ TV ++ +I+R + R+ A A + + Sbjct: 175 DLSLAEITVKLHVTAILRALGCENRTQAAILAAKMGV 211 >gi|312194246|ref|YP_004014307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311225582|gb|ADP78437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 245 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G ++ EIA L +S TV ++ I+ K + R A+ +A + Sbjct: 174 LTDRERDVLGEVAAGLSNAEIAARLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETGL 233 Query: 246 V 246 + Sbjct: 234 I 234 >gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] Length = 218 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 LL + + D ++ + ++ + LT RE+E L +++ G ++ Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YAV++ + Sbjct: 171 KVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212 >gi|225076056|ref|ZP_03719255.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens NRL30031/H210] gi|241758839|ref|ZP_04756952.1| transcriptional regulatory protein DegU [Neisseria flavescens SK114] gi|224952616|gb|EEG33825.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens NRL30031/H210] gi|241321047|gb|EER57260.1| transcriptional regulatory protein DegU [Neisseria flavescens SK114] Length = 218 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 LL + + D ++ + + ++ E LT RE+E L +++ G ++ Sbjct: 111 FLLESIRKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLEQLTPREMEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YAV++ + Sbjct: 171 KIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212 >gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 215 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTELFC 110 +Y+ + + + + ++ P ++ + + E D Y V + P + Sbjct: 27 DYLEFRGYEVSTAENGLKAL--ELLELQLPDLIICDIMMPEMDGYSLVKVIREDPRTGWI 84 Query: 111 PVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 PV + ++ + Y F+ + + + +++ + Sbjct: 85 PVLFLSAKGLSQDKVKGLNTGADVYIVKPFEPEELVAQVESSLRQASRLIK--------I 136 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + QA+ S G ELT EV + +++G + E+A + +S+ T+ +++++++ Sbjct: 137 NSRQADGQPSIQARPG--VELTPTEVRVVQLVAQGLANREVAKAMKVSQRTIESHVSNML 194 Query: 226 RKTATKTRSGAIAYAVRNN 244 KT R+ +A+ + Sbjct: 195 NKTGLHNRTELARWALESK 213 >gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 301 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 8/176 (4%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 EQ +V D V + ++ + L + + L E+ +D R Sbjct: 121 EQLRPDLVLLDVGLPGVSGIEVARRIHSLEPLAK-----ILMVSELEEDFLQAFRVDARG 175 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 C L A+ + + L G ++ + + AY + LT RE Sbjct: 176 CLLKSVEAQELLNAVGLVLSGYLVFGKAIVRLIFEHAYLPEEPRKPGKLA---ISLTKRE 232 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I++ T+ EIA L IS TV+++ A +M+K T+ +G + AV+ ++ Sbjct: 233 QEILGLIAQEYTNSEIAKHLYISPRTVDSHRARLMQKLGTRNTAGLVRIAVQQGLL 288 >gi|330961628|gb|EGH61888.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 77 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ +IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 HLTQREIEVLKWSAEGKTAGDIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75 >gi|256789340|ref|ZP_05527771.1| two component system response regulator [Streptomyces lividans TK24] gi|289773226|ref|ZP_06532604.1| two component system response regulator [Streptomyces lividans TK24] gi|289703425|gb|EFD70854.1| two component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ +A + + L + F + + Sbjct: 49 DVVLMDIRMPLLDGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + A + G+ LT RE E + Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAARSKEP--AAPGEMARLTEREREVMA 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|226305790|ref|YP_002765750.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184907|dbj|BAH33011.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 212 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 4/153 (2%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + +R L F A + + + A + + + Sbjct: 62 GIGATQQIVKAGRRARILVLTTFDDDDHLYPALAAGASGFFVKDTEPAELLGAIRRVAEG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 + + L + +A + D + LT RE + L ++EGK++ EIA L Sbjct: 122 EMVFTPELLRRV----VDRAVIGGIADTAVTESVPLTDRESQVLALVAEGKSNQEIADTL 177 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + TV ++A++M KT R Y ++N Sbjct: 178 HLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210 >gi|220914117|ref|YP_002489426.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860995|gb|ACL41337.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 222 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 20/135 (14%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + + + D L V + G +L P+ +L DR+ G Sbjct: 101 ILAAVEAGASGYMLKDAPPEQLRQAVLQAAAGGTVLAPRAAALLMDRISNPG-------- 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT REV+ L ++ G ++ IA L +S TV ++ I K Sbjct: 153 ------------TALTPREVQLLELLATGLSNRAIAKQLFVSEATVKTHLVHIYGKLGVD 200 Query: 232 TRSGAIAYAVRNNIV 246 R+ AIA A + I+ Sbjct: 201 NRTAAIAAATQRRII 215 >gi|192822729|gb|ACF06195.1| PanR [Pantoea sp. CWB304] Length = 246 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 13/172 (7%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 +++C++ E + + + P+ + +N +G + ++ + +M Sbjct: 69 IIKCLSSVESFLWDEDIMFKAQYKLPMIFRMGKNYDIKSGCT--FVLHDYNNNMALLSIM 126 Query: 146 LLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREVECL 194 + IL DR LL + + Y K LT RE + L Sbjct: 127 MGEHCREETKTSILNDRDRLQSLLISAHTKILSLYQEESEIIQQEKKKPGLLTSRENDVL 186 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S+GKT EIA L + TV ++A++++K AI + ++ Sbjct: 187 YLASQGKTYSEIACSLKVKEVTVKFHMANVVKKLGVMNAKHAINLGIELKLI 238 >gi|118471080|ref|YP_885478.1| response regulator [Mycobacterium smegmatis str. MC2 155] gi|118172367|gb|ABK73263.1| putative response regulator [Mycobacterium smegmatis str. MC2 155] Length = 243 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L + G ++ EI+ L +S TV+ ++ ++RK R A A + Sbjct: 172 LTPREQEILALLRSGLSNAEISDRLYLSPRTVSTHVERVLRKLGVANRVAAAVQATELEL 231 Query: 246 V 246 + Sbjct: 232 L 232 >gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 217 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 DV+ L+ RE E ++ G T+ EIA L IS TV + A+I+RK +TR+ Sbjct: 145 VDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRAD 204 Query: 236 AIAYAVRNNIV 246 + YA+ ++++ Sbjct: 205 LVRYAIHHHLI 215 >gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 509 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 D +LT RE+E L + G ++ EI LG++ NTV N+IA I K Sbjct: 419 HLRRPNRPDKPEAGLSDLTPRELEVLGLMCRGLSNAEIVKKLGVTHNTVRNHIARIYAKI 478 Query: 229 ATKTRSGAIAYAVRNN 244 R+GA+ +A Sbjct: 479 DVHDRAGAVVWARERG 494 >gi|226355186|ref|YP_002784926.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115] gi|226317176|gb|ACO45172.1| putative Transcriptional regulator, LuxR family [Deinococcus deserti VCD115] Length = 762 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 32/235 (13%) Query: 35 RMIPLDCTVSWTMRMYALTEYVG-----ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 R+ L R AL+E G A L W + + + D+ + + Sbjct: 529 RLGQLPEASRCFERAQALSEEYGGGEGAAFALGLRSWVAYLQGQQDTALP-------LAQ 581 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 +A K N L R L FH + CS + + P Sbjct: 582 VAWQHMLKVPNALLRYVLLHQMAFH-ARDAGQLSLAARMVGCSEAMRASTGEPWDVCFAP 640 Query: 150 KGRII---LRDRLWEIGLLAAYQANMFKSYDVHWG----------------KDFELTGRE 190 R + LR + E + + + + D+ + LTGRE Sbjct: 641 HVRRLDTALRTAMGERYEVCRQEGSALRLEDLVPDVAAMLENAVQTTYAETRVTPLTGRE 700 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L +++G + IA L IS TV+ +++S++ K R +A+RN + Sbjct: 701 QDVLRLLAQGISDKRIAQQLNISAATVSKHVSSMLSKLGVHNRVELARWALRNGL 755 >gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 212 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 168 YQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 YQ F DV + ELT RE++ L + +G ++ +++ L IS TV ++ Sbjct: 124 YQGKRFIPADVAMKLAERIESDELTAREIDVLEMMVQGSSTAKLSEALHISEGTVKFHVN 183 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I++K R+ A+ A+ IV Sbjct: 184 NILQKLNAHDRTQAVVTALHRGIV 207 >gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R E L W+++GKT+ +IA ILGIS +TV ++ I K +TRS A A+ Sbjct: 143 LGLTPRAAETLLWVAQGKTNLDIATILGISESTVKKHLLEIFDKLNIETRSAATLRALE 201 >gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus cereus ATCC 10987] gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC 10987] Length = 592 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 89/252 (35%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + E T + D L R++ +D + L + + Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLP 117 +V Q +D + P ++ + + + + + Q+ + +F T Sbjct: 407 --VVGLAENGNQAID-LCGRLQPHVILMDLDMQHMNGVEATKKIKQQWPHIRVLIFTTFQ 463 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + + Sbjct: 520 ETSQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 580 EAVQKALEIGII 591 >gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 74 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70 >gi|284032204|ref|YP_003382135.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811497|gb|ADB33336.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 9/174 (5%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQR------PTELFCPVFHTLPENITPPAGMDNRYC 131 V + +P ++ + + D + P + F T + + + Sbjct: 48 VDAHFPDLVLMDLRMPRVDGIVATRRVRARKNPPEVVVLTTFDTDENVLHALRAGASGFL 107 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A+I + + I+ + AA QA+ + L+ RE Sbjct: 108 LKDTPPAQIVEAVRRVAAGDPILSPAITRRLMERAATQADAHTQAQEALSR---LSPREY 164 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + + ++ GK + EIA L +S TV +I+ I+ K R+ A + Sbjct: 165 DVMLAVARGKANAEIAAELFMSVATVKAHISHILTKLEVSNRTQIALLAHDAGL 218 >gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 209 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 18/132 (13%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F + + D+ L ++ + G +L + L +R E L+ Sbjct: 93 IFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVLSESVKQHLLERRPENDPLSV---- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE + L WI+ G ++ +IA L IS TV +I +++RK Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVH 194 Query: 232 TRSGAIAYAVRN 243 +R A + Sbjct: 195 SRVAATVLYLEQ 206 >gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72] gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp. BH72] Length = 208 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + F LT + L +++GKT+ EIA +LG+S TV ++++I R R Sbjct: 135 RRSAAPVSERFGLTAAQTRVLELLAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNR 194 Query: 234 SGAIAYAVRNN 244 + A+ R+ Sbjct: 195 AQALVVIARHG 205 >gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L I++G + EIA LG+SR TV +I +I RK TRS A+ AV+ + Sbjct: 163 LTPREIDILWGIAKGFSYAEIASHLGLSRQTVPGHIKNIYRKLEVHTRSEAVFEAVQQGL 222 Query: 246 V 246 + Sbjct: 223 I 223 >gi|328544601|ref|YP_004304710.1| transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414343|gb|ADZ71406.1| Transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 233 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 12/227 (5%) Query: 31 DLLARMIPLDCTVSWTMRMYAL---TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 DL ++ + + + + L +GA+H L+ + + WP D Sbjct: 6 DLSTQLRIVSESTTAQKILDILEANLARIGATHILITGLPMPNRPIDSLVHRYRWP-DTR 64 Query: 88 RCMALSEKDKYYN-----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 S + L V ++ A + L V + Sbjct: 65 NGSTESPVLHASDSALMLGLASNRATVWTVTAGDMDHSRLLAAVGEGSQILIVPVTELHP 124 Query: 143 GLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISE 199 +F G + L + LL + + L+ RE + L + Sbjct: 125 LQAFVFCAGPKLKTGKYELAALELLTDAAFTRLQDIGALSSQRPGALSSRERKVLELTAF 184 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 GKT+ EIA +L IS+ TV+ ++ + K ++ + A+R + Sbjct: 185 GKTASEIAELLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231 >gi|325926289|ref|ZP_08187643.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] gi|325543323|gb|EGD14752.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] Length = 923 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 839 SGDDDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897 Query: 235 GAIAYAVRNNIV 246 A+A A++ ++ Sbjct: 898 SALAQALQRGLL 909 >gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 250 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 11/153 (7%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYC---SLTFDVARIRI----GLMLLFP--KGRIIL 155 L VF + Y + D+A+ + G + P R++ Sbjct: 94 CEPLVVSVFGDEENVLASIEAGAVGYIHKDAAPEDIAQTIVEMKAGASPISPMIARRVLA 153 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGIS 213 + R + LA A + + + ++ L+ RE E LT I+ G + EIA + G+S Sbjct: 154 KYRSLQSASLAPGMAASGAAPETAFDENERGLLSAREHEVLTLIARGFSYAEIARLKGLS 213 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +TV +I ++ K A ++S A+ A R ++ Sbjct: 214 VHTVQTHIKNLYGKLAVHSKSEAVFEATRLGLL 246 >gi|307700360|ref|ZP_07637400.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|307614571|gb|EFN93800.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 217 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 20/210 (9%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-- 107 L + +G + + WD+ + S L+ + + D + + Sbjct: 14 RLLVDTLGREADIEIAWDVDSGEAALEAFKSGPVEILLLDLQMPGMDGIETITEFQRRDE 73 Query: 108 -----------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 V ++ + + R G ++ PK ++ Sbjct: 74 PPLIVVVSALTTLDKVQAAFRAGAVGFFMKEDDAGLIAQSLRRALRGELVFSPKCSQVVV 133 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 RL + AA KS+ + L+ RE++ + ++E + +IA L IS T Sbjct: 134 ARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALENKQIASELDISVAT 186 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++ SIM K T R+G +A A R ++ Sbjct: 187 VKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 216 >gi|291450698|ref|ZP_06590088.1| two-component system response regulator [Streptomyces albus J1074] gi|291353647|gb|EFE80549.1| two-component system response regulator [Streptomyces albus J1074] Length = 204 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + +E+ + P L F + + Sbjct: 38 DVVLMDVRMPEVDGIRATERVLAAGGERAPRVLVLTTFENDDHVLAALRAGAAGFLLKRA 97 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ ++ + + L + ++ + W LT RE E L Sbjct: 98 EAETLLHAVRVVARSDTLLFPSSVRALAL----AHDPRRAAEPPWAAR--LTDREREVLH 151 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G T+ EIA L + TV +++A+++ KT T+ R+ A+ A + Sbjct: 152 LMATGLTNAEIAARLTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGL 201 >gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+ G ++ EIA + ++ TV +++ ++ K + R A+ YA + + Sbjct: 155 LTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYESGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|323492273|ref|ZP_08097431.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323313586|gb|EGA66692.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 222 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 21/231 (9%) Query: 12 LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71 + D + + +S + +S LL S + V A L R D Q Sbjct: 1 MTNRDNYKITLISDVSMQSKLLKD--------SLEKGLGMQVSIVTADT--LQRMDDGQS 50 Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 Q L+++V D+ + + S+ + Y + + + P + + R Sbjct: 51 Q-LENLVLIDYHY-----LDDSKFESYNSAKAQSESSIKEIVFNCPTDASSSQLFKWRNL 104 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGR 189 F + + LL I+ D +W +A F+ + LT R Sbjct: 105 VGVFYLDD---EVSLLLKGMDKIMNDEMWLSRKVAQDYIEHFRCANTVTTSQAYANLTKR 161 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 E E + + G ++ +IA L +S NTV ++ +I +K K R A+ +A Sbjct: 162 EKEIMRLLGHGASNIQIAEELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 226 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 6/154 (3%) Query: 96 DKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 D +R ++ V L + T A + Y + + + G Sbjct: 74 DLLAEARERYPQVEILVISVLGDETTILAAIAAGASGYILKDALPEDVHATALEVLAGGS 133 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 I + + A + + V LT RE++ L I++G T +EIA LG+ Sbjct: 134 PISPS-IARFIVKRARAESGARPAPVQEAP--HLTPRELDILWGIAKGLTYNEIADRLGL 190 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 SR+TV ++I +I RK TR A+ AV+ ++ Sbjct: 191 SRHTVPSHIKAIYRKLQVATRGEAVYEAVQCGLI 224 >gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] Length = 218 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R++L+ W +L ++ LT RE E L+ +G ++ EI Sbjct: 113 LLEGIRVLLKGGDWLPRVLTERLLGQWRRMRQLAESKTSLTLREREILSLAGKGLSNAEI 172 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A L +S +T+ ++I +++RK R+ A AY +R+++ Sbjct: 173 AEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 210 >gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 218 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G T+ +IA L +S TV N++ + RK R YA+ + + Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] Length = 217 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 41/82 (50%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A F LT R+V+ LT++S+G +S EIA L +S +TV +I +I Sbjct: 134 IARLMLQKFHRNTPTPKTPETLTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKNI 193 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K +R+ A+ A + I+ Sbjct: 194 YAKLQVNSRTEALHEAAKLGIL 215 >gi|331695588|ref|YP_004331827.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950277|gb|AEA23974.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 206 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 16/134 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D +L V R+ G ++ P ++ D Sbjct: 88 VLAALRAGASGFLCRDTDGFALADAVRRVAAGDVVFGPGIADLVLDAHGAGA-------- 139 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE + + + +G T+ +I V L +S TV N++ I RK Sbjct: 140 --------SAGPVVLTEREADVVRLVVDGLTARQIGVRLVLSPRTVENHVQRIQRKLGVS 191 Query: 232 TRSGAIAYAVRNNI 245 R+ + +A+ N + Sbjct: 192 GRAAMVRFAIENGL 205 >gi|312886495|ref|ZP_07746104.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311301123|gb|EFQ78183.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 263 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ T RE L +I+EG +S +IA L IS NT+ N+ +++RKT K + + AV Sbjct: 199 EEAGFTKREKGVLVYIAEGLSSKQIADKLNISENTIVNHKQNMLRKTNAKNVTELVVMAV 258 Query: 242 RNNIV 246 RN ++ Sbjct: 259 RNRVI 263 >gi|332560426|ref|ZP_08414744.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N] gi|332274224|gb|EGJ19540.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N] Length = 105 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 38/53 (71%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +L+ R++E L WI+ GK++ EIA+ILG+SR V +++ I++K +R+ A+ Sbjct: 47 KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 99 >gi|307328434|ref|ZP_07607610.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886007|gb|EFN17017.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 234 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 10/122 (8%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + L V + G +L P L + L A +V Sbjct: 110 GAAGYVLKQIKGSDLVSAVRTVASGQSMLDPATTARL------MSTLRGDTAPQEPRDEV 163 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G L+ RE E L I +G T+ +I L +S TV N+I+ ++ K + R A Sbjct: 164 LAG----LSPREREILVLIGDGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAV 219 Query: 239 YA 240 A Sbjct: 220 LA 221 >gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 211 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL ++ + RP V T + ++ Sbjct: 57 MDLQFGRGMNGSQATAAITARPGAPRVLVVTTYDTDADTLPAIEAGATG----------Y 106 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P + R G A + + LT RE E L+ ++EG ++ Sbjct: 107 LLKDAPPEELAAAVRTAAAGRTTLAPAVADRLMNRLRAPHAALTRRETEVLSLVAEGLSN 166 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ L ++R TV +++A + K +R+ A+A A+ ++ Sbjct: 167 QGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGVI 209 >gi|253997167|ref|YP_003049231.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983846|gb|ACT48704.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 263 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 25/199 (12%) Query: 41 CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--DSIVSSDWPFDLVRCMALSEKDKY 98 + T M L +Y H + ++ + D ++ + LS Sbjct: 78 TSTDLTNLMTDLFQYW--KHHSKAPITMNVDKGIFHDHQIAHHEA-----NINLSTMQSA 130 Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 + H + + + S T + + + L +L P LR Sbjct: 131 H-------------IHGIKDLRGGHDCLYVFLSSETNNSSNYKKSLTMLLPFIDNSLRQL 177 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L + + G L+ RE+ + W+ GKT+ EI +IL IS TV Sbjct: 178 EHLPEQLPEVEPEKTIDDNQVTGI---LSEREISIMEWVKAGKTNQEIGIILDISSFTVK 234 Query: 219 NYIASIMRKTATKTRSGAI 237 N++ I++K R+ A+ Sbjct: 235 NHMQRILKKLDVLNRAQAV 253 >gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] Length = 592 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + Q E T + D L R++ +D + L + + Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIRDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114 +V Q +D + P ++ + + D Q P L F Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVVLMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 463 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I Q + Sbjct: 464 DTEQALDSLRNGADGFLLKSIETLELANTIRLIHRGGTLIDQGMSHKIFEKFDEQIETPQ 523 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S +ELT RE+E L +++G IA L +S TV NY +S K + + Sbjct: 524 SKATA----YELTTREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASSAYTKLGVRNKE 579 Query: 235 GAIAYAVRNNIV 246 A+ A+ ++ Sbjct: 580 EAVQKALEIGVI 591 >gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 16/163 (9%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 +R ++ + + +R + + + D Y S T + Sbjct: 59 IRLPGMNGIEATRRIRERHPDTRVLIVTAYDDEEYVRGAFDVGAAGYLSKTAPGRELVEA 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + ++ + L+AA A + LT RE L ++EG + Sbjct: 119 VRAVAGGNSVL------QPTLMAALLAKRSSPANT-------LTDRERAVLRLLAEGMHN 165 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA LGIS TV + I K +R+ A+ A+ N++ Sbjct: 166 KQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANLL 208 >gi|117919601|ref|YP_868793.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117611933|gb|ABK47387.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 225 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 87/218 (39%), Gaps = 17/218 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R+ ++ + +L S + V W Q+ + +D L+ + + Sbjct: 19 RVGLVEDQQLVRQGIASLIAI---SQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPV 75 Query: 95 KDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF 148 D + Q R + PV + + N + + ++ + + Sbjct: 76 LDGISLLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVA 135 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 G +I L ++ ++ A ++D+ L+ RE E L +++ G ++ EIA Sbjct: 136 QGGHLIEPSVLEQMQQ-SSATAQSGPTHDL-------LSEREREILGFMAGGFSNKEIAN 187 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ TV N++++I+ K + R+ A+ ++ +++ Sbjct: 188 AVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225 >gi|311894358|dbj|BAJ26766.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 226 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 59/166 (35%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 V + P V M L + D + + + L A +D+ V Sbjct: 49 VPALRPDVAVLDMRLPDGDGVTVCRELRSRMPRLACLMLTSFDDEEALLDSIMAGAAGYV 108 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 + G L+ + + + G A M + +LT RE E L I Sbjct: 109 LKQISGTDLVTAIRTVASGQSMLDPGAATRLMARMRGESPAPAPEFPQLTDREREILALI 168 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EG T+ +I + ++ TV N+I+ ++ K + R A A + Sbjct: 169 GEGLTNRQIGERVYLAEKTVKNHISRLLAKLGVERRVQAAVIATQT 214 >gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 886 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+GRE+E L I+EG ++ EIA L +S TV + +I K + +R+ A+A A R N Sbjct: 825 PLSGRELEVLGLIAEGLSNSEIARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRLN 884 Query: 245 I 245 + Sbjct: 885 L 885 >gi|256380392|ref|YP_003104052.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924695|gb|ACU40206.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 225 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 4/172 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + + + L L F + + Sbjct: 50 DVVLMDIRMPEVDGIEATRRIAADEDLAGVRILVLTTFEEDENVLRAVRAGAAGFLGKNV 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194 A + + + I+ L + +S EL T RE E + Sbjct: 110 GPAELLHAVRTVASGDSILSPAA---TKALVRHVLAHPESDPPQAPAPLELLTDREREVV 166 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++D IA L +S T ++ M K T+ R+ + A R +V Sbjct: 167 VLAAHGLSNDRIAEHLHLSPLTAKTHVNRAMSKLNTRDRAQLVVLAYRTGLV 218 >gi|31790500|emb|CAD56676.1| putative regularory protein [Enterobacter sakazakii] Length = 216 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N +T + R+ GL + + LA+Y +Y + + LT Sbjct: 105 NGVFYVTEEEGRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|331698102|ref|YP_004334341.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952791|gb|AEA26488.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 522 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + + D + + A ++ +++ LT REVE L ++ G ++ +IA Sbjct: 423 RRGALDADAVEAVLSAAGHRVRRRRAWPA------GLTTREVEVLRLLARGLSNRDIAGR 476 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S TV ++ I KT R+ A +A+R+ + Sbjct: 477 LVLSPKTVGAHVEHIYAKTGANNRATAGLFAMRHGL 512 >gi|312197189|ref|YP_004017250.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228525|gb|ADP81380.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 285 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 + ++RDR+ I L + F LT RE+E + +I+EG ++ E A Sbjct: 187 HAGDQAVVRDRVASIRQLLQACYG-YMGEATARETAFGLTPRELEVVRFIAEGHSNAEAA 245 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + TV +Y+ SIM+K R+ A+ A R ++ Sbjct: 246 KHLTVKPETVKSYLRSIMQKLGVHNRTAAVNVARRAGLL 284 >gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 207 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 10/156 (6%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143 VR + + + ++ + T ++ N Y + I Sbjct: 54 VRMPVMDGVLGTKLIKEHYQDIKVVILTTFKDDEYIAEAARNGAEGYLLKNQSLDSIVDS 113 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L ++ + ++ +A + K F+LT RE E L + EG ++ Sbjct: 114 LRVVGEGNTVFQKE-------VAGTLHAILKGEKKKDPASFQLTKREFEVLKLVGEGLSN 166 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 DEIA L ++ TV NYI++++ K + R+ + Sbjct: 167 DEIAQKLFLTPGTVRNYISNLLVKLNLRDRTQLAIF 202 >gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 17/223 (7%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 S + R++ D + + L E G F++V + +++ + ++ P ++ Sbjct: 2 STMPIRILLADDHRMFRQGLRELLERKG--GFIIVG-EASTGREVLAQAAALRPDIVLLD 58 Query: 90 MALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + + E D V ++ + V + +++ R L A I Sbjct: 59 IQMPEIDG-VAVARQLAQTHPDVKVIMLTMYRQDQHLFEAIKAGARAYLLKDADADELID 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 ++ +G L + + F+ + + +LT RE + LT ++EG + Sbjct: 118 VIERVHRGEAALDPT------VTLRVFDEFRRLSIDQDAE-QLTERERDILTLLAEGHDN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S TV N ++ I +K R+ A AV+ ++ Sbjct: 171 RTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRGLI 213 >gi|115376214|ref|ZP_01463456.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366787|gb|EAU65780.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 202 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L I++G ++ E A +L +S+ T+ ++ I RK R A+ +R Sbjct: 139 PLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRKG 198 Query: 245 IV 246 ++ Sbjct: 199 LI 200 >gi|297567226|ref|YP_003686198.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851675|gb|ADH64690.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 212 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 I E+ L + + ++ LT RE E L +++G ++ IA Sbjct: 117 SEAIHAASRGEVRLHPEAAKRLMREVRTPEMRE-SLTPRETEILKLLAQGHSNKHIARET 175 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV +++SI+ K +R+ A +A++ +V Sbjct: 176 KVEERTVKAHVSSILAKLGLSSRTQAALFALKEGLV 211 >gi|297563175|ref|YP_003682149.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847623|gb|ADH69643.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 225 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 49/139 (35%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + F +G + + + D ++ GL + G + + + Sbjct: 87 VILTTFSEDAYIARALSGGASGFVLKSGDPRQLVEGLRAVAEGGAYLSPEVARRVIDELD 146 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + LT RE L + +G ++DEIA L I+ TV ++ SI+ + Sbjct: 147 ASGGRLSRASAARERVGRLTERERGVLALVGQGCSNDEIARRLAIAPGTVKVHVGSILTR 206 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R A A +V Sbjct: 207 LDVRNRVQAAVVAYEAGLV 225 >gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] Length = 214 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 16/163 (9%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143 + LS +L+R E V H PE I+ G Y ++ Sbjct: 58 LNMPGLSGLSATEMILERRPETRILVLSMHDTPEYISTALGHGAMGYVLKDVPTDEVKRA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + R + + V G +LT RE L +++GK++ Sbjct: 118 IDAVMAGERYLCTGAEGAL-------------RPVMTGGREQLTNREQMVLLQLAQGKSN 164 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+A L IS TV + +I RK + +G YA+ + ++ Sbjct: 165 KEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207 >gi|257068341|ref|YP_003154596.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256559159|gb|ACU85006.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 225 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D+ L V + G LL P L+A + A Sbjct: 97 VFAALRAGASGFLLKDSTPEELVHAVRVVADGQSLLAPP---------VTRALIADFVAR 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +S LT RE+E L ++ G + EIA L ++ TV +++ I+ K + Sbjct: 148 PERSAGADASLAV-LTERELEVLRGVARGLANREIAAELVMAEQTVKTHVSRILGKLMLR 206 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 207 DRTQLVVAAYESGLV 221 >gi|261337245|ref|ZP_05965129.1| response regulator of two-component system [Bifidobacterium gallicum DSM 20093] gi|270277604|gb|EFA23458.1| response regulator of two-component system [Bifidobacterium gallicum DSM 20093] Length = 275 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 20/155 (12%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY--- 168 V + + D +L + +R G ++ P L +++ G + A Sbjct: 121 VMAAINAGASGFLLKDTEPETLLSSIRTVRDGNAIIAPTATKRLIEQMMHHGFVGAAPST 180 Query: 169 -QANMFKSYDVHWGKDFE----------------LTGREVECLTWISEGKTSDEIAVILG 211 AN ++ + LT RE E L ++ G ++ IA L Sbjct: 181 GAANNTQTQPSSSSRPQTGTAATDTPYTDPELALLTDREREVLIEVAHGLSNQVIASKLF 240 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++A I+ K + R A+ +A N++V Sbjct: 241 ISLPTVKTHVAHILSKIHARDRVQAVVFAYENHLV 275 >gi|121592864|ref|YP_984760.1| two component LuxR family transcriptional regulator [Acidovorax sp. JS42] gi|222109644|ref|YP_002551908.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|120604944|gb|ABM40684.1| two component transcriptional regulator, LuxR family [Acidovorax sp. JS42] gi|221729088|gb|ACM31908.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 223 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLL 147 + D + + + + A + N Y T D + + Sbjct: 62 GVRGVDAIAGLREASQGSRVLMLTVSEDGQDLAAALRNGAQGYLLKTIDGDLLAQAIRRA 121 Query: 148 FPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 ++ + + ++ + A + L+ RE + L I+ G ++ EI Sbjct: 122 ARGEPVVSPEMMGKLVAAFQSQGAPTPEPLPEEEEPASVLSPREEDVLREIARGLSNKEI 181 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV-RNNI 245 A L I+ TV ++ I+RK +R A YA R+ + Sbjct: 182 ARALDIAETTVKIHVQHILRKLGLSSRVQAAVYASDRHRL 221 >gi|296269744|ref|YP_003652376.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092531|gb|ADG88483.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTSDE 205 ++R E + + A +F S D + EL+ RE E L +++G ++ E Sbjct: 124 EDALIRVARSETPMPSQIVAELFDSADRMLRRGTHPRYVELSAREREALQLLADGLSNKE 183 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS + + +I+ K R+ A A+R+ +V Sbjct: 184 IAQRLYISVHGAKRLVGNILLKLNCPNRTQAAVIAMRHGLV 224 >gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 207 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------IGLLAA--YQANMFKSYDV 178 D R LT +R L +L+ L +L Y Sbjct: 78 DARIIVLTTYAGDVRALSALRAGASGYLLKSSLRRELIDTIRAVLGGQRYLHPEVAHDIA 137 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE++ L ++ G + EIA L +S +TV ++ SI K R+ A+ Sbjct: 138 VNAIAEPLSEREIDVLKRVANGAANKEIARALSLSEDTVKGHMRSIFSKLDVTDRTQAVT 197 Query: 239 YAVRNNIV 246 A R I+ Sbjct: 198 VAHRRGII 205 >gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 87 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 41/64 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ +IAV L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 9 PVSLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVALVRWALQ 68 Query: 243 NNIV 246 + Sbjct: 69 WGKI 72 >gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 153-1] Length = 230 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 15/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209 Query: 232 TRSGAIAYAVRNNIV 246 +R A ++ I+ Sbjct: 210 SRVAATILFLQQRII 224 >gi|256378098|ref|YP_003101758.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922401|gb|ACU37912.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 225 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 2/156 (1%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + + P L F T + + + + ++ Sbjct: 68 GVEATRRLSALPDSPKVLVLTTFDTDEDAFAALRAGASGFLLKNSPPEDTLNAIRVIAAG 127 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ LL + + + + LT RE E L ++ G ++ E+A + Sbjct: 128 DAVVAPRVTRR--LLDRFAGRLDTAPAPADDRLDVLTEREREVLVLVARGLSNVELAERM 185 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ TV ++ ++ K + R A+ A +V Sbjct: 186 HVAEATVKTHLGRVLTKLGLRDRVQAVVLAYELGLV 221 >gi|111020362|ref|YP_703334.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819892|gb|ABG95176.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1094 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGKDFELTGREVECLTW 196 R R L + + +RL + + A Q K +LT RE E Sbjct: 980 QRTRQLLGDSAFEKESRVGERLEHLASIEFALQKRTSKPAPATPAAKVKLTPREKEVGKL 1039 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 ++EG T+ EIA L IS T ++ I+ KT ++R+ A+ R Sbjct: 1040 VAEGLTNKEIAERLVISPRTAEGHVDRILTKTGHRSRAQLAAWIAR 1085 >gi|29832167|ref|NP_826801.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609285|dbj|BAC73336.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 239 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139 P +V + + D + + P ++ + T ++ + Sbjct: 50 PDVVVMDIRMPGTDGIEATRRITEAPGDVRILMLTTFDDDDYVYGALRAGASGFLV---- 105 Query: 140 IRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTW 196 +GL + R++ D L G+ + S + + E+T RE E LT Sbjct: 106 KDMGLDDILAAVRVVAAGDALIAPGVTRRLIQDFVASPEQPRARRELTEITEREREVLTL 165 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G T+ EIA L IS T Y+ ++ K + R + A +V Sbjct: 166 VGTGLTNTEIAERLFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAGLV 215 >gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] Length = 74 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 35/67 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +G LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ Sbjct: 4 AEFGPKPLLTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQAV 63 Query: 238 AYAVRNN 244 +R Sbjct: 64 IELIRLG 70 >gi|150019634|ref|YP_001311888.1| two component LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906099|gb|ABR36932.1| two component transcriptional regulator, LuxR family [Clostridium beijerinckii NCIMB 8052] Length = 218 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWG 181 + + Y + + + + II +D L + L L K G Sbjct: 94 ISNGADGYILKDISTEELILSIKSISLGLGIITKDILSPMILNLRKENKKAKKKIIDING 153 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + LT RE++ ++ I +GK + EIA L I+ TV N I I+ K + + R+ YAV Sbjct: 154 INISLTERELKIVSMIVDGKDNKEIASSLFIAEGTVKNIITEIISKLSLRDRTQLAVYAV 213 Query: 242 RNNIV 246 +N +V Sbjct: 214 KNGLV 218 >gi|332669029|ref|YP_004452037.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338067|gb|AEE44650.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 965 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L +++G ++ +I L IS TV+ +I++++ K R+ A++ A + + Sbjct: 901 LTAREVEVLGLVAQGLSNRQIGEKLFISGKTVSVHISNLLAKLGVSGRAEAVSVAHQRGL 960 Query: 246 V 246 + Sbjct: 961 I 961 >gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 220 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ G +L + + + +A + Sbjct: 95 RAGASGFLLKDASARQLADGVRVVA-AGEALLAPTVTKRLITEFAKAPGSSPRPPAMAQI 153 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K A + R+ A +A Sbjct: 154 GELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEA 213 Query: 244 NIV 246 +V Sbjct: 214 GLV 216 >gi|300703751|ref|YP_003745353.1| transcriptional regulator protein, luxr family [Ralstonia solanacearum CFBP2957] gi|299071414|emb|CBJ42733.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CFBP2957] Length = 252 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +D IV+ D+P + + + +++R PV+ + P A +D + + Sbjct: 52 LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPAAEIDRGWLA 108 Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171 L VA L L L ++ L A+ Sbjct: 109 KFIAHDLRNAVADGVYDEGHCIGTYFSFHRLASVNVPDLASVLRDLTPVLHRTLMRAVAD 168 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K++ L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT Sbjct: 169 TEKTWHSALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228 Query: 232 TRSGAIAYA 240 R G A Sbjct: 229 NRVGVAVLA 237 >gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4] Length = 207 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REVE L +++G+T+ EI L I TV ++ + K R+ A+ A+ + Sbjct: 145 PLSAREVEVLRLVAKGRTNAEIGRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRH 204 Query: 245 IV 246 ++ Sbjct: 205 LL 206 >gi|229492601|ref|ZP_04386404.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229320587|gb|EEN86405.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 358 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 32/68 (47%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H LT RE+E LT+++ G ++ EI L S TV ++ I+ K +R A Sbjct: 287 HEKAPRNLTARELEVLTYLARGLSNAEIGRELHASHRTVATHVERILDKLDCHSRVAAAG 346 Query: 239 YAVRNNIV 246 A IV Sbjct: 347 IATAEGIV 354 >gi|241203502|ref|YP_002974598.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857392|gb|ACS55059.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 65 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 36/60 (60%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E + W++ GKT+ EI ILGIS TVN +IA+ + + +A A+RN I+ Sbjct: 5 TPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNGII 64 >gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 237 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 10/186 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V +D + L + + L +F + + Y Sbjct: 51 QQLLPDVVITDVMMPRLDGYGLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 110 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMF------KSYDVHW 180 FD + + + + + +L++ ++G +A + ++ Sbjct: 111 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADADMGQIAKQITEIRSLLAQAEALPAQE 170 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA Sbjct: 171 PVQHTFTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 230 Query: 241 VRNNIV 246 +++ +V Sbjct: 231 LQHRLV 236 >gi|133757303|ref|YP_001096222.1| hypothetical protein pLEW279a_p23 [Corynebacterium sp. L2-79-05] gi|110084187|gb|ABG49341.1| hypothetical protein [Corynebacterium sp. L2-79-05] Length = 221 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 2/137 (1%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 LF F + + + D ++ G+ + +G LL + Sbjct: 85 LFVTTFGEDDYIAEAIRLDADGFVLKSGDPRQLIAGVHAVAGRGAFFSPSVARR--LLDS 142 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + + Y + LT RE E L +S+G+T+ EIA L ++ TV ++++I+RK Sbjct: 143 GVSTTYTQYASAVERFERLTAREREILIRLSQGETNAEIAKALHLAPGTVKVHVSAILRK 202 Query: 228 TATKTRSGAIAYAVRNN 244 T + R A A+R Sbjct: 203 TEARNRVEAALIALRAG 219 >gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Paenibacillus polymyxa E681] Length = 217 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 13/135 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-KGRIILRDRLWEIGLLAAYQAN 171 F + + + L + + G L+P + ++ + L +I Sbjct: 92 FRAIQAGASGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGI---- 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G L+ RE E L+W+++G + EIA L IS TV ++ +++M K + K Sbjct: 148 --------AGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLK 199 Query: 232 TRSGAIAYAVRNNIV 246 TR + +A++ ++ Sbjct: 200 TRPELVKFALKKGLL 214 >gi|227501858|ref|ZP_03931907.1| possible response regulator [Corynebacterium accolens ATCC 49725] gi|227077352|gb|EEI15315.1| possible response regulator [Corynebacterium accolens ATCC 49725] Length = 223 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ A+ + LT RE+E L ++ G ++ +I L +S TV +++ Sbjct: 142 SALSPIVADRLMTR--VRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLV 199 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K ++R+ A+A A ++ Sbjct: 200 HIYDKLGVRSRTSAVAAAREQGVL 223 >gi|213965869|ref|ZP_03394060.1| two-component system response regulator [Corynebacterium amycolatum SK46] gi|213951447|gb|EEB62838.1| two-component system response regulator [Corynebacterium amycolatum SK46] Length = 227 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + LT RE+E L ++ G ++ +IA L ++ TV +++ I K +R+ A+A Sbjct: 159 RNPNTALTPRELEVLELVARGMSNRKIAEQLVLTEATVKSHLVHIFTKLDVSSRTAAVAR 218 Query: 240 AVRNNIV 246 A ++ Sbjct: 219 AQELGML 225 >gi|184201824|ref|YP_001856031.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183582054|dbj|BAG30525.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 299 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E I EG ++ EI L +S TV +++ I+ K + R A+ A + Sbjct: 236 LTAREREVFELIGEGCSNGEIMQRLFLSEPTVKTHVSHILSKLDARDRVQAVVIAYETGV 295 Query: 246 V 246 V Sbjct: 296 V 296 >gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 4/128 (3%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 + + + Y + V + + + + L + Sbjct: 92 DVLEAVKAGASGYLVKSASVDELVDAVQRTAAGDAVFTAG----LAGLVLGEYRRMAVTP 147 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + +LT RE E L +++G T+ +IA L IS TV N++ S +RK R Sbjct: 148 DSGDRAPQLTDRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQLHNRVELA 207 Query: 238 AYAVRNNI 245 YA+ + + Sbjct: 208 RYAIEHGL 215 >gi|89274998|gb|ABD65961.1| two-component system response regulator [Streptomyces fungicidicus] Length = 223 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D L V G L+ P + L L E + A Sbjct: 94 VYGALRGGAAGFVLKDAGPALLIEAVRAAYNGEALVSPSVTLRLLKHLNESQAMPRGGA- 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + EL+GR +E + I+ G+T+ EIA L IS +TV ++++ I K + Sbjct: 153 ---------ARSSELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVR 203 Query: 232 TRSGAIAYAVRNNIV 246 R+ +A N +V Sbjct: 204 NRTEIAVWAWENRVV 218 >gi|83311866|ref|YP_422130.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946707|dbj|BAE51571.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 211 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 1/170 (0%) Query: 77 IVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V + FD+ + +++ D + + + + P Sbjct: 42 LVRGNADFDVALLDLSMPGMDGFSAIGAVRRSAPDIYLVVVSASEEPQTVRKALDSGAHG 101 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ ++ D ++ A LT R+ + L Sbjct: 102 YICKSAGSASMMAGIRSVLEGDTFVSPHIVVPDTAAPSIGDINGEQLQSLLTPRQRDVLG 161 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + +GK++ EIA L ++ TV ++ +I+R + R+ A A + + Sbjct: 162 MLRQGKSNKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMGV 211 >gi|251793298|ref|YP_003008026.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter aphrophilus NJ8700] gi|247534693|gb|ACS97939.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter aphrophilus NJ8700] Length = 209 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 L++ + + +V + F++V + + P + L Sbjct: 8 LIIDDHPLMRRGIKQLVELEEGFEVVGGAGNGSEGINLALQTSPDLIILDLNMKGLSGLD 67 Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIG----L 164 T G+D R LT A+ I ++ +L+D +L I + Sbjct: 68 TLKALRAEGVDARIVILTVSDAKSDIFTLIDAGADGYLLKDTEPDTLLSQLKRIAQGEVI 127 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ N+ + LT RE++ L I+ G ++ +IA L IS TV +I ++ Sbjct: 128 LSDSIKNLLIERQSSQEPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK +R A + Sbjct: 188 LRKLNVHSRVAATVLYFEHK 207 >gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 238 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVH-WGKDFEL---TGREVECLTWISEGKTSDEIAVILG 211 + + ++ +A Y ++ D+H G +L T RE+E L +++GK EIA+++ Sbjct: 145 HELMIDLAHIAHYVHK--RACDIHGEGHTIDLSTITRREIEALALVAQGKKPGEIAMLMR 202 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS +TV ++ S K R A A A+R ++ Sbjct: 203 ISNDTVKAHLDSARDKLQALNRVHAAAKALRAGLI 237 >gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 6/177 (3%) Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPP 123 R + +++S +P V + + D+ + + + E Sbjct: 60 RMPVMDGVATTAMISKHYPAIKVLVLTTFDDDQLIAQSMAVGAQGYLLKDTPSEELAAAI 119 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + Y + + IG + + R L + +AN Sbjct: 120 RSVAKGYSQFGPGIVQKMIGALPNIAAP-PVSRSTRASSALDTSLEANKVDLPPEVAA-- 176 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L I G ++ EIA L +S TV N++ S++ + + R+ A A Sbjct: 177 --LTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVTSVLSRLGLRDRTQAALLA 231 >gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] Length = 305 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + + + L + ++ G L P+ IL L + LA+ + Sbjct: 176 IVACAEAGVAGYHLRSDSLKDLLVLIHKVAAGESLCSPRVSAIL---LRRLSTLASQRQP 232 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + K+ LT RE++ L + G ++ +IA L I+ +TV N++ S++ K Sbjct: 233 V--------HKELVLTSREIQILRLLEMGLSNRDIAEQLCIAVHTVKNHVHSLLAKLGVS 284 Query: 232 TRSGAIAYA 240 TR+ A A A Sbjct: 285 TRAQAAALA 293 >gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V+ D L+ + + P L F + + Sbjct: 50 DVVAMDVRMPLLDGIEATRALLRSVAAP-PKILVVTTFENDEYVYGALRAGADGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + L+ ++ + + A Y + LTGRE E L Sbjct: 109 RPAEIVHAVRLVAEGESLLFPASVRRLA--AEYGDGDGNRAARAALERARLTGREGEVLR 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G T+ EIA L + TV +++++++ K + R+ A+ A + V Sbjct: 167 LMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217 >gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 537 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L F + Y + D + + L++ G +I L+ Sbjct: 399 RVLILSTFQNTERAKEIIRNGADGYLLKSIDSRELAESIRLVYRGGTMINHG-LFHRMWE 457 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + F+S GK++ LT RE+E L +S+G IA L +S TV NY +++ Sbjct: 458 ENEEKGSFESRSD--GKEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 515 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K K R A+ A ++ Sbjct: 516 EKLGVKNREEAVQKAKDKGLL 536 >gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 8/181 (4%) Query: 66 WDLFQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE------ 118 D+ +V+ D VR L+ + LQ P V L + Sbjct: 19 ADMVDAAGDLRVVAEAGSVADAVRRGTLTRPEVALVDLQLPDGTGIEVIRRLADESSDTR 78 Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + + D+ + +V R ++ I+ R G + + ++ + Sbjct: 79 CVVLTSFDDDDALASAIEVG-ARAYVLKTVRGAEIVDVVRAVAAGRVLLDERSLTRRRAA 137 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H LT E L ++EG T+ +IA LG++ TV N++ S++ K + R+ A+A Sbjct: 138 HEDPTSALTPSERRVLELVAEGLTNRDIAERLGVAEKTVKNHVTSMLSKMGLQRRTQAVA 197 Query: 239 Y 239 + Sbjct: 198 W 198 >gi|227497046|ref|ZP_03927297.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434] gi|226833464|gb|EEH65847.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434] Length = 222 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%) Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + A +S L+ RE E L ++ G ++ +IA L IS TV Sbjct: 133 MSPAVTTRILAATRRSAAAPSDTAPALSPREREVLAAVARGMSNAQIARELLISEATVKT 192 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ + K +R+GA+ A+R ++ Sbjct: 193 HLLRVNNKLGVDSRTGAVMEALRQGLI 219 >gi|146308673|ref|YP_001189138.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145576874|gb|ABP86406.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 914 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 10/113 (8%) Query: 144 LMLLFPKGRIILRDRLW-------EIGLLAAYQANMFKSYDVHW---GKDFELTGREVEC 193 + L LR+RL LLA A DV G +L+GRE+ Sbjct: 801 FVELLEHQPQWLRERLQLRPACPQRDALLAQLPAAREADEDVAPEESGPTEKLSGREMAV 860 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ G ++ EI+ L IS +TV + I K + R+ A+A A ++ Sbjct: 861 LQLIARGCSNQEISERLFISLHTVKTHARHINSKLGVERRTQAVARAKGLGLL 913 >gi|148652475|ref|YP_001279568.1| two component LuxR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571559|gb|ABQ93618.1| two component transcriptional regulator, LuxR family [Psychrobacter sp. PRwf-1] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 18/179 (10%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 L Q Q I+ + P LS D + ++ + +F + Sbjct: 53 LAQNQVDLVILDQNMP-------GLSGLDTAEQIREQGHQAKVLMFTVSDSGDDIHNALK 105 Query: 128 ---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 N Y ++ + + R LR L LAA A ++ ++ Sbjct: 106 LGVNGYLLKDMQPEQVALDI-------RKALRGELVVSSRLAAVLAQALRTPNLD-DIVS 157 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE++ + I++G ++ I LGIS +TV ++ I+ KT +TR +AV N Sbjct: 158 NLTSRELQVVKMIAKGHSNKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAVNN 216 >gi|16764498|ref|NP_460113.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179660|ref|YP_216077.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614644|ref|YP_001588609.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553080|ref|ZP_02346830.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993996|ref|ZP_02575088.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234058|ref|ZP_02659116.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237217|ref|ZP_02662275.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168822574|ref|ZP_02834574.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469443|ref|ZP_03075427.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737293|ref|YP_002114139.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249466|ref|YP_002146903.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262382|ref|ZP_03162456.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243879|ref|YP_002215996.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389724|ref|ZP_03216335.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930806|ref|ZP_03221679.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207857350|ref|YP_002244001.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584353|ref|YP_002638151.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911038|ref|ZP_04654875.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|6014730|sp|O54294|CSGD_SALTY RecName: Full=Probable csgAB operon transcriptional regulatory protein gi|2739237|emb|CAA05315.1| CsgD protein [Salmonella typhimurium] gi|16419657|gb|AAL20072.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62127293|gb|AAX64996.1| putative transcriptional regulator (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364008|gb|ABX67776.1| hypothetical protein SPAB_02394 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455807|gb|EDX44646.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712795|gb|ACF92016.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213169|gb|ACH50566.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240637|gb|EDY23257.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289893|gb|EDY29254.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938395|gb|ACH75728.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602169|gb|EDZ00715.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320265|gb|EDZ05469.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322437|gb|EDZ10276.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328037|gb|EDZ14801.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331948|gb|EDZ18712.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341044|gb|EDZ27808.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709153|emb|CAR33486.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468880|gb|ACN46710.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246354|emb|CBG24163.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992909|gb|ACY87794.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157683|emb|CBW17175.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912129|dbj|BAJ36103.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086418|emb|CBY96191.1| Transcriptional regulatory protein uhpA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223757|gb|EFX48820.1| Transcriptional regulator CsgD for 2nd curli operon [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616512|gb|EFY13421.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619764|gb|EFY16639.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622541|gb|EFY19386.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629692|gb|EFY26467.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632588|gb|EFY29334.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636917|gb|EFY33620.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641545|gb|EFY38183.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644846|gb|EFY41380.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649699|gb|EFY46129.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653990|gb|EFY50313.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658522|gb|EFY54784.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663380|gb|EFY59582.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670114|gb|EFY66254.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674821|gb|EFY70912.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676708|gb|EFY72775.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682630|gb|EFY78649.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686312|gb|EFY82294.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714130|gb|EFZ05701.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129411|gb|ADX16841.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195731|gb|EFZ80907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199879|gb|EFZ84968.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203139|gb|EFZ88169.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209142|gb|EFZ94079.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209647|gb|EFZ94576.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217898|gb|EGA02613.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222185|gb|EGA06569.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224956|gb|EGA09214.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229700|gb|EGA13823.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232925|gb|EGA17021.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240660|gb|EGA24702.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242973|gb|EGA26994.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247665|gb|EGA31610.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252666|gb|EGA36504.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255707|gb|EGA39459.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261744|gb|EGA45316.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266904|gb|EGA50389.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269946|gb|EGA53395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623745|gb|EGE30090.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628199|gb|EGE34542.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988033|gb|AEF07016.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 216 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|110637079|ref|YP_677286.1| fimbrial Z protein; signal transducer [Cytophaga hutchinsonii ATCC 33406] gi|110279760|gb|ABG57946.1| fimbrial Z protein; probable signal transducer [Cytophaga hutchinsonii ATCC 33406] Length = 212 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 13/210 (6%) Query: 49 MYALTEYVGASHFLL---VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105 M + Y+ ++L+ V+ L Q +++ + S+ DL + S+ D L Sbjct: 1 MDKIKVYIVDDYYLIREGVKKSLKQNSEIEIVGESNSLSDLATSIKTSQPDVLIFELNLC 60 Query: 106 TELFCPVFHTLPE-----NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160 + + L + + D L V G + +L Sbjct: 61 QQPIRDLIENLKKVNARVKFLIISDCDCE-LPLVMAVRAGVTGFVRKNVSKEELLHAVQQ 119 Query: 161 EIGLLAAYQANM----FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 Y +++ K + + D + RE+E L +I +G+++++IA IL IS T Sbjct: 120 VYTNKEYYVSDVTQVLLKGFLANQTSDSIFSDRELEVLRYICKGRSNEQIADILFISEKT 179 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + + +IM+K K + I +A+ N IV Sbjct: 180 IATHRRNIMKKAGVKKSTELIVWALDNKIV 209 >gi|331694132|ref|YP_004330371.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948821|gb|AEA22518.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 524 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +LAA + + + G L+ RE + L ++ G ++ IA L ++ TV +++ Sbjct: 439 AVLAAAGHRVRRRPALPAG----LSPREAQVLGLVARGLSNRAIAAELSLAPRTVGSHVE 494 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 + K TR A +A+R+ +V Sbjct: 495 HVYTKIGVSTRGAAAMFAMRHGLV 518 >gi|269958046|ref|YP_003327835.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306727|gb|ACZ32277.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 970 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A LT RE E LT ++EG ++ +I L IS TV+ ++++++ Sbjct: 888 ARRARVALPGTPRRHESVASLTDREEEVLTLVAEGLSNRQIGERLYISTKTVSVHVSNVL 947 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R+ A+ A R ++ Sbjct: 948 AKLGVSGRTEAVDVAHRKGLL 968 >gi|225175373|ref|ZP_03729368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169125|gb|EEG77924.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 378 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EL+ RE+E L I+ G ++ EI+ L +S TV + ++I K K R+ AIA A + N Sbjct: 315 ELSTRELEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGVKGRTQAIAMARKLN 374 Query: 245 IV 246 ++ Sbjct: 375 ML 376 >gi|70725661|ref|YP_252575.1| hypothetical protein SH0660 [Staphylococcus haemolyticus JCSC1435] gi|123748665|sp|Q4L8Q6|NREC_STAHJ RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|68446385|dbj|BAE03969.1| nreC [Staphylococcus haemolyticus JCSC1435] Length = 217 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 25/184 (13%) Query: 78 VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV----------FHTLPENITPP 123 V P L+ +++ + + + E + FH L Sbjct: 42 VMEHKPDVLIMDLSMPPGESGLIATSKISESFPETKILILTMYDDEEYLFHVLRNGAKGY 101 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + L V + G + + L N S DV Sbjct: 102 ILKNAPDEQLLLAVRTVYKGETYVD----------MKLTTSLVNEFVNHKHSDDVSTNDP 151 Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 F+ L+ RE+E L I++G + +IA L +S TV + IM K K++ + YA++ Sbjct: 152 FKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLDLKSKPELVEYALK 211 Query: 243 NNIV 246 ++ Sbjct: 212 KKLL 215 >gi|312961179|ref|ZP_07775684.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284837|gb|EFQ63413.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 217 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 14/179 (7%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR- 129 EQ L IV D ++ + + + QR +L +F A M+ Sbjct: 47 EQLLPDIVILDIRMPVLNGLGAARLLQ-----QRLPDLKVVMFTMDDSPDHLEAAMNAGA 101 Query: 130 --YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 Y + L + G + + A M + LT Sbjct: 102 VGYLLKDASRDEVIQALQQVAAGGEALNT------AVSARLLRRMTERQASGAAPAEHLT 155 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE + L ++ G ++ I LGI+ T ++ ++ K R+ A + +V Sbjct: 156 PRERQVLGLVANGMSNRAIGEQLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214 >gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C] gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C] Length = 259 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 3/160 (1%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 + + +E+ R + F + + R+ + Sbjct: 93 IDGITAAERILAGQQGTRSRIIVLTTFDVDEYVYAALRAGASGFLLKDTPPERLISAVTT 152 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 + + + + + D + LT RE + L ++ G +DEI Sbjct: 153 IAGGDMLFAPAVTRRLIEAYSARTEGPGGDDRTLSR---LTNREQDVLRLVARGLGNDEI 209 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L ++ TV ++ M K ++R+ A+A A +V Sbjct: 210 AAELVVTEATVKTHLHRTMTKLGLRSRAQAVAVAYEAGLV 249 >gi|297155312|gb|ADI05024.1| response regulator [Streptomyces bingchenggensis BCW-1] Length = 164 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 40/85 (47%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 IG L + + G LT RE + L ++EG + EIAV L S TV N I Sbjct: 79 IGQLVSQVGALRPGAVGRLGVPLGLTPRETDVLRLVAEGMGTGEIAVKLAYSERTVKNVI 138 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + + + R+ A+AYA+R + Sbjct: 139 QGLTTRLGLRNRAHAVAYALREGYI 163 >gi|291287073|ref|YP_003503889.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884233|gb|ADD67933.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 193 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE E L I+ GKTS EI +L IS+NTV+ + +++K + + YA Sbjct: 129 RNGSLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKLNLANSASLVHYAF 188 Query: 242 RNNIV 246 + +V Sbjct: 189 VSGLV 193 >gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 279 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 13/180 (7%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC-------S 132 S++P + + + K PV T P + + Sbjct: 100 SNYPSEWIERYQRDDFYKQDPAANLSHSSTMPVLWTDELYKEAPQFREMACLYGLRHGWT 159 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWG----KDFEL 186 + + + + I L++ + + + + H ++ Sbjct: 160 QSLHDQQHNESQISVARPNGPIDEVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKM 219 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A + Sbjct: 220 SERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 279 >gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 215 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 1/160 (0%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 V M L+ ++ ++ EL V P+ + D + L+ Sbjct: 54 VILMDLNLGSAEHSGVEIIAELQRGVDGPAPKILVLTTYQTESDILRALDAGALG-YLLK 112 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 P ++ R G A +T REVE L ++ G + E+ Sbjct: 113 DAPAEELLSAIRATARGETVLSPAIAATLVRRSSQPGPTITEREVEVLELLARGMGNKEL 172 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A + IS TV ++A + K TR+GA+A A+ I+ Sbjct: 173 AKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRII 212 >gi|310821776|ref|YP_003954134.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394848|gb|ADO72307.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca DW4/3-1] Length = 254 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L I++G ++ E A +L +S+ T+ ++ I RK R A+ +R Sbjct: 191 PLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRKG 250 Query: 245 IV 246 ++ Sbjct: 251 LI 252 >gi|300214009|gb|ADJ78425.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 218 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%) Query: 15 EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74 D+Q+ S L D + +D + ++ E + +R Sbjct: 7 ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIKEQEPDVILMDIRMPNMDGTVS 65 Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 +V +P + + + D + +F L + Y Sbjct: 66 TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 105 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + ++ G +I + ++ L + A DV +T E + Sbjct: 106 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + G ++ EI+ L +S TV N+++ I+ K + R+ +AV+N Sbjct: 166 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214 >gi|297622974|ref|YP_003704408.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164154|gb|ADI13865.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 386 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +S V LT RE + L I++G ++ I+ LG++ TV NY+ASI +K + Sbjct: 312 QLRSGSVALSGTEALTPREQQVLGRIAKGLSNSAISQELGLAPQTVRNYVASIYQKLGVR 371 Query: 232 TRSGAIAYAVRNNI 245 +R+ A+ +A + Sbjct: 372 SRAEAVVWARERGL 385 >gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D H L+ RE E ++ G T+ EIA L IS TV + ASIM K + +R Sbjct: 147 VDAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPE 206 Query: 236 AIAYAVRNNIV 246 + YAV ++++ Sbjct: 207 LVRYAVHHHLI 217 >gi|229822019|ref|YP_002883545.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567932|gb|ACQ81783.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 211 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L+ A + L+ RE+E L ++ G T+ + A L IS TV ++ Sbjct: 123 AVLSPAVATRLMG-QMRQPAPEPLSRRELEVLELVARGSTNRDAAKHLFISEATVKTHLL 181 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 K R+ A+A A + Sbjct: 182 HAYAKLGVNDRAAAVATAFSRGYL 205 >gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brevibacterium linens BL2] Length = 207 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D + V + G LL P L++ Y + Sbjct: 80 VFSALRAGASGFLLKDATAEDMITAVRVVAEGQSLLAPS---------VTRRLISEYVSG 130 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D +LT RE++ +T +++G + E+A L ++ TV +++ I+ K + Sbjct: 131 PKIAKDTAVLG--QLTDREIDVMTLVAKGHANAEVAEHLFLAEQTVKTHVSRILSKLGLR 188 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + +V Sbjct: 189 DRTQIVVAAYESGLV 203 >gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] Length = 213 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 11/129 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L T +LT + I G + P L LLA + N Sbjct: 90 VADALEAGATGYILKGVTASALTKSLRSIAKGEGFVSPG--------LASRVLLAIQKGN 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G +LT RE E L +++G ++ EIA L I TV +Y+ SI+ K + Sbjct: 142 TPTGDRGVLG---DLTHREEEILRRVAKGLSNKEIAAELSIQEKTVKHYMTSILSKLHAR 198 Query: 232 TRSGAIAYA 240 R A A Sbjct: 199 NRVEAALIA 207 >gi|119511948|ref|ZP_01631045.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463368|gb|EAW44308.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 69 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ELT RE E L I+ G + EI+ L IS TV N++ +I+ + + R+ A A Sbjct: 3 ELTPREKEVLRLIAVGANNREISQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 58 >gi|86606978|ref|YP_475741.1| LuxR family transcriptional regulator [Synechococcus sp. JA-3-3Ab] gi|86555520|gb|ABD00478.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 87 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 38/59 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE++ L I+ G T+ +IA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 11 LSERELQVLELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTSNRVALVRWALQWG 69 >gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 213 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA A+ D LT RE+E L + EG ++ +I+ L +S+ TV +++ Sbjct: 130 SALAPSVAHRLM--DRMRTPAEALTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLV 187 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+A A ++ Sbjct: 188 HIYAKLGVDSRTSAVAAATARRLI 211 >gi|315501090|ref|YP_004079977.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315407709|gb|ADU05826.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 220 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + + A + G+ ++ +I L+A + A + Sbjct: 94 RAGASGFLVKDTEPAELIHGVRVVARGDALIAPAVTRR--LIAEFAARTRHP--EPGPRL 149 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L ++ G ++DEIA L +S T +++ IM KT + R+ + A + Sbjct: 150 NALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYES 209 Query: 244 NI 245 + Sbjct: 210 GL 211 >gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] Length = 228 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S +H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 157 SGPIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRT 216 Query: 235 GAIAYAVRNNIV 246 +A IV Sbjct: 217 ELTRWAADRRIV 228 >gi|205353119|ref|YP_002226920.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272900|emb|CAR37830.1| csg operon transcriptional regulator protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 216 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|218782824|ref|YP_002434142.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218764208|gb|ACL06674.1| two component transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 16/201 (7%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109 + + VG + L ++ ++ K D I+ D + +A + K +RP Sbjct: 28 RSEFQVVGEADNGLAAIEMTRKCKPDLILL-DLSMPKMNGLATMRQLKK----ERPEVKI 82 Query: 110 CPVFHTLPENITPPAGMD--NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + ++ PA + + Y D + + + + + D L+ Sbjct: 83 LVITMHASQDYLIPALKEGADGYLLKGDDPQELFMAIRAIMDGKAYLSSD-------LSG 135 Query: 168 YQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + + D D LT RE E ++EG T+ +IA +L IS TV+ + ++M Sbjct: 136 QLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPKTVDKHRTNLM 195 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 +K + +A++N I+ Sbjct: 196 KKLDLHSAREVSNFALKNGII 216 >gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214 + L +L ++ EL+GRE E LT I ++ EIA L +S Sbjct: 123 EALLAPTVLTRVLDRFLRTLPDPEPPPSLRELSGREREVLTLIGRALSNAEIAARLCLSE 182 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV N++ +++RK + R A+ A + +V Sbjct: 183 ATVKNHVTAVLRKLGLRDRVQAVVTAYDHGLV 214 >gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] Length = 226 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY- 176 + + Y + T + + I + +G + +L L A + S Sbjct: 96 DVGSVIRAGAQGYVTKTISGSDL-ISSIKQVHEGYAVFSPKLAGFVLSAFQNGSSTNSSI 154 Query: 177 --DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 155 GGSIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISVKTVETHVSSVLRKLQLSNRT 214 Query: 235 GAIAYAVRNNIV 246 +A IV Sbjct: 215 ELTRWAADRRIV 226 >gi|301299416|ref|ZP_07205696.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853022|gb|EFK80626.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 218 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%) Query: 15 EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74 D+Q+ S L D + +D + ++ E + +R Sbjct: 7 ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGTVS 65 Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 +V +P + + + D + +F L + Y Sbjct: 66 TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 105 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + ++ G +I + ++ L + A DV +T E + Sbjct: 106 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + G ++ EI+ L +S TV N+++ I+ K + R+ +AV+N Sbjct: 166 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214 >gi|253773935|ref|YP_003036766.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161147|ref|YP_003044255.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B str. REL606] gi|300928412|ref|ZP_07143945.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|242376846|emb|CAQ31561.1| CsgD transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253324979|gb|ACT29581.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973048|gb|ACT38719.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli B str. REL606] gi|253977262|gb|ACT42932.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BL21(DE3)] gi|300463575|gb|EFK27068.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1] gi|323962640|gb|EGB58218.1| luxR family protein regulatory protein [Escherichia coli H489] gi|323973370|gb|EGB68559.1| luxR family protein regulatory protein [Escherichia coli TA007] Length = 216 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 243 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 171 NMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 +++ +V + D L+ RE E L W S GKT EIA +L I+ +TV ++ I++K Sbjct: 161 HLYHEENVRTSRHDDTLSARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLG 220 Query: 230 TKTRSGAIAYAVRNNIV 246 AI+ A+ NI+ Sbjct: 221 VNNAKHAISLAIELNII 237 >gi|289770298|ref|ZP_06529676.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700497|gb|EFD67926.1| two-component system response regulator [Streptomyces lividans TK24] Length = 235 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + R L F + + + + G+ + Sbjct: 75 GIEATRRIVAGGGRSRVLILTTFDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATG 134 Query: 151 GRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ LL AY ++ + + LT RE E L + +G T+ Sbjct: 135 DAVVAPSLTRR--LLDAYVHHLPAAGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNT 192 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ +TV ++ I+ KT ++ R A+ A +V Sbjct: 193 EIAERLHLAESTVKTHVGRILAKTGSRDRVQAVILAYETKLV 234 >gi|256392927|ref|YP_003114491.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359153|gb|ACU72650.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 236 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + G R +L + + G LL P GL+A + + Sbjct: 104 VFEALRSGASGFLGKGARPDALIDAIRTVARGDALLSPSATR---------GLIARFLSL 154 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E +++G ++ +IA L +S TV ++ M K + Sbjct: 155 QDTEPVHPSPLLTTLTDRERELTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGAR 214 Query: 232 TRSGAIAYAVRNNI 245 R+ + A + + Sbjct: 215 DRAQLVVLAYQTGL 228 >gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 87 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 39/62 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 9 PVTLSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVALVRWALQ 68 Query: 243 NN 244 Sbjct: 69 WG 70 >gi|332877914|ref|ZP_08445652.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684209|gb|EGJ57068.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 205 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 158 RLWEIGLLAAYQANMFKSY-------DVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 L ++ A + G L+ RE+E LT I G T+ EIA L Sbjct: 105 ALLQLQQHAHAHGRHLPQNMPRPYMTNTSPGDPNGLSTREIEVLTLIVRGLTNKEIADRL 164 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++ +IM K ++ SG YAV N + Sbjct: 165 CISTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 200 >gi|326334144|ref|ZP_08200369.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325948061|gb|EGD40176.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 215 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 4/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I G Y + T + + + + + RL L Sbjct: 78 PRYLALSVSDAAEDVIGTIRGGARGYVTKTITGSELVAAIQRVSGGDAVFSP-RLAGFVL 136 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A D + LT RE E + I+ G + E+A L IS TV +++++ Sbjct: 137 DAFAGTIAIADIDEDLDR---LTEREREVMRLIARGYSYKEVAGELFISIKTVETHMSNV 193 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +RK +R +A ++ Sbjct: 194 LRKLQLSSRHELTRWANDRRLL 215 >gi|170781406|ref|YP_001709738.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155974|emb|CAQ01108.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 224 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 9/163 (5%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 +R L + + + V T + + ++ + Y I G Sbjct: 59 LRMPGLDGVGATARIREEAPGVRVLVLTTYETDASILTAIEAGASGYLLKAAPEEEILAG 118 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + + G+ AA + + G L+ RE + L ++ G+T+ Sbjct: 119 VRAVARGEVALAP------GIAAALVRQVARPAAEPAGPTPTLSPRETQVLALVAGGRTN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA+ L ++ TV ++ + K R+ A+ A+ ++ Sbjct: 173 ARIALELHVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215 >gi|116249431|ref|YP_765272.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254081|emb|CAK12478.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 959 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 3/154 (1%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 S+ + + V Q EL P + G R G L G Sbjct: 806 SDLEGWEAVAQSWAELSQPF--RQAYALMQAGGAAVSAGQRAKGAGHFRRGADLAHSTGA 863 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 +L +++ + A K D+ LT RE E L ++ G+++ EIAV L I Sbjct: 864 SLLGNQIETLAKKARIDLGNGKEGDMPKA-PLGLTDREFEVLRLLAAGQSNREIAVNLFI 922 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S T + ++++I+ K + +R A A A R IV Sbjct: 923 SSKTASVHVSNILSKLSVPSRGAAAAMAHRLRIV 956 >gi|302557464|ref|ZP_07309806.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475082|gb|EFL38175.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 230 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 10/140 (7%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 E VF L + D L + + G LL P+ L + + A Sbjct: 99 ETDAYVFEALQAGASGFMLKDAGPAELLHAIRVVAAGDALLAPRITRRLIGQFTSQRVAA 158 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + LT RE E L + +G ++DEI L +S T +++ M Sbjct: 159 QAAEDRLSV----------LTQREREVLALVGQGLSNDEIGAELCLSPATARTHVSHAMV 208 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K + R+ + A R +V Sbjct: 209 KLGARDRAQLVVVAYRTGLV 228 >gi|258655128|ref|YP_003204284.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558353|gb|ACV81295.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 982 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE E L ++ G T+ +I L IS TV+ +I++++ K R+ A+A A R + Sbjct: 915 LTGREEEVLRLVAAGLTNRQIGERLYISGKTVSVHISNVLGKLGVGGRAEAVAVAHRRGL 974 Query: 246 V 246 + Sbjct: 975 L 975 >gi|302875540|ref|YP_003844173.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307690067|ref|ZP_07632513.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302578397|gb|ADL52409.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 220 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 80/233 (34%), Gaps = 22/233 (9%) Query: 15 EDEQRTSF--VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72 D+Q+ + + + D + + + + V + VR + Sbjct: 7 ADDQKIVREGIKMILSLYDEINVIGEAENGEELINLLQNFMADV---ILMDVRMPIIDGV 63 Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 + I+ + V + +D+Y +F + D Sbjct: 64 EATKIIKERYIHTKVIILTTFNEDEY-------------IFKAIKNGADGYLLKDVGSEF 110 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + + G MLL P+ + + I ++ +D K LT RE++ Sbjct: 111 IINAIRSVYNGAMLLDPEVTVKVVKAFNSI----TNESKNSNEFDNINNKLNSLTPREID 166 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +++GK++ +I L ++ TV NY+ I+ K +R+ + + I Sbjct: 167 VAKLVAQGKSNKDICRSLFLTEGTVKNYVTRILGKLELNSRTELAVFINQAGI 219 >gi|269836626|ref|YP_003318854.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785889|gb|ACZ38032.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 1034 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 57/166 (34%), Gaps = 11/166 (6%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 + +A+ + L F L + Y V + L Sbjct: 872 QPLAMLTAHRTLARLATLRRDFPTARQHLAGAERLATSFEAPYVLALVQVTHAELLLASG 931 Query: 148 FPKGRIIL-------RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 L + L LLA + V G L+ RE+E L ++EG Sbjct: 932 RGHEAGGLLAAARATAEELGAKPLLAVIDHLEPRPTAVPGG----LSAREIEVLRLVAEG 987 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T E+A L IS TV ++ SI K +R+ A ++A + +V Sbjct: 988 LTDAEVAERLSISPRTVGGHLQSIYNKLGISSRTAATSFAHKFGLV 1033 >gi|297204156|ref|ZP_06921553.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714163|gb|EDY58197.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 232 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 45/84 (53%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ A + V + LTGRE + LT ++ G+++ EIA L I+ TV ++++ Sbjct: 139 ALIDAVRNRRAVENSVPGNRLGTLTGRERDVLTAVASGESNAEIADRLCIAPTTVKSHVS 198 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I+ K + R A+ +A + +V Sbjct: 199 NILTKIGARGRVQAVVFAYESGLV 222 >gi|300857851|ref|YP_003782834.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685305|gb|ADK28227.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205581|gb|ADL09923.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330135|gb|ADL20329.1| Two component LuxR family transcriptional [Corynebacterium pseudotuberculosis 1002] gi|308275816|gb|ADO25715.1| Two component LuxR family transcriptional [Corynebacterium pseudotuberculosis I19] Length = 225 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 14/150 (9%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------D 157 L V + I+ Y + T A + + + + D Sbjct: 70 ARFLALSVSDAAEDVISVIRAGARGYVTKTISGAELIDAITRVHTGDAVFSPRLAGFVLD 129 Query: 158 RLWEIGLLAAYQANMFKSY-DVHWGKDFE------LTGREVECLTWISEGKTSDEIAVIL 210 + A + ++ +V GK LT RE+E L ++ G T EI L Sbjct: 130 AFARPDPMGAGVVDSPETDREVEEGKQVSDPIVDALTRRELEVLRLLARGYTYKEIGAQL 189 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240 IS TV + ++I+RKT R +A Sbjct: 190 FISVKTVETHASNILRKTQQSNRHALTRWA 219 >gi|311234756|gb|ADP87610.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris RCH1] Length = 250 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + + + F V + G + P G LA + D Sbjct: 122 GADGLLLKEADHEEVRFAVRSVLAGGFFVSPSV----------AGRLATRCRQGWALEDR 171 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G LT RE E L +++EG + EIA +L +S TV + A+ M K + + A Sbjct: 172 RTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRA 231 Query: 239 YAVRNNI 245 +A R + Sbjct: 232 FAQRQGL 238 >gi|218514607|ref|ZP_03511447.1| autoinducer transcriptional regulator protein [Rhizobium etli 8C-3] Length = 161 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ECL W + GK +I+VILGIS +T +Y+ + K T S A + AV+ I Sbjct: 99 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 158 Query: 246 V 246 + Sbjct: 159 I 159 >gi|223935483|ref|ZP_03627400.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895893|gb|EEF62337.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 233 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 16/225 (7%) Query: 21 SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80 + + S R+ ++ L E + + +E ++ S Sbjct: 5 VSIPQVQPSSRAPLRVALVEDQKEIRENWTRLIESF-SDFKCVCTCSTGEEAL--RVIPS 61 Query: 81 DWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLT 134 P ++ + L + + + + ++ ++ + Y Sbjct: 62 VRPDVILMDIFLPRMSGIECTARFKESLPKTQIIILTAVDDDEMVFLALEAGADGYLLKR 121 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 +R L+ + G + + +A F+ + L+ RE E L Sbjct: 122 TKPTDLRAALLDVLSGGAPMTSE-------IARRVVESFRRVSRNRQDTIRLSAREEEVL 174 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +S+G ++ EIA + +S TV +++ I K ++R+ A+A Sbjct: 175 VMLSKGYSNKEIADKIDLSVETVRSHLKHIYEKMHVRSRTEAVAR 219 >gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 235 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 4/139 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---- 167 V+ +L + D L + + G ++ P L +R A Sbjct: 91 VYASLRAGASGFLLKDTLAADLLSAIRTVAAGDAVVAPSVTRRLLERFVGTNTAGASPTG 150 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + LT RE E L ++ G ++ EIA + I TV +++ I+ K Sbjct: 151 TTGTTGTASLASALAADTLTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAK 210 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R A+ YA + +V Sbjct: 211 LDLRDRVQAVVYAYESGLV 229 >gi|227892373|ref|ZP_04010178.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|227865780|gb|EEJ73201.1| response regulator [Lactobacillus salivarius ATCC 11741] Length = 220 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%) Query: 15 EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74 D+Q+ S L D + +D + ++ E + +R Sbjct: 9 ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGTVS 67 Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 +V +P + + + D + +F L + Y Sbjct: 68 TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 107 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + ++ G +I + ++ L + A DV +T E + Sbjct: 108 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 167 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + G ++ EI+ L +S TV N+++ I+ K + R+ +AV+N Sbjct: 168 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 216 >gi|70729936|ref|YP_259675.1| sensory box transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344235|gb|AAY91841.1| sensory box transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 495 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELT 187 Y + D++ + + L ++RD W L AN+ +S ELT Sbjct: 372 YLLVLMDISERKRSELELVGAIEEVMRDASWFSQTLIEKLANVRNTRSAQAPAVTSAELT 431 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE E L I +G EIA L ++ NTV N++A++ K +R AI +A + Sbjct: 432 TREREVLGLIYQGLADKEIAAQLQLAPNTVRNHVATLYSKLDVHSRGEAIVWARERGL 489 >gi|16125332|ref|NP_419896.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15] gi|221234071|ref|YP_002516507.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13422382|gb|AAK23064.1| transcriptional regulator, LuxR family [Caulobacter crescentus CB15] gi|220963243|gb|ACL94599.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] Length = 137 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L A + +F+ D LTG+E++ L ++ G+++ EIA LG+S NTV ++ + Sbjct: 55 LAARARPEIFQRNDAALAS-LSLTGQEIKVLERLAAGRSNKEIARDLGLSPNTVKTHVGN 113 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 + K R+ A+ A +++ Sbjct: 114 LYAKLEVSRRTQAVGKARELSLI 136 >gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 237 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 10/186 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V +D + L + + L +F + + Y Sbjct: 51 QQMLPDVVITDVMMPRLDGYGLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 110 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMF------KSYDVHW 180 FD + + + + + +L++ ++G +A + ++ Sbjct: 111 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADADMGQMAKQITEIRSLLAQAEALPAQE 170 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA Sbjct: 171 PVQHSFTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 230 Query: 241 VRNNIV 246 +++ +V Sbjct: 231 LQHRLV 236 >gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 494 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTG 188 Y + ++ + + L +++D W L AN+ + V ELT Sbjct: 368 YLLVLMNITERKRSELELVAAIEEVMKDASWFSRTLIEKLANVKSINAQVPSVSFTELTA 427 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A + Sbjct: 428 RERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWARERGL 484 >gi|271961795|ref|YP_003335991.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504970|gb|ACZ83248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 18/189 (9%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLP 117 L + +++D +V + + D + P ++ L Sbjct: 33 LAALKALESRRVDVVVM---------DIRMPRMDGVIATREIQRLDGPPKVLVLTTFDLD 83 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 E+ L I + +G I+ L+ A D Sbjct: 84 EHALAALRAGASGFMLKDAPGEEIIAAIRHVHRGDSIIAPATTRR-LIGRLVAKADTDPD 142 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT RE E ++ G ++ EI V L +S TV ++ I+ K + R A+ Sbjct: 143 AVLKV---LTEREREVFLSLARGASNAEIGVELFLSETTVKTHVGRILTKLGLRDRVQAV 199 Query: 238 AYAVRNNIV 246 A + +V Sbjct: 200 VLAYESGVV 208 >gi|111224125|ref|YP_714919.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111151657|emb|CAJ63376.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 270 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 28/192 (14%) Query: 55 YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114 GAS F+L ++ + +V D VR + + V +R + F Sbjct: 102 RAGASGFML------KDVRPAELV------DAVRVVFRGDALLAPTVTRRLLDRF----- 144 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 T P+ D + R R G L R I AA + Sbjct: 145 ----ARTLPSVADASAPASDGPAGRRRAGPGPLGRPVRGISPPD-------AAGVGGEGE 193 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE L ++ ++ EIA L ++ TV ++++++RK + R Sbjct: 194 WGARPRSGLAELTEREAVVLRLVALALSNAEIATELVLTEATVKTHVSAVLRKLGLRDRV 253 Query: 235 GAIAYAVRNNIV 246 A+ +A + +V Sbjct: 254 QAVVFAYDHGLV 265 >gi|30316455|gb|AAP31397.1| hypothetical two-components response regulator protein [Pseudomonas putida] Length = 217 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +LT R+ E L I++GKT+ EIA L IS TV +++S+++ +R+ A Sbjct: 159 QLTHRQQEVLRLIAQGKTNKEIAKALSISPFTVRIHVSSLLKLLGVSSRTAAAVK 213 >gi|56413870|ref|YP_150945.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168244733|ref|ZP_02669665.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264076|ref|ZP_02686049.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467083|ref|ZP_02700925.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444624|ref|YP_002040395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450147|ref|YP_002045140.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197362793|ref|YP_002142430.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128127|gb|AAV77633.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|154269337|gb|ABS72185.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden] gi|194403287|gb|ACF63509.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408451|gb|ACF68670.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195630363|gb|EDX48989.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094270|emb|CAR59776.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336437|gb|EDZ23201.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347328|gb|EDZ33959.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 216 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris AB-18-032] gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris AB-18-032] Length = 211 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 14/134 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L R + V + G + P +A Sbjct: 92 VFAALRAGARGYVLKGARRQEIVRSVRVVADGEAIFGP--------------AIATRLMG 137 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F + ELT RE E LT I++ T+ +IA G+S TV N++++I K Sbjct: 138 YFAGLARNEPAFPELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVA 197 Query: 232 TRSGAIAYAVRNNI 245 R+ AI+ A + Sbjct: 198 DRAQAISMAREQGL 211 >gi|298249219|ref|ZP_06973023.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547223|gb|EFH81090.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1032 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 4/132 (3%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 T Y L D + L+ D L I A + Sbjct: 898 GPTLAQAEPEGYLRLFADEGEVMAHLLTRIAPFTTASPDYLQRIQAAIAPAWHTQPDPST 957 Query: 179 HWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 G L+ RE L ++EG ++ +IA L +S +TV ++ ++ K R+ Sbjct: 958 QAGPRSTPYEPLSARERSVLQLMAEGYSNQQIAEHLILSLHTVKLHVKHLLAKLGATNRT 1017 Query: 235 GAIAYAVRNNIV 246 A+A A +I+ Sbjct: 1018 QAVARARALHIL 1029 >gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 32/235 (13%) Query: 13 NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72 NR + + + R L R+ P + + Y+ S + R + Sbjct: 3 NRIQPLMDALLDSVHDRELFLRRLEPCAQALGFEYY-----SYIVFSCYPASRPKM---- 53 Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC------PVFHTLPENI--TPPA 124 ++ ++P + + V+ + + PE Sbjct: 54 ----LIEGNYPAEYLEDYRKLRVYLQDPVIDQAHHSTLQFHWDEEFYQDRPELWWRMAQF 109 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---------LWEIGLLAAYQANMFKS 175 G+ + D R+G++ K LW + S Sbjct: 110 GIREGWSQSIKD-CYGRLGILTFAGKKIPEQSPEAGARNETFFLWLAQIAHKTLREALIS 168 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + KD LT RE + L W SEGKTS+EIA+++G+S TVN +I + ++K + Sbjct: 169 VNDEAIKDV-LTLREKDILRWCSEGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222 >gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ST398] gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11] gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46] Length = 200 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 FH L + L + + G + D L+ + +N Sbjct: 74 FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 124 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L+ RE+E L I++G + EIA L +S TV + IM K K+ Sbjct: 125 NQDTANTSDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 184 Query: 233 RSGAIAYAVRNNIV 246 + + YA++ ++ Sbjct: 185 KPELVEYALKKKLL 198 >gi|118593225|ref|ZP_01550610.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118434116|gb|EAV40772.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 23/231 (9%) Query: 39 LDCTVSWTMRMYALTE----------------YVGASHFLLVRWDLFQEQKLDSIVSSDW 82 + ++ A++E +GA+H L+ + + + W Sbjct: 1 MLDQTELKSKLRAISEANAAHHVLDILESNLRRMGATHILITGLPMPNRPIDNLVQRFRW 60 Query: 83 P---FDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P D + +LS D L + E+ A L V Sbjct: 61 PDQRNDGIESTSLSANDSALMLGLGSNRARVWTISAGDMEHSDLLASAGEGSQVLVIPVT 120 Query: 139 RIRIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLT 195 + +F G + ++ L + LAA + + V G + L+ RE + L Sbjct: 121 ELYPFQAFVFASGPALQVNKYDLSNLEALAAAAFSRLRELGVISGQRPGALSTRERKVLE 180 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + GKT+ EIA +L IS+ TV+ ++ + K ++ + A+R + Sbjct: 181 LTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231 >gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] Length = 213 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 18/132 (13%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F ++ + D+ L ++ + +G +L R L +R E L+ Sbjct: 93 IFASMDAGVDGYLLKDSDTSELRENIRKAVLGETVLSDSIRAHLLNRRPENDPLSV---- 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE + L WI+ G ++ +IA L IS TV +I +++RK Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVH 194 Query: 232 TRSGAIAYAVRN 243 +R A + Sbjct: 195 SRVAATILYLEQ 206 >gi|300087957|ref|YP_003758479.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527690|gb|ADJ26158.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 Y V + + + + E+ A S + Sbjct: 96 RAGARGYILKEASVDELVAAVREVAAGRHYLST----ELSQRAIAYYIKQPSAEEETSPY 151 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +L+ RE E L + T +IA L IS TV + A++MRK K R+ I + ++N Sbjct: 152 EQLSNREREVLHLVVRDYTGADIAKKLFISPRTVEAHRANLMRKLGMKNRTQLIKFCLQN 211 Query: 244 NIV 246 I+ Sbjct: 212 GIL 214 >gi|307150361|ref|YP_003885745.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980589|gb|ADN12470.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 224 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 3/177 (1%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 QEQ I+ D L+ ++ +++ K + + L + + + A + Sbjct: 51 QEQLKPDIILMDIDLPLLDGISATQRIKRDDTATKI--LALSAYDHDTQVLGMLASGADG 108 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 YC + + + + L+ G + L R+ + + L+ R Sbjct: 109 YCLKNIEWEELLVIIRLISHGG-VYLDPRIAHKVSHLLKSGSFAVETNTTPKAVTVLSER 167 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+EG ++ +IA L +S T+ +Y+ ++ K + R A A AVR ++ Sbjct: 168 ERLILKLIAEGFSNKKIAEQLFLSPGTIKSYVRMLLNKLSVDDRVQAAAKAVREGLI 224 >gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 87 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 39/62 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T+ R + +A++ Sbjct: 9 PVSLSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRVALVRWALQ 68 Query: 243 NN 244 Sbjct: 69 WG 70 >gi|90961071|ref|YP_534987.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820265|gb|ABD98904.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 218 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%) Query: 15 EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74 D+Q+ S L D + +D + ++ E + +R Sbjct: 7 ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGTVS 65 Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 +V +P + + + D + +F L + Y Sbjct: 66 TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 105 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + ++ G +I + ++ L + A DV +T E + Sbjct: 106 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + G ++ EI+ L +S TV N+++ I+ K + R+ +AV+N Sbjct: 166 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214 >gi|297197881|ref|ZP_06915278.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146901|gb|EDY61655.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 256 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDE 205 F + L ++L + Q + + + + D LT RE L + + T+ Sbjct: 148 FTDDELRLAEQLQPLLAAVEQQRQLLRRLNAPSEEAADLALTPRETTVLLLLGDALTAVS 207 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I LGIS TV+ +IA+I RK T R + +A R +V Sbjct: 208 IGRRLGISERTVHKHIANIYRKLGTHDRVSTVLHAQRLGLV 248 >gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551] gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319] gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551] gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319] Length = 74 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC 53653] Length = 213 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 16/196 (8%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--PENITPPA 124 D + S + DLV A+S + + P + L E + P Sbjct: 17 DPISREGTISQLRQHPEVDLVDEAAVSGAGVAVLLAESPDQALLSQLRRLVRSEGLHPVL 76 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKG------RIILRDRLWE-------IGLLAAYQAN 171 + + DV +G ++ + R + + +G L + + Sbjct: 77 VVSLIREAELLDVIECGVGAIVWRHEATGGRLLRAVTAAFHGDGDLPSDLLGRLISQVGS 136 Query: 172 MFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H + LT RE++ L ++EG + EIA L S TV N + + + Sbjct: 137 LRPGTSGHLATQPSGLTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDL 196 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ A+AYA+R + Sbjct: 197 RNRAHAVAYALREGYI 212 >gi|311740351|ref|ZP_07714180.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304535|gb|EFQ80609.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ +I L +S TV +++ I K ++R+ A+A A + Sbjct: 163 LTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 222 Query: 246 V 246 + Sbjct: 223 L 223 >gi|29827472|ref|NP_822106.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29604571|dbj|BAC68641.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 235 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 11/193 (5%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVF 113 L+ + + + D P ++ + + E D Q L +F Sbjct: 37 LVATSEAATGTEAVRLARQDPPDVVLMDVRMPEMDGIEATRQICGSPETADVKVLILTMF 96 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 + + + + + ++ ++ L+A + Sbjct: 97 DLDEYVYAALRAGASGFLLKDTPPSELLAAVRVIAAGEALLAPAVTRR--LIAEFVHRPE 154 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S + D +T RE E LT I+ G ++ EIA L + TV +++ ++ K AT+ R Sbjct: 155 PSRPLRRTLD-GVTEREREVLTLIACGLSNTEIAERLYLGIATVKTHVSHLLTKLATRDR 213 Query: 234 SGAIAYAVRNNIV 246 + + A + +V Sbjct: 214 AQLVIVAYESGLV 226 >gi|295838096|ref|ZP_06825029.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295826844|gb|EFG65089.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + +L P V T + ++ R Sbjct: 66 MDLQLGAGIDGVEATRRLLALPAPPRVLVLTTYDTDADVTRAVNAGATGYLLKAERPE-- 123 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 LF R R +A ++ ELT RE + L +S+G + Sbjct: 124 --ELFAAIHAAARGRTALSPPVAHRVLAHLRAP------RPELTPRERDILAQLSQGLGN 175 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L IS TV ++ + +K TR+GA+A A ++ Sbjct: 176 RDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 218 >gi|302540802|ref|ZP_07293144.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302458420|gb|EFL21513.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 221 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ +A + + L + F G + + Sbjct: 49 DVVLMDIRMPLLDGLAATRRITEDPALAEVKVVMLTTFELDEYVFEAIRGGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + A + ELT RE E + Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAARSKEPAPASVLA--ELTEREREVMA 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|239987130|ref|ZP_04707794.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 242 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 8/240 (3%) Query: 12 LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71 + + TS P R L L + E VG + +L + Sbjct: 1 MTQPTPASTSDAREAPIRVLLADDQALLRSAFRVLVDSEPDMEVVGEAADGAQAVELARA 60 Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131 D +V D +A + L + F + + + Sbjct: 61 TGAD-VVLMDIRMPGTDGLAATRMISADPELAAVRVVMLTTFEVDEYVVQSLRAGASGFL 119 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----L 186 + + + + ++ GL+A + A S + ++ L Sbjct: 120 GKGAEPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSQEGPDSAEYAERLAAL 177 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TGRE E L ++ G +D IA L +S TV ++ M K + R+ + A + +V Sbjct: 178 TGREREVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 237 >gi|226363828|ref|YP_002781610.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242317|dbj|BAH52665.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 546 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDVHWGKDF 184 ++ AR+R + L+ ++ A Y+ + + Sbjct: 421 APYECARVRESIALVCRGLGDDDTAQMEHDLASATYRQLGALPDLERLRAEFRSDAADST 480 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT REV L ++ GK++ +A L +S TV ++++I K +RS A AYA ++ Sbjct: 481 PLTPREVCVLRLVAAGKSNRAVATDLFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHH 540 Query: 245 IV 246 +V Sbjct: 541 LV 542 >gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 11/166 (6%) Query: 83 PFDLVRCMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 P ++ + L E +R E+ V T + ++ R Sbjct: 50 PAVVLMDLQLGEGIDGVEATRRIAALEVHVLVLTTYDTDADITRAIEAGATGYLLKAERP 109 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 LF R + R +A + + G LT RE++ L ++ G Sbjct: 110 E----ELFAAIRAAAQGRTALSAPVATRVMDRMRG-----GGRPSLTERELDILGQLARG 160 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L IS TV ++ I K TR+GA++ A ++ Sbjct: 161 LGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVSVAKEQRLL 206 >gi|325272909|ref|ZP_08139236.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] gi|324101953|gb|EGB99472.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] Length = 665 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 124 AGMDNRYCSLTFDVARIRIGLML--LFPKGRIILRDRLWEIG---LLAAYQANMFKSYDV 178 G + + AR + L + L+++L + ++ Sbjct: 537 DGQAAQLLPGLLEAARGGVLQPFQPLLQRHPQWLQEQLLARAGCPVQVDLLGHLPALPSA 596 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G L+GRE+ L I++G ++ +I+ L IS +TV + + I K + R+ A+A Sbjct: 597 PCGSSEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVA 656 Query: 239 YAVRNNIV 246 A ++ Sbjct: 657 KAKSLGLL 664 >gi|333020553|gb|EGK39813.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-227] Length = 190 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 109 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 169 FKKIAVKNRTQAVSWA 184 >gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] Length = 214 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 13/123 (10%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 D + D+ + G +L L + L E Sbjct: 99 NGADGYLLKDQEPEQILEDIQKAAKGQTVLSASMNQALAECLREESF------------- 145 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + ELT RE L I++GKT+ EI L IS TV ++ ++ K + ++R A Sbjct: 146 SKERRVSELTEREKSVLKLIAQGKTNKEIGKALEISDGTVKVHVKHVLHKLSFRSRVEAA 205 Query: 238 AYA 240 +A Sbjct: 206 VWA 208 >gi|282865368|ref|ZP_06274420.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559841|gb|EFB65391.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 8/176 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCP---VFHTLPENITPPAGMDNRY 130 + P ++ + + D L RP ++ P V T ++ + Sbjct: 42 ELAERHRPDVVLMDIRMPRMDGLEALRRLTRPGTVYPPKVVVVTTFDDDEYVQRALGEGA 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + +L+ + L + + + L+ RE Sbjct: 102 SGFLI---KDSGPALLVEAIRAAASGEALVSPAITVRLLRRLNNAVPTSREPHTALSERE 158 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + + ++ G T+ EIA L IS TV ++ ++ K + + R A+A + +V Sbjct: 159 KDLVRLVARGLTNAEIATELTISVGTVKTHLGNVQTKLSARNRVEIAAWAWESGLV 214 >gi|257069626|ref|YP_003155881.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560444|gb|ACU86291.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 222 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 8/175 (4%) Query: 77 IVSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +V P L+ + + + D ++ P + F + + Sbjct: 42 LVQKHRPDVLLMDVRMPKLDGIAATKAVSDLPSPPKIIMLTTFDMDEYVFQALEAGASGF 101 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + ++ +L + L +AN D H G + +LT RE Sbjct: 102 LLKDTPPQELARAVHVVAGGD-AMLSPTITRRMLSHFSEANPGSRQDRHPGLE-QLTDRE 159 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E L + G ++ +I + L +S TV +++ I K R A + Sbjct: 160 TEVLGAVGAGLSNAQIGMRLFMSEATVKAHVSKIFAKLDCTNRVQIAIIAHEAGL 214 >gi|312200374|ref|YP_004020435.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231710|gb|ADP84565.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + R L V + G LL P + DRL + Sbjct: 90 VFGALRAGASGFLLKRTRPEDLIAAVHTVAAGDALLSPSVTRRVIDRLTRQPVPDLAGTR 149 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +LT RE E L +++G ++ EIA L + +TV + ++ K + Sbjct: 150 ALA----------DLTPREREVLELMAQGLSNREIARHLVVEESTVRTHAKRVLAKLGLR 199 Query: 232 TRSGAIAYAVRNNI 245 R A+ +A N I Sbjct: 200 DRIQAVIFAYENGI 213 >gi|296126426|ref|YP_003633678.1| LuxR family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018242|gb|ADG71479.1| transcriptional regulator, LuxR family [Brachyspira murdochii DSM 12563] Length = 320 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 38/63 (60%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I K+ K R Sbjct: 253 SNIEDIENAVNLTRREREILSYLLDGKTNKEVSLILDISLNTVNNHVANIYEKSGVKNRV 312 Query: 235 GAI 237 + Sbjct: 313 ELV 315 >gi|159039733|ref|YP_001538986.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918568|gb|ABV99995.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 228 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + + + + L Sbjct: 92 RFLALSVSDAAEDVIGLIRSGARGYVTKTISPDDLAAAVRRVADGDAVFSP-------RL 144 Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + + F + D EL T RE E L ++ G EIA L IS TV +++ Sbjct: 145 AGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 204 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++RK +R +A +V Sbjct: 205 NVLRKLQMSSRYELSRWAADRRLV 228 >gi|239978812|ref|ZP_04701336.1| two-component system response regulator [Streptomyces albus J1074] Length = 213 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D V + +E+ + P L F + + Sbjct: 47 DVVLMDVRMPEVDGIRATERVLAAGGERAPRVLVLTTFENDDHVLAALRAGAAGFLLKRA 106 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ ++ + + L + ++ + W LT RE E L Sbjct: 107 EAETLLHAVRVVARSDTLLFPSSVRALAL----AHDPRRAAEPPWAAR--LTDREREVLH 160 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G T+ EIA L + TV +++A+++ KT T+ R+ A+ A + Sbjct: 161 LMATGLTNAEIAARLTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGL 210 >gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 200 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 23/173 (13%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYC 131 V + P L+ + + + + F + Y Sbjct: 43 VKTHQPDLLITDIEMPHLSGLELAAEVKKLGLGTRVVIVTTFGRAGYLRRALEAGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + ++ GR I LLAA W ++ LT RE Sbjct: 103 LKDAPSSELAEAVRRVYLGGRAIDP-------LLAA----------QAWSEEDPLTDRER 145 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L EG+TS EIA LG+S TV NY++ + K + R A A Sbjct: 146 RVLRLAGEGRTSAEIAAELGLSEGTVRNYLSEAISKLGAQNRVEAARIAREKG 198 >gi|38233207|ref|NP_938974.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199466|emb|CAE49117.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 231 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 14/159 (8%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD-------VARIRIGLMLLFPKGRI 153 + + L V + I+ Y + T + R+ G + P+ Sbjct: 72 IGRNRRFLALSVSDAAEDVISVIRAGARGYVTKTISGAELVDAIRRVHDGDAVFSPRLAG 131 Query: 154 ILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFE------LTGREVECLTWISEGKTSDEI 206 + D + A N +S V GK LT RE+E L ++ G T EI Sbjct: 132 FVLDAFARPDPVGAGVVNAPESDRAVEEGKPVADPIVDALTRRELEVLKLLARGYTYKEI 191 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A L IS TV + ++I+RKT R +A +++ Sbjct: 192 AAELFISVKTVETHASNILRKTQQSNRHALSRWAQSHDL 230 >gi|313202129|ref|YP_004040787.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|312441445|gb|ADQ85551.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 232 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 7/169 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + K + L + + V + + + Y Sbjct: 71 DVVLIDLNMKGLNGIETLRRFKIESSL-QARFVVLTVSDAEDDLLEALRAGADGYLLKDM 129 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + G +++D L E+ A + K+ D D LT RE E L Sbjct: 130 EPEDL-CASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADD-----DVALTDREQEILQ 183 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +++G + IA LGIS TV +I ++ K +R A +A R Sbjct: 184 CLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRKK 232 >gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured bacterium 70] Length = 210 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K + + LT RE+E L I G ++ EIA LG+S NTV + A+IM Sbjct: 135 KPPSLKGERTHGLTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKT 194 Query: 234 SGAIAYAVRNNIV 246 + + YA+ N +V Sbjct: 195 AELVVYAISNGLV 207 >gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 210 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 19/138 (13%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V L D L ++ R+ G ++ P+ IL D LA Sbjct: 92 HQGVLAALESGAHGCLLKDAAGAQLVTELRRVLRGERVVDPR---ILPDAGQRSDALA-- 146 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 LT RE E L ++G+T+ EIA G++RNTV Y+ S + K Sbjct: 147 --------------RSGLTRREYEVLRLAAQGQTNPEIAESTGLARNTVKTYLQSALHKL 192 Query: 229 ATKTRSGAIAYAVRNNIV 246 + R AI A ++ Sbjct: 193 GARNRVEAIGKASEAGLL 210 >gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli] Length = 217 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + + P V T + ++ R Sbjct: 64 MDLQLGEGIDGVETTRRLRAEPPAPHVLVLTTYDTDADVTRAIEAGATGYLLKAERAED- 122 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 LF + + R +A + + LT RE + L +S G ++ Sbjct: 123 ---LFTAIQAAAQGRPALSPPVADRVMSRLR------NPRPALTPREQDILAHLSRGLSN 173 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS TV ++ I K TR+GA+A A ++ Sbjct: 174 HAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 216 >gi|329928715|ref|ZP_08282564.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937496|gb|EGG33914.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 216 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 73/180 (40%), Gaps = 10/180 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127 E+ L ++ L+ + + + + +R ++ + T ++ + Sbjct: 37 EEALSLLMDGLHADVLLMDIRMPVCDGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALR 96 Query: 128 NR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKD 183 N Y RI G+ + +I D ++ G+L + +S ++ + Sbjct: 97 NGASGYLLKNIPPDRIIQGIKTVHDGNMLIHPDIARKLTGMLRPTPQPVPRSAEL---EQ 153 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT E + + I+EG ++ EIA L +S TV NY+ I+ K + R+ + ++ Sbjct: 154 FGLTPAEKKVVALIAEGLSNKEIAAQLYLSEGTVKNYVTDILGKLNLRDRTQIAIFYLKK 213 >gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D H L+ RE E ++ G T+ EIA L IS TV + ASIM K + +R Sbjct: 147 VDAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPE 206 Query: 236 AIAYAVRNNIV 246 + YAV ++++ Sbjct: 207 LVRYAVHHHLI 217 >gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 219 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 17/194 (8%) Query: 59 SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHT 115 + +L+ L +Q LD I P +V + + E D + + +PT P Sbjct: 24 AGYLVA-VVLSGKQGLD-IWLEFQPDLIVSDVRMPEMDGFEFCRYIRSQPTGQLIPFLFL 81 Query: 116 -----LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 + + + Y + F++ + + + I E+ LAA QA Sbjct: 82 SSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQLARIENIRA----EMQRLAA-QA 136 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 N+ + + LT E+ +G T+ +I+ L +S TV +++SI+ K Sbjct: 137 NVEQMKQAP--EPLPLTPAEMRVFWEAVQGWTNKQISEHLYVSPRTVQTHLSSILNKLNL 194 Query: 231 KTRSGAIAYAVRNN 244 + RS + +A N Sbjct: 195 ENRSQLVRFAYENG 208 >gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 235 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 13/180 (7%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYC 131 S++P + + + K PV T G+ + + Sbjct: 56 SNYPSEWIERYQRDDFYKQDPAAHMSHSSTTPVLWTDDLYRDAPQFREAACQHGLRHGWT 115 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFEL 186 D+ + + P +I + + + G + + H + Sbjct: 116 QSLHDLQHNESQISVARPAEKIDIVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPRM 175 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT ++GAIA A + Sbjct: 176 SERELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235 >gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus TW20] gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus T0131] Length = 200 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 FH L + L + + G + D L+ + +N Sbjct: 74 FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 124 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L+ RE+E L I++G + EIA L +S TV + IM K K+ Sbjct: 125 NQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 184 Query: 233 RSGAIAYAVRNNIV 246 + + YA++ ++ Sbjct: 185 KPELVEYALKKKLL 198 >gi|295839793|ref|ZP_06826726.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295827655|gb|EDY44664.2| two-component system response regulator [Streptomyces sp. SPB74] Length = 206 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 8/166 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 V + P ++ + + D P ++ L E + Sbjct: 42 DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPVKVLVLTTFDLDEYVVEALRAGA 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 L A + + + G +L + LL Y ++ + LT Sbjct: 102 SGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRR-LLDKYAGHLPSGEEQQPSSLQTLTE 160 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 REVE L ++ G ++ EIA L +S TV ++ ++ K + R Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRV 206 >gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 217 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ Y + + G LT RE + + I+EG ++ EIA L IS TV+ + A Sbjct: 135 SLMRTYLDRLARGERPGRG---PLTPREADVVKLIAEGHSAQEIADCLSISPRTVDRHRA 191 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I+ K + R YA+R ++ Sbjct: 192 NILEKLDLRDRVDLTRYAIRAGLI 215 >gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 209 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 V + LL ++ +R LL A + LT R++E L + Sbjct: 102 VPKSASAHTLLSAIVMVLNGERYVPPLLLDDGAAYAIEP--TRHAAGAPLTPRQIEVLRY 159 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG + IA LG+S TV +I +I R R+ A A + ++ Sbjct: 160 LAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209 >gi|182414312|ref|YP_001819378.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841526|gb|ACB75778.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+E L I G ++ EI L + +TV ++ +I+ K R+ A+ V+ Sbjct: 148 HLSTRELEVLALIGRGLSNKEIGAALNVVESTVKVHVTNILSKLGVADRTQAVLAGVKRG 207 Query: 245 IV 246 I+ Sbjct: 208 II 209 >gi|168789970|ref|ZP_02814977.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli O157:H7 str. EC869] gi|189370464|gb|EDU88880.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli O157:H7 str. EC869] Length = 240 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|120601631|ref|YP_966031.1| two component LuxR family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120561860|gb|ABM27604.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris DP4] Length = 235 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + + + F V + G + P G LA + D Sbjct: 107 GADGLLLKEADHEEVRFAVRSVLAGGFFVSPSV----------AGRLATRCRQGWALEDR 156 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G LT RE E L +++EG + EIA +L +S TV + A+ M K + + A Sbjct: 157 RTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRA 216 Query: 239 YAVRNNI 245 +A R + Sbjct: 217 FAQRQGL 223 >gi|325922114|ref|ZP_08183907.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325547411|gb|EGD18472.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 923 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 839 SGDEDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897 Query: 235 GAIAYAVRNNIV 246 A+A A++ ++ Sbjct: 898 SALAQALQRGLL 909 >gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 9/172 (5%) Query: 80 SDWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENIT---PPAGMDNRYCSLT 134 S+ P V +A+ + L R + T+ +N L Sbjct: 54 SERPDLAVLDIAMPRLTGLQAARELSRVMPELRILMLTMYDNEQYFFEALKAGASGFVLK 113 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 R + + L L+ Y + DV D +T RE E L Sbjct: 114 SVADRDLVEACRAAMRDEPFLYPG-AVTALIRNYLDRVRDGGDV---PDRAITEREEEIL 169 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG +S EIA +L IS TV + A++++K + R YA+R ++ Sbjct: 170 KLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 221 >gi|330973427|gb|EGH73493.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 87 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 22 VQLTAKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81 Query: 244 NIV 246 ++ Sbjct: 82 GVI 84 >gi|241764572|ref|ZP_04762589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365975|gb|EER60596.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 237 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 18/151 (11%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + T Y T D + + ++ + + + L+ Sbjct: 84 RVLMLTVSEDAQDLATALRNGAQGYLLKTIDGDLLAQAIRRAAAGEPVVSPELMGK--LV 141 Query: 166 AAYQANMFKSYDVHWGKDFE----------------LTGREVECLTWISEGKTSDEIAVI 209 AA+Q+ D E L+ RE E L I G ++ EIA + Sbjct: 142 AAFQSQGAPEADALEPGSAERSQPPAAFDVGDASTPLSPREEEVLREIVRGASNKEIARV 201 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L I+ TV ++ I+RK +R A YA Sbjct: 202 LDIAETTVKIHVQHILRKLGLSSRVQAAVYA 232 >gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 217 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +V + + L + F + + Sbjct: 50 DVVLMDVRMPVVDGLEALRRIAGEEALAHTRVVVLTTFELDEYVFEALRAGASGFLIKDS 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + ++ + +AA+ + + + LT RE E + Sbjct: 110 DPQEMLAAVRAAARGEALLSPSVTRRV--VAAFVSR--EPGGGRVPRLEVLTEREREVVG 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EG +++EIA L +S T +++ M K + R+ + +A R +V Sbjct: 166 LVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGLV 216 >gi|149913176|ref|ZP_01901710.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] gi|149813582|gb|EDM73408.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] Length = 242 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 77/236 (32%), Gaps = 21/236 (8%) Query: 28 TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 L + + L + +G H ++ W ++ +P V Sbjct: 8 RLDSFLEALEGASDIDDLQRLIERLRDEIGVDH-VVYHWVSSGGEQYG---CGTYPAAWV 63 Query: 88 RCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFDV 137 + + + V+Q + F PV + G+ N+ S+ Sbjct: 64 QLYVAKDYLRIDPVVQGCYQTFHPVDWKRLDWSSRAARAFLSDAVAHGIGNQGYSVPLRG 123 Query: 138 ARIRIGLMLLFPK----GRIILRDRLWE-IGLLAAYQANMFKSYDVHWGK--DFELTGRE 190 + L + + D + L+A Y + + L+ RE Sbjct: 124 PNGQFALFSVSHHCTDEAWAMFTDTHRRTLILIAHYFNHKALLLEPGRCPLTAQPLSPRE 183 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V+ +T ++ G + ++A L IS +T+ Y+ S K A++ A+ ++ Sbjct: 184 VDVITLLAMGYSRAQVAETLMISEHTLRTYVESARLKLGAINTLHAVSRAITRGLI 239 >gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH 391-98] Length = 74 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|325282015|ref|YP_004254557.1| two component transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] gi|324313824|gb|ADY34377.1| two component transcriptional regulator, LuxR family [Odoribacter splanchnicus DSM 20712] Length = 223 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D E++ RE+E L + G ++ EIA L IS+ TV+ + A+++ KT + + + YA+ Sbjct: 157 PDNEISERELEILYHVCLGLSNQEIADKLFISKRTVDKHRANLLSKTGCRNTAALVMYAI 216 Query: 242 RNNIV 246 +N ++ Sbjct: 217 KNKMI 221 >gi|291302402|ref|YP_003513680.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571622|gb|ADD44587.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + +A + K L + F + + Sbjct: 52 DVVLMDIRMPGLDGLAATAKITAEASLTSVRIIILTTFDLDEYVFEALRSGASGFLVKDT 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ ++ L+A + + V K +LT RE E + Sbjct: 112 EPVELLQAVRVVARGDALLSPGVTRR--LVAEFAQRAKEP--VSAKKLEQLTEREREVVA 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G +++EI L +S T +I+ M K + R+ + +A + +V Sbjct: 168 LAGTGLSNEEIGAKLFLSPATAKTHISRAMIKLGARDRAQLVVFAYESGLV 218 >gi|284032185|ref|YP_003382116.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811478|gb|ADB33317.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 222 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 4/144 (2%) Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 RP L F + + + + ++ ++ + Sbjct: 75 DRPRVLVLTTFDLDAYVYEALRSGASGFLLKDARPEDLLTAIRVIAAGDGMLAPTVTRRL 134 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + A QA + LT RE E L ++ G+++ EI LG++ TV ++ Sbjct: 135 -IHAFAQAAPTPGTSQTLDR---LTPREREVLALLAAGRSNAEIGDELGVATGTVKTHVN 190 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K + R A A +V Sbjct: 191 ALLSKLDARDRVQATIIAYDTGLV 214 >gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 228 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S +H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 157 SGPIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRT 216 Query: 235 GAIAYAVRNNIV 246 +A IV Sbjct: 217 ELTRWAADRRIV 228 >gi|170692899|ref|ZP_02884061.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142555|gb|EDT10721.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 240 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 16/154 (10%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L V + Y T D + ++ ++ + ++ Sbjct: 81 LMLTVSEDERDLGAALRAGARGYLLKTVDAEALADSIVRTMRDESVVSPEMTGKLVQAYR 140 Query: 168 YQAN----------------MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 AN + + L+ RE E LT+I+ G ++ EIA L Sbjct: 141 AMANAGEGDASSIADDDPATLKPEAQHGSEPEPALSIREQEILTYIARGASNKEIARALA 200 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS TV ++ I+RK +R A YA N I Sbjct: 201 ISETTVKIHVQHILRKLKLTSRVQAAVYATVNAI 234 >gi|332525737|ref|ZP_08401884.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109294|gb|EGJ10217.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 326 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 ELT RE E L W+ +GKT+ +I ILG S TV ++ + K +TR+ Sbjct: 259 LELTAREAEVLYWVVQGKTNRDIGDILGTSHRTVTKHLEHVFEKLGVETRT 309 >gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 74 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A Sbjct: 3 DKSFQPKPLLTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQA 62 Query: 237 IAYAVRNN 244 + +R Sbjct: 63 VIELLRMG 70 >gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 265 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 77/224 (34%), Gaps = 19/224 (8%) Query: 41 CTVSWTMRMYALTEYVGASHF---LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97 T + + G + ++ + + ++L ++ WP + R Sbjct: 42 TTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSYVLLDGWPEEWKRRYFSLGYLH 101 Query: 98 YYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRY-----CSLTFDVARIRIGL 144 + CP FH + + +F + Sbjct: 102 RDPAIH-LVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFG 160 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREVECLTWISEGKT 202 L+ + + L+ + +AA+ + V + L+ R+ E + W SEG T Sbjct: 161 FLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLT 220 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +DEIA L +S +T + ++ ++ + A+A A+R ++ Sbjct: 221 ADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEALRLGLI 264 >gi|297202549|ref|ZP_06919946.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148137|gb|EFH28852.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 910 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 8/173 (4%) Query: 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-PPAGMDNRYCS 132 L S+D P + E L R ++P P Sbjct: 733 LLRAESADTPDHWCEAITAVEPLGRPFDLARVRHRLAEALLSVPGGAEQPERDRATELLR 792 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L A L + R RL A A + + LTGRE + Sbjct: 793 LAHAAAEHLGARPLADAVTLLAQRARL-------ALTAVVPVLDRSDPLRSLGLTGRERD 845 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++ G+T+ +IA L IS T + ++++I+ K R A A A R + Sbjct: 846 VLRLVTLGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLGL 898 >gi|320012105|gb|ADW06955.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 216 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 7/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V+ D L+ + + V P L F + + Sbjct: 50 DVVAMDVRMPLMDGIEATRVVLR-TVTDPPKILVVTTFENDEYVYEALRAGADGFLLKRA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 A I + L+ ++ + ++ A S LT RE L Sbjct: 109 RPAEIVNAVRLVAEGETLLFPAAVRQLA------AEYGTSKAHAAMDRAALTTREAAVLR 162 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L + TV +++S++ K + R+ A+ A + V Sbjct: 163 LMARGLSNSEIAAELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213 >gi|261339343|ref|ZP_05967201.1| putative csgAB operon transcriptional regulatory protein [Enterobacter cancerogenus ATCC 35316] gi|288318141|gb|EFC57079.1| putative csgAB operon transcriptional regulatory protein [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N +T + R+ GL + + LA+Y +Y + + LT Sbjct: 105 NGVFYVTEEEGRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|255324096|ref|ZP_05365220.1| response regulator, two-component system [Corynebacterium tuberculostearicum SK141] gi|255298797|gb|EET78090.1| response regulator, two-component system [Corynebacterium tuberculostearicum SK141] Length = 212 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ +I L +S TV +++ I K ++R+ A+A A + Sbjct: 152 LTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|239981400|ref|ZP_04703924.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291453255|ref|ZP_06592645.1| two component response regulator MppU [Streptomyces albus J1074] gi|291356204|gb|EFE83106.1| two component response regulator MppU [Streptomyces albus J1074] Length = 223 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 3/169 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V +D + + + + + ++ L E + P L Sbjct: 50 DVVLADIRMPRMDGLEVVRRLAGPRAPEPRPKVVVVTTFDLDEYVYPALRNGASGFLLKR 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + G ++ + LL N ++ LT RE E Sbjct: 110 SGPALLVEAVRAAMAGDSLISPS-VTVRLLRHVTGNRTPGDPAP--REEALTEREGEIAA 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++EG T+ +IA L IS TV ++A+I RK + R G A Sbjct: 167 LVAEGGTNADIAAELFISPGTVKTHVAAIQRKFGVRNRVGIAVRAFERG 215 >gi|261380927|ref|ZP_05985500.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava NJ9703] gi|284796180|gb|EFC51527.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava NJ9703] Length = 218 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTS 203 LL + + D ++ + + ++ +LT RE+E L +++ G ++ Sbjct: 111 FLLESIRKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLAQLTPREMEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YAV++ + Sbjct: 171 KIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212 >gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 226 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A F + + +L+GRE E L ++EG ++ EI L IS TV ++ I Sbjct: 144 IARMVVRSFIADTPEKDETGQLSGREQEILALLAEGLSNKEIGSKLNISFTTVRTHLMHI 203 Query: 225 MRKTATKTRSGAIAYAVR 242 K + R+ A A +R Sbjct: 204 YEKLHVRCRTEAAAKYLR 221 >gi|145588751|ref|YP_001155348.1| two component LuxR family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047157|gb|ABP33784.1| two component transcriptional regulator, LuxR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 197 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + + +LT R+ E L IS G ++ IA L IS TV ++ I +K Sbjct: 124 LMGLNPDEAELTQLTDRQKEILAHISNGDSNKMIAYSLNISEQTVKVHLGEIFKKIKVFN 183 Query: 233 RSGAIAYAVRNN 244 R+ A+ A N Sbjct: 184 RTQAVIKAKENG 195 >gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 76/199 (38%), Gaps = 22/199 (11%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107 +Y+ + ++ + +E I+ D P ++ + + E D Y +++ + Sbjct: 37 DYLEFRGYEVITAENGREAL--EILEQDVPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 93 Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 LF + + + Y F+ + + + + W+ Sbjct: 94 IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTIRWKEHQ 147 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + D +LT E++ + +++ G + EIA L +S+ TV ++++++ Sbjct: 148 AKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203 Query: 225 MRKTATKTRSGAIAYAVRN 243 + KT R+ +A+ N Sbjct: 204 LGKTNLHNRTELARWAIEN 222 >gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 97 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 9 PVTLSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQ 68 Query: 243 NN 244 Sbjct: 69 WG 70 >gi|256380511|ref|YP_003104171.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924814|gb|ACU40325.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 3/147 (2%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 L L V + I Y + T + ++ + +G + RL Sbjct: 73 KALPEVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSQELVRAVVRVA-EGDAVFSPRL 131 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 +L A+ + D LT RE + L ++ G EIA L IS TV Sbjct: 132 AGF-VLDAFADRPGAAPISDPELDL-LTPRERDVLRLLARGYAYKEIASELFISVKTVET 189 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +++S++RKT R +A +V Sbjct: 190 HVSSVLRKTQLSNRYELSRWASDRRLV 216 >gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 509 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGIS 213 ++D W +L AN+ ++ G +LTGRE E + G EIA+ L +S Sbjct: 400 MQDASWFSRMLIEKLANVRRTNSPDAGAQLSDLTGREREVFDLLCRGLADKEIAIKLNLS 459 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 NTV N++A+I K +R+ AI +A Sbjct: 460 PNTVRNHVATIYGKLDVHSRTEAIVWARERG 490 >gi|300691151|ref|YP_003752146.1| transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] gi|299078211|emb|CBJ50858.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] Length = 252 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 24/189 (12%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +D IV+ D+P + + + +++R PV+ E P A +D + + Sbjct: 52 LMDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---EATAPTAEVDRVWLA 108 Query: 133 ------LTFDVARIR------IGLMLLFPKGRIILRDRLWEI---------GLLAAYQAN 171 L VA IG F + I L + L A+ Sbjct: 109 KFVAHDLRNAVADGVYDEGHCIGTYFSFHRLPSIDAPFLASVLRDLTPVLHRTLMRAVAD 168 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +++ L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT Sbjct: 169 SERTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228 Query: 232 TRSGAIAYA 240 R G A Sbjct: 229 NRVGVAVLA 237 >gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42] gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42] gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus amyloliquefaciens LL3] Length = 74 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LTGRE E L ++ G+++ EIA L +S TV ++ ++ K + R A+ A + Sbjct: 165 PLTGREREVLIQVARGRSNAEIAQALSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYESG 224 Query: 245 IV 246 ++ Sbjct: 225 LI 226 >gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 232 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 166 AAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A A M + ++ D ELT RE+E L ++ G ++ I L IS T ++ +I Sbjct: 151 ARSAAAMIRGVNMPVTSDDSELTSRELEVLELLAHGLSNRAIGHRLYISDTTAKFHVGNI 210 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 +RK R+ A+ A + ++ Sbjct: 211 LRKLGVSRRAEAVYEASKMGLL 232 >gi|311894385|dbj|BAJ26793.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 8/167 (4%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGL 144 VR + +++ + T + AG+ L + Sbjct: 57 VRMPGTDGIEAARRIVRECPGTKVLILTTFDLDEYAFAGLAAGASGFLLKNTRPEQLLAA 116 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISE 199 + G +L R+ LL + ++ + D +D L+ RE E L + Sbjct: 117 IRDVAAGDAVLSPRITRR-LLEDVRPHLPAAPDHRDHRDLPDPSARLSAREHEVLVQVGR 175 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G ++ EIA L ++ TV +++ I+ K + R A+ A R +V Sbjct: 176 GLSNAEIAAALHLAEATVKSHLGRILPKLGLRDRVQAVVLAHRAGLV 222 >gi|306837140|ref|ZP_07470077.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304566988|gb|EFM42616.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 223 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ A+ + LT RE+E L ++ G ++ +I L +S TV +++ Sbjct: 142 SALSPIVADRLMTR--VRTPRTSLTPRELEVLQLVAAGASNRQIGHDLMLSEATVKSHLV 199 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K ++R+ A+A A ++ Sbjct: 200 HIYDKLGVRSRTSAVAAAREQGVL 223 >gi|297191011|ref|ZP_06908409.1| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297150723|gb|EDY65386.2| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 213 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA A+ D LT RE+E L + +G ++ +I+ L +S+ TV +++ Sbjct: 130 SALAPAVAHRLM--DRMRTPAEALTKRELEVLQLVGDGLSNLQISKRLFLSQATVKSHLV 187 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+A A ++ Sbjct: 188 HIYAKLGVDSRTSAVAAATARRLI 211 >gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P + R + E LA QA Sbjct: 91 VYQALRAGASGFLLKDASARQLAEGVRVVASGEALLAPT---VTRRLINEFSKLA--QAP 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 S + ELT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + Sbjct: 146 RIASV----AQLGELTERETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLR 201 Query: 232 TRSGAIAYAVRNNIV 246 R+ A +A +V Sbjct: 202 DRTQAAVFAYEARLV 216 >gi|11465809|ref|NP_053953.1| ORF29 [Porphyra purpurea] gi|1723332|sp|P51343|YCF29_PORPU RecName: Full=Probable transcriptional regulator ycf29 gi|1276809|gb|AAC08229.1| hypothetical chloroplast ORF 29 [Porphyra purpurea] Length = 209 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 21/189 (11%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP 122 D+ +++ + FDL+ + Y +L++ ++ PV + +T Sbjct: 30 DIALNGLEAFQLANKYKFDLIISDIIMPIIDGYELLEKLRKIDKLAKIPVIFLTAKGMTK 89 Query: 123 PAGMDN-----RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 Y S FD + + +I RD L L S + Sbjct: 90 DRIKGYNMGCYGYLSKPFDPEELVSLI------KNLIYRDSLNSQNL------KKQNSDE 137 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + + LT RE L + +G T+ EIAVIL S V Y++ +++KT T+ R+ + Sbjct: 138 IPLFQLLYLTPREKSILNLVIDGLTNKEIAVILDTSIRNVEKYVSRLLQKTNTRNRTLLV 197 Query: 238 AYAVRNNIV 246 Y+++NN++ Sbjct: 198 KYSIKNNLL 206 >gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166] Length = 194 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R++L+ W +L ++ LT RE E L+ +G ++ EI Sbjct: 89 LLEGIRVLLKGGDWLPRVLTERLLGQWRRMRQLAESKTSLTLREREILSLAGKGLSNAEI 148 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A L +S +T+ ++I +++RK R+ A AY +R+++ Sbjct: 149 AEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 186 >gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 230 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L ++EG ++ EIA +S TV ++ I+ K + R A+ YA Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221 Query: 245 IV 246 +V Sbjct: 222 LV 223 >gi|319638279|ref|ZP_07993042.1| LuxR family Transcriptional regulator [Neisseria mucosa C102] gi|317400552|gb|EFV81210.1| LuxR family Transcriptional regulator [Neisseria mucosa C102] Length = 218 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTS 203 LL + + D ++ + + ++ +LT RE+E L +++ G ++ Sbjct: 111 FLLESIRKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLAQLTPREMEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YAV++ + Sbjct: 171 KIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212 >gi|284041733|ref|YP_003392073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945954|gb|ADB48698.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 225 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 8/160 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + E + R L F + + + + + ++ Sbjct: 67 RLDGIEATRRVVAGGRARVLVVTTFEHDDYVYEALRAGASGFVLKRAEPEELVQAVRIVA 126 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEI 206 ++ L A A + G LT RE E L ++ G ++ ++ Sbjct: 127 GGESLVFP------QLTRALIARSVQPGAGDGGARLLTVLTEREAEILRLVARGMSNADV 180 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L ++ +TV ++A I+ K A + R+ A+ A + V Sbjct: 181 ADELVLAVHTVKTHVARILAKLAVRDRTQAVVVAYESGFV 220 >gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 215 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 + +I L A + + +LT R+ E L + +G+++ EIA +LGIS TV Sbjct: 123 IPDILLTAHAEGFAETTDSFLGAGHEKLTPRQREVLLELGKGRSNQEIAHVLGISIATVK 182 Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242 ++ +I++ + R+ A A+R Sbjct: 183 LHVNAILQTLGVRNRTEAAIIALR 206 >gi|284029985|ref|YP_003379916.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809278|gb|ADB31117.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 7/181 (3%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 DL E + D +V D L+ + + + L + + Sbjct: 41 DLAVEHRPD-VVLMDVQMPLMDGIEATRRIAGDARLADVHVVILTNYGLDEYVFNALRAG 99 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + + + + L ++ ++ L++ + A + DV EL Sbjct: 100 ASGFLVKDTEPVDLLQALRVVIRGDALLSPTVTRR--LISEFVA---RPPDVVSTAGLEL 154 Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L ++ G ++D+IA + +S T +++ M K + R+ + A ++ + Sbjct: 155 LTPREREVLALVAHGLSNDQIAERMVLSPTTAKTHVSRAMSKLQARDRAQLVVIAYQSGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 508 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 1/152 (0%) Query: 95 KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154 + + N+ R V L G + L +D+ + L + + Sbjct: 357 PEAFRNLELRLRTKTGEVRDILISGEVLRFGDERGQLKLFYDITERKQTEEQLHRALQEV 416 Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 + D W + + + ++ + L+ RE + L ++ GK+++ IA LG++ Sbjct: 417 MSDTAWFSSQV-LERLSQVRARKLERSALVTLSKRERQVLERLARGKSNEAIAAELGLAT 475 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV NYI+++ K ++R+ A+ +A ++ Sbjct: 476 QTVRNYISAVYDKLGVRSRAEAVVWARERGVI 507 >gi|283784837|ref|YP_003364702.1| CsgAB operon transcriptional regulator [Citrobacter rodentium ICC168] gi|282948291|emb|CBG87871.1| probable CsgAB operon transcriptional regulator [Citrobacter rodentium ICC168] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N +T D R+ GL + + LA+Y +Y + + LT Sbjct: 105 NGVFYVTEDEERVVYGLQGILRGECYFSQK-------LASYLITHSGNYRYNGTESALLT 157 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|126348327|emb|CAJ90048.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 221 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ +A + + L+ + F + + Sbjct: 49 DVVLMDIRMPLLDGLAATRRITGDAGLRDVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + A + G+ LT RE E + Sbjct: 109 EPEELLRAVRAVVAGDALLSPSVTRR--LIAEFAARSKEP--AAAGELARLTEREREVMA 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|46581079|ref|YP_011887.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450500|gb|AAS97147.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris str. Hildenborough] Length = 227 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + + + F V + G + P G LA + D Sbjct: 99 GADGLLLKEADHEEVRFAVRSVLAGGFFVSPSV----------AGRLATRCRQGWALEDR 148 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G LT RE E L +++EG + EIA +L +S TV + A+ M K + + A Sbjct: 149 RTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRA 208 Query: 239 YAVRNNI 245 +A R + Sbjct: 209 FAQRQGL 215 >gi|291446355|ref|ZP_06585745.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349302|gb|EFE76206.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 16/173 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTF 135 P L+ + + E D VL++ L P F Sbjct: 56 PDVLLLDIRMPEVDG-LTVLRQVGTLTAPPAVAMLTTFDAARHIDDALRSGAVGLLMKNT 114 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 ++ + +L GRI+ + + + G LAA + LT RE + Sbjct: 115 APEQLVHAVRVLAAGGRILAPEAVGPVIEGYLAAG------RDSGAADRTGALTDREGQV 168 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G ++ EIA L +S TV ++++S++ K R A A R ++ Sbjct: 169 LALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 221 >gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L+ Y + + D +T RE E L ++EG +S EIA +L IS TV+ + A Sbjct: 139 ALVRNYLDRVRHGEEP---PDQVVTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRA 195 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K + R YA+R ++ Sbjct: 196 NLLHKLGLRDRLELTRYAIRAGLI 219 >gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 222 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ L+ + + Sbjct: 99 RAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRR--LITEFSKIAEAPRPPAMARI 156 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ EIA L ++ +T+ +++ I+ K + R+ A +A Sbjct: 157 GDLTERETEVLVLIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 216 Query: 244 NIV 246 +V Sbjct: 217 RLV 219 >gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 209 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 12/174 (6%) Query: 77 IVSSDWPFDLVRCMALSE---KDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCS 132 +V++ P +V + + + P + + P+++ P R Sbjct: 43 VVAATSPDLVVTDLRMPGGGVSLITHLAASAPGVAVLVLTTYDTPDDVLPALDAGARGYV 102 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L LF R + + +A + ++ L+GREV+ Sbjct: 103 LKDAPRE------ELFRAVRAVADGETFLAPSVAGLLVSRVRARQQPA--PAALSGREVD 154 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +++G+T+ + A +LG++ TV ++ + K R+ A+A R+ ++ Sbjct: 155 VLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGLL 208 >gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae] Length = 230 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H K+ L+ RE + L W+ GKT E+AVIL I+ TV + ++M+K + A+ Sbjct: 161 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFLMGNVMKKLGVNNATHAVK 220 Query: 239 YAVRNNIV 246 ++ Sbjct: 221 LGTELRLL 228 >gi|148656116|ref|YP_001276321.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148568226|gb|ABQ90371.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 220 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + F+ V + +LT RE + LT ++ G + IA L +S TV N ++ I +K Sbjct: 138 DEFRRLSVDQDAE-QLTERERDILTLLAAGYDNRTIAQRLFLSEKTVGNRLSEIFQKLGV 196 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A AV+ ++ Sbjct: 197 SNRTQAALVAVQRGLI 212 >gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf0-1] Length = 239 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 27/230 (11%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLV------ 87 + V+ + G F+L E ++ I V DW D + Sbjct: 16 IEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWVEGDWFGDGIAVDAQT 75 Query: 88 ---------RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 + E + V ++ EL+ V P+G + Sbjct: 76 YVQRCPVTRHLLDARESFFWSKVQEQSGELYRLV--------RVPSGPGVHGLQIPVFGP 127 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTW 196 + G M L + +G+LA+ + + +L+ RE E L W Sbjct: 128 QGLEGAMSLGGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTREREVLAW 187 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G+ +IA LG+S TV N++ S R T + AI A+R + Sbjct: 188 VAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEI 237 >gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 217 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 FH L + L V + G M + D L+ + Sbjct: 91 FHVLRNGAKGYILKNAPDEQLILAVRTVYQGEMYV---------DMKLTTSLVNEFVNQP 141 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 L+ RE+E L I++G + EIA L +S TV + IM K K+ Sbjct: 142 QYDTGTTNDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKS 201 Query: 233 RSGAIAYAVRNNIV 246 + + YA++ ++ Sbjct: 202 KPELVEYALKKKLL 215 >gi|218549230|ref|YP_002383021.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii ATCC 35469] gi|218356771|emb|CAQ89399.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia fergusonii ATCC 35469] gi|324113838|gb|EGC07812.1| luxR family protein regulatory protein [Escherichia fergusonii B253] gi|325497648|gb|EGC95507.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii ECD227] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K + K R+ A+++A Sbjct: 195 FKKISVKNRTQAVSWA 210 >gi|31790492|emb|CAD56670.1| putative regulatory protein [Citrobacter sp. Fec2] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 46/87 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|320095650|ref|ZP_08027309.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977423|gb|EFW09107.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 9/156 (5%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 +E ++ L V + + ++ Y + + + + + + Sbjct: 68 AEVASACQDVEGLRFLALSVSDSAEDVVSVIRAGARGYVTKSISPSDLVEAINRVAGGDA 127 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVIL 210 LA + + F + +V + L+ RE E + I+ G T E+A L Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSTTDSELDLLSAREQEVMRLIARGYTYKEVAHDL 180 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++++++RK R +A++ +IV Sbjct: 181 FISIKTVETHVSAVLRKLQLSNRHELTRWAMQRHIV 216 >gi|313837084|gb|EFS74798.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314927887|gb|EFS91718.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971857|gb|EFT15955.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907346|gb|EGG27112.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 210 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G LA A + LT RE++ L + G ++ +IA L +S TV +++ Sbjct: 128 GALAPAVATRLMAR--MRSPQTSLTARELDVLEASAGGLSNAQIAQSLVVSEATVKTHLS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +RS A+A A ++ Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGLI 209 >gi|300855110|ref|YP_003780094.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528] gi|300435225|gb|ADK14992.1| predicted regulatory protein [Clostridium ljungdahlii DSM 13528] Length = 885 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L+ + S+K+K L +F + + + + + +R+ L+ Sbjct: 721 LLNKILASDKEKDNKNLIIRAYIFRSEILSQKDQYENATKDLRQALIIGYKSGFVRLFLI 780 Query: 146 LLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 K R IL + + + Y + Y ++ RE E L I + Sbjct: 781 K-QTKARKILIKTIKSMKFNKDYYEMGDYLNKILSLYSTKEDSQI-ISKREREVLMLIEK 838 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G + EIA L I+ +T ++I +I K + + R A+A A I+ Sbjct: 839 GAKNSEIAKRLFITESTAKSHILNIFSKLSVRNRIEAVAKAKEIGII 885 >gi|289645094|ref|ZP_06477121.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505091|gb|EFD26163.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 421 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE E L ++ GKT+ +IA L ++ TV +++ I+RK R+ A+A Sbjct: 349 LTPRECEVLRSLASGKTNAQIASSLFVTEGTVKSHVKHILRKLGAANRTDAVAR 402 >gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] Length = 212 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + G +S E+A L IS TV ++AS+ K ++ A+ A+++ + Sbjct: 145 LSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALKHGL 204 >gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] Length = 866 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 PE + + + F+ L +LR+R+ E G A+Y Sbjct: 744 PEGFIRIFMDEGQALTPLFERWLSEASLDEEMAAYANLLRERISEGGWTASYAR------ 797 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + +LTGRE E L I EG +++EI L +S TV Y +I K K R A Sbjct: 798 -MKDNLTVKLTGREREVLRKIGEGLSNEEIGGQLFLSTGTVKKYAYNIYEKLQVKNRVQA 856 Query: 237 IAYAVRNNIV 246 I+ A ++ Sbjct: 857 ISRAKEMGLL 866 >gi|83310354|ref|YP_420618.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945195|dbj|BAE50059.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 19/190 (10%) Query: 57 GASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHT 115 G F + E+ ++++ + PFD+ + + D + T + P Sbjct: 30 GDDRFTVAAVTSDGERFIEAVEKT--PFDVGIIGWEMPYLDGRGVLQTLRTRVDAPRLIV 87 Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + P DV R + L + ++L + + A +F Sbjct: 88 YTGSPNP-------------DVPRQAMTLGAAGFCSKREPPEQLLDTIIAVAAGRMVFPF 134 Query: 176 YDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 DV LT RE E L ++ G T+ ++A L IS NTV ++ ++ K Sbjct: 135 IDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGN 194 Query: 233 RSGAIAYAVR 242 R+ A+A+ ++ Sbjct: 195 RAQAVAFYLK 204 >gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] Length = 202 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + +S D LT RE + L + +GK++ EIA L I TV ++ ++ RK Sbjct: 127 DFLESGDTEAEGKVHLTPRETDVLVGVLDGKSNKEIARDLDIQEVTVKLHLKTLSRKLGA 186 Query: 231 KTRSGAIAYAVRNNI 245 K R+ A A + Sbjct: 187 KNRTQAAMIARDMGL 201 >gi|327403986|ref|YP_004344824.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319494|gb|AEA43986.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 224 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + I E KT+ EIA L I++ TV + ++ KT K +G I YA++NNI Sbjct: 156 LSERELEIIQLICEQKTAKEIADKLFINQRTVEGHKNNMFAKTGAKNIAGLIIYAIQNNI 215 Query: 246 V 246 + Sbjct: 216 I 216 >gi|297161064|gb|ADI10776.1| two-component system regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L +++G+++ IA L IS TV ++ M K +R+ A+A + Sbjct: 157 LTMRETEVLRHVAKGRSNSAIARELKISEATVKTHLNRAMTKLGITSRAQAVALGYECGL 216 Query: 246 V 246 V Sbjct: 217 V 217 >gi|293605268|ref|ZP_06687654.1| nitrate/nitrite response regulator protein NarL [Achromobacter piechaudii ATCC 43553] gi|292816324|gb|EFF75419.1| nitrate/nitrite response regulator protein NarL [Achromobacter piechaudii ATCC 43553] Length = 221 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 8/132 (6%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 L + + LT + R G ++ L D+ LAA + Sbjct: 93 QALRDGARGYLVKNIDAEVLTSAIRRAAAGESVIAESMTAKLVDQFRGQASLAAQGKS-- 150 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE + + ++ G ++ IA L +S +TV ++ ++++K +R Sbjct: 151 ------PAERHRLTARETQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSR 204 Query: 234 SGAIAYAVRNNI 245 YAV + + Sbjct: 205 VQVAVYAVEHGL 216 >gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] Length = 240 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%) Query: 59 SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116 SH +L+ D + + ++ D FD+V +P L + Sbjct: 4 SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAAKFQPDVILLDLNMKGM 63 Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170 T A G D R LT AR + M+ +L+D EI L QA Sbjct: 64 SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 123 Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 S ELT RE++ L ++ G ++ ++A L IS TV + Sbjct: 124 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 183 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 I +++RK ++R A + N Sbjct: 184 IRNLLRKLNVRSRVAATIMYLENK 207 >gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus WK1] Length = 89 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +H + LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ Sbjct: 19 IHLNQKPLLTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 78 Query: 238 AYAVRNN 244 +R Sbjct: 79 VELLRMG 85 >gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122] gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122] gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp. aureus CGS00] Length = 217 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 FH L + L + + G + D L+ + +N Sbjct: 91 FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 141 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L+ RE+E L I++G + EIA L +S TV + IM K K+ Sbjct: 142 NQDTANTSDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 201 Query: 233 RSGAIAYAVRNNIV 246 + + YA++ ++ Sbjct: 202 KPELVEYALKKKLL 215 >gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 156 RDRLWEIGLLA-AYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGIS 213 R L + L++ A Q F LT RE ECL +EG T+ +IA L S Sbjct: 159 RQTLGDFSLISHALQEAAFPLLGKEARACPVRLTKRERECLRLAAEGLTAADIARQLNRS 218 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ ++ S M K + R A+ AV ++ Sbjct: 219 LATITLHLTSAMHKLGARNRVQAVVRAVHYRLL 251 >gi|319441256|ref|ZP_07990412.1| two-component system transcriptional regulatory protein [Corynebacterium variabile DSM 44702] Length = 205 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D L+ RE E L ++ G ++ E+A L IS TV ++ I RK R+ A+ A Sbjct: 141 PDLALSRRETEILRALATGASNREVASSLFISPATVKTHLIHIYRKLGVDNRTAAVTEAQ 200 Query: 242 RNNIV 246 ++ Sbjct: 201 VRKLI 205 >gi|302549097|ref|ZP_07301439.1| LuxR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302466715|gb|EFL29808.1| LuxR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 981 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G+++ I L IS T + ++++I+ K +R A+A A R + Sbjct: 913 LTAREQEVLRLLALGRSNRRIGEELFISGKTASVHVSNILAKLGASSRGEAVAVAYREGL 972 Query: 246 V 246 + Sbjct: 973 I 973 >gi|297155349|gb|ADI05061.1| two-component system regulator [Streptomyces bingchenggensis BCW-1] Length = 237 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L + + + LT RE E L +++G + +A IL IS TV ++ Sbjct: 137 MSRLVDICTHRTTPVEYDGSRLATLTMREAEVLKLVAKGYGNSTVAKILHISEATVKTHL 196 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 M K +R+ A+A + +V Sbjct: 197 NRAMGKLEISSRAQAVALSYEFGLV 221 >gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 6/84 (7%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L Y N +++ RE+E L W + GKT+ ++A IL +S++TVN +I Sbjct: 158 AVLGEYHLNAL------CPPQPKMSKRELEVLKWSAAGKTAADVACILSLSQSTVNFHIR 211 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 S++ KT+ ++GA+A A + Sbjct: 212 SVITKTSAANKAGAVAIAALRGWI 235 >gi|78356024|ref|YP_387473.1| two component LuxR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218429|gb|ABB37778.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 223 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 11/216 (5%) Query: 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95 +I + + +L + V L+V + Q + + P ++ +++ Sbjct: 7 LIIAEDHTLLREGLKSLLQSV---PHLIVTGEASDGQMAVDLCDRNQPELVLMDISMPRM 63 Query: 96 DK--YYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 D ++++ + H E + L I + Sbjct: 64 DGVQATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAGADGYVLKDASNDEFILAVESVLG 123 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G+I L + + + +S W LT RE E ++EG + EIA +L Sbjct: 124 GKIYLSPGVSDAVVKGYLNDARGQSVSSSWET---LTPREQEIFQLVAEGYKNREIAEML 180 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV + +++M+K + + A A+ I+ Sbjct: 181 VVSVKTVEKHRSNLMQKLGVHSAAELRALALERGII 216 >gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614] gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614] Length = 215 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 6/171 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D L+ +A + K + + F I + + Sbjct: 51 EIVLMDVRMPLLDGIAATRKL--HEAQSSARIIVLTTFGLDDYVIGALRAGAHGFVLKDA 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 R+ + + +I + L + + +LT RE + L Sbjct: 109 PPERLLEAIHEVGAGRGVIDPA----VTLPVIRALGTRELRPEVAARLADLTSRERDVLV 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G ++ EIA L + TV ++A ++ K + R A+ A +V Sbjct: 165 LLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRDRLQAVVSAFNAGVV 215 >gi|78185167|ref|YP_377602.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169461|gb|ABB26558.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 227 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 10/154 (6%) Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI-----GLMLLFPKGRIIL 155 + ++ + + +NI+P + + DV R I G++ + G+ Sbjct: 73 ITEQLEQGYGINLALKVKNISPATSVLVFLHRESQDVVREAIEANVDGIIFVHSIGQSAD 132 Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVIL 210 D L I +A + K G L+ RE E L + +G ++ E+A +L Sbjct: 133 GDFLKSIRAIANGSSYYPKEVRTMAGYVKSIALAGLSDRESEVLEALCQGMSNKEMAEVL 192 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +S T+ +++++++ K K R+ A+ A+R Sbjct: 193 FVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226 >gi|22299408|ref|NP_682655.1| transcriptional regulator [Thermosynechococcus elongatus BP-1] gi|22295591|dbj|BAC09417.1| transcriptional regulator [Thermosynechococcus elongatus BP-1] Length = 93 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 38/59 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE++ L ++ G T+ +IA L IS+ TV+N+I++I+ KT ++ R + +A+ Sbjct: 14 LSERELQVLELVAAGLTNQDIAAKLDISKRTVDNHISNILMKTKSENRVALVRWALAWG 72 >gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E LT I EG T+ EI L +S TV N+I+ ++ K + R A A Sbjct: 151 LSTREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIA 205 >gi|239945267|ref|ZP_04697204.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239991728|ref|ZP_04712392.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291448730|ref|ZP_06588120.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291351677|gb|EFE78581.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 250 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 12/236 (5%) Query: 11 VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70 VL +D+ L R+D + + + V + VR Sbjct: 7 VLIADDQTLVRTGFRLILRADGIDVVAEAADGAEAVEGVRRTRPDV---VLMDVRMPELD 63 Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 + + + P S + RP + F + + + Sbjct: 64 GLEATRRILAAPPAL------PSTRSGEAACADRPRVIILTTFDLDRYVYAALSAGASGF 117 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 ++ + + ++ + A + + LT RE Sbjct: 118 LLKDVTPEQLTAAVRTVRTGDALLAPAITRRLVRRFAQHGSGTAALHRDLA---SLTPRE 174 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E ++ G ++ E+A L ++ TV ++A I+ K + R A+ A +V Sbjct: 175 LEVFGLLARGLSNAELAARLHLAEATVKTHVARILAKLGLRDRVQAVIVAYETGLV 230 >gi|114798675|ref|YP_760164.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114738849|gb|ABI76974.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 137 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + EL+ ++V CL W+ GKT EIA I+ S NTV +I + ++ R+ A+ Sbjct: 69 AEGARPAELSPQQVTCLRWVKAGKTDQEIAEIILCSVNTVRYHIKTALKDLGASNRTHAV 128 Query: 238 AYAVRNNIV 246 A+ + ++ Sbjct: 129 VLAIEHRLI 137 >gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis] gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis] Length = 74 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 3/140 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 + H E++ P L + + + +G L + ++ Sbjct: 76 AQSVVVTIHDDDEHLFPALQAGAFGYILKEQPRELIVEQLQRISQGEPPLSPSIARR-MM 134 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + + +LT RE E L +++G T EI V LG+SR+T+ +Y+ I Sbjct: 135 AHFTQKAKPQTSLL--PHVQLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYVKQIY 192 Query: 226 RKTATKTRSGAIAYAVRNNI 245 RK +R+ A A R + Sbjct: 193 RKLNVSSRAEAALEAQRLGL 212 >gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 213 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE E L I+ G ++ IA LGIS +TV N+I+S++ K + R+ A A Sbjct: 146 EPQEPLTPREHEVLALIARGDSNKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEAALRA 205 Query: 241 VRNN 244 Sbjct: 206 RTLG 209 >gi|302038025|ref|YP_003798347.1| putative LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300606089|emb|CBK42422.1| putative Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 235 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + ISEG ++ +IA L IS TV +++ SI K R + A + + Sbjct: 169 LTEREREVVRLISEGLSNKDIADRLCISSITVRHHLTSIFDKLGVSNRQKLLIRAHQQGL 228 Query: 246 V 246 V Sbjct: 229 V 229 >gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 244 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 12/181 (6%) Query: 75 DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 + VSSDWP DL + + L +F + P+ + + Sbjct: 40 EYSVSSDWPRDLAGPHLIVLDTGKGDQLD-LQAMFKGYKASYPQARLVILAESFEFEGVM 98 Query: 135 FDVARIRIGLML-------LFPKGRIILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFE 185 A G ++ L R+I LA + + ++ G D Sbjct: 99 RAFAAGADGYIVKEIGCQSLMESLRLIALGEKVMPSALAQFLPETMERRTRPARPGPDLA 158 Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E + G+ + IA LGI+ TV ++ +I+RK K R+ A+A+A+ Sbjct: 159 GTLSEREIETFRRMCRGEPNKVIAQNLGITEATVKVHVKAILRKLHLKNRTQAVAWALGE 218 Query: 244 N 244 Sbjct: 219 G 219 >gi|29830997|ref|NP_825631.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608111|dbj|BAC72166.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G L+ P L+A Y Sbjct: 90 VYEALHAGASGFLLKDVRRDDLVHAVRVVAAGESLVAPS---------VARRLIADYTRR 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ++ V D LT RE E L ++ G ++ EIA + +S +TV ++ +++ K A + Sbjct: 141 GRRTAPVSGRLDV-LTARERETLLHLAHGLSNAEIAAAMVVSEHTVKTHVGNVLSKLALR 199 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 200 DRVQAVICAYETGLV 214 >gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 245 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 16/192 (8%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118 + R + +Q +D +V + PF + +S + K + E H + Sbjct: 57 IYRANNYQ--HIDPVVITALNKITPFPWDEDLLVSTQLKMSKIFNLSRE------HNITN 108 Query: 119 NIT-PPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGL--LAAYQANMFK 174 T +N L+ + + + + + L+ L I ++ Y+ + Sbjct: 109 GYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIENNKDKLQMTLMNIHAETISLYREMIRN 168 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D + RE E L W S GKT EIA+IL I TV +I ++++K Sbjct: 169 KEDERSNDKDIFSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKKLGVLNAK 228 Query: 235 GAIAYAVRNNIV 246 AI + ++ Sbjct: 229 HAIRLGIELQLI 240 >gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60] Length = 239 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 71/184 (38%), Gaps = 19/184 (10%) Query: 72 QKLDSIVSSDW----PFDLVRCMALSEKDKYYNV--LQRPTEL---FCPVFHTLPENITP 122 Q +D +V S PF + ++ K + L + ++ + V H + Sbjct: 61 QHIDPVVISALRRVSPFLWDEKITVNSKLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAM 120 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + M + + +R + ++L+ R + R + A K Sbjct: 121 LSLMVDDRGLAEIERSRGVLQMLLIDAHERFMNGQRH-----ITAQHYCSKKEP-----I 170 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W S GKT EIA+ILGI TV +I ++++K AI V Sbjct: 171 ENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVE 230 Query: 243 NNIV 246 ++ Sbjct: 231 LQLI 234 >gi|301029752|ref|ZP_07192806.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|299877440|gb|EFI85651.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|332342581|gb|AEE55915.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 190 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 109 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 169 FKKIAVKNRTQAVSWA 184 >gi|294085444|ref|YP_003552204.1| LuxR family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665019|gb|ADE40120.1| two component transcriptional regulator, LuxR family [Candidatus Puniceispirillum marinum IMCC1322] Length = 207 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 2/104 (1%) Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 L ++ RL G + A + KD L+ RE E L + G Sbjct: 103 LPYSMTSDALLSALRLMASGEIFIPVSVAEHVQIAKPSTAKDTFLSKREREVLDGLLSGH 162 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ +IA +G+S T+ ++ S+ K + R+ A A+ I Sbjct: 163 SNKQIAERIGLSEVTIKYHLKSLRSKLGARNRTHAALRAIELGI 206 >gi|284989608|ref|YP_003408162.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062853|gb|ADB73791.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 212 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 20/177 (11%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNR 129 +V+S P ++ + + D ++R V + T + + A Sbjct: 43 MVASLDPDVVLMDLRMPRMDG-VAAIERLAGTHPGVRVLVLTTYDTDADIVRAVAAGATG 101 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + ++ + ++ +AA + ++ T R Sbjct: 102 YLLKDAPLPQLADAVRAAARGETVLAPP-------VAARLVSRLRAPAAEAP-----TAR 149 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+E L ++ G T+ EI L I TV ++ + K R+ A+ AV ++ Sbjct: 150 ELEVLAGVARGLTNAEIGRELFIGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL 206 >gi|302540281|ref|ZP_07292623.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457899|gb|EFL20992.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L I EG T+ +I L +S TV N+I+ ++ K + R A A Sbjct: 168 LSPREREILALIGEGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAVLA 222 >gi|152989443|ref|YP_001346571.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964601|gb|ABR86626.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 906 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 11/170 (6%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT-------FDVARI 140 R +++ R P L + +L V Sbjct: 736 RSQEAAQRLARLARSTRENGALLPARLALGQLAALYLEQGRERDALATLQQAMEGAVGGA 795 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDFELTGREVECLTW 196 + L L + LR++L + + L+GRE+ L Sbjct: 796 LLPLHELLVQQPEWLREQLQRFPACPGARRLRALLPEPPAEPAAVAGEVLSGRELAVLEL 855 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EI+ L IS +TV ++ I K + R+ A+A A ++ Sbjct: 856 IAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARAKHMGLL 905 >gi|91794405|ref|YP_564056.1| response regulator receiver [Shewanella denitrificans OS217] gi|91716407|gb|ABE56333.1| two component transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 219 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 29/246 (11%) Query: 3 FEIQQVNIVLNREDEQRTSFVSHLPTRS--DLLARMIPLDCTVSWTMRMYALTEYVGASH 60 EIQQ N + L + LLA ++ T ALT Sbjct: 1 MEIQQTNTAKPSKIRVGLVDDQQLVRQGIASLLALSDKIEVTWQAENGQQALT------- 53 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120 LL + I+ SD ++ ++L + N + L F + Sbjct: 54 -LLASTAI-------DILLSDIRMPVMDGISLLSHIRADN--NQLPTLMLTTFDDSELFL 103 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 T N + + ++ + ++ G +I L ++ A A Sbjct: 104 TSLHAGANGFLLKDVSLDKLLNAIEVIAQGGVLIEPVVLNQLSQQAPINAPEVNP----- 158 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE L +++ G ++ EIA + ++ TV N++++I+ K + R+ A+ Sbjct: 159 -----LSERETSILKFMANGCSNKEIATGVFLAEGTVKNHVSNILSKLGCRDRTRAVLKG 213 Query: 241 VRNNIV 246 + I+ Sbjct: 214 LELGII 219 >gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 237 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E LT S+G +S EIA L IS TVN + +I K ++ AI A R Sbjct: 175 FALTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRK 234 Query: 244 NIV 246 I+ Sbjct: 235 GIL 237 >gi|271966618|ref|YP_003340814.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509793|gb|ACZ88071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D R L V + G LL P L DR A+ Sbjct: 91 VFAALRAGASAFLLKDVRPAELVEAVRVVARGDALLAPSVTRRLLDRF----------AS 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + L+ REVE L ++ ++ EIA L ++ TV ++++++RK + Sbjct: 141 VLPDPAGPPADLGRLSEREVEVLRLVALALSNAEIAERLVLTEATVKTHVSAVLRKLGLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 201 DRVQAVVLAYDVGLV 215 >gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 207 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++LT +E E LT ++EG ++ EIA ++ +S TV NY++++M K + R+ A + + Sbjct: 146 YQLTKKEYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVRDRTQAAIFYYKQ 205 >gi|331646293|ref|ZP_08347396.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M605] gi|320196482|gb|EFW71105.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli WV_060327] gi|330910850|gb|EGH39360.1| transcriptional regulator CsgD for 2nd curli operon [Escherichia coli AA86] gi|331045045|gb|EGI17172.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M605] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G +++EIA L IS Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 12/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 F +L + L G L+P L+ Y A Sbjct: 104 FFESLKAGASGYVLKSVADRDLLEACRAAMRGEPFLYPGAV---------TALIRDYLAR 154 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + V D LT RE E + I+EG +S EIA L IS TV+ + A+++ K + Sbjct: 155 ARRGERV---PDSVLTPREEEIVKLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMR 211 Query: 232 TRSGAIAYAVRNNIV 246 R YA+R +V Sbjct: 212 DRLELTRYAIRAGLV 226 >gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 312 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + F LT RE E L W+S GKT+ +I ILGI+ TVN ++ + RK +TR Sbjct: 244 ALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298 >gi|300859427|ref|YP_003784410.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686881|gb|ADK29803.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302207104|gb|ADL11446.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis C231] gi|302331665|gb|ADL21859.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis 1002] gi|308277359|gb|ADO27258.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis I19] Length = 212 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ +I +L +S TV +++ I K ++R+ A+A A + Sbjct: 152 LTPRELEVLKLVAGGSSNRDIGRVLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGV 211 Query: 246 V 246 + Sbjct: 212 L 212 >gi|296536416|ref|ZP_06898516.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] gi|296263266|gb|EFH09791.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] Length = 308 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 10/128 (7%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + P+ LP + G R + R + G+I + L + Sbjct: 176 PEDEDSPLLLRLPGWLPLAEGEAPRLPPVALSDGR----QVEFHHVGQIGPEELLLRVTA 231 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA + LT RE E L WI GK + +IA IL +S TVN ++ I Sbjct: 232 LA------PGREESVLRDRLGLTAREAEVLLWIGRGKANRDIAEILVMSPRTVNKHLEGI 285 Query: 225 MRKTATKT 232 K + Sbjct: 286 FAKLGVEN 293 >gi|113867436|ref|YP_725925.1| transcriptional regulator [Ralstonia eutropha H16] gi|113526212|emb|CAJ92557.1| transcriptional regulator, LuxR-family containing alpha/beta hydrolase domain [Ralstonia eutropha H16] Length = 378 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 38/80 (47%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L +A + + V LT RE + + I++G+ + +IA L + TV N+I SI Sbjct: 293 LDEVRAFLPATEPVRDPAFSALTRRERDIVELIAQGRDNAQIAAHLDLCEKTVRNHITSI 352 Query: 225 MRKTATKTRSGAIAYAVRNN 244 K + R+ AI A + Sbjct: 353 FAKLEVENRAQAIVLARKAG 372 >gi|119714214|ref|YP_919356.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119526123|gb|ABL79493.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 567 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E L + EG ++ EIA L IS T +++ +I+ K ++R+ A AYA+ + Sbjct: 497 LSRREQEVLGLVVEGLSNAEIAERLFISVKTAGHHVGNILTKLGVRSRTEATAYALLH 554 >gi|46201969|ref|ZP_00054016.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 19/190 (10%) Query: 57 GASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHT 115 G F + E+ ++++ + PFD+ V + D + + + P Sbjct: 30 GDERFTVAAVTSDGERFIEAVEKT--PFDVGVIGWEMPYLDGRGVLQTLRSRVDAPRLIV 87 Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + P DV R + L + ++L + + A +F Sbjct: 88 YTGSPNP-------------DVPRQAMTLGAAGFCSKREPPEQLLDTIIAVAAGRMVFPF 134 Query: 176 YDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 DV LT RE E L ++ G T+ ++A L IS NTV ++ ++ K Sbjct: 135 IDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGN 194 Query: 233 RSGAIAYAVR 242 R+ A+A+ ++ Sbjct: 195 RAQAVAFYLK 204 >gi|317122922|ref|YP_004102925.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592902|gb|ADU52198.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 259 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D LT R+ E L ++EG ++ EIA L +S TV N ++ I + + R Sbjct: 172 PPRDPRLDGPEPLTARQREVLELLAEGLSNREIAARLHLSEGTVKNVVSEIYARLQVRDR 231 Query: 234 SGAIAYA 240 A+ A Sbjct: 232 VQAVLRA 238 >gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 13/135 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + D R +L V + G L P G+ A Sbjct: 92 VVAAIRAGASGYLTKDVRPAALAQAVCDVASGTSALTP-------------GVAATILDL 138 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT REVE ++ G+++ EI L +S NTV +++ ++++K + Sbjct: 139 VRQVPIRRTAALDGLTPREVEIFGLLARGRSNSEICAELVLSENTVKSHVRAVLQKLDLR 198 Query: 232 TRSGAIAYAVRNNIV 246 R A+ +A N +V Sbjct: 199 DRVHAVIHAYENGLV 213 >gi|21222522|ref|NP_628301.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256786408|ref|ZP_05524839.1| two-component system response regulator [Streptomyces lividans TK24] gi|8052435|emb|CAB92376.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + + R L F + + + + G+ + Sbjct: 62 GIEATRRIVAGGGRSRVLILTTFDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATG 121 Query: 151 GRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ LL AY ++ + + LT RE E L + +G T+ Sbjct: 122 DAVVAPSLTRR--LLDAYVHHLPAAGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNT 179 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L ++ +TV ++ I+ KT ++ R A+ A +V Sbjct: 180 EIAERLHLAESTVKTHVGRILAKTGSRDRVQAVILAYETKLV 221 >gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] Length = 232 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222 Query: 238 AYAVRNNIV 246 +A IV Sbjct: 223 RWAADRRIV 231 >gi|217978486|ref|YP_002362633.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503862|gb|ACK51271.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 209 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT R++ L +S GK++ EIA L IS TV +I +I RK TR+ AI Sbjct: 145 LTPRQLAVLGLLSAGKSNKEIARALSISDLTVKVHITTIFRKLGVATRTQAIV 197 >gi|170682157|ref|YP_001744145.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SMS-3-5] gi|191172365|ref|ZP_03033906.1| transcriptional regulator CsgD [Escherichia coli F11] gi|312968892|ref|ZP_07783099.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 2362-75] gi|170519875|gb|ACB18053.1| transcriptional regulator CsgD [Escherichia coli SMS-3-5] gi|190907249|gb|EDV66847.1| transcriptional regulator CsgD [Escherichia coli F11] gi|312286294|gb|EFR14207.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 2362-75] gi|320178529|gb|EFW53494.1| Transcriptional regulator CsgD for 2nd curli operon [Shigella boydii ATCC 9905] gi|323174844|gb|EFZ60459.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli LT-68] gi|323185839|gb|EFZ71200.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1357] gi|333005785|gb|EGK25303.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-218] Length = 190 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 109 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 169 FKKIAVKNRTQAVSWA 184 >gi|77459476|ref|YP_348983.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383479|gb|ABA74992.1| putative luxR family response regulator [Pseudomonas fluorescens Pf0-1] Length = 201 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT R+ E L I++GKT+ EIA L IS TV +++S++R +R+ A Sbjct: 143 LTPRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLRVLNVPSRAAAAVK 196 >gi|94985596|ref|YP_604960.1| LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555877|gb|ABF45791.1| transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 197 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 36/69 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + D LT RE + L ++ G ++ A LG+S +TV ++ ++ K ++R+ A+ Sbjct: 127 LPLSGDVTLTPRERDVLALLAAGLSNKRAARELGVSESTVKFHVQAVYSKLGVQSRAAAV 186 Query: 238 AYAVRNNIV 246 ++ ++ Sbjct: 187 TRGIQLGLL 195 >gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 904 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 11/134 (8%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 A + L D RIG +L + +LA + + ++ Sbjct: 770 AACAEGFARLLLDEGGNRIGPLLAQFSRTLESSGGAQRDPVLAEFVMRLVQACGPLEESP 829 Query: 184 FE-----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 LT +E+ L ++EG ++ IA L +S +TV ++ +I K + Sbjct: 830 EPIAGDRPQLLDPLTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKICAHS 889 Query: 233 RSGAIAYAVRNNIV 246 R+ A+A A R ++ Sbjct: 890 RTQAVAIARRLGVI 903 >gi|291297909|ref|YP_003509187.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567129|gb|ADD40094.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREV 191 +AR + ++ R + + L+ A A ++ K+ + L+ RE Sbjct: 19 IARSAVHIVREARASRRLEPLSIDGRMLVNAVVALGIDLDVPKTVSIPASLRRGLSERET 78 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L I+ GK++ EI L I+ +TV + + RK + R+ A+A A R I+ Sbjct: 79 QVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRIGIL 133 >gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus N315] gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus Mu3] gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719] gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300] gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948] gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754] gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315] gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719] gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300] gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948] gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754] gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 217 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 FH L + L + + G + D L+ + +N Sbjct: 91 FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 141 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L+ RE+E L I++G + EIA L +S TV + IM K K+ Sbjct: 142 NQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 201 Query: 233 RSGAIAYAVRNNIV 246 + + YA++ ++ Sbjct: 202 KPELVEYALKKKLL 215 >gi|238920403|ref|YP_002933918.1| csgAB operon transcriptional regulatory protein [Edwardsiella ictaluri 93-146] gi|238869972|gb|ACR69683.1| probable csgAB operon transcriptional regulatory protein [Edwardsiella ictaluri 93-146] Length = 206 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 I + + ++R RL + + A + + + LT RE+E L + +G Sbjct: 109 IAVFPAKTHQQALIR-RLRTLLMAAQEEGPGYMTPTPR------LTLRELEVLKAMQQGA 161 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ +I+ IL IS+NTV ++ +I +K + K R A+ +A Sbjct: 162 SNLDISRILYISKNTVRTHVYNIFKKISVKNRIQAVIWA 200 >gi|170768176|ref|ZP_02902629.1| transcriptional regulator CsgD [Escherichia albertii TW07627] gi|170122942|gb|EDS91873.1| transcriptional regulator CsgD [Escherichia albertii TW07627] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|21223862|ref|NP_629641.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|4467257|emb|CAB37582.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 1091 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKG 151 SE + L+RP +L V + L + + G D R + +AR + P Sbjct: 927 SEAVTAFECLERPYDLAR-VRYRLADALLAAGGDDERARATELLRLARTVADHLGARPLS 985 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + L + S LTGRE + L +S+G+T+ +IA L Sbjct: 986 DAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVSDGRTNRQIAEELF 1045 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS T + ++++I+ K R A A A R + Sbjct: 1046 ISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 1079 >gi|269838263|ref|YP_003320491.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269787526|gb|ACZ39669.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 875 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L +++G ++ EIA L +S TV ++++SI+ K +R AI A R Sbjct: 804 LTRREAEVLDLMAQGLSNTEIAGRLYLSPKTVEHHVSSILTKLNVSSRHEAIRVAERR 861 >gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 210 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L +++G ++ +IA+ LG + +T+ ++ +I++K T R+ A+ A+ Sbjct: 143 PRVALTARELEVLELMAQGLSNPDIAIRLGRAESTMKVHVRNILQKLGTDDRTAAVTTAL 202 Query: 242 RNNIV 246 R I+ Sbjct: 203 RRGII 207 >gi|300933089|ref|ZP_07148345.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 212 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 17/187 (9%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSE---KDKYYNVLQRPTELFCP-VFHTLPEN 119 VR L +++ +V D F + + L R ++ + T E Sbjct: 39 VRASLAGDEEPVDVVLMDLRFSQQVGAGEAGGVYATRAIRALPRAPQVLVVTNYSTDGEV 98 Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 + + Y + G+ ++ + ++ D Sbjct: 99 VGAVSAGAVGYLLKDCPPTELTDGIRKAARGESVMSSQVMGKLM-------------DSM 145 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE++ L G+++ +IA L ++ T+ +++ + K R+ A+A Sbjct: 146 NRPMETLTAREIDVLRLAGLGRSNRQIAKELVLTEATIKSHMGRVFTKLGVSNRTAAVAV 205 Query: 240 AVRNNIV 246 A I+ Sbjct: 206 ARERGIL 212 >gi|240172655|ref|ZP_04751314.1| transcriptional regulator, LuxR family protein [Mycobacterium kansasii ATCC 12478] Length = 968 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE+E L ++ G ++ I L IS NT N++ SI+ KT R+ A Sbjct: 900 DLAGPDGLTDREIEVLRLLAAGLSNRAIGERLYISTNTAANHVRSILIKTGAANRTQAAM 959 Query: 239 YAVRNNIV 246 YA + ++ Sbjct: 960 YAADHQLL 967 >gi|239940650|ref|ZP_04692587.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291444087|ref|ZP_06583477.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291347034|gb|EFE73938.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 46 DVVLMDIRMPGTDGLAATRMISADPELAAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGA 105 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190 + + + + ++ GL+A + A S + ++ LTGRE Sbjct: 106 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSQEGPDSAEYAERLAALTGRE 163 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L ++ G +D IA L +S TV ++ M K + R+ + A + +V Sbjct: 164 REVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 219 >gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 216 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 8/174 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----FHTLPENITPPAGMDNRYC 131 I P V + + +R +L V H+ + R Sbjct: 41 DIAEELRPHVAVMDIVMPGMGG-IEATRRLRKLGVAVVALSMHSDRHFVVEMFRAGARAF 99 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 L +G + +G L + E GL + + ELT RE Sbjct: 100 LLKDCATDELVGAIRAVVEGEAYLGPSI-ERGL--GMDLSSLDYLIAEEDQRMELTPREW 156 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E L ++EG+++ EIA L +S TV N+ S+M K + YA+R + Sbjct: 157 EILQLVAEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIRCGL 210 >gi|42524246|ref|NP_969626.1| two-component response regulator-like protein [Bdellovibrio bacteriovorus HD100] gi|39576454|emb|CAE80619.1| two-component response regulator homolog [Bdellovibrio bacteriovorus HD100] Length = 226 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E + I++GKT+ E+A L S +T+ + ++MRK +A++ N+ Sbjct: 166 LTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRKLNLSNAVEISVWALKRNL 225 >gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 76/199 (38%), Gaps = 22/199 (11%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107 +Y+ + ++ + +E I+ + P ++ + + E D Y +++ + Sbjct: 37 DYLEFRGYEVITAENGREAL--EILEHEVPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 93 Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 LF + + + Y F+ + + + + W+ Sbjct: 94 IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTIRWKEHQ 147 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + D +LT E++ + +++ G + EIA L +S+ TV ++++++ Sbjct: 148 TKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203 Query: 225 MRKTATKTRSGAIAYAVRN 243 + KT R+ +A+ N Sbjct: 204 LGKTNLHNRTELARWAIEN 222 >gi|296102946|ref|YP_003613092.1| sgAB operon transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057405|gb|ADF62143.1| sgAB operon transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N +T + R+ GL + + LA+Y +Y + + LT Sbjct: 105 NGVFYVTEEENRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 237 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L I++G EIA L +S TV N+ A I +K R+ + YA+R ++ Sbjct: 175 LTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALVRYALRAHL 234 Query: 246 V 246 + Sbjct: 235 I 235 >gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 12/168 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132 P L+ + + +D + + + R L F + + Sbjct: 61 PDVLLMDIRMPRRDGLWALAELGRRGLLGPGRSRVLMLTTFDLDAYVDDALTAGASGFLL 120 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 ++ + + I + + + + D + +LT REV+ Sbjct: 121 KNSSYEQLTEAVRAAAAGHSALSPAVTRRI--IEGHLSGRPRPSDQELARLRDLTEREVD 178 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L I +G ++ EIA L +S +TV +++ ++ KT ++R+ A A Sbjct: 179 VLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA 226 >gi|145596642|ref|YP_001160939.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305979|gb|ABP56561.1| response regulator receiver [Salinispora tropica CNB-440] Length = 235 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 6/162 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143 +R + + +++ E V T E+ + + + I Sbjct: 56 LRMPGMGGIEATGQIVRLSPETRVLVLTTFDEDDHVFGALQAGAAGFLIKNMSLDDILDA 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + ++ L + + + V +T RE E LT + G ++ Sbjct: 116 VRTVAHGNGLLAPSVTRR---LIKHVVDTRTAPTVPRRPLSGITEREREVLTLVGRGLSN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S TV YI ++ K + R + A + Sbjct: 173 SEIADELRLSHATVKTYITRLLSKLGARDRVHLVIAAYEAGL 214 >gi|117927574|ref|YP_872125.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648037|gb|ABK52139.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 199 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE + L +S G ++ EI L +S +T+ + + RK R+ A+A +R Sbjct: 135 DVPLTERERQVLDGMSRGMSNYEIGRELFLSEDTIKTHARRLFRKLGATDRAQAVALGIR 194 Query: 243 NNIV 246 +V Sbjct: 195 AGLV 198 >gi|94971954|ref|YP_593994.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554005|gb|ABF43920.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 208 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 32/181 (17%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP--------------VFHTLPENIT 121 +V P ++ + + E D R EL P V + + Sbjct: 42 RLVQDLRPDVVLMDVQMPELDG-VRATARIRELGLPSRVLILTTFDTEGYVLDGIRAGAS 100 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 D R L V R+ G + + P + LL Q Sbjct: 101 GYLLKDMRPTELFDVVRRVAAGELFIQPSVAS------KYLHLLTTRQLGAEH------- 147 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE + L ++ G ++ IA L IS +TV N++ SI+ K + R+ A A Sbjct: 148 ----LSPREEDVLRLLARGLSNKAIARDLAISESTVKNHVKSILAKMQVRNRTEAALNAS 203 Query: 242 R 242 R Sbjct: 204 R 204 >gi|313497133|gb|ADR58499.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 905 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 16/196 (8%) Query: 60 HFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118 H LL Q+ LD I + SD D V+ +A K N + + Sbjct: 716 HPLLPLHIALQQASLDRIQLRSD---DAVQRLACLVKRGQANGG----MMLTVSALSQWL 768 Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLL---AAYQA 170 ++ G + + L + G + L K L ++L A Sbjct: 769 SLLLDEGKEGQAAQLLPSLLEAAHGGVMQPMQPLLEKHPQWLHEQLQAGAACPVQAELLK 828 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ G L+GRE+ L I++G ++ +I+ L IS +TV + + I K Sbjct: 829 HLPPVPVASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGV 888 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ A+A A ++ Sbjct: 889 ERRTQAVAKAKFLGLL 904 >gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 178 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G L + M + LT RE E L + +G + EIA LG+S TV +++ Sbjct: 98 GALLRFTRAMLPRHLSAVPTHAPLTSRESEVLQLVRKGMANKEIARRLGLSEKTVKFHVS 157 Query: 223 SIMRKTATKTRSGAIA 238 +++ K +R+ IA Sbjct: 158 NVLAKAHVASRAQLIA 173 >gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] Length = 74 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|254393534|ref|ZP_05008669.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811039|ref|ZP_06769682.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|326439619|ref|ZP_08214353.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|197707156|gb|EDY52968.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294323638|gb|EFG05281.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 35/75 (46%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ D + LT RE E L I EG T+ +I L ++ TV N+I+ ++ K Sbjct: 149 RAPRTPDPEADRLGGLTEREREILELIGEGLTNRQIGARLYLAEKTVKNHISRLLAKLGV 208 Query: 231 KTRSGAIAYAVRNNI 245 + R A A + + Sbjct: 209 ERRIQAAVLATQFRL 223 >gi|108760620|ref|YP_631897.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108464500|gb|ABF89685.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 223 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 9/162 (5%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147 ++ V +R E+ + + + + + Y +IR G+ + Sbjct: 63 GINGIQVTQRVKRRAPEVEILILTSFDDETKVYEAIQAGASGYLVKRVGPEKIRSGIQEV 122 Query: 148 FPKG---RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 G I+ R W + QA ++ + + LT E E L ++++G ++ Sbjct: 123 MEGGTVLEPIIAKRFW--NYFQSVQAKSTQA-EKKLENPWALTPLEFEVLRYVAKGLSNA 179 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+ ++ + R TV +++ I RK + A+ A+R +V Sbjct: 180 EVGHVMTLERRTVRTHLSHIYRKMGVNSHVEAVVMALRAGVV 221 >gi|254505671|ref|ZP_05117817.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] gi|219551324|gb|EED28303.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] Length = 222 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201 + LL I+ D +W +A F+ + LT RE E + + G Sbjct: 114 ISLLIKGMEKIMNDEMWLSRKVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++ +IA L +S NTV ++ +I +K K R A+ +A Sbjct: 174 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|209964999|ref|YP_002297914.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] gi|209958465|gb|ACI99101.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW] Length = 214 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 12/185 (6%) Query: 64 VRWDLFQEQKLDSIVS---SDWPFDLV-RCMALSEKDKYYNVLQRPT-ELFCPVF----- 113 + F+ D ++ D FDL+ + + + + Q + PV Sbjct: 25 ADANFFEAGTFDEVMELCQGDQDFDLILMDLQMPSWPGFPGIQQICEIQAGTPVVIVSAS 84 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 + + + Y + V + L L+F G + + G + A Sbjct: 85 ESQSDVRAALDAGASGYIPKSSSVKIMLSALNLVFSGGIYVPPAAIQGEGQSSGSAAQG- 143 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 LT R+ + L + EGK++ +IA LG+S TV ++ ++MR + R Sbjct: 144 -GGHASGPGMPALTQRQRDVLRCLREGKSNKQIAYELGLSEGTVKIHVTAVMRSLGVRNR 202 Query: 234 SGAIA 238 + A+ Sbjct: 203 TQAVI 207 >gi|197658985|emb|CAR47858.1| putative DNA binding response regulator [Rhodococcus sp. PY11] Length = 222 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L + G T+ +IA L +S TV ++ + K R+ A+A A+R + Sbjct: 161 LTPRELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKLDASDRTAAVAQALRLGL 220 Query: 246 V 246 + Sbjct: 221 L 221 >gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 214 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 21/217 (9%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + E + F ++ E+ L I P ++ + + + Sbjct: 8 VDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 64 Query: 98 -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + + P+ N + Y D + +G Sbjct: 65 ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 122 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVI 209 I+L+ + E + +K +VH K + LT +E+ L I+ G + EIA Sbjct: 123 EILLQPNIMEKIV-------KYKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFD 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +GI+ TV Y+ +I K +RS A+A ++ ++ Sbjct: 176 MGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 212 >gi|302554590|ref|ZP_07306932.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472208|gb|EFL35301.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 217 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + +T RE E L ++EG TS EI +L IS TV + A++++K + R YA+ Sbjct: 151 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGMRDRLELTRYAI 210 Query: 242 RNNIV 246 R ++ Sbjct: 211 RAGLI 215 >gi|296140116|ref|YP_003647359.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028250|gb|ADG79020.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 215 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 6/156 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L+ DK+ + P F + + D + + L Sbjct: 61 GLTLLDKFTRMPSPPVVAMLTTFDSDEYIAHALRRGAAGFLVKDTDPDHLVQLVRSLAEG 120 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G ++ + + + V L+ RE E L +++G ++ EI + Sbjct: 121 GVVLSP------KVASQVVSGFLGGVAVDDLGTERLSPREREVLVLLADGLSNLEIGRTM 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV +++++++ K R A A R ++ Sbjct: 175 HLSVGTVKDHVSALLAKLGVANRVQAALVAQRAGLL 210 >gi|17546614|ref|NP_520016.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428913|emb|CAD15597.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 252 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 24/189 (12%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +D IV+ D+P + + + +++R PV+ + P A D + + Sbjct: 52 LMDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRSPVYF---DAAAPTAETDRVWLA 108 Query: 133 ------LTFDVARIR------IGLMLLFPKGRIILRDRLWEI---------GLLAAYQAN 171 L VA IG F + I L + L A+ Sbjct: 109 KFIMHDLRNAVADGIYDEGHCIGTYFSFHRLPSINAPFLTSVLRDLTPVLHRTLMRAVAD 168 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K++ L+ RE + WI +GK++ EIA++ IS NTV ++ IM KT Sbjct: 169 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228 Query: 232 TRSGAIAYA 240 R G A Sbjct: 229 NRVGVAVLA 237 >gi|333009595|gb|EGK29047.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-272] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|307545446|ref|YP_003897925.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Halomonas elongata DSM 2581] gi|307217470|emb|CBV42740.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Halomonas elongata DSM 2581] Length = 219 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 12/134 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D + + + +G M++ +L + L Q Sbjct: 96 VVAALHAGADGYLLKDMDPDDMVHQLRQAALGRMVISDSLASLLAEALRN-------QKG 148 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D+H LT RE E L ++ G ++ IA L I+ TV ++ +++K + Sbjct: 149 QSTAPDIH-----SLTQREREILRELAAGLSNKLIARRLDITEGTVKVHVKHLLKKLNLR 203 Query: 232 TRSGAIAYAVRNNI 245 +R A +AV+ I Sbjct: 204 SRVEAAVWAVQEGI 217 >gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 14/163 (8%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143 VR +S + + R ++ + + + + + Y A + Sbjct: 57 VRMEKMSGIEACREIKSRDPQVNILMITSYTDERAILASTLAGASGYLLKNVSRAELLKA 116 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + ++ + L AN K +T RE E L ++ G T+ Sbjct: 117 IRRVATGASLLDPKQ--RQQALTTATANAPKE---------AITEREREVLALVARGYTN 165 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L +S T N+++ I+ K RS A YAV +N+V Sbjct: 166 KQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAVYAVEHNLV 208 >gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] Length = 218 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+ +N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212 >gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] Length = 891 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 11/147 (7%) Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 P + Y + D RIG +L L Y Sbjct: 744 PAAALAVMGALLKSACAEGYARILLDEGGARIGPLLRQVARTREASATATRDPALTEYVT 803 Query: 171 NMFKSY-DVHWGKDF----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + ++ D +D LT +E+ L ++EG ++ IA L +S +TV Sbjct: 804 RLTQACGDFDESEDSTAGARPQLLDPLTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRT 863 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I K +R+ A+A + R ++ Sbjct: 864 HLRNINNKVGAHSRTQAVAISRRLGVI 890 >gi|170077264|ref|YP_001733902.1| LuxR family transcriptional regulator [Synechococcus sp. PCC 7002] gi|169884933|gb|ACA98646.1| transcriptional regulator protein, LuxR family [Synechococcus sp. PCC 7002] Length = 91 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 40/64 (62%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + L+ RE+E + ++ G T+ EIA L IS+ TV+N+I++I+ KTAT R + +A Sbjct: 7 ASEAALSEREIEIVDLVAAGLTNHEIAARLDISKRTVDNHISNILTKTATDNRVSLVRWA 66 Query: 241 VRNN 244 ++ Sbjct: 67 LQWG 70 >gi|83644295|ref|YP_432730.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632338|gb|ABC28305.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 902 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 I L+ Y A + H EL+ RE L +S G++++EIAV L I+ +TV Sbjct: 816 ISELSVYSAPQTRPQRNHSNSPLMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKT 875 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ +I K + R+ A+A A +V Sbjct: 876 HLRNIYAKFGVRRRTQALAIAREKGLV 902 >gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 64/187 (34%), Gaps = 18/187 (9%) Query: 64 VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123 + D Q+ L W E D+ + + PV L Sbjct: 67 YQIDPVQDAALLVSAPFVWSH---------EGDQSDVMARVLRAEHRPVLDYLRH----- 112 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLA-AYQANMFKSYDV--H 179 G+ + P G DRL +GLL ++ ++ + H Sbjct: 113 RGLTRGVTVPIRCGEGALATFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASH 172 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE ECL EG T+ EIA + S TV ++++ RK + R AIA Sbjct: 173 LCPVVHLTRRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIAR 232 Query: 240 AVRNNIV 246 A ++ Sbjct: 233 AAYYRLL 239 >gi|330952743|gb|EGH53003.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 238 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 19/196 (9%) Query: 60 HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFH 114 F+LV E+ D VR +A S+ + +L RP Sbjct: 53 GFVLVSGPEAGEKN-SHCAERQDVADTVRGVACSQPL-FTGLLNRPVSSNDRGEMIDAGT 110 Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQA 170 T G + + L F G L + + ++R+ + L Sbjct: 111 TSDGMTAFYLGEEKAFSLLRFANKEAGTGNAQGEYSLATEVKSLVREFHHK---LTGLVM 167 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + +S + +F +T RE E W + GKT +EIAV L IS+ TV+ +I++++ K Sbjct: 168 GLNESDE-----NFTITDREKEVYIWTAIGKTCNEIAVNLNISKRTVDFHISNVISKLGV 222 Query: 231 KTRSGAIAYAVRNNIV 246 +T+ A + I+ Sbjct: 223 RTKLQACIQLTKMGIL 238 >gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] Length = 202 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 21/196 (10%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPE 118 ++V + + ++ D FD+ S + + +R L L Sbjct: 1 MIVDDHPLMRRGIRQLLELDPLFDVAA--EASSGSEAIALAERIQPDLILLDLNMKGLSG 58 Query: 119 NITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---- 170 T A G+D R LT AR + ++ +L+D E L +QA Sbjct: 59 LDTLKALRNEGVDARIIILTVSDARSDVYALVDAGADGYLLKDSEPETLLAQIHQAAEGH 118 Query: 171 --------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 N + +LT RE++ L ++ G ++ +IA L IS TV +I Sbjct: 119 NVFSEAVLNYLGTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIR 178 Query: 223 SIMRKTATKTRSGAIA 238 +++RK ++R A Sbjct: 179 NLLRKLNVRSRVAATV 194 >gi|284030392|ref|YP_003380323.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809685|gb|ADB31524.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 217 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 16/135 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 + H + D + L + G +L P L RL AA Q Sbjct: 93 ILHAVEAGAAGYLLKDTPHAELLDGIRAASRGETVLAPPVAARLMSRLRTPAAPAAVQ-- 150 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + RE+E L ++ G ++ EI L I TV ++ + K Sbjct: 151 --------------PSPRELEVLAAVARGLSNAEIGRELFIGEATVKTHLQRLFSKLDVD 196 Query: 232 TRSGAIAYAVRNNIV 246 R+ A+ A+ ++ Sbjct: 197 DRTRAVTVAIERGLL 211 >gi|146307561|ref|YP_001188026.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145575762|gb|ABP85294.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 907 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ Sbjct: 820 LAELLREQCRRMAIDPESFEENQDVSHREREILRLVAAGLSNRDIAQTVHLSEATIKWHL 879 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++ K ++R+ A+ ++ Sbjct: 880 HNLFSKLGVRSRTQAVLKGKSLGLL 904 >gi|159898988|ref|YP_001545235.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159892027|gb|ABX05107.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 860 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 7/156 (4%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 + N + + + L P + +LT + I +L G Sbjct: 710 ALTTAERINFVPLLVSIHATLAMVLARQGQLPKALTELQHALTIAEPELIIQPLLDLQAG 769 Query: 152 RIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 I L +L L L N ++ D +T RE E L +++ G + IA L Sbjct: 770 LIPLLQQLPSSPLVLRLLHHNRLETLD------LAITPREHEILRYLAAGLGNRAIAEAL 823 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ +T+ +I+++ K R+ AI A ++ Sbjct: 824 VIAESTLKRHISNLYLKLDVHNRTAAIVKAREQGLI 859 >gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911] gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911] Length = 74 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|315500154|ref|YP_004088957.1| two component transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315418166|gb|ADU14806.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 239 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 6/135 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L D+ L + G + L + + LA Sbjct: 109 VISALTAGADGYVLKDSAESELIGSIRHTLNGGSPISAPVAAYLLRHIRKDASLAVVAEP 168 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 +T RE+E L+ +++G + E A +L IS +TV ++ +I RK A Sbjct: 169 ELAEDAP------GITPREIELLSLLAKGLSYKEAASVLDISHHTVGTHVKAIYRKLAVN 222 Query: 232 TRSGAIAYAVRNNIV 246 +RS A+ AVR+ ++ Sbjct: 223 SRSEAVFEAVRSGLI 237 >gi|148240284|ref|YP_001225671.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848823|emb|CAK24374.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 241 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 20/233 (8%) Query: 31 DLLARMIPLDCTVSWTMRM--YALTEYVGASHFLLVRWDL---FQEQKLDSIVSSD---- 81 DL A++ L + + T A LL W + Q + + S D Sbjct: 2 DLSAQIPLLQEQSRQGHGLLRRSRTAIATADPVLLASWTIWFEGQGPLVAACTSEDDCLG 61 Query: 82 ----WPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMDNRYCSL 133 L+ C L E ++++R EL + P T ++ C Sbjct: 62 NIQSQAATLLLCTDLLESGSGISLVERALAVQPELKVLILLHRPIARTILNAIEAG-CHG 120 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 V G + I D + L++ + ELT RE + Sbjct: 121 ICAVQSAGTGAVATAFT--AIDSDGQYLDPLISGVLHHSRLPSSGQSLPLQELTMREEDV 178 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G +++ IA L +S TV ++++S++RK A K R+ A+ A R +V Sbjct: 179 LRGLCRGMSNEAIANDLVVSIETVKSHVSSLLRKLAAKDRTAAVVTAFREGLV 231 >gi|325283395|ref|YP_004255936.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324315204|gb|ADY26319.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 235 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%) Query: 105 PTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-- 161 +L PV + +LT + ++ + +L+D + Sbjct: 69 LMDLLMPVMDGIAATAEIRRCCPGTEVIALTSTLEESKVNGAVAAGATSYLLKDASSDLL 128 Query: 162 ---IGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILG 211 I A + + +DF LT +EVE L I+ G + IA L Sbjct: 129 NEAIHAAARGEVRLHPQAARRLVRDFRAPDMREHLTCKEVEVLQLIARGLNNKGIAAQLD 188 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS TV ++++ ++ K ++R+ A YA++ + Sbjct: 189 ISETTVKSHVSRLLGKLELESRTQAALYALKTGL 222 >gi|307300268|ref|ZP_07580048.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307321145|ref|ZP_07600549.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306893220|gb|EFN24002.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904434|gb|EFN35018.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 262 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 87/254 (34%), Gaps = 24/254 (9%) Query: 5 IQQVNIVLNREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMR-MYALTEYVGAS 59 + + + L ++ ++ + R+DL A + + R + L++ A Sbjct: 1 MYRASSGLGGFEDSKSVLPKKSKIVMLARTDLFAECLTQAIGARFQDREVVRLSD---AD 57 Query: 60 HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119 L L + ++++P + K ++ L V H + E Sbjct: 58 SLLDGNLVDVTLVMLYRVPTANFPSIIRMIHEFHPKAAIGLLVDNAEGLDASVSHLVEEG 117 Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANM 172 + L + + LL G L + LA Sbjct: 118 MIH------GVLPLNLHLDVCLTAIDLLMKGGEHFPAALLRRLAPKNPGERDLATRNETA 171 Query: 173 FKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 ++ D K F LT RE++ L I G + IA LG+S NTV ++ +I +K Sbjct: 172 SENVDPERRKGFGQVVLTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMN 231 Query: 230 TKTRSGAIAYAVRN 243 + R+ A + RN Sbjct: 232 VRNRTEAASRYFRN 245 >gi|307327036|ref|ZP_07606226.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887334|gb|EFN18330.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 229 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 4/164 (2%) Query: 87 VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR L + + +R P + F + + A + Sbjct: 56 VRMPKLDGVEATRLICEREGAPKVIILTTFDLDEYAFSALKAGAGGFMLKDVPPAELLAA 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + + ++ + A + E LT RE E + +++G + Sbjct: 116 IRAVHSGDAVVAPSTTRRLLDRFAPMLPGGGGSGGRVRPELERLTDREREVVLLVAQGLS 175 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L +S TV ++ I+ K + R + A +V Sbjct: 176 NGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 219 >gi|157146272|ref|YP_001453591.1| DNA-binding transcriptional regulator CsgD [Citrobacter koseri ATCC BAA-895] gi|157083477|gb|ABV13155.1| hypothetical protein CKO_02029 [Citrobacter koseri ATCC BAA-895] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N T D R+ GL + + LA+Y +Y + + LT Sbjct: 105 NGVFYATEDEERVVNGLQGILRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa] Length = 241 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K ++ Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229 >gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 215 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 4/170 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + P L F + + + Sbjct: 49 DVVCMDLRMSEGDGLTATRQIVAERQDSAPAVLVVTTFDMDADVFGALEAGADGFILKDC 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + L ++ + + A + ++++ LT RE E + Sbjct: 109 EPEELVDAVRRLALGYGLVDQSVTRRVIAEFARRQGRSENHEALGV----LTEREREVIQ 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G ++ EIA L + +TV +++ I+ K + R A+ +A RN + Sbjct: 165 LLASGMSNAEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214 >gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] Length = 873 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 +G +A D L+ RE L ++ G + EIA LG+S NTV ++ Sbjct: 787 VGFVAELLDERPAGTAAEAPGDSALSQRERAILRYLPSGLSKREIAGELGVSANTVKTHV 846 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +SI RK ++R+ A+A A ++ Sbjct: 847 SSIYRKLDVRSRAQAVARARELGLL 871 >gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16] gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 218 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 12/220 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + + AL + + F +V + + P ++ + Sbjct: 1 MTIRILLIDDHTLFRSGIRALLQR--QADFEIVDEAADGVEGIKR-AKQHRPDVILLDLN 57 Query: 92 LSEKDKYYNV------LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + + L R + V E G Y + + G+ Sbjct: 58 MPGLSGLEALQLLVEDLPRTAVIVLTVSEEAEELAAALRGGARGYLIKNIETEALIAGIR 117 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +I + L A + LT RE E + ++ G+++ E Sbjct: 118 RAAAGEPVISDSMTAK---LVAQFRAPAPVAAARQDEAPRLTAREREIVQGLARGESNKE 174 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA LG++ +TV ++ +I++K +R YAV + + Sbjct: 175 IARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214 >gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase modulator gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa] gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa] gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1] gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa] gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10] gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19] gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa] gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5] Length = 241 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K ++ Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229 >gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 9/172 (5%) Query: 80 SDWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENIT---PPAGMDNRYCSLT 134 S+ P V +A+ + L R + T+ +N L Sbjct: 56 SERPDLAVLDIAMPRLTGLQAARELSRTMPELRILMLTMYDNEQYFFEALKAGASGFVLK 115 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 R + + L L+ Y + + DV +T RE E L Sbjct: 116 SVADRDLVEACRAAMRDEPFLYPG-AVTALIRNYLDRVREGGDVPARA---ITEREEEIL 171 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG +S EIA +L IS TV + A++++K + R YA+R ++ Sbjct: 172 KLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 223 >gi|153008009|ref|YP_001369224.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151559897|gb|ABS13395.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 277 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT +E L W +EGKT EI++ILG++ TV ++ + K ++ A+ A+R+ Sbjct: 15 LTSQERIVLYWTAEGKTRWEISIILGVAETTVVTHLRNSRIKLGATNKTHAVVEAIRH 72 >gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580] gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. 168] gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. JH642] gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. SMY] gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5] gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis] gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580] gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5] Length = 74 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|167755537|ref|ZP_02427664.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|237734285|ref|ZP_04564766.1| response regulator [Mollicutes bacterium D7] gi|167704476|gb|EDS19055.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|229382515|gb|EEO32606.1| response regulator [Coprobacillus sp. D7] Length = 224 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 70/170 (41%), Gaps = 6/170 (3%) Query: 81 DWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLT 134 + P ++ + + D V + ++ + T ++ + + + Y Sbjct: 46 NIPDVILMDIRMPRMDGVYCTKMVKEAYPDVKIIILTTFDDDDFVFSALKFGASGYLLKG 105 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + + ++ + G +I D ++ L + AN + +V+ EL E + + Sbjct: 106 VSMDGLYQAILTVVSGGAMINPDIATKVFRLFSKMANTNYAINVNDDNVRELNKPEWKVI 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + G ++ EIA L +S TV NY++SI+ K + R+ +AV+ Sbjct: 166 QQVGFGLSNKEIAQKLFLSEGTVRNYLSSILSKLELRDRTQLAIWAVQTG 215 >gi|119714219|ref|YP_919361.1| metal-dependent phosphohydrolase [Nocardioides sp. JS614] gi|119526128|gb|ABL79498.1| metal-dependent phosphohydrolase, HD sub domain [Nocardioides sp. JS614] Length = 516 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 43/81 (53%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A + V L+ REVE L +++G ++ E+A L ISR T +++ + Sbjct: 434 AVVEAAGEQPAPVRGNWPSGLSDREVEVLRLVAKGLSNQEVAQTLVISRRTAEHHVQHVY 493 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K T TR+ A YA+ ++++ Sbjct: 494 AKIGTSTRAAAALYAMEHDLL 514 >gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 210 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------------IGLLAAYQANM 172 G+D R LT +R + ++ +L+D E +++ A+ Sbjct: 77 GVDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGKNVISDAVADY 136 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 137 LSSRSEQHDPFAELTERELDVLQEVARGLSNKQVAAQLHISEETVKVHIRNMLRKLDVRS 196 Query: 233 RSGAIAYAVRNN 244 R A + + Sbjct: 197 RVAATVMYLEHK 208 >gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 F L + L G ++P L+ Y Sbjct: 95 FFEALRAGASGYVLKSVADLDLLKACRATLRGEPFVYPGAV---------TALIQDYLNR 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 D+ +T RE E L I+EG ++ EIA LGIS TV+ + A+++ K + Sbjct: 146 ARHGDDLPGTI---VTSREEEVLKLIAEGYSTREIAGTLGISAKTVDRHRANLLAKLGLR 202 Query: 232 TRSGAIAYAVRNNIV 246 R YA+R ++ Sbjct: 203 DRLALTRYAIRVGLI 217 >gi|84497395|ref|ZP_00996217.1| putative LuxR-family transcriptional regulator [Janibacter sp. HTCC2649] gi|84382283|gb|EAP98165.1| putative LuxR-family transcriptional regulator [Janibacter sp. HTCC2649] Length = 972 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL LLA ++ LT RE E L ++ G ++ ++ L IS T Sbjct: 884 RLGAAPLLAEL-DDLTAPSAATAASPDHLTRREQEVLELVARGLSNGQVGQQLFISTKTA 942 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +++ I+ K +R+ A A A +V Sbjct: 943 SVHVSRILAKLGAASRTQAAAIARDRGLV 971 >gi|114046728|ref|YP_737278.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113888170|gb|ABI42221.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 87/218 (39%), Gaps = 17/218 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R+ ++ + +L S + V W Q+ + +D L+ + + Sbjct: 19 RVGLVEDQQLVRQGIASLIAI---SQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPV 75 Query: 95 KDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF 148 + + Q R + PV + + N + + ++ + + Sbjct: 76 LNGISLLKQLRAAQNPIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVA 135 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 G +I L ++ ++ A ++D+ L+ RE E L +++ G ++ EIA Sbjct: 136 QGGHLIEPSVLEQMQQ-SSATAQSVPTHDL-------LSEREREILGFMAGGFSNKEIAN 187 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ TV N++++I+ K + R+ A+ ++ +++ Sbjct: 188 AVFLAEGTVKNHVSTILTKLDCRDRTQAVLKGLQLSLI 225 >gi|320107298|ref|YP_004182888.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925819|gb|ADV82894.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 204 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 D L+ REVE L +S G ++ IA L +S +T+ ++ +I+ K R+ A+ Sbjct: 134 AEHAGDEALSPREVEVLRHVSAGHSNKVIASDLDLSEHTIKGHLKNILSKLGANDRTHAV 193 Query: 238 AYAVRNNIV 246 A+ + Sbjct: 194 MIALNRGFL 202 >gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ L+ + + Sbjct: 96 RAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRR--LITEFSKLSETPRPAAMTQV 153 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ EIA L ++ +T+ +++ ++ K + R+ A +A Sbjct: 154 ADLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEA 213 Query: 244 NIV 246 +V Sbjct: 214 RLV 216 >gi|302520045|ref|ZP_07272387.1| response regulatory protein [Streptomyces sp. SPB78] gi|318061142|ref|ZP_07979863.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079227|ref|ZP_07986559.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|302428940|gb|EFL00756.1| response regulatory protein [Streptomyces sp. SPB78] Length = 220 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + +L P V T + ++ R Sbjct: 67 MDLQLGPGIDGVEATRRLLALPAPPRVLVLTTYDTDADVTRAVNAGATGYLLKAERPE-- 124 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 LF + R +A ++ ELT RE + L +S+G + Sbjct: 125 --ELFAAIHAAAQGRTALSPPVAHRVLAHLRAP------RPELTPRERDILAQLSQGLGN 176 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L IS TV ++ + +K TR+GA+A A ++ Sbjct: 177 RDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 219 >gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 500 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 88/239 (36%), Gaps = 16/239 (6%) Query: 17 EQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73 E+ +P ++++ L R++ +D + L + + +V Q Sbjct: 268 EEGMLVTCTIPRQTEIKNGLIRLLIVDDQPFVRESLRTLLDRYEDLN--VVGLAEDGNQA 325 Query: 74 LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMD 127 +D + P ++ + + D + Q+ + +F T + + Sbjct: 326 ID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQDTEQAVESLRNGA 384 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + + + + + + L+ G +I + +I + + K +ELT Sbjct: 385 DGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEKKETPQSKATAYELT 440 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++G IA L +S TV NY ++ K + A+ A+ I+ Sbjct: 441 AREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVSNKEEAVQKALEIGII 499 >gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 229 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ LT RE E L I++G+++ E+A I +S NTV +YI ++ RK +RS A+ + Sbjct: 150 PGRGEGLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIRTLYRKIGVTSRSQAVLW 209 Query: 240 AVRNN 244 V + Sbjct: 210 GVNHG 214 >gi|307946119|ref|ZP_07661454.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307769783|gb|EFO29009.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 233 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 7/199 (3%) Query: 55 YVGASHFLLVRWDLFQEQKLDSIVSSDWP---FDLVRCMALSEKDKYY-NVLQRPTELFC 110 +GA+H L+ + + WP D + +LS D L + Sbjct: 33 RMGATHVLITGLPMPNRPIDSLVHRFRWPDQRNDGIESTSLSANDSALMLGLASNRAMVW 92 Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAY 168 + E+ A + V + ++ G + + L + +L+ Sbjct: 93 TISAGDMEHSDLLAAAGEGNQVVIVPVTELHPFQAFVYASGPSLQANKWELAGLEVLSNA 152 Query: 169 QANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + V G + L+ RE + L + GKT+ EIA +L IS+ TV+ ++ + K Sbjct: 153 AFARLRDLGVVSGQRPGALSTRERKVLELTAYGKTAGEIADLLDISQRTVHAHLQNASVK 212 Query: 228 TATKTRSGAIAYAVRNNIV 246 ++ + A+R + Sbjct: 213 LNASNKTHTVVEALRYGQI 231 >gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 185 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 117 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 176 Query: 238 AYAVRNNIV 246 +A IV Sbjct: 177 RWAADRRIV 185 >gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] Length = 242 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K ++ Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229 >gi|15603675|ref|NP_246749.1| NarP [Pasteurella multocida subsp. multocida str. Pm70] gi|12722232|gb|AAK03894.1| NarP [Pasteurella multocida subsp. multocida str. Pm70] Length = 209 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 L++ + + ++ F++V + + +P + L Sbjct: 8 LIIDDHPLMRRGIKQLMELAPNFEVVADAGNGSEGISLALQTQPDLIILDLNMKGLSGLD 67 Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164 T G+D R LT + I ++ +L+D + L Sbjct: 68 TLKALRAEGIDARILILTVSDLKSDIFTLIDAGADGYLLKDTEPDALLSQIQRIAQGEVI 127 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L+ + ++ + LT RE++ L I+ G ++ +IA L IS TV +I ++ Sbjct: 128 LSDSIKDALIERQMNADPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK +R A + Sbjct: 188 LRKLNVHSRVAATVLYFEHK 207 >gi|21219585|ref|NP_625364.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|8744963|emb|CAB95289.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 221 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ +A + + L + F + + Sbjct: 49 DVVLMDIRMPLLDGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + + G+ LT RE E + Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAVRSKEP--AAPGEMARLTEREREVMA 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 218 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 8/162 (4%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + S KD + + ++ L L P + S V +L Sbjct: 51 IETSSKDAWTKLKEQLVNLRIKCDIVLFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110 Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 R++L D+LW + + + + + +LT RE ++ +S G Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTDGDIEPIKLTKREKAIISLMSNGS 170 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + EIA L IS +TV ++ S RKT + R +++A +N Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 228 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 8/176 (4%) Query: 79 SSDWPFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134 S+ P D+V + L + +R + T + G+ Sbjct: 45 MSEHPVDIVLMDVQMPVLDGISGTRQLSKRFPGAKVIILTTFDDEDYVMGGLAAGASGFL 104 Query: 135 F---DVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + + + +I I L+ A ELT RE Sbjct: 105 LKDAEPETLLDAIRTVASGDAVISPRATNRIVAKLSEAPAETIPLSTADRRAIQELTERE 164 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L + G T+ EIA L IS TV ++ ++ KT ++ R A +A R +V Sbjct: 165 HEILIAVGRGWTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAYRTGLV 220 >gi|239942882|ref|ZP_04694819.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989342|ref|ZP_04710006.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 16/173 (9%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTF 135 P L+ + + E D VL++ L P F Sbjct: 47 PDVLLLDIRMPEVDG-LTVLRQVGTLTAPPAVAMLTTFDAARHIDDALRSGAVGLLMKNT 105 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 ++ + +L GRI+ + + + G LAA + LT RE + Sbjct: 106 APEQLVHAVRVLAAGGRILAPEAVGPVIEGYLAAG------RDSGAADRTGALTDREGQV 159 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G ++ EIA L +S TV ++++S++ K R A A R ++ Sbjct: 160 LALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 212 >gi|269838161|ref|YP_003320389.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269787424|gb|ACZ39567.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 983 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L +++G T ++A L +S TV+ ++ SI K +R+ A +A+ N + Sbjct: 923 LTPREVEVLRLVADGLTDAQVAERLFLSPRTVSQHLRSIYNKLGVSSRAAATRFALENRL 982 >gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599] gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599] Length = 76 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I+++M+K K RS A+ VR Sbjct: 14 LTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVRLG 72 >gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 229 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 8/168 (4%) Query: 86 LVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVAR 139 +V + L + D +R + V L + T A + Y Sbjct: 61 IVSDLRLPDGLAIDLLAEARERHPGIEILVISVLGDETTILAAIAAGASGYLLKDALPED 120 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWIS 198 I M + G I + + A Q + G+D LT RE++ L I+ Sbjct: 121 IHATAMEVLSGGSPISPS-IARFIVRRARQESSGAPAAAGPGEDAPRLTPRELDILWGIA 179 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G T +EIA L +SR+TV +I +I RK +TR A+ A++ ++ Sbjct: 180 KGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQCGLI 227 >gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG] gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF] Length = 223 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 2/137 (1%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 R L F A + + + + + I Sbjct: 84 RSRVLMLTTFDLDAYVDDALAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRI- 142 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 + + + + D + +LT REV+ L I +G ++ EIA L +S +TV +++ Sbjct: 143 -IEGHLSGRRQPSDQELARLGDLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSR 201 Query: 224 IMRKTATKTRSGAIAYA 240 ++ KT ++R+ A A Sbjct: 202 VLMKTGCQSRAQAAVLA 218 >gi|218460663|ref|ZP_03500754.1| two component transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 61 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 31/54 (57%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T RE E L WIS+GK + +I ILG+S TVN ++ I K + R+ A A Sbjct: 1 TQRESEVLLWISKGKATRDIGEILGLSARTVNTHLEQIYVKLGVENRASAAVKA 54 >gi|146311212|ref|YP_001176286.1| DNA-binding transcriptional regulator CsgD [Enterobacter sp. 638] gi|145318088|gb|ABP60235.1| response regulator receiver protein [Enterobacter sp. 638] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 46/87 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGSSNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|57234510|ref|YP_181438.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57234583|ref|YP_181405.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224958|gb|AAW40015.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] gi|57225031|gb|AAW40088.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 224 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L + G ++ +IA L +S T+ ++++I +K + +R+ AI Y ++ Sbjct: 157 PLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRG 216 >gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] Length = 218 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +TV ++ +++RK +R A YA+ +N+ Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212 >gi|293409411|ref|ZP_06652987.1| conserved hypothetical protein [Escherichia coli B354] gi|291469879|gb|EFF12363.1| conserved hypothetical protein [Escherichia coli B354] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|284029210|ref|YP_003379141.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808503|gb|ADB30342.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 213 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 4/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + + + + G + RL L Sbjct: 77 KFLALSVSDAAEDVIGVIRAGARGYVTKNISGTELVDAIGRVA-DGDAVFSPRLAGFVLD 135 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A A S D + L+ RE E L I+ G E+A L IS TV +++S++ Sbjct: 136 AFSGAIDIASVDEDLDR---LSQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVL 192 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK R +A +V Sbjct: 193 RKLQLSNRHELTRWATDRRLV 213 >gi|209696260|ref|YP_002264190.1| probable CsgAB operon transcriptional regulatory protein [Aliivibrio salmonicida LFI1238] gi|208010213|emb|CAQ80542.1| probable CsgAB operon transcriptional regulatory protein [Aliivibrio salmonicida LFI1238] Length = 215 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSD 204 ++ + I+ +W + ++++S LT RE E L +S G ++ Sbjct: 110 VISEGVKKIIDGEMWLSRKITNDLISIYRSKQNGILTSSVSLTTREKEILKLLSLGASNI 169 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +IA L +S NTV ++ ++ +K K R A+ + Sbjct: 170 DIANTLFVSENTVKTHLHNVFKKLNVKNRLQAMIW 204 >gi|78060780|ref|YP_367355.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77965330|gb|ABB06711.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 209 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 8/120 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 Y + + + + R + L + L + L Sbjct: 98 AMGYVPKSASPRTLLSAIRIALNGERYVPPLVLDDPAL--------QHPDGAAAARGSML 149 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T R++E L +++EG + IA LG+S T+ +I +I + R+ A A + ++ Sbjct: 150 TQRQIEVLRYLAEGVPNKVIADKLGLSEKTIKAHITAIFKALNVINRTQAAAAGRKAGLI 209 >gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 162 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 ++ F I +G + + I + E+ + A A + + + +T RE+ Sbjct: 47 AILFAAFGIWLGFRITRNRETIRETVVVREVLVPAEAPAPEPFAPNTAQQQTLGITAREL 106 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E LT I+ G ++ EIA L +S NTV + A K R+ A+ ++ Sbjct: 107 ETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELGLL 161 >gi|146283498|ref|YP_001173651.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145571703|gb|ABP80809.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] Length = 872 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + L+ RE+ L I++G ++ EIA L IS +TV + I K Sbjct: 797 EREPEISLPTADETVLSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRINTKLGV 856 Query: 231 KTRSGAIAYA 240 R+ A+A A Sbjct: 857 ARRTQAVAKA 866 >gi|312132068|ref|YP_003999408.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908614|gb|ADQ19055.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 204 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDFE-----LTGR 189 R + M+ +L+ E +L ++ S ++ ++ LT R Sbjct: 88 ERSYVSQMVQAGASGYLLKSASREEMEEAILTVSSGKLYMSLELDISREEIKKMPVLTTR 147 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L I+EG T+ +IA L +S +TV+++ +++ K +G I +A +N ++ Sbjct: 148 EREVLVLIAEGLTNPQIAERLFVSPHTVDSHRKNLLTKFEVNNTAGLIKWAAKNGLI 204 >gi|257064489|ref|YP_003144161.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792142|gb|ACV22812.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 258 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 150 KGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + R I D + + + + KS + K LT RE E L I++G+++ EIA Sbjct: 162 RDRRIASDSPAKRRMTQERYSRIVKSTIEPAKPKGDALTPREQEVLVHITDGRSNAEIAR 221 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 I+GIS TV +++ I K +R+ IA Sbjct: 222 IMGISEATVKKHVSHIFDKYNVFSRTELIAR 252 >gi|269925757|ref|YP_003322380.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789417|gb|ACZ41558.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 1648 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTS-DEIAVILGISRNTVNNYIASIMRKTATKTR 233 S V LT RE E L + G TS +++ LG+S +TV ++ +I+ K ++R Sbjct: 1574 SRPVRSSSLQMLTDREQEILQLLVNGVTSTKDLSRQLGVSEHTVKYHLRNILSKLHLQSR 1633 Query: 234 SGAIAYAVRNNI 245 + +A+AV++ + Sbjct: 1634 AQVVAWAVQHGL 1645 >gi|154509662|ref|ZP_02045304.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC 17982] gi|153799296|gb|EDN81716.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC 17982] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 9/156 (5%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 +E ++ L V + + Y + + + + + Sbjct: 68 AEVASTCRDIEGLHFLALSVSDAAEDVVQVIRAGARGYVTKSIATPDLVEAIGRVAAGDA 127 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210 LA + + F + +V + L+ RE E + I+ G T E+A L Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSTTDTELDLLSAREQEVMRLIARGYTYKEVAHDL 180 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +++S++RK R+ +A++ +IV Sbjct: 181 FISIKTVETHVSSVLRKLQLSNRNELTRWAMQRHIV 216 >gi|116073608|ref|ZP_01470870.1| possible DNA-binding response regulator [Synechococcus sp. RS9916] gi|116068913|gb|EAU74665.1| possible DNA-binding response regulator [Synechococcus sp. RS9916] Length = 244 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE + L + +G T+ +IA +S TV ++++S++RK A R+ A+ A R Sbjct: 172 PLSLREEDVLRGLCKGMTNQQIADAFTVSTETVKSHVSSVLRKLAVTDRTQAVVKAFREG 231 Query: 245 IV 246 +V Sbjct: 232 LV 233 >gi|70731182|ref|YP_260923.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345481|gb|AAY93087.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 222 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGL 144 M L +LQ+ V T+ ++ Y + L Sbjct: 59 RMPLLNGLGAARLLQQRQPEVKVVIFTMDDSPDHLEAAMAAGAVGYLLKDASREEVLDAL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + + + LT RE + L ++ G ++ Sbjct: 119 QRVARGEEALNS------AVSARLLRRMSERGNGQAPQAQALTARERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A + +V Sbjct: 173 EIGEKLGITTGTAKAHVERVIGKLGAADRTQAAVRGMALGLV 214 >gi|84497934|ref|ZP_00996731.1| putative two-component system DNA-binding response regulator [Janibacter sp. HTCC2649] gi|84381434|gb|EAP97317.1| putative two-component system DNA-binding response regulator [Janibacter sp. HTCC2649] Length = 238 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + + + G + RL +L Sbjct: 101 RFLALSVSDAAEDVIAVIRAGARGYVTKTITARDLGTAVRRVA-DGDAVFSPRLAGF-VL 158 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ A + +V D L+ RE E + I+ G E+A L IS TV +++S++ Sbjct: 159 DAFGAAAGEIAEVDEELD-RLSAREREVMRLIARGYQYKEVAKELFISVKTVETHVSSVL 217 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK +R A+A+ +V Sbjct: 218 RKLQLSSRHELTAWAMGRRLV 238 >gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 214 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 11/114 (9%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + D R+++ L+ K + ++++ +GL L+ RE E Sbjct: 107 VVNDRDRLQMVLIETHEKMLTLSQNKINVLGL-----------KGTGISSKTLLSPRENE 155 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L W S GKT EIA+I GI+ TV +I ++++K AI V ++ Sbjct: 156 VLHWASMGKTYQEIALITGITSRTVKYHIGNVVKKLGVINAKQAIRLGVELELI 209 >gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A] gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 231 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222 Query: 238 AYAVRNNIV 246 +A IV Sbjct: 223 RWAADRRIV 231 >gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579] gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L] gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus anthracis str. A2012] gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442] gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193] gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389] gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W] gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108] gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134] gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97] gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187] gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264] gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842] gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102] gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676] gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603] gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185] gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550] gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621] gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248] gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055] gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North America USA6153] gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B] gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum] gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94] gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI] gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579] gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L] gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193] gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442] gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389] gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W] gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108] gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134] gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97] gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187] gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264] gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842] gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102] gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621] gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550] gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185] gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603] gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676] gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248] gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI] gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis CT-43] Length = 74 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|320106073|ref|YP_004181663.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924594|gb|ADV81669.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 239 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 43/85 (50%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L+ A M K+ K F LT RE+E + I EG ++ ++A IS TV ++ Sbjct: 152 VNLVMALHGLMQKAAAQPERKTFGLTPRELEVVGCIVEGCSNKDVARQFNISEETVKRHL 211 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++I KT TR +A+ + +V Sbjct: 212 SNIFDKTGVSTRLELALFAISHKLV 236 >gi|298252386|ref|ZP_06976187.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297545702|gb|EFH79572.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 44/93 (47%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +++ R + + N+ + L RE+E L ++EG+++ EIA L ++ Sbjct: 109 VVQSRFPDFAHHNSEPHNISSPHQPVQQSLVTLNKRELEVLRLLAEGRSNQEIADTLIVA 168 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++T+ ++ I K +R+ AI A + + Sbjct: 169 KSTIKWHLKQIYSKLNVHSRTQAIVCARQIGFL 201 >gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 220 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G+ LT RE E L I++G+ + EIA + +S NT+ +YI S+ RK +R+ A+ + Sbjct: 142 PGRAEGLTDREAEILALITQGRGNAEIASMTYLSPNTIKSYIRSVYRKIGVSSRTQAVLW 201 Query: 240 AVRNN 244 V + Sbjct: 202 GVHHG 206 >gi|284032390|ref|YP_003382321.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811683|gb|ADB33522.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 228 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTS 203 +L+ + L + +++ + G EL+GR +E + I+ G+T+ Sbjct: 113 LLVEAVRAACNGEALVSPSITLRLLSHLNATAPRGRGMPSPELSGRALEVVRAIARGRTN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS +TV +++A+I K + R+ +A N++V Sbjct: 173 QEIAAELFISLSTVKSHLAAIQAKLGVRNRTEIAVWAWENHLV 215 >gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 74 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A Sbjct: 3 DKSFQPKPLLTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQA 62 Query: 237 IAYAVRNN 244 + +R Sbjct: 63 VIELLRMG 70 >gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 241 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT RE+ L I G T+DEIA L + TV +I S++ K R+ A A+ Sbjct: 176 RENPLTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQAL 235 Query: 242 RNNIV 246 R+ +V Sbjct: 236 RSGLV 240 >gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 217 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +T RE+ L I+ G S EIA +GIS TV ++ +I K +RS A+A A+ Sbjct: 150 NASITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIE 209 Query: 243 NNIV 246 I+ Sbjct: 210 KGII 213 >gi|323156843|gb|EFZ42977.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli EPECa14] Length = 203 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 122 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 181 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 182 FKKIAVKNRTQAVSWA 197 >gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 222 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------F 184 + +RI + + F R L L L ++ F + H + Sbjct: 83 PVHLPFSRIGMVALSCFDNLRADLSAELKRHYYLIHLLSHFFINDYAHLSRKDRWLPTWA 142 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT EV CL WI GKT DE+A I+G +R T+ ++ + +K R+ A+ A + Sbjct: 143 ALTPLEVSCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGAVNRTQAVFLAAQLG 202 Query: 245 IV 246 + Sbjct: 203 FL 204 >gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 199 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 42/82 (51%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 ++A + + D +G++ LT RE E L +++GK + EIA L I+ TV NYI+ Sbjct: 115 SIMAGRRIYAPELVDEAYGQENPLTEREKEVLLLVADGKNTKEIASQLYITTGTVRNYIS 174 Query: 223 SIMRKTATKTRSGAIAYAVRNN 244 I+ K R AI ++ Sbjct: 175 VILDKLGVSNRIEAIMHSKEKG 196 >gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 312 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 33/69 (47%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L A D + F LT RE E L WI+ GK + +I ILG++ TVN ++ I Sbjct: 230 LFRLSAANPHREDERLRQAFGLTQRESEVLLWIARGKPNRDIGEILGLAARTVNKHLEQI 289 Query: 225 MRKTATKTR 233 K + R Sbjct: 290 YVKLGVENR 298 >gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614] gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614] Length = 218 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 9/169 (5%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + E D + + L E + G L D Sbjct: 48 HPDVVLMDIRMPELDGLEATRRILAAGDTARVLVLTTFNLDEYVYEALGAGASGFVLKDD 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 I + G +L + ++ + + LTGRE+E Sbjct: 108 PPEQLIAAVRTIADGDALLSPTVTRR-VIREFTRLRRQPPPAAVAT---LTGRELEVFRL 163 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I++G ++ EI L IS TV ++ + +K + R+ AI A + I Sbjct: 164 ITQGLSNAEIGRELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTGI 212 >gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ L I++G ++ EIA L +S TV NYI+SI+ K + R+ Y ++ Sbjct: 159 LSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQLAIYYLK 215 >gi|295134891|ref|YP_003585567.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Zunongwangia profunda SM-A87] gi|294982906|gb|ADF53371.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Zunongwangia profunda SM-A87] Length = 207 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWIS 198 + L +I R IG A Y+ + ++ W DF+LT RE+E L I Sbjct: 100 VAGYLPKFVHTNELIEAIRKVRIGETAFYEEHTKAVSNIKIWTSDFKLTNRELEILQLIK 159 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +GK++ EI+ IL S+ T+ + +++RK K SG + +A++N Sbjct: 160 DGKSTKEISEILHRSQFTIETHRKNMIRKLNLKNSSGLLHFAMKN 204 >gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 239 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 3/145 (2%) Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 + L F + + + + + + L Sbjct: 82 VPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSSPEDLSAAIRTVHAGEAAVAPRLLTR 141 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + + + G ELT REVE ++ G + I+ L IS +TV NYI Sbjct: 142 LISTYVRAPHGTRPTPTGLG---ELTPREVEVWRLMATGLDNTGISRTLDISLSTVKNYI 198 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 SI K A + R+ A+ A + +V Sbjct: 199 TSIFDKLAVRDRAQAVIVAYESGLV 223 >gi|269794993|ref|YP_003314448.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097178|gb|ACZ21614.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 258 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + + A +R + + ++ D L + Sbjct: 122 FDLDDRAAAAIRYGASGFLLKDATPAMLRDAIRTVHAGNAVLAPDDL------STLLDGR 175 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 F++ +LT +E E L ++ G + EIA +S +TV ++ +++RK + Sbjct: 176 FRARRPSPPGLEDLTPKEREVLAAVAAGLNNAEIARRAFVSESTVKTHVGAVLRKLGLRD 235 Query: 233 RSGAIAYAVRNNIV 246 R + A + +V Sbjct: 236 RVQVVVLAHEHGLV 249 >gi|222081319|ref|YP_002540682.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725998|gb|ACM29087.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 275 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + +F + ++ +G ++ P + D +AA + + L+ RE Sbjct: 158 AKSFALKQLALGDAIICPDAGSDVFDVHEHDAHMAAAPVQTTRIVNGVRN----LSPREK 213 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L + G+++ +IA L I+ +TV +I +I+RK + R+ A +A+ Sbjct: 214 SILKLVMGGESNKQIARRLEITESTVKVHIKTILRKIDVRNRTQAAIWAM 263 >gi|120404945|ref|YP_954774.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] gi|119957763|gb|ABM14768.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] Length = 301 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 G+ LT RE+E L +++EG T+ IA L IS TV ++ I+RK Sbjct: 223 QPPGARAPSGRAHSLTRRELEVLEFVAEGATNARIARALTISEGTVKGHMKHILRKLGAA 282 Query: 232 TRSGAIAYAVRNN 244 R+ A+++ + N Sbjct: 283 NRAEAVSHWLHLN 295 >gi|256396070|ref|YP_003117634.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362296|gb|ACU75793.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 13/182 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNR 129 +V P +V + + D P V T ++ + + Sbjct: 42 RLVRELHPDVVVMDIRMPGMDGIEATRQATAEPDPPKILVLTTFDDDEYVYGALRAGASG 101 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDF 184 + + + I + ++ +I L+A + A H + Sbjct: 102 FLLKSMALDAILDAIRVVAAGDALIAPSVTRR--LIADFTATPTTPKPHPEPLEHPHQIA 159 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++T RE E L + +G ++ EIA L IS T ++A + K + R A + Sbjct: 160 QITDREREVLALVGQGLSNAEIAERLIISAATAKTHVARLFAKLEARDRVHLAIIAFESG 219 Query: 245 IV 246 +V Sbjct: 220 LV 221 >gi|239928878|ref|ZP_04685831.1| chitinase two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437205|ref|ZP_06576595.1| response-regulator [Streptomyces ghanaensis ATCC 14672] gi|291340100|gb|EFE67056.1| response-regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 5/167 (2%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P ++ + + D V +R ++ L E + L A Sbjct: 48 PDLVLMDVQMPRLDGVSATRQVVGERLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTEA 107 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + + + +G I+ + L+A + A + + LT RE E L+ + Sbjct: 108 KDLVAAVRTVARGEGIVAPAVTRR-LIAEFAAKPARRTEADPAVLESLTRREREVLSCLG 166 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EG ++ IA L ++ TV +++ ++ K ++R A A I Sbjct: 167 EGLSNAGIADRLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI 213 >gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 231 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222 Query: 238 AYAVRNNIV 246 +A IV Sbjct: 223 RWAADRRIV 231 >gi|121998744|ref|YP_001003531.1| two component LuxR family transcriptional regulator [Halorhodospira halophila SL1] gi|121590149|gb|ABM62729.1| two component transcriptional regulator, LuxR family [Halorhodospira halophila SL1] Length = 217 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G+++ IA LGIS TV ++ S++RK +R A AV + Sbjct: 152 LTPRERDILERLAAGESNKVIARHLGISDGTVKLHVKSVLRKLGVHSRVEAAIKAVDFGL 211 >gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 217 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 5/164 (3%) Query: 84 FDLVRCMALSEKDKYYNVLQRPT-ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 F + + + ++R E+ VF PE + + V + Sbjct: 51 FLVDTRLEDVDAFVVVGEVRRARPEVRVVVFSAQPEAREVRQAYEAGAAAF---VEKRAD 107 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGK 201 LL R+ +RL + AA + V + L RE+E L +++G Sbjct: 108 LGALLQVIRRVRRGERLLDAARAAAIVQELEAGQRAVWARRAARLAARELEILQLLAQGC 167 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ EIA LG+S TV N ++ + K + R+ A +AVR I Sbjct: 168 SNQEIADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAGI 211 >gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 209 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 12/127 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---LAAYQANMFKSYDVHWG 181 G+ +R LT AR I M+ +L+D EI L L A + S V Sbjct: 77 GISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASRGEKVFSEGVASY 136 Query: 182 KDFE---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 D LT RE + L ++ G ++ EIA IL IS TV +I +++RK ++ Sbjct: 137 LDNRQHSADPLRLLTDRECDVLQEVARGLSNKEIAAILHISEETVKVHIRNLLRKLDVRS 196 Query: 233 RSGAIAY 239 R A Sbjct: 197 RVAATVM 203 >gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223] gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223] Length = 224 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSD 204 L+ +++L + L Y + V + + +LT RE + + + G ++ Sbjct: 118 LIKGMSKVLLDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNI 177 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 178 EIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|82544494|ref|YP_408441.1| DNA-binding transcriptional regulator CsgD [Shigella boydii Sb227] gi|157160562|ref|YP_001457880.1| DNA-binding transcriptional regulator CsgD [Escherichia coli HS] gi|170020563|ref|YP_001725517.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ATCC 8739] gi|188492464|ref|ZP_02999734.1| transcriptional regulator CsgD [Escherichia coli 53638] gi|300918637|ref|ZP_07135219.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|312971173|ref|ZP_07785351.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1827-70] gi|81245905|gb|ABB66613.1| putative 2-component transcriptional regulator for 2nd curli operon [Shigella boydii Sb227] gi|157066242|gb|ABV05497.1| transcriptional regulator CsgD [Escherichia coli HS] gi|169755491|gb|ACA78190.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|188487663|gb|EDU62766.1| transcriptional regulator CsgD [Escherichia coli 53638] gi|300414180|gb|EFJ97490.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1] gi|309701312|emb|CBJ00613.1| probable csgab operon transcriptional regulator [Escherichia coli ETEC H10407] gi|310336375|gb|EFQ01561.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1827-70] gi|323937781|gb|EGB34045.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|332094032|gb|EGI99084.1| putative csgAB operon transcriptional regulatory protein [Shigella boydii 3594-74] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|113969495|ref|YP_733288.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113884179|gb|ABI38231.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 85/218 (38%), Gaps = 17/218 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R+ ++ + +L S + V W Q+ + +D L+ + + Sbjct: 19 RVGLVEDQQLVRQGIASLIAI---SQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPV 75 Query: 95 KDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF 148 D + Q R + PV + + N + + ++ + ++ Sbjct: 76 LDGLSLLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIEIVA 135 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 G +I L ++ +A + + L+ RE E L +++ G ++ EIA Sbjct: 136 QGGHLIEPSVLEQMQQSSATAQS--------GPTHYLLSEREREILGFMAGGFSNKEIAN 187 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ TV N++++I+ K + R+ A+ ++ +++ Sbjct: 188 AVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225 >gi|318060080|ref|ZP_07978803.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080793|ref|ZP_07988125.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 239 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFD 136 P V +A+ + L R + T+ +N Y + Sbjct: 72 PDLAVLDIAMPRMTGLQAARELSRALPGLRMIVLTMYDNEQFFFEALKAGAGGYVLKSLA 131 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + L+ Y + + G LT RE E L Sbjct: 132 DRDLIEACRAAMRDEPFLYPGATG--ALIRNYLDQARRGEEPAGGS--TLTPREEEILKL 187 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG +S +IA +L IS TV + A+ + K K R YA+R +V Sbjct: 188 VAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 237 >gi|84495477|ref|ZP_00994596.1| putative two-component response regulator [Janibacter sp. HTCC2649] gi|84384970|gb|EAQ00850.1| putative two-component response regulator [Janibacter sp. HTCC2649] Length = 234 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 3/137 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQA 170 F L + ++ L + + G LL P+ R+I G AA Sbjct: 87 FDALRAGASGFLLKNSDPEQLVDAIRSVAGGHALLAPEVTTRVIAAMVGTGAGAAAATAT 146 Query: 171 NMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 S LT RE+E L + G+++ EIA L + T+ ++++ + K Sbjct: 147 PGTGSTSPGSADQISRLTDRELEVLILMGRGRSNAEIAADLFLGEATIKTHVSNCLAKLH 206 Query: 230 TKTRSGAIAYAVRNNIV 246 + R A+ +A ++ Sbjct: 207 LRDRVQAVVFAYEVGLI 223 >gi|333028632|ref|ZP_08456696.1| putative LuxR family DNA-binding response regulator [Streptomyces sp. Tu6071] gi|332748484|gb|EGJ78925.1| putative LuxR family DNA-binding response regulator [Streptomyces sp. Tu6071] Length = 212 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 83 PFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFD 136 P V +A+ + L R + T+ +N Y + Sbjct: 45 PDLAVLDIAMPRMTGLQAARELSRALPGLRMIVLTMYDNEQFFFEALKAGAGGYVLKSLA 104 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + L+ Y + + G LT RE E L Sbjct: 105 DRDLIEACRAAMRDEPFLYPGATG--ALIRNYLDQARRGEEPAGGS--TLTPREEEILKL 160 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG +S +IA +L IS TV + A+ + K K R YA+R +V Sbjct: 161 VAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 210 >gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae] Length = 257 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE E L W S GKT EIA ILGI TV +I S+++K AI V + Sbjct: 192 FSPRENEILYWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMNAKHAIRLGVELQL 251 Query: 246 V 246 + Sbjct: 252 I 252 >gi|253686983|ref|YP_003016173.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753561|gb|ACT11637.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 204 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R+ E L I+ G ++ +I+ L IS TV +++ SI R+ + R+ A Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|311893888|dbj|BAJ26296.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 117 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L + G ++ E+A L +S TV ++A I K + R+ A+ A + Sbjct: 50 LTPRELEVLALLGRGLSTTELAGELTLSEATVKTHVARIFAKLGLRDRAQAVVVAYETGL 109 Query: 246 V 246 V Sbjct: 110 V 110 >gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------------GLLAAYQANM 172 G+D R LT AR + M+ +L+D EI + + A Sbjct: 61 GVDARIIVLTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRHAAKGEKVFSNEVAQY 120 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 121 LSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 180 Query: 233 RSGAIAYAVRNN 244 R A + N Sbjct: 181 RVAATIMFLENK 192 >gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] Length = 230 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + + Y + T + + + + +G + +L +L Sbjct: 89 AFLALSVSDSAQDVGAVIRAGARGYVTKTINATDLVAAIHQVS-EGYAVFSPKLAGF-VL 146 Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A+Q D D EL + RE E + I+ G T E+A L IS TV +++ Sbjct: 147 SAFQGAPAAGADNDVNADEELDRLSSREQEVMRLIARGYTYREVAAELFISVKTVETHMS 206 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++RK RS +A I+ Sbjct: 207 AVLRKLQLSNRSELTRWATVRRII 230 >gi|209520820|ref|ZP_03269564.1| cyclic nucleotide-binding protein [Burkholderia sp. H160] gi|209498735|gb|EDZ98846.1| cyclic nucleotide-binding protein [Burkholderia sp. H160] Length = 344 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 13/178 (7%) Query: 78 VSSDWPFD-----LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----ITPPAGMDN 128 +++ WP D +V R PV L + Sbjct: 35 LTTSWPNDRKPDCVVMDGDCLRLASDELEAARRHSRTTPVIVLLSNAQRQHVDELIAAGV 94 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDF 184 C + + + L G + L L L A + H Sbjct: 95 SGCVEKSASSELLFSALRLAFAGGVYLPRSLVAASLHEPLAAAGAEADALRGPPHPDPHL 154 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT R++E L ++ G+++ IA L +S T+ ++ +I + +R A A R Sbjct: 155 HLTPRQIEVLALLARGRSNKMIARQLDVSEATIKTHLTTIFKALNVSSRGEASIVAAR 212 >gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 231 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222 Query: 238 AYAVRNNIV 246 +A IV Sbjct: 223 RWAADRRIV 231 >gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] Length = 934 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++ + +I L IS +TV +++ + +K R AIA A+R Sbjct: 866 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKAMRVG 925 Query: 245 IV 246 ++ Sbjct: 926 LL 927 >gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3] Length = 925 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++ L +++ + +I L IS +TV +++ + +K R AIA A R Sbjct: 857 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRTG 916 Query: 245 IV 246 ++ Sbjct: 917 LL 918 >gi|329938540|ref|ZP_08287965.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302513|gb|EGG46404.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 2/167 (1%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137 V + P V + L + D + + + L A +D+ + V Sbjct: 54 VPALRPHVAVLDVRLPDGDGVSVCRELRSHMPELACLMLTSFDDEEALLDSIMAGASGYV 113 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195 + G L+ + L + A A + + + LT RE E L Sbjct: 114 LKQIQGSDLVSAVRTVAAGQSLLDANATARLLARLRGGQEQEEEAEALPGLTPREREILA 173 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 I EG T+ +I L ++ TV N+I+ ++ K + R A A + Sbjct: 174 LIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 220 >gi|326331931|ref|ZP_08198217.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325950244|gb|EGD42298.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 12/134 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + T L V R+ G + P + +L +Q + Sbjct: 94 VLAAVKAGATGYLVKSASREELLDAVERVAAGDPVFTPGLAGL---------VLGEFQHS 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + +V K LT RE E L +++G + +IA L +S TV N++ + +RK Sbjct: 145 A--ATEVRGDKPT-LTDRETEILKLVAKGLSYRQIADRLVLSHRTVQNHVQNTLRKLQMH 201 Query: 232 TRSGAIAYAVRNNI 245 R YA+ + Sbjct: 202 NRVELTRYAIEQGL 215 >gi|226314788|ref|YP_002774684.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226097738|dbj|BAH46180.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 856 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 3/123 (2%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 + Y D ++ K + + + + + +L F + D+ Sbjct: 726 MAVTLAAPEGYVRTFLDEGSGVAKMLYSLYKSKNVSKQEMAYLSMLLKSVEKEFPTLDIQ 785 Query: 180 WGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +LT RE E L I EG ++ +IA L ++ TV ++ I K K R+ A Sbjct: 786 IRVSPALEKLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQVKNRAQA 845 Query: 237 IAY 239 I Sbjct: 846 IVR 848 >gi|126660738|ref|ZP_01731836.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126617979|gb|EAZ88750.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 245 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 ++ EI L M S LT +E+E L I G + +IA L ++ TV Sbjct: 164 QMREIDALDEDTQQMINSS--------SLTPKELEVLELIVAGCNNAQIAERLFVTVGTV 215 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ SI+ K R+ A A+R+ +V Sbjct: 216 KTHVRSILNKLCANDRTQAAVRALRSGLV 244 >gi|317506347|ref|ZP_07964159.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255357|gb|EFV14615.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 12/146 (8%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + + I Y + + + + + + Sbjct: 87 PKFLALSVSDSAADVIALIRAGARGYVTKSISGDDLAESVRRVASGDAVFSPG------- 139 Query: 165 LAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LA + + F S V LT RE++ L ++ G T EIA L IS TV Sbjct: 140 LAGFVLDAFASAAVAEEPVSNPDLDSLTPRELDVLRLLARGYTYREIASELFISVKTVET 199 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245 + ++++RKT R+ +A I Sbjct: 200 HTSNVLRKTQQSNRNALTWWAKDQKI 225 >gi|302867540|ref|YP_003836177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506060|ref|YP_004084947.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570399|gb|ADL46601.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412679|gb|ADU10796.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 215 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 45/102 (44%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 +L+ D L + ++ + L+ RE+E + I+ G+T+ Sbjct: 113 LLVEAVRAAYQGDALVSPSVTVRLLRHLTPPAPPRDERRPALSEREIEVVREIARGRTNL 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI L IS +TV ++++++ K + R+ +A + +V Sbjct: 173 EIGAELFISLSTVKSHVSAVQTKLGLRNRTEIAVWAWEHRVV 214 >gi|86740241|ref|YP_480641.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567103|gb|ABD10912.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 357 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLA 166 + P+ +P + P SL ++ + LR R+ + LL Sbjct: 225 VQVPIQGGVPGAVPFPRMPGLPRESLRLAYRELQE---VTEHVADPFLRGRIGGVSELLR 281 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 A K+ LT RE+E L +S G ++ E A L +S TV Y+ SIMR Sbjct: 282 GLLAEETKTVG-----RLTLTPRELEVLAQVSLGLSNVETARRLTVSPETVKAYLRSIMR 336 Query: 227 KTATKTRSGAIAYAVRNNIV 246 K + R+ A+ A + ++ Sbjct: 337 KLGVRNRTAAVHAARQMGML 356 >gi|194428408|ref|ZP_03060948.1| transcriptional regulator CsgD [Escherichia coli B171] gi|260843280|ref|YP_003221058.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|194413460|gb|EDX29742.1| transcriptional regulator CsgD [Escherichia coli B171] gi|257758427|dbj|BAI29924.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O103:H2 str. 12009] gi|323163719|gb|EFZ49538.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli E128010] Length = 216 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|163759735|ref|ZP_02166820.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162283332|gb|EDQ33618.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 217 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 14/177 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-------CPVFHTLPENITPPAGMDN 128 +V + P D+V C+ +S N +R F V + Sbjct: 44 DLVETHLP-DIV-CLDISMPGGGINAARRINATFPTVKIVMLTVSEADENVSDALEAGAS 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y A++ L + I D + LL N K + LT Sbjct: 102 GYILKGIGAAQLVEALSSVASGQSYISPD--LAVRLLTVATNNTTKKPEHPID---NLTR 156 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + L ++ G ++ E+ L + T+ +Y+ +I++K + R A A + Sbjct: 157 REEQILQLVANGLSNKEVGAALDLQEKTIKHYMTNILQKLHVRNRVEAALLARDRGL 213 >gi|116070777|ref|ZP_01468046.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116066182|gb|EAU71939.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 228 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 25/218 (11%) Query: 37 IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96 + + + E ++ ++ L+ + S F+L+ C E+ Sbjct: 26 GKIALAMRGRFFLRCFCESFSEKTYIGCAVT-DEDSCLEYLRSDQ--FELLICTDQLERG 82 Query: 97 KYYNVLQRPTEL---FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 Y ++++ E V L + I + ++ + I Sbjct: 83 NGYELVRKAKEQYPNLKVVVLALTDEIPVEHDKASWLEAVV--------------AEADI 128 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDEIAV 208 I + E +LA + ++S + G+ LT RE E L ++ G T EIA Sbjct: 129 IEDQKPLEAAVLAVMGHHSYRSPSLRGGELPYLSCPRLTPREYEVLDRLARGMTDKEIAE 188 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L +S T Y +++ R A+ +R +V Sbjct: 189 ALVVSEQTARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226 >gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 21/184 (11%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133 P ++ + + + Y +L++ E PV + +T + Y S Sbjct: 59 PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDVHWGK 182 FD + + + + +L++ +I + + + + + Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKIN 177 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 178 LPSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237 Query: 243 NNIV 246 NN+V Sbjct: 238 NNLV 241 >gi|317969061|ref|ZP_07970451.1| DNA-binding response regulator [Synechococcus sp. CB0205] Length = 236 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REV+ L ++ G + I L +S TV +++ I K K+R A +R Sbjct: 169 QLTPREVDILQLMAGGTENQGIGQRLHLSVETVKDHVRHIFHKLNAKSRIQAAVQGIRLG 228 Query: 245 IV 246 +V Sbjct: 229 LV 230 >gi|317124594|ref|YP_004098706.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588682|gb|ADU47979.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 540 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 48/106 (45%) Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + +G + L L L + A + G LT RE E L ++ Sbjct: 434 VALGALGDDVSATAELTVALRTFSELGSEPARREVERLLGAGLPGGLTAREAEVLRLVAS 493 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 G+T+ +IA L +S TV ++++I K A +R+ A AYA +++ Sbjct: 494 GRTNPQIAAELFLSDKTVARHLSNIFTKIAVTSRTAAAAYAREHDL 539 >gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1] gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 234 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K ++ Sbjct: 163 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 222 >gi|229590397|ref|YP_002872516.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229362263|emb|CAY49165.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] Length = 217 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 14/179 (7%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR- 129 EQ L IV D ++ + + + QR + +F A M+ Sbjct: 47 EQLLPDIVILDIRMPVLNGLGAARLLQ-----QRLPAIKVVIFTMDDSPDHLEAAMNAGA 101 Query: 130 --YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 Y + L + + + A M + LT Sbjct: 102 VGYLLKDASRNEVIEALQRVAAGEEALNT------AVSARLLRRMTERNAAGSLPTEHLT 155 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE + L ++ G ++ +I LGI+ T ++ ++ K R+ A + +V Sbjct: 156 PRERQVLGLVANGMSNRQIGEHLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214 >gi|297202823|ref|ZP_06920220.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717613|gb|EDY61647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 217 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 E L+ +Y + + D+ +T RE E L ++EG T+ EI +L IS TV Sbjct: 132 AERALVRSYLDRLHRGDDLPRRA---VTEREEEILKLVAEGHTTKEIGELLFISAKTVER 188 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 + A+++ K + R YA+R ++ Sbjct: 189 HRANLLHKLGMRDRLELTRYAIRAGLI 215 >gi|297201229|ref|ZP_06918626.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712908|gb|EDY56942.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 50/123 (40%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + + ++ G+ ++ ++ + + + + Sbjct: 96 RAGASGFLLKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSKLSESPRLMAAAHTAY 155 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT RE E L I++G ++ E+A L ++ +T+ +++ I+ K + R+ A +A Sbjct: 156 GDLTDRETEVLILIAQGLSNQEMAERLLVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215 Query: 244 NIV 246 +V Sbjct: 216 RLV 218 >gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 212 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 76/200 (38%), Gaps = 25/200 (12%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT------- 106 +Y+ + ++ + +E L+ + S P ++ + + E D Y +++ Sbjct: 27 DYLEFRGYEVITAENGREA-LEILEQSPVPDMIICDVMMPEMDGY-TFVEKLRDDSRTSW 84 Query: 107 --ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 LF + I + Y F+ + + R+I G Sbjct: 85 IPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACL--SRVIPPSMTSSSG- 141 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + ELT E++ + +++G + EIA L +S+ T+ ++++++ Sbjct: 142 -----------PTIQVPSNVELTPTELKVIQLVAQGMANREIAEKLNVSQRTIESHVSNM 190 Query: 225 MRKTATKTRSGAIAYAVRNN 244 + KT+ R+ +A+ Sbjct: 191 LNKTSLHNRTELARWAIETK 210 >gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 204 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE E L +++GK++ EIA L I TV ++ ++ RK R+ A A Sbjct: 143 KLTKRECEVLKGLTKGKSNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQAALMAYEAG 202 Query: 245 I 245 I Sbjct: 203 I 203 >gi|15801157|ref|NP_287174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 EDL933] gi|15830671|ref|NP_309444.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. Sakai] gi|26247175|ref|NP_753215.1| DNA-binding transcriptional regulator CsgD [Escherichia coli CFT073] gi|30062564|ref|NP_836735.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a str. 2457T] gi|56479799|ref|NP_706950.2| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a str. 301] gi|91210188|ref|YP_540174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UTI89] gi|110641216|ref|YP_668946.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 536] gi|110805049|ref|YP_688569.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 5 str. 8401] gi|117623229|ref|YP_852142.1| DNA-binding transcriptional regulator CsgD [Escherichia coli APEC O1] gi|157155649|ref|YP_001462271.1| DNA-binding transcriptional regulator CsgD [Escherichia coli E24377A] gi|168747192|ref|ZP_02772214.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4113] gi|168754516|ref|ZP_02779523.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4401] gi|168760623|ref|ZP_02785630.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4501] gi|168767694|ref|ZP_02792701.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4486] gi|168773880|ref|ZP_02798887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4196] gi|168783565|ref|ZP_02808572.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4076] gi|168799314|ref|ZP_02824321.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC508] gi|191166943|ref|ZP_03028767.1| transcriptional regulator CsgD [Escherichia coli B7A] gi|193069453|ref|ZP_03050407.1| transcriptional regulator CsgD [Escherichia coli E110019] gi|194432391|ref|ZP_03064678.1| transcriptional regulator CsgD [Shigella dysenteriae 1012] gi|195935427|ref|ZP_03080809.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4024] gi|208809483|ref|ZP_03251820.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4206] gi|208815293|ref|ZP_03256472.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4045] gi|208822315|ref|ZP_03262634.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4042] gi|209396459|ref|YP_002269887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4115] gi|209918293|ref|YP_002292377.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SE11] gi|215486249|ref|YP_002328680.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O127:H6 str. E2348/69] gi|217328252|ref|ZP_03444334.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14588] gi|218553618|ref|YP_002386531.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI1] gi|218557921|ref|YP_002390834.1| DNA-binding transcriptional regulator CsgD [Escherichia coli S88] gi|218688993|ref|YP_002397205.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ED1a] gi|218694575|ref|YP_002402242.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 55989] gi|218704448|ref|YP_002411967.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UMN026] gi|227886606|ref|ZP_04004411.1| LuxR family protein [Escherichia coli 83972] gi|237706978|ref|ZP_04537459.1| transcriptional regulator for 2nd curli operon [Escherichia sp. 3_2_53FAA] gi|254792423|ref|YP_003077260.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14359] gi|256018703|ref|ZP_05432568.1| DNA-binding transcriptional regulator CsgD [Shigella sp. D9] gi|260854523|ref|YP_003228414.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|260867403|ref|YP_003233805.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|261227055|ref|ZP_05941336.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. FRIK2000] gi|261256289|ref|ZP_05948822.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O157:H7 str. FRIK966] gi|291282059|ref|YP_003498877.1| CsgD [Escherichia coli O55:H7 str. CB9615] gi|293404327|ref|ZP_06648321.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1412] gi|293433333|ref|ZP_06661761.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088] gi|298380106|ref|ZP_06989711.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1302] gi|300816738|ref|ZP_07096958.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300821183|ref|ZP_07101332.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300899554|ref|ZP_07117793.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300902427|ref|ZP_07120409.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300922561|ref|ZP_07138662.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300935178|ref|ZP_07150204.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300974342|ref|ZP_07172554.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|300982659|ref|ZP_07176243.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|301023209|ref|ZP_07187008.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|301051178|ref|ZP_07198008.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|301305026|ref|ZP_07211128.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|301328594|ref|ZP_07221655.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|306814112|ref|ZP_07448285.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101] gi|307310181|ref|ZP_07589831.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309794973|ref|ZP_07689393.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331652090|ref|ZP_08353109.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M718] gi|331657094|ref|ZP_08358056.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA206] gi|331662440|ref|ZP_08363363.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA143] gi|331667434|ref|ZP_08368298.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA271] gi|331672560|ref|ZP_08373349.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA280] gi|331676827|ref|ZP_08377523.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H591] gi|331682538|ref|ZP_08383157.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H299] gi|332279774|ref|ZP_08392187.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9] gi|12514569|gb|AAG55786.1|AE005314_14 putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. EDL933] gi|26107576|gb|AAN79775.1|AE016759_49 Probable csgAB operon transcriptional Regulatory protein [Escherichia coli CFT073] gi|13360877|dbj|BAB34840.1| transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. Sakai] gi|30040810|gb|AAP16541.1| probable csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|56383350|gb|AAN42657.2| probable csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|91071762|gb|ABE06643.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli UTI89] gi|110342808|gb|ABG69045.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli 536] gi|110614597|gb|ABF03264.1| Probable csgAB operon transcriptional Regulatory protein [Shigella flexneri 5 str. 8401] gi|115512353|gb|ABJ00428.1| probable csgAB operon transcriptional regulatory protein [Escherichia coli APEC O1] gi|157077679|gb|ABV17387.1| transcriptional regulator CsgD [Escherichia coli E24377A] gi|171986605|gb|ACB59284.1| CsgD [Escherichia coli] gi|171986613|gb|ACB59291.1| CsgD [Escherichia coli] gi|171986621|gb|ACB59298.1| CsgD [Escherichia coli] gi|171986629|gb|ACB59305.1| CsgD [Escherichia coli] gi|187770420|gb|EDU34264.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4196] gi|188018009|gb|EDU56131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4113] gi|188999071|gb|EDU68057.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4076] gi|189358200|gb|EDU76619.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4401] gi|189363208|gb|EDU81627.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4486] gi|189368715|gb|EDU87131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4501] gi|189378335|gb|EDU96751.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC508] gi|190903055|gb|EDV62780.1| transcriptional regulator CsgD [Escherichia coli B7A] gi|192957201|gb|EDV87650.1| transcriptional regulator CsgD [Escherichia coli E110019] gi|194419278|gb|EDX35360.1| transcriptional regulator CsgD [Shigella dysenteriae 1012] gi|208729284|gb|EDZ78885.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4206] gi|208731941|gb|EDZ80629.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4045] gi|208737800|gb|EDZ85483.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4042] gi|209157859|gb|ACI35292.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. EC4115] gi|209773728|gb|ACI85176.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773730|gb|ACI85177.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773732|gb|ACI85178.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773734|gb|ACI85179.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209773736|gb|ACI85180.1| transcriptional regulator for 2nd curli operon [Escherichia coli] gi|209911552|dbj|BAG76626.1| putative transcriptional regulator [Escherichia coli SE11] gi|215264321|emb|CAS08678.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli O127:H6 str. E2348/69] gi|217318679|gb|EEC27105.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str. TW14588] gi|218351307|emb|CAU97012.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli 55989] gi|218360386|emb|CAQ97938.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli IAI1] gi|218364690|emb|CAR02380.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli S88] gi|218426557|emb|CAR07385.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli ED1a] gi|218431545|emb|CAR12423.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli UMN026] gi|222032794|emb|CAP75533.1| csgAB operon transcriptional regulatory [Escherichia coli LF82] gi|226898188|gb|EEH84447.1| transcriptional regulator for 2nd curli operon [Escherichia sp. 3_2_53FAA] gi|227836810|gb|EEJ47276.1| LuxR family protein [Escherichia coli 83972] gi|254591823|gb|ACT71184.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli O157:H7 str. TW14359] gi|257753172|dbj|BAI24674.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O26:H11 str. 11368] gi|257763759|dbj|BAI35254.1| DNA-binding transcriptional activator CsgD in two-component regulatory system [Escherichia coli O111:H- str. 11128] gi|281178149|dbj|BAI54479.1| putative transcriptional regulator [Escherichia coli SE15] gi|281600449|gb|ADA73433.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2002017] gi|284920864|emb|CBG33927.1| probable csgab operon transcriptional regulator [Escherichia coli 042] gi|290761932|gb|ADD55893.1| CsgD [Escherichia coli O55:H7 str. CB9615] gi|291324152|gb|EFE63574.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088] gi|291428913|gb|EFF01938.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1412] gi|294494087|gb|ADE92843.1| transcriptional regulator CsgD [Escherichia coli IHE3034] gi|298279804|gb|EFI21312.1| DNA-binding transcriptional regulator CsgD [Escherichia coli FVEC1302] gi|300297199|gb|EFJ53584.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1] gi|300307124|gb|EFJ61644.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1] gi|300356825|gb|EFJ72695.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300397133|gb|EFJ80671.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|300405459|gb|EFJ88997.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300410585|gb|EFJ94123.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1] gi|300421107|gb|EFK04418.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1] gi|300459572|gb|EFK23065.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300526482|gb|EFK47551.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300530512|gb|EFK51574.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300839744|gb|EFK67504.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|300844986|gb|EFK72746.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1] gi|305852749|gb|EFM53197.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101] gi|306909899|gb|EFN40393.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|307553043|gb|ADN45818.1| csgAB operon transcriptional regulatory protein [Escherichia coli ABU 83972] gi|307627490|gb|ADN71794.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UM146] gi|308121277|gb|EFO58539.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|312945603|gb|ADR26430.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O83:H1 str. NRG 857C] gi|313650706|gb|EFS15107.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|315060319|gb|ADT74646.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli W] gi|315253837|gb|EFU33805.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|315287407|gb|EFU46818.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3] gi|315291086|gb|EFU50449.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1] gi|315296668|gb|EFU55963.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3] gi|320189720|gb|EFW64376.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. EC1212] gi|320200932|gb|EFW75516.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli EC4100B] gi|320637492|gb|EFX07292.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. G5101] gi|320643053|gb|EFX12254.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H- str. 493-89] gi|320648510|gb|EFX17165.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H- str. H 2687] gi|320653825|gb|EFX21899.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659305|gb|EFX26874.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7 str. USDA 5905] gi|320664439|gb|EFX31590.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O157:H7 str. LSU-61] gi|323175733|gb|EFZ61327.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 1180] gi|323190548|gb|EFZ75820.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli RN587/1] gi|323379120|gb|ADX51388.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323947348|gb|EGB43354.1| luxR family protein Bacterial regulatory protein [Escherichia coli H120] gi|323953272|gb|EGB49138.1| luxR family protein regulatory protein [Escherichia coli H252] gi|323958052|gb|EGB53762.1| luxR family protein regulatory protein [Escherichia coli H263] gi|323966982|gb|EGB62408.1| luxR family protein regulatory protein [Escherichia coli M863] gi|323976586|gb|EGB71674.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|324007878|gb|EGB77097.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2] gi|324013311|gb|EGB82530.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1] gi|324017459|gb|EGB86678.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|324117387|gb|EGC11294.1| luxR family protein regulatory protein [Escherichia coli E1167] gi|326339260|gb|EGD63074.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. 1125] gi|326344780|gb|EGD68528.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia coli O157:H7 str. 1044] gi|327253435|gb|EGE65073.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli STEC_7v] gi|331050368|gb|EGI22426.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli M718] gi|331055342|gb|EGI27351.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA206] gi|331060862|gb|EGI32826.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA143] gi|331065019|gb|EGI36914.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA271] gi|331070203|gb|EGI41569.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli TA280] gi|331075516|gb|EGI46814.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H591] gi|331080169|gb|EGI51348.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H299] gi|332088801|gb|EGI93913.1| putative csgAB operon transcriptional regulatory protein [Shigella boydii 5216-82] gi|332092876|gb|EGI97944.1| putative csgAB operon transcriptional regulatory protein [Shigella dysenteriae 155-74] gi|332102126|gb|EGJ05472.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9] gi|332758809|gb|EGJ89125.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 4343-70] gi|332759950|gb|EGJ90251.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri 2747-71] gi|332762241|gb|EGJ92509.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-671] gi|332767834|gb|EGJ98025.1| bacterial regulatory s, luxR family protein [Shigella flexneri 2930-71] gi|333005819|gb|EGK25336.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri VA-6] gi|333019711|gb|EGK38984.1| putative csgAB operon transcriptional regulatory protein [Shigella flexneri K-304] Length = 216 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|327481896|gb|AEA85206.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 836 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 8/162 (4%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 L + + + + H + + A + +L + + Sbjct: 672 AALREQIEQNLAAQRLGLACECRFSLAEALHVDGQAVEAEAEV---RLALGEAARQHLVK 728 Query: 144 LMLLFPKGRI-----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + + +L E + ++ L+ RE+ L I+ Sbjct: 729 PLYELAHRQPQWLARVLPAVKGESLRQRLLRYEREPETTQAATEETVLSNRELTVLRLIA 788 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +G ++ EIA L IS +TV + I K R+ A+A A Sbjct: 789 QGCSNQEIAEQLFISLHTVKTHARRINTKLGVARRTQAVAKA 830 >gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 215 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S D + +L+ RE E L S+G E+A L I+ TV +++S+ K K + Sbjct: 131 NSVDSASNELEQLSPREREVLLLSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNK 190 Query: 234 SGAIAYAVRNNIV 246 + A+ A++N I+ Sbjct: 191 TEALIIALKNGII 203 >gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 218 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 11/132 (8%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L L + + G+ L+P L + M Sbjct: 93 FRVLQAGAAGYILKSAPDLDLITAIRSVNQGMAYLYPSATKSLIEEF----------LQM 142 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K+ + D LT RE E L I++G ++ EIA L +S TV ++ A IM K +T Sbjct: 143 VKNGEEQAKYDI-LTDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRT 201 Query: 233 RSGAIAYAVRNN 244 R + YA++ Sbjct: 202 RPDLVRYAIKKG 213 >gi|31790496|emb|CAD56673.1| putative regulatory protein [Citrobacter freundii] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N T D R+ GL + + LA+Y +Y + + LT Sbjct: 105 NGVFYATEDEQRVVSGLQGVLRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 RE E L + G ++ EIA L IS NTV ++ ++ +K A K R+ A+++A Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] Length = 217 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +T RE+ L I+ G S EIA +GIS TV ++ +I K +RS A+A A+ Sbjct: 150 NASITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIE 209 Query: 243 NNIV 246 I+ Sbjct: 210 KGII 213 >gi|319953755|ref|YP_004165022.1| two component transcriptional regulator, luxr family [Cellulophaga algicola DSM 14237] gi|319422415|gb|ADV49524.1| two component transcriptional regulator, LuxR family [Cellulophaga algicola DSM 14237] Length = 214 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 7/204 (3%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104 + + ++ +L + Q +K SI S+D L+ + + E L + Sbjct: 14 FIDGLISILNEAPEFSVILTAKNGAQVEKYLSINSADNIHLLITDLTMPEMGGI--ELNK 71 Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162 + P TL ++ M ++ D V + LL II ++ + Sbjct: 72 IVKSKYPSLKTLVVSMHIDGMMIDKLIKNNVDGYVPKNAEKEELLTAIRSIIKGEKYFSP 131 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + AY MF++ + ++ LT RE E L I+E T+ EIA L +S++T+ +Y Sbjct: 132 EIKKAYTDAMFENKKM---EEISLTDREKEVLKLIAEENTTQEIADKLFLSKHTIESYRK 188 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++ K K +G +A++ ++ Sbjct: 189 NLISKLNVKNLAGLTKHALKMGLL 212 >gi|237730973|ref|ZP_04561454.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2] gi|226906512|gb|EEH92430.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 46/87 (52%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 ILR + LA+Y +Y + + LT RE E L + G ++ EIA L IS Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240 NTV ++ ++ +K A K R+ A+++A Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210 >gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 225 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 75/199 (37%), Gaps = 22/199 (11%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107 +Y+ + + + +E I+ D P ++ + + E D Y +++ + Sbjct: 37 DYLEFRGYEVNTAENGREAL--EILEQDIPDMIICDVMMPEMDGY-TFVEQVRQNERTGW 93 Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 LF + + + Y F+ + + + + W+ Sbjct: 94 IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTTRWKEHQ 147 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + D +LT E++ + +++ G + EIA L +S+ TV ++++++ Sbjct: 148 AKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203 Query: 225 MRKTATKTRSGAIAYAVRN 243 + KT R+ +A+ N Sbjct: 204 LGKTNLHNRTELARWAIEN 222 >gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 207 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L I+EG T+ EIA L IS TV+++ +++ K A K + I A+ + + Sbjct: 145 LTSREKEVLALIAEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGV 204 Query: 246 V 246 + Sbjct: 205 I 205 >gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y D + I + + + L I + ++ ++ + L+ R Sbjct: 99 YIKKDCDSSEIIDSIRETWRGNKFFCGQILETIRDASIDVNDI--DFESFSCEPITLSER 156 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E +T ISEG T+ IA L +S +T+N + +IM K K +G + YAV+ N+V Sbjct: 157 ETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAGIVIYAVKTNLV 213 >gi|297157797|gb|ADI07509.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 220 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 9/170 (5%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136 P +V + + D + P V T ++ + + + Sbjct: 49 PDVVVMDIRMPGMDGIEATRLITTGPGTTRVVVLTTFDDDDYVYGALRAGASGFLVKDMA 108 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + I + ++ +I L+ + A + + +T RE E LT Sbjct: 109 LDDILAAVRVVASGDALIAPSVTRR--LIKEFAAR-PATTPPPRAELGGITDREREVLTL 165 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++ EIA L IS T Y+ ++ K + R + A +V Sbjct: 166 VGSGLSNAEIADRLCISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLV 215 >gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510] gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510] Length = 229 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 14/171 (8%) Query: 83 PFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFD 136 P L+ + L + + + R V L + +T + Y + Sbjct: 62 PTVLITDLQLPDGHGTDLIREVRDRFPATEIMVISVLGDEDSVVTAIRAGASGYILKDSE 121 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195 + + L I +A Y + K L T RE + L Sbjct: 122 PVDMVEAVRGLIEGRSPISAS-------IARYIIRRVQDGSFKDRKPAPLLTPRETDILW 174 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G T ++IA LG+SR TV +YI +I RK +RS A+ A+ ++ Sbjct: 175 GIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLI 225 >gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 206 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 1/159 (0%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 L D ++ L + + + +G + + + Sbjct: 47 EAYNLVLLDYKMPGMRGLDSLREALAMKGGQRVALISGEATKDVAEQALALGAAGFVPKT 106 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEI 206 P ++ R +G A A M + + E LT RE+E L +SEGK++ EI Sbjct: 107 LPAKSLVNAVRFMAMGEQYAPIAFMTAAEEEEKHPLAERLTKRELEVLRGLSEGKSNKEI 166 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 A L ++ T+ ++ ++ RK R+ A A + Sbjct: 167 ARDLDLTEPTIKLHMKTLYRKLEVNNRTQAAIVARDEGL 205 >gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] Length = 224 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSD 204 L+ +++L + L Y + V + + +LT RE + + + G ++ Sbjct: 118 LIKGMSKVLLDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNI 177 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 178 EIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|256832826|ref|YP_003161553.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686357|gb|ACV09250.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 8/200 (4%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111 LT+ + S +V +Q + +V + P ++ + ++ ++ Q P Sbjct: 25 LTQILTMSDMHVVAEAHDGDQVIG-MVHAHHPAVILMDLRMARMSGIESITQVTALTNPP 83 Query: 112 ------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 F T + + + + + + + R R + + Sbjct: 84 GVIAMTSFDTESAILDAIDAGARGFVAKDSGPQELATAVRNVAAGEGALSR-RAARVVVE 142 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + LT RE E ++EG ++ EIA L + TV ++ S M Sbjct: 143 RLRAAETRPAQQFAQSLLASLTDREREITALVAEGFSTAEIATRLYLGEATVKTHLKSAM 202 Query: 226 RKTATKTRSGAIAYAVRNNI 245 KT T R+ A + + Sbjct: 203 NKTGTDNRTRLAVLAAKAGL 222 >gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 218 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 9/185 (4%) Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENIT 121 D ++ + V P ++ +A+ L+ + +++ + E + Sbjct: 34 DAADGKEAIAQVERLDPDVVLMDIAMPGLGGIEAALELHKLGKRSKVLILSQYEDREYVR 93 Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 L + +G ++L + + A QA + D + Sbjct: 94 RLLKAGVAGYVLKKSAGSELANAIRAVNRGGLVLDPEVARTAMQDAGQATPGGAADPYEA 153 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + L ++EG+++ E+A +LGIS T ++ +M K R+ + +A+ Sbjct: 154 ----LTDREKQVLKLVAEGRSNKEVAEVLGISVKTAMSHREHVMEKLQVHNRTELVRFAL 209 Query: 242 RNNIV 246 + ++ Sbjct: 210 KKGVI 214 >gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 211 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L S+G +S E+A L IS TV ++ASI K + ++ A+ A++ + Sbjct: 144 LSAREREVLVLASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGV 203 Query: 246 V 246 V Sbjct: 204 V 204 >gi|293189077|ref|ZP_06607804.1| nitrate/nitrite response regulator protein NarL [Actinomyces odontolyticus F0309] gi|292821991|gb|EFF80923.1| nitrate/nitrite response regulator protein NarL [Actinomyces odontolyticus F0309] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 9/156 (5%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 +E ++ L V + + Y + + + + + Sbjct: 68 AEVASTCRDIEGLHFLALSVSDAAEDVVQVIRAGARGYVTKSIATPDLVEAIGRVAAGDA 127 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210 LA + + F + +V + L+ RE E + I+ G T E+A L Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSITDTELDLLSAREQEVMRLIARGYTYKEVAHDL 180 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV +++S++RK R+ +A++ +IV Sbjct: 181 FISIKTVETHVSSVLRKLQLSNRNELTRWAMQRHIV 216 >gi|297197553|ref|ZP_06914950.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715575|gb|EDY59609.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 233 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + R L V + G +L P L L A S Sbjct: 108 GASGYVLKQIRGSDLVSAVRTVASGQSMLDPATTARLMRSLRADPAETPAMAPELAS--- 164 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L+ RE + L I +G T+ EI L +S TV N+I+ ++ K + R A Sbjct: 165 -------LSPRERDILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAV 217 Query: 239 YA 240 A Sbjct: 218 LA 219 >gi|146307690|ref|YP_001188155.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575891|gb|ABP85423.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 213 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 155 LRDRLWE-IGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVIL 210 LR L E I L+AA + ++ + L+ REVE L + G ++ +IA+ L Sbjct: 112 LRKELVETIRLVAAGKRHIPAEIAAELAEHIGQQCLSPREVEVLQAAALGYSNRDIALQL 171 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ +TV ++ IM K R+ A+A AV+ ++ Sbjct: 172 RITEDTVKGHMRLIMDKLGANNRTHAVAIAVQRGVL 207 >gi|116072236|ref|ZP_01469503.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116064758|gb|EAU70517.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 227 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGRE 190 + G++ + G+ D L I +A + K G + L+ RE Sbjct: 113 AIEANVDGIIFVHSIGQSADGDFLKSIRAIANGSSYYPKEVRTMAGYVKSIELAGLSDRE 172 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E L + +G ++ E+A +L +S T+ +++++++ K K R+ A+ A+R Sbjct: 173 SEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226 >gi|73748496|ref|YP_307735.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669277|ref|YP_001214095.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432544|ref|YP_003462417.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|73660212|emb|CAI82819.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270225|gb|ABQ17217.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] gi|288946264|gb|ADC73961.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 224 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L + G ++ +IA L +S T+ ++++I +K + +R+ AI Y ++ Sbjct: 157 PLTEREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRG 216 >gi|220926584|ref|YP_002501886.1| two component LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951191|gb|ACL61583.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 270 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE LT ++ G ++ IA L ++ TV ++ SI+RK R+ A +A +N Sbjct: 183 HLSERERLILTMLASGSSNKVIARRLDVTEATVKVHVKSILRKIRVSNRTQAAIWATKNG 242 Query: 245 IV 246 IV Sbjct: 243 IV 244 >gi|26988850|ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gi|24983655|gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] Length = 219 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 108 LFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 + HT P+ I + Y + L + R + + Sbjct: 79 VLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALGAVRHGERYLSP---AIAHTVI 135 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 K G+ LT R++E L I GK++ EIA LG+S TV + + IM+ Sbjct: 136 NQALRHTKQGKPSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMK 195 Query: 227 KTATKTRSGAIAYAVRNNIV 246 + +G + +AVR I+ Sbjct: 196 RLQIHDVAGLVLFAVREKII 215 >gi|312959040|ref|ZP_07773559.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311286810|gb|EFQ65372.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 909 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L I+EG ++ EI+ L IS +TV + + I K + R+ A+A A + Sbjct: 848 LSVRELAVLQLIAEGCSNQEISNRLFISLHTVKTHASHINSKLGVERRTQAVARAQELRL 907 Query: 246 V 246 + Sbjct: 908 I 908 >gi|237665880|ref|ZP_04525868.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658827|gb|EEP56379.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 227 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 69/174 (39%), Gaps = 6/174 (3%) Query: 78 VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 +S D P ++ + + + D + + ++ V T ++ + + Y Sbjct: 43 ISKDKPNVILMDIRMPQMDGVQCTKVIKESYPDIKIIVLTTFDDDEYIFDALKYGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + G+ + G ++ D ++ L + A V+ L E Sbjct: 103 LKGVSMKELIEGIHTVAGGGAMMNPDIATKVVRLFSRLAKGNLGIKVNSENVKSLGKTEW 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + + I G ++ EIA +L +S TV NY++ I+ K + R+ +AV N + Sbjct: 163 KVIVQIGRGLSNKEIAKVLFLSEGTVRNYLSQILNKLELRDRTQLAIWAVENGV 216 >gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] Length = 230 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 6/159 (3%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 R + + +V P ++ + +T D+ L + ++ G + Sbjct: 78 RAYSPNTVFLALSVSDSPQDVGSVIRAGAQGYVTKTISGDD----LISSIKQVHEGYAVF 133 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 PK + + A + +H + L+ RE E + I+ G T E+A Sbjct: 134 SPKLAGFVLSAFQSAP--SGGMAAGGANGPIHDDELDRLSNREQEVMRLIARGYTYKEVA 191 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV +++S++RK R+ +A IV Sbjct: 192 AELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRIV 230 >gi|325964186|ref|YP_004242092.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470273|gb|ADX73958.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 229 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 9/152 (5%) Query: 97 KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 +L L V + + Y + T A I + + + Sbjct: 85 GSAALLPTTRFLALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVYRVAGGDAVFSP 144 Query: 157 DRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 LA + + F D+ + +L+ RE+E + I+ G + E+A L IS Sbjct: 145 -------RLAGFVLDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISI 197 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++++++RK +R +A ++ Sbjct: 198 KTVETHVSAVLRKLQLSSRHELTKWAAERRLL 229 >gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis NIES-39] Length = 105 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 41/69 (59%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D + L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT+T R Sbjct: 2 SDSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVE 61 Query: 236 AIAYAVRNN 244 + ++++ Sbjct: 62 LVRWSLQWG 70 >gi|213693023|ref|YP_002323609.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524484|gb|ACJ53231.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459203|dbj|BAJ69824.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 231 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222 Query: 238 AYAVRNNIV 246 +A IV Sbjct: 223 RWAADRRIV 231 >gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006] Length = 247 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 161 EIGLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 L+ YQ N ++ K+ L+ RE E L W S GK+ EIA+ILGI TV Sbjct: 154 HEKLITLYQEINDTHQFNKKNQKEI-LSKRENEILYWASMGKSYQEIALILGIKLTTVKY 212 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ + ++K AI V ++ Sbjct: 213 HVGNAVKKLGVTNAKHAIRLGVELKLI 239 >gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] Length = 209 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCM-----ALSEKDKYYNVLQRPTELFCPVFHTL 116 ++V + + ++ D FD+V A+ E +Y + + Sbjct: 8 MIVDDHPLMRRGIRQLLELDSNFDVVTEANCGSDAIIEAARYQPDVILLDLNMKGMSGLD 67 Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM---- 172 G+D R LT AR + M+ +L+D EI L QA + Sbjct: 68 TLKALRNEGIDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAALGEKV 127 Query: 173 --------FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 S ELT RE++ L ++ G ++ ++A L IS TV +I ++ Sbjct: 128 FSDEVALYLSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 187 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK ++R A + N Sbjct: 188 LRKLNVRSRVAATIMFLENK 207 >gi|313499754|gb|ADR61120.1| LuxR family DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 219 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 108 LFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 + HT P+ I G + Y + L + R + + Sbjct: 79 VLILSMHTDPDLIMRALEGGAHGYLLKDTSANELEQALGAVRHGERYLSP---AIAHTVI 135 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + + LT R++E L I GK++ EIA LG+S TV + + IM+ Sbjct: 136 NQALRHTQQGKPSADERHNLTSRQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMK 195 Query: 227 KTATKTRSGAIAYAVRNNIV 246 + +G + +AVR I+ Sbjct: 196 RLQIHDVAGLVLFAVREKII 215 >gi|311896469|dbj|BAJ28877.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 170 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 4/156 (2%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L+ RP ++ + + L + + L Sbjct: 13 GLAATRAILRGTDRPPKILVVTTFEADDYVYEALRAGADGFLLKRSRPAEVVQAVRLAAT 72 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G +L A G LTGRE E L ++ G ++ EI L Sbjct: 73 GETLLFPAAIRRLAAARAGHAADGGAVARAG----LTGREGEVLRLMARGLSNAEIGAQL 128 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + TV ++++++ K + R+ A+ A + V Sbjct: 129 HLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESGFV 164 >gi|312198483|ref|YP_004018544.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229819|gb|ADP82674.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 1022 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G LT RE+E L ++ G ++ +IA L ISR T + ++++I+ K TR A A A Sbjct: 949 GPPLGLTARELEVLRLVAAGGSNPQIASALFISRKTASTHVSNILGKLGVATRGEAAAVA 1008 Query: 241 VRNNI 245 R ++ Sbjct: 1009 HRLHL 1013 >gi|306832609|ref|ZP_07465748.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304425217|gb|EFM28344.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 227 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 6/174 (3%) Query: 78 VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 + + P ++ + + + D V + + T ++ + + + Y Sbjct: 43 LPTSKPDVVLMDIRMPKMDGVLCTKAVKEHFPNTKVIILTTFDDDDFIYSALKYGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + ++ + ++ D ++ L + A + V +++ E Sbjct: 103 LKGTSMDELHDAVVTVNDGRAMLNPDIATKVFKLFSQMAQSNFAIQVDDALTTDISKMEW 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + I G ++ EIA L +S TV NY++SI+ K + R+ +AV+ + Sbjct: 163 RIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTGV 216 >gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 265 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 34/63 (53%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT REVECL W + GKT++EI +ILG+ R TV +I S K R + A + Sbjct: 199 ISLTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFKAAQL 258 Query: 244 NIV 246 + Sbjct: 259 GFL 261 >gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 27/187 (14%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133 P ++ + + + Y +L++ E PV + +T + Y S Sbjct: 59 PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117 Query: 134 TFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDVH 179 FD + + + + +L++ ++ EI + Q ++ Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNQANPENKIN 177 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 T RE L ++EG + EIA L S V Y++ + KT T +R+ + Y Sbjct: 178 LP---SFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRY 234 Query: 240 AVRNNIV 246 A+ N++V Sbjct: 235 ALENHLV 241 >gi|312138597|ref|YP_004005933.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311887936|emb|CBH47248.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 217 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 118 ENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 E++ P+G + +L + ++ L + F + ++ D G+ A + Sbjct: 91 EDVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV---DSTVRAGIEALARQCRRIVA 147 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + F L+GRE + L +++G ++ EIA L ISR TV ++ +I KT T++R Sbjct: 148 DQSERESFRLSGREHQILALVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSRVRV 207 Query: 237 IAYAVRNNIV 246 A I+ Sbjct: 208 AVRATELGIL 217 >gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 44/93 (47%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +++ R + + N+ + L RE+E L ++EG+++ EIA L ++ Sbjct: 109 VVQSRFPDFAYHNSEPHNISSPHQPVQQSLVTLNKRELEVLRLLAEGRSNQEIADTLIVA 168 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++T+ Y+ I K +R+ AI A + + Sbjct: 169 KSTIKWYLKQIYSKLNAHSRTQAIVCARQIGFL 201 >gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 194 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 165 LAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LA ++ ++ + LT RE E L ++ G ++ EIA LG+S +TV +++ Sbjct: 109 LARQVRDIVMHPEIDRLPHVDVPRLTPRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHL 168 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 A + K R+ A++ A ++ Sbjct: 169 ARLYSKLDAGDRTEAVSRARSIGLL 193 >gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 199 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + LT RE + LT ++EGKT+ EIA L +S TV NYI++I+ K R AIA Sbjct: 135 ENPLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIAR 191 >gi|293414338|ref|ZP_06656987.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185] gi|291434396|gb|EFF07369.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|302867924|ref|YP_003836561.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315505671|ref|YP_004084558.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570783|gb|ADL46985.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412290|gb|ADU10407.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G ++ E+A L +S TV ++A I+ K + R A+ A + Sbjct: 155 LTRRETEVLRLLAGGLSNAELAEALHLSEATVKTHVARILAKLRLRDRVQAVVVAYETGL 214 Query: 246 V 246 V Sbjct: 215 V 215 >gi|193064557|ref|ZP_03045637.1| transcriptional regulator CsgD [Escherichia coli E22] gi|192927809|gb|EDV82423.1| transcriptional regulator CsgD [Escherichia coli E22] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 218 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 GL+ + ++ D + LT RE E L ++++G ++ +IA L +S TV N++ Sbjct: 134 AGLVLGEYRRIAQTADSSQDRP-SLTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHV 192 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 + RK R YA+ + + Sbjct: 193 QATFRKLQVANRVELTRYAIEHGL 216 >gi|146302391|ref|YP_001196982.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156809|gb|ABQ07663.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 219 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 10/176 (5%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPA----GMDNRY 130 V D LV +++ +KD VL+ + P + + +++ Y Sbjct: 45 VIQDQADILVLDISMPQKDG-IEVLKEFNQKGLPCKVIILSSYDDLKIIKEVMKLGAKGY 103 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + I + +G+ D + E + + + N K + ++ L+ RE Sbjct: 104 LTKK-CAGENMIEAIEAVYEGQEYFSDAVRE-KIFSMFSQNNPKLNKNVYIENPILSPRE 161 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E +T I + EI+ L IS NTV + +IM+K K G + YA++NN++ Sbjct: 162 IEIVTLICLEYSGKEISEKLFISVNTVETHRKNIMKKLNIKNTIGLVKYALKNNLI 217 >gi|16129003|ref|NP_415558.1| DNA-binding transcriptional activator for csgBA [Escherichia coli str. K-12 substr. MG1655] gi|89107885|ref|AP_001665.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli str. K-12 substr. W3110] gi|170080692|ref|YP_001730012.1| DNA-binding transcriptional regulator of adhesion determinants [Escherichia coli str. K-12 substr. DH10B] gi|238900295|ref|YP_002926091.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BW2952] gi|256023262|ref|ZP_05437127.1| DNA-binding transcriptional regulator CsgD [Escherichia sp. 4_1_40B] gi|300950131|ref|ZP_07164076.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300954426|ref|ZP_07166878.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301644945|ref|ZP_07244913.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|307137675|ref|ZP_07497031.1| DNA-binding transcriptional regulator CsgD [Escherichia coli H736] gi|331641579|ref|ZP_08342714.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H736] gi|1706166|sp|P52106|CSGD_ECOLI RecName: Full=CsgBAC operon transcriptional regulatory protein gi|1147562|emb|CAA62280.1| putative regulatory protein [Escherichia coli K-12] gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator for csgBA [Escherichia coli str. K-12 substr. MG1655] gi|4062613|dbj|BAA35830.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli str. K12 substr. W3110] gi|169888527|gb|ACB02234.1| DNA-binding transcriptional regulator of adhesion determinants [Escherichia coli str. K-12 substr. DH10B] gi|238860897|gb|ACR62895.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli BW2952] gi|260449819|gb|ACX40241.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|300318576|gb|EFJ68360.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450478|gb|EFK14098.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301076735|gb|EFK91541.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|323942508|gb|EGB38675.1| luxR family protein regulatory protein [Escherichia coli E482] gi|331038377|gb|EGI10597.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli H736] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|158315520|ref|YP_001508028.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110925|gb|ABW13122.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 12/177 (6%) Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYC 131 P ++ + + D ++ L F + + Sbjct: 46 EHHPDVVLMDIRMPGTDGLAATAAICSDETLAATHVLILTTFEIDEYVTQALHVGASGFL 105 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGR 189 + + + ++ L+A + A + LT R Sbjct: 106 GKDVGTDELLTAIRTIAGGDALLSPAATR--ALIARFLATPEPTATARTNPAVLTTLTAR 163 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E + ++EG ++ +IA L IS T ++ M K + R+ + A ++ ++ Sbjct: 164 EREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLL 220 >gi|269796274|ref|YP_003315729.1| two component transcriptional regulator, LuxR family [Sanguibacter keddieii DSM 10542] gi|269098459|gb|ACZ22895.1| two component transcriptional regulator, LuxR family [Sanguibacter keddieii DSM 10542] Length = 234 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 39/103 (37%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P+ ++ R G + + + LT REVE L ++ G ++ Sbjct: 129 LLKDTPRAELVAGIREAARGQTVLTPSVATRLVSQVGSRADRLTPREVEVLRAVARGLSN 188 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L IS TV ++ K R+ A+ A ++ Sbjct: 189 AAVGHELFISETTVKTHLIRAFGKLGVNDRTHAVTVATDRGLL 231 >gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] Length = 239 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 19/184 (10%) Query: 72 QKLDSIVSSDW----PFDLVRCMALSEKDKYYNV--LQRPTELFCP---VFHTLPENITP 122 Q +D +V S PF + ++ + + L + ++ V H + Sbjct: 61 QHIDPVVISALRRVSPFLWDEKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAM 120 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + M + + R + ++L+ R I R + A + K Sbjct: 121 LSLMVDDRGLAEIERNRGVLQMLLIDAHERFINGQR-----QITAQRHCSNKEP-----I 170 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE E L W S GKT EIA+ILGI TV +I ++++K AI V Sbjct: 171 ENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVE 230 Query: 243 NNIV 246 ++ Sbjct: 231 LQLI 234 >gi|271966918|ref|YP_003341114.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510093|gb|ACZ88371.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 11/178 (6%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENITPPAGMDN 128 + S+ P ++ + + E D + L F + Sbjct: 42 LARSERPDVVLMDVRMPEMDGIEATRRICGSADTAGVRVLMLTTFDLDEYVYAALRAGAS 101 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + + + ++ ++ L+A + A + G+ +TG Sbjct: 102 GFLLKDTPPGELLAAIRVVAAGEGLLAPTVTRR--LIAEF-ARRPEPSQPLAGELGGVTG 158 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE + L I+ G ++ EIA L +S TV ++ ++ K + R+ + A +V Sbjct: 159 RERDVLALIARGLSNTEIAGHLRLSLATVKTHVGRLLSKLGARDRAQLVILAYETGLV 216 >gi|226306620|ref|YP_002766580.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229493687|ref|ZP_04387472.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226185737|dbj|BAH33841.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229319648|gb|EEN85484.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 219 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 5/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +V + +E+ + R + F + + + Sbjct: 50 DVVLMDVRMPIVDGVKATEQILASGIESRVLVMTT--FDLDEHALGALRAGASGFLLKDT 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + ++ LL+ + + D LT RE E L Sbjct: 108 PPEDLVSAIRSVAAGDAVVSPKVTRR--LLSRFIVDGPAPRRDPVVLDV-LTEREREVLG 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G ++ EIA L +S +T+ +++ I+ K + R A+ A +V Sbjct: 165 HVATGLSNIEIAQQLYLSESTIKSHVGRILTKLDLRDRVQAVVLAYETGLV 215 >gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 212 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 33/66 (50%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 K L+ RE L ++EGK+S E+A IL IS TV + +I K + + YA Sbjct: 146 SKPNPLSRREEAILKLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKYA 205 Query: 241 VRNNIV 246 V IV Sbjct: 206 VEKGIV 211 >gi|303246118|ref|ZP_07332399.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492514|gb|EFL52385.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 227 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 6/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +V + P +V + L + D + +P + HT + + Sbjct: 44 ELVRTQSPDIVVLDIGLPDADGIEVIRQLRAMSQPPRILVVSMHTRLDLVAESLRQGALG 103 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L + + +G L + LL + +S V D LT RE Sbjct: 104 YVLKGSAPASLVHALDAVSRGDRYLDGAIVPQVLLKLDEYAERRSRPVDPAYDT-LTRRE 162 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L ++EG+ IA L ISR TV N+ ++I K + + + YAVR I+ Sbjct: 163 QQILRLLAEGRGVATIAAELFISRKTVENHRSNIFGKLSFSNMAELVHYAVRMGII 218 >gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 210 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 77/199 (38%), Gaps = 22/199 (11%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107 +Y+G + ++ + + ++ D P ++ + + E D Y +++ + Sbjct: 22 DYLGFRGYDVLTAENG--RTALGVLEQDIPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 78 Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 LF + + + Y F+ + + + + W+ Sbjct: 79 VPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTSRWKEH- 131 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 V + D +LT E++ + +++ G + EIA L +S+ TV ++++++ Sbjct: 132 -QTKVGEPGSRIQVPF--DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 188 Query: 225 MRKTATKTRSGAIAYAVRN 243 + KT R+ +A+ N Sbjct: 189 LGKTNLHNRTELARWAIEN 207 >gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 242 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 21/184 (11%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITP------PAGMDNRYCSL 133 P ++ + + D Y + + PV + +T AG+D+ Y Sbjct: 59 PDVIISDVMMPRCDGYGLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDD-YMPK 117 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD--- 183 FD + + + + +L + ++G +A +M D H + Sbjct: 118 PFDPDELVARVKNVVQRQERLLTEAARFANADVGQMAKQITEIKSMLSHGDKHHSRKDDS 177 Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 178 IPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237 Query: 243 NNIV 246 N++V Sbjct: 238 NHLV 241 >gi|87118413|ref|ZP_01074312.1| putative two component system response regulator [Marinomonas sp. MED121] gi|86166047|gb|EAQ67313.1| putative two component system response regulator [Marinomonas sp. MED121] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 10/171 (5%) Query: 83 PFDLVRCMALSEKDKYY-------NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 P ++ + + E D ++ + + F + + Sbjct: 49 PDLILMDIRMPEMDGLSATSAILGDLNIQTRIVILSTFDLDEYIYRALREGASGFILKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ++ G ++ + L+ A+ A + S+ G LT RE E L Sbjct: 109 PPDELVAAVHVVAQGGALLTPSITKK--LIGAF-AELKPSHTNVTGHIDRLTTREKEILK 165 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G + EIA L I +TV +++S++ K + R+ A+ +A N ++ Sbjct: 166 NLALGFNNSEIASRLFIGESTVKTHVSSLLSKLELRDRAQAVIFAYENGVI 216 >gi|307332179|ref|ZP_07611263.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882168|gb|EFN13270.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 5/174 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D +A + L + F + + + Sbjct: 50 DVVLMDIRMPGTDGLAATRMITEDPRLADVRVVMLTTFEVDEYVVDSLRAGASGFLGKGA 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVE 192 + + + + ++ + GL+A + A S D + LT RE E Sbjct: 110 EPDELLAAIRIAAAGEALLSP--VATKGLIARFLAQGDGSGDEGAYDAARLDALTVRERE 167 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G ++DEIA L +S TV ++ M K + R+ + A +V Sbjct: 168 VLVQVGGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGLV 221 >gi|239942450|ref|ZP_04694387.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988915|ref|ZP_04709579.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445905|ref|ZP_06585295.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348852|gb|EFE75756.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 221 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 11/180 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129 +V+ P ++ + + D + R L F + Sbjct: 41 HLVARHHPDVVLMDIRMPGLDGIEATRRIIASGARTRILIVTTFDLDEYAYDGLRAGASG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---L 186 + + G+ + ++ LL AY ++ D L Sbjct: 101 FLVKDALPEELLAGIRAVAAGDAVVAPTLTRR--LLDAYVHHLPVVPGARATSDPRITAL 158 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E LT I +G ++ EIA L ++ +TV ++ I+ KT + R A+ A +V Sbjct: 159 TEREREILTVIGQGWSNTEIAARLHLAESTVKTHVTRILAKTGARDRVQAVILAYDTRLV 218 >gi|218700457|ref|YP_002408086.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI39] gi|218370443|emb|CAR18250.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli IAI39] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58] gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58] Length = 208 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 40/92 (43%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 D L + + + H LT REVECL W + GKT++EI +ILG+ R Sbjct: 113 AADALAVLARAFVQSYSKVTARARHDLASISLTKREVECLRWAAAGKTNEEIGIILGLQR 172 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +I S K R + A + + Sbjct: 173 TTVRFHIRSASVKLDAVNRDQTMFKAAQLGFL 204 >gi|21225571|ref|NP_631350.1| LuxR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|8347028|emb|CAB93733.1| putative LuxR-family regulator [Streptomyces coelicolor A3(2)] Length = 988 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G ++ I L IS T + ++++I+ K +R+ A+A A R + Sbjct: 920 LTAREQDVLRLLALGHSNRRIGEELFISAKTASVHVSNILAKLNAASRTEAVAVAHRQGL 979 Query: 246 V 246 V Sbjct: 980 V 980 >gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2] gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] Length = 224 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K ++ Sbjct: 153 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 212 >gi|325069082|ref|ZP_08127755.1| two-component system regulator [Actinomyces oris K20] Length = 243 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + VL L +F + + Sbjct: 70 DVVLMDIQMPGLTGIEATRRICADPVLAATRVLILTMFEIDDYVLGALRAGACGFLLKDA 129 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + + ++ L + A+ S G+ LT R+ E L Sbjct: 130 DPQSLVDAVRTVHEGQSLLSPQVLARLVARMPRTASTGTSRSTWTGEVEALTPRQREVLL 189 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ EI V LGI+R T ++I +++ + + R+ + A ++ Sbjct: 190 LIARGLSNSEIEVELGITRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240 >gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4] gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus pseudofirmus OF4] Length = 74 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 36/69 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +G LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ Sbjct: 4 AEFGPKPLLTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQAV 63 Query: 238 AYAVRNNIV 246 +R + Sbjct: 64 IELIRLGEI 72 >gi|237801455|ref|ZP_04589916.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024314|gb|EGI04371.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 77 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L W +EGKT+ IA+IL + T++ +IAS ++K ++ A A + Sbjct: 16 NLTQREIEVLKWSAEGKTAGAIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVRAAMSG 75 >gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L Y+ D +LT RE E L ++++G ++ +IA L +S TV N++ + Sbjct: 140 VLGEYRRMSSAPADEQGPAVPKLTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQA 199 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 +RK R YA+ + Sbjct: 200 TLRKLQLANRVELTRYAIEQGL 221 >gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 87 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 40/62 (64%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +L+ RE++ + ++ G ++EI+ L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 9 NHQLSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQ 68 Query: 243 NN 244 Sbjct: 69 WG 70 >gi|118591588|ref|ZP_01548985.1| probable transcriptional regulator protein, LuxR family protein [Stappia aggregata IAM 12614] gi|118435916|gb|EAV42560.1| probable transcriptional regulator protein, LuxR family protein [Stappia aggregata IAM 12614] Length = 239 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Query: 143 GLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + L+ G + D + +G AA + K + + +LT RE E L IS Sbjct: 126 AIRLMLNGGHYLPADAIKYMGFERPAGAAPALQLRKPHGRTKNQFSKLTKRETEVLCLIS 185 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 EG + IA L +S +T+ +I I+ K R+ A A Sbjct: 186 EGYQNKNIANKLSLSEHTIKLHIHHIISKLGVSNRTEAAA 225 >gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 215 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E LT+I++G + EIA +L +S +T+ ++ SI K +R+ A A+R Sbjct: 151 VPLTAREEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRR 210 Query: 244 NIV 246 ++ Sbjct: 211 GLI 213 >gi|239939391|ref|ZP_04691328.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 325 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 14/238 (5%) Query: 17 EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76 R + D++ R + S S + V + ++ Sbjct: 88 PGRDRSHARASRGDDVIRRNSRPTTSSSSGRGFPPPC--WTRSPDIEVAGEAADGEEAVR 145 Query: 77 IVSSDWPFDLVRCMALSEKDKYY--------NVLQRPTELFCPVFHTLPENITPPAGMDN 128 +V P ++ + + D L + F + Sbjct: 146 LVRELRPDIVLMDIRMPRLDGLAATRRITGDPELNDVKVVMLTTFELDEYVFEALRNGAS 205 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + + + + + ++ L+A + A + LT Sbjct: 206 GFLVKDTEPEELLRAVRAVVGGDALLSPGVTRR--LIAEFAARSKEP--TAAASLALLTE 261 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE E + + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 262 REREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 319 >gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 7/171 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ + +E+ + P + F + Sbjct: 54 DVVLMDVRMPLIDGIRATERILADPG-EAPRIVVVTTFENDSYVYDALRAGAAGFLLKRT 112 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D + + L+ ++ + LA A + + LTGRE E L Sbjct: 113 DADTLVGAVRLVARSDTLLFPAAVRT---LATEHARTSPAPPAWVAR---LTGRESEVLR 166 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ G T+ EIA + + TV ++AS++ KT + R+ A+ A + Sbjct: 167 HVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAAYEAGFL 217 >gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 231 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H + L+ RE E + I+ G T E+A L IS TV +++S++RK R+ Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222 Query: 238 AYAVRNNIV 246 +A IV Sbjct: 223 RWAADRRIV 231 >gi|21241668|ref|NP_641250.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107032|gb|AAM35786.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 235 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%) Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217 LL A A K K + L+ RE + L+ + G T+ +A LGIS TV Sbjct: 146 LLPAMVAEPAKPVATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ I++K K R+ A YAV++ + Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|15596957|ref|NP_250451.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9947738|gb|AAG05149.1|AE004601_14 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 907 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K+R+ A+ ++ Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 236 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 23/188 (12%) Query: 80 SDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHT-----LPENITPPAGMDNRYC 131 + P +V + + E D + P P L + I + + Y Sbjct: 43 KNPPDLVVSDVLMPEMDGLEFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRD--RLWE--IGLLAAYQANMFKSYDVHWG------ 181 + + + L + I + RL + + + AN + Sbjct: 103 TKPVAPRELEAKIEALLERSHRIHAEIVRLMQQATAIAPGHLANQLSTSASAENSKTLAQ 162 Query: 182 -----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 K LT E + +G T+ EI+ L IS TV +++SI+ K RS Sbjct: 163 VGAKPKPLPLTPAEERVFWQVIQGLTNKEISDRLFISPRTVQTHLSSILHKLKLHNRSQL 222 Query: 237 IAYAVRNN 244 + +A Sbjct: 223 VRFAYEQG 230 >gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] Length = 245 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 L++ Y+ + + + RE E L W S GKT EIA+ILGI TV +I Sbjct: 157 KLISLYREMSQNKDEKIYNDKEIFSHRENEILYWASMGKTYQEIALILGIKTGTVKFHIG 216 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++++K AI + ++ Sbjct: 217 NVVKKLGVLNAKHAIRLGIELQLI 240 >gi|58425447|gb|AAW74484.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1005 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 11/195 (5%) Query: 58 ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 A F L RW + ++V + L+ + ++ R P Sbjct: 802 AMGFALARWHRLAGRSSAALVILGQ----IEQACLANDNAWHLARTRARIALVLQQRGEP 857 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMF 173 P + +LT I + R + + +G L Sbjct: 858 LAALPYLYSALEHVALTQSWQSIVELGLPAKAMLRSLRQHDPHTVGGSTRALTIQALLER 917 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 918 LSDDDDPAGDI-FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSR 976 Query: 234 SGAI--AYAVRNNIV 246 A+ A AV+ ++ Sbjct: 977 ESALAQAQAVQRGLL 991 >gi|28901302|ref|NP_800957.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153836071|ref|ZP_01988738.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ3810] gi|260362859|ref|ZP_05775728.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus K5030] gi|260880147|ref|ZP_05892502.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AN-5034] gi|260895264|ref|ZP_05903760.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus Peru-466] gi|260900616|ref|ZP_05909011.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ4037] gi|28809815|dbj|BAC62790.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750825|gb|EDM61570.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ3810] gi|308085647|gb|EFO35342.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus Peru-466] gi|308091763|gb|EFO41458.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AN-5034] gi|308107093|gb|EFO44633.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ4037] gi|308112345|gb|EFO49885.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus K5030] Length = 223 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSD 204 L +L+ +W A + + K+ LT RE + +T++S G ++ Sbjct: 116 LQTGIDKVLQGDMWFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQ 175 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L +S NTV ++ +I +K K R A+ +A N Sbjct: 176 QIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214 >gi|322434206|ref|YP_004216418.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321161933|gb|ADW67638.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 208 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE+ L I G+ + +IA L IS TV ++ +++ K R+ A A++ Sbjct: 144 QLTARELSVLERIVAGRANKDIAADLFISEATVKTHVNNLLSKLGVADRTQAATIALQRG 203 Query: 245 IV 246 V Sbjct: 204 FV 205 >gi|312195736|ref|YP_004015797.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227072|gb|ADP79927.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 216 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 15/148 (10%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + + + + L Sbjct: 75 RFLVLSVSDAAEDVIALIRAGARGYVTKTISADELADAVERVAGGDVVFSP-------RL 127 Query: 166 AAYQANMFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 A + + F+ +LT RE E L ++ G EIA L IS TV Sbjct: 128 AGFVLDAFRDASNAPPAAAAAPDADFDQLTPREREVLRLLARGYAYKEIAAELFISVKTV 187 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 + ++++RK +R +A I Sbjct: 188 ETHASNVLRKLRLSSRHQLTRWAADRRI 215 >gi|258650856|ref|YP_003200012.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554081|gb|ACV77023.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 228 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A+ + + LT RE E L I+ G ++ EI+ L + T ++ I K Sbjct: 142 ASHTPADLPGPSELQALTAREREVLVLIAHGLSNAEISDHLVVGEGTTKTHVNRIFNKLG 201 Query: 230 TKTRSGAIAYAVRNNIV 246 + R+ A+A A ++ ++ Sbjct: 202 LRDRAQAVAMAYKSGLL 218 >gi|28975412|gb|AAO61802.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus] gi|328469240|gb|EGF40186.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 223 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSD 204 L +L+ +W A + + K+ LT RE + +T++S G ++ Sbjct: 116 LQTGIDKVLQGDMWFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQ 175 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +IA L +S NTV ++ +I +K K R A+ +A N Sbjct: 176 QIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214 >gi|107101191|ref|ZP_01365109.1| hypothetical protein PaerPA_01002223 [Pseudomonas aeruginosa PACS2] gi|218892288|ref|YP_002441155.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234855|ref|ZP_04928178.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719] gi|313110449|ref|ZP_07796334.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|126166786|gb|EAZ52297.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719] gi|218772514|emb|CAW28296.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310882836|gb|EFQ41430.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 907 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K+R+ A+ ++ Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli 1180] Length = 123 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + D +LT RE E L I++GKT+ EIA L +SR T+ + +IM+K + I Sbjct: 53 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKKLDVYSGIELI 112 Query: 238 AYAVRNNI 245 A+R + Sbjct: 113 KTALRMGV 120 >gi|320106469|ref|YP_004182059.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924990|gb|ADV82065.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 210 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L + GK++ EIA L I TV +++ I+ + + R+ A+ ++ Sbjct: 147 NLSQREQEVLQLLFAGKSNREIAEELQIKETTVKTHVSVILMRLNVEDRTQAVVEGLKRG 206 Query: 245 IV 246 +V Sbjct: 207 LV 208 >gi|300782719|ref|YP_003763010.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792233|gb|ADJ42608.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + ++ + G + RL G + Sbjct: 89 VFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELVRAVVRVS-DGDAVFSPRL--AGFV 145 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ S ++ + LT RE + L ++ G EIA L IS TV +++S++ Sbjct: 146 LDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVL 205 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RKT R +A +V Sbjct: 206 RKTQLSNRYELSRWASDRRLV 226 >gi|229588468|ref|YP_002870587.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360334|emb|CAY47191.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 909 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A + Sbjct: 848 LSARELAVLKLIAQGCSNQEISNQLFISLHTVKTHASHINSKLGVERRTQAVARAKAMGL 907 Query: 246 V 246 + Sbjct: 908 L 908 >gi|226364089|ref|YP_002781871.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242578|dbj|BAH52926.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 394 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 AA +++ D ELT RE E ++ GK++ EIA L IS TV +++ I+ Sbjct: 306 AASLSSVPLPSDCRAPGLEELTMREREVFQLLAAGKSNTEIADELVISVFTVKSHVKKIL 365 Query: 226 RKTATKTRSGAI 237 RK RS AI Sbjct: 366 RKLGAMNRSEAI 377 >gi|297197789|ref|ZP_06915186.1| two component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716622|gb|EDY60656.1| two component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 IV D L+ +A + + L+ + F + + Sbjct: 49 DIVLMDIRMPLLDGLAATRRITEDTALKEVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + A + G LT RE E + Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAARSKEP--EAEGALAGLTEREREVMA 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|148977874|ref|ZP_01814429.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145962943|gb|EDK28214.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 203 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 140 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 199 Query: 243 N 243 N Sbjct: 200 N 200 >gi|116049710|ref|YP_791485.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584931|gb|ABJ10946.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 907 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K+R+ A+ ++ Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|284042733|ref|YP_003393073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946954|gb|ADB49698.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L D L + + G L+ P+ L R E+ A Sbjct: 93 VFGALRAGAAGFLLKDAPPQVLIDAIRSVGAGHGLIAPEVTRRLIARFAEVSPAAERATE 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + EL+ RE E L I+ G+++ EIA L + +T+ ++++ ++ K Sbjct: 153 LE-----------ELSPREHEVLLQIARGRSNAEIAAALVVEESTIKSHVSRLLSKLGCS 201 Query: 232 TRSGAIAYAVRNNIV 246 +R A+ A +V Sbjct: 202 SRVQAVILAYEVGLV 216 >gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 224 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 2/161 (1%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L + K L L ++ L Y R+ I M Sbjct: 60 LPDMSGIEATRKIIQALPSVKILMLSMYQNLEYATDAFKAGARGYIVKEATSDRL-IEAM 118 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 +G L +L ++ + G L+ RE + + ++EG +S Sbjct: 119 DALSQGEHFLDGQLSGDMVIRHLCGQGKEGSVQDQGYAL-LSPREQQVMRLVAEGGSSRS 177 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S TV N+ ++M+K +R + YA R ++ Sbjct: 178 IAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGLI 218 >gi|225020543|ref|ZP_03709735.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii ATCC 33806] gi|305679908|ref|ZP_07402718.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224946673|gb|EEG27882.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii ATCC 33806] gi|305660528|gb|EFM50025.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 232 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 30/159 (18%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P L V + I+ Y + + + + ++ + Sbjct: 75 PKFLALSVSDAAEDVISVIRSGARGYVTKSISGPELVDAIARVYDGDAVFSP-------R 127 Query: 165 LAAYQANMFKSYDVHWGKDF-----------------------ELTGREVECLTWISEGK 201 LA + + F D G LT RE+E L ++ G Sbjct: 128 LAGFVLDAFARPDARAGVGVVDAPERDKAVEQGHPPIDDPIVDALTRRELEVLRLLARGY 187 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T EIA L IS TV + ++I+RKT R +A Sbjct: 188 TYKEIAGQLFISIKTVETHASNILRKTQQSNRHALTRWA 226 >gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. NATL2A] Length = 242 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 23/185 (12%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITP------PAGMDNRYCSL 133 P ++ + + D Y + + PV + +T AG+D+ Y Sbjct: 59 PDVIISDVMMPRCDGYGLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDD-YMPK 117 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDF----- 184 FD + + + + +L + ++G +A Q KS H K+ Sbjct: 118 PFDPDELVARVKNVVQRQERLLTEAARFANADVGQMAK-QITEIKSMLSHGDKNHSRKDD 176 Query: 185 ---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 177 SIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 Query: 242 RNNIV 246 N++V Sbjct: 237 ENHLV 241 >gi|21224729|ref|NP_630508.1| two-component system regulatory protein [Streptomyces coelicolor A3(2)] gi|256784115|ref|ZP_05522546.1| two-component system regulatory protein [Streptomyces lividans TK24] gi|289767994|ref|ZP_06527372.1| two-component system response regulator [Streptomyces lividans TK24] gi|21902164|gb|AAM78436.1|AF425994_2 putative two-component regulator [Streptomyces coelicolor A3(2)] gi|3127843|emb|CAA18909.1| putative two-component system regulatory protein [Streptomyces coelicolor A3(2)] gi|289698193|gb|EFD65622.1| two-component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 + D ++ + + + L + + + + Sbjct: 52 DVALVDVQMPVMSGIEATRRIAADPALAAVRVVILTNYGLDEYVFEALRAGASGFLLKDT 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + ++ ++ L+ + A LT RE E Sbjct: 112 EPADLLQAIDVVAHGEALLSPSVTR--TLIGEFVAR--PPDRSTAPGLDALTRREREVTA 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA + IS T +I+ M K + R+ + +A + +V Sbjct: 168 LAARGLSNEEIAAHMVISPLTAKTHISRAMTKLGARDRAQLVVFAYESGLV 218 >gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas haloplanktis TAC125] Length = 218 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 8/162 (4%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + S KD + + ++ L L P + S V +L Sbjct: 51 IETSSKDAWGKLKEQLVNLRIKCDIVLFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110 Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 R++L D+LW + + + + + +LT RE ++ +S G Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGS 170 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + EIA L IS +TV ++ S RKT + R +++A ++ Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQH 212 >gi|254240102|ref|ZP_04933424.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192] gi|126193480|gb|EAZ57543.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192] Length = 907 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K+R+ A+ ++ Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|312196703|ref|YP_004016764.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228039|gb|ADP80894.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 225 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + +L V +R G LL P + L+ A Sbjct: 95 VYGALRAGASGFLLKGMEPTALVHAVHLVRDGGALLAPSATRL---------LIDAQAHA 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + +T RE E L ++EG + +IA L IS TV ++++S++ K Sbjct: 146 PARRQETSMALAGNVTEREREVLVLVAEGLANADIADRLSISPLTVKSHLSSLLAKHNLA 205 Query: 232 TRSGAIAYAVRNNIV 246 TR + A + +V Sbjct: 206 TRVQLVVLAYESGLV 220 >gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces albus J1074] Length = 211 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L ++EG ++ I+ L +S+ TV +++ I K +R+ A+A A+ + Sbjct: 149 LSRRETEVLGLVAEGMSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGL 208 Query: 246 V 246 + Sbjct: 209 I 209 >gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 260 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQAN----MFKSYDVHWGKDF 184 + + F + R+ L + GLLA +F S + GK Sbjct: 132 PVHMPRGDYATVTGIRFGANKDFERNALRYIADFGLLAHVFHETAYALFDSSERSVGK-M 190 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE ECL +EG ++ EI+ I+ S TV ++ S +K K R+ A+ A Sbjct: 191 RLTERERECLRHSAEGLSAKEISRIIDRSVPTVVMHLNSAAKKLGAKNRTQAVVRATHYR 250 Query: 245 IV 246 ++ Sbjct: 251 LL 252 >gi|218513582|ref|ZP_03510422.1| LuxR family transcriptional regulator [Rhizobium etli 8C-3] Length = 65 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE E + W++ GKT+ EI IL +S TVN +IA+ K + +A A+RN I+ Sbjct: 5 TPREREIIGWMAAGKTAAEIGAILAVSPITVNTHIANAKAKLGVFKETALVAEALRNGII 64 >gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv. tabaci] Length = 232 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 21/187 (11%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 44 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 103 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 104 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 163 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 164 TRAPHELFPQPTQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 223 Query: 231 KTRSGAI 237 +T A+ Sbjct: 224 RTAKQAV 230 >gi|90994534|ref|YP_537024.1| hypothetical chloroplast protein 29 [Porphyra yezoensis] gi|122244619|sp|Q1XDE4|YCF29_PORYE RecName: Full=Probable transcriptional regulator ycf29 gi|90819098|dbj|BAE92467.1| unnamed protein product [Porphyra yezoensis] Length = 222 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 12/164 (7%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 ++ SD LV L K K L + +F + I Y S F Sbjct: 48 DLIISDIMMPLVNGYELLAKLKKNKALSKIPVIFLTAKGMTKDRIKGYDMGCYGYLSKPF 107 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 D LL +I RD L E L + + LT RE L Sbjct: 108 DPNE------LLSIINNLIARDVLKEASL------QNSATSNQQLNHKIRLTPREKSILD 155 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + +G T+ EI+ IL S V Y++ ++ KT K R+ + Y Sbjct: 156 LVVDGLTNKEISTILNTSVRNVEKYVSRLLHKTNMKNRTLLVKY 199 >gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli EPECa14] Length = 123 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D +LT E E L I++GKT+ EIA L +SR TV + +IM+K + Sbjct: 49 EKISSRYSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 108 Query: 234 SGAIAYAVRNNI 245 I A+R + Sbjct: 109 IELIKTALRMGV 120 >gi|288920973|ref|ZP_06415266.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347607|gb|EFC81891.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 7/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + G D L V + G LL P L + I A A Sbjct: 93 VARALRVGASGFLGKDVEADGLLAAVRTVAAGEALLSPAATRALIAQFVAIPEPTATAAA 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + D LT RE E + +EG ++ EIA L IS T ++ M K + Sbjct: 153 SHAALDT-------LTAREREVMILAAEGHSNQEIAAKLVISPLTARTHVHRAMAKLDAR 205 Query: 232 TRSGAIAYAVRNNIV 246 R+ + A + ++ Sbjct: 206 DRAQLVVIAYQTGLL 220 >gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] Length = 218 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203 LL + + D ++ + ++ + LT RE+E L +++ G ++ Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L ++ +TV ++ +++RK +R A YAV++ + Sbjct: 171 KVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQHKV 212 >gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator [Pseudomonas sp. M18] Length = 215 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K ++ Sbjct: 144 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 203 >gi|148548821|ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gi|148512879|gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 219 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 108 LFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 + HT P+ I + Y + L + R + + Sbjct: 79 VLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALGAVRHGERYLSP---AIAHTVI 135 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 K G+ LT R++E L I GK++ EIA LG+S TV + + IM+ Sbjct: 136 NQALRHTKQGKQSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMK 195 Query: 227 KTATKTRSGAIAYAVRNNIV 246 + +G + +AVR I+ Sbjct: 196 RLQIHDVAGLVLFAVREKII 215 >gi|152988849|ref|YP_001348901.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964007|gb|ABR86032.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 907 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K+R+ A+ ++ Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904 >gi|324997109|ref|ZP_08118221.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 126 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LTGRE+E L ++ G T+ EIA L I+ TV ++A I K R+ A +R ++ Sbjct: 55 LTGRELEVLQVLAAGATNKEIAARLFIAPKTVGAHLARIFAKLGVTNRTQAAGV-LRRHL 113 >gi|258592851|emb|CBE69160.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 160 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 36/69 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V LT RE + L I++G + +IA L S T+ N+ A I +K + R+G + Sbjct: 90 VDGAPGDRLTPREQQILRLIAQGFSDKQIARTLQRSVRTIENHAARIRQKLHIENRTGLV 149 Query: 238 AYAVRNNIV 246 +A RN ++ Sbjct: 150 RFAFRNRLI 158 >gi|254430257|ref|ZP_05043960.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197624710|gb|EDY37269.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 291 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L ++ G ++ EIA L +S +TV ++ +++RK + R+ A V Sbjct: 225 PLTPRELEVLAQVARGCSNVEIAGSLYLSVDTVKTHLQNVLRKLPARDRAHAAVLGVCWG 284 Query: 245 IV 246 ++ Sbjct: 285 LI 286 >gi|330975157|gb|EGH75223.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 95 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 40/68 (58%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 ++F +T RE E W + GKT +EIAVIL IS+ TV+ +I++++ K +T+ A Sbjct: 28 ESDENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 87 Query: 239 YAVRNNIV 246 + I+ Sbjct: 88 QLTKMGIL 95 >gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 211 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Q ++F++ +LT RE E L I+EGKT+ EI L IS +TV + ++M+K Sbjct: 133 VQQSLFEAALHDPMNLPKLTRREQEVLRCIAEGKTTVEIGETLFISPHTVETHRRNLMQK 192 Query: 228 TATKTRSGAIAYAVRNNIV 246 + I A + ++ Sbjct: 193 FEVSNAAALIRVATQYQLI 211 >gi|229174002|ref|ZP_04301538.1| Response regulator [Bacillus cereus MM3] gi|228609334|gb|EEK66620.1| Response regulator [Bacillus cereus MM3] Length = 566 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 96/253 (37%), Gaps = 11/253 (4%) Query: 3 FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62 E Q + L+ EQ T V ++P ++ L +I L + +L + Sbjct: 316 LEQVQGTLSLHSNVEQGTFIVCNIPLQTKLAHDIIRLLVVDDQALITNSLERILEHQTDF 375 Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119 +V + + + P ++ + + E + +L+ R + + T ++ Sbjct: 376 IVVGKAYDGSEALKLCEQLQPDIVLMDIQMPEMNGIEALLEMKRRWPNIKIVLMTTFEDS 435 Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173 + ++ Y + ++ L L++ G I + R++E L Q Sbjct: 436 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 495 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 KS + LT RE+E L +S G IA L +S T+ NY +++ K R Sbjct: 496 KS--TKQTSPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNR 553 Query: 234 SGAIAYAVRNNIV 246 AI A NI+ Sbjct: 554 EEAIKKARTENIL 566 >gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 241 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+GRE E L I+EG + +IA LGIS +TV ++ I+R+ R+ A +A + Sbjct: 177 LSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAAAVWAREH 234 >gi|328885230|emb|CCA58469.1| hypothetical protein SVEN_5183 [Streptomyces venezuelae ATCC 10712] Length = 1016 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 5/154 (3%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 +E Y ++RP +L H L + + G +L + + L + Sbjct: 864 AEVVAAYEPVERPYQLARAR-HRLADALLVEGGRREEATALLREAHATAVRLGARPLRED 922 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + L + L A + D +G LT RE L ++ G+T+ +IA L I Sbjct: 923 VELLAARARLSLAAEKPPAAAEPGDDTFG----LTPREQAVLGLVAAGRTNRQIAEELFI 978 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S T + ++++I+ K R A A A R +++ Sbjct: 979 SPKTASVHVSNILAKLGVSGRGEAAALAHRLHLL 1012 >gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 211 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +++ REVE L +++G + E+A L +S TV ++++ I K TR+GA+A A+ Sbjct: 148 KVSPREVEILRLLAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERR 207 Query: 245 IV 246 I+ Sbjct: 208 IL 209 >gi|27362891|gb|AAN86997.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum] Length = 204 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R+ E L I+ G ++ +I+ L IS TV +++ SI R+ + R+ A Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 226 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I+ Y + T + + + + RL +L Sbjct: 89 VFLALSVSDAAEDVISVIRSGARGYVTKTISGRDLADAVRRVRVGDAVFSP-RLAGF-VL 146 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ + V D +LT RE + L ++ G EIA L IS TV +++S++ Sbjct: 147 DAFSDRPGAAPPVDPEVD-QLTKRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVL 205 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RKT T R +A +V Sbjct: 206 RKTQTSNRHELSRWASDRRLV 226 >gi|317503562|ref|ZP_07961584.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315665304|gb|EFV04949.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 212 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 16/162 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D M LSE+ + +L H L + + ++ IR+GL Sbjct: 60 DSAELMILSERYTKVRWVLFCEDLSVDFVHVLVSSSPRFS-----ILLKECNLQEIRVGL 114 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 R I + R+ E+ LLA Q + + +LT E E L I+ G T+ Sbjct: 115 DYAIHDRRFICQ-RMAEM-LLAPAQPQL---------EHVKLTPTETEILKDIALGMTTR 163 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA S +TVN + +I RK T A YA+R ++ Sbjct: 164 EIAEKRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLI 205 >gi|309791797|ref|ZP_07686284.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308226119|gb|EFO79860.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 209 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L + EG + EIA L +S +TV +I++I+ K R A+ A++ + Sbjct: 149 LTERERDVLKLLVEGLNNAEIAERLVVSLSTVKYHISNILMKLGVDNRVAAVTKAIQKKM 208 Query: 246 V 246 V Sbjct: 209 V 209 >gi|307325986|ref|ZP_07605185.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888478|gb|EFN19465.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 230 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 11/224 (4%) Query: 29 RSDLLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82 D + R+ D + AL E VG + L +EQ D +V D Sbjct: 6 GDDAVIRVALADDQILVRAGFRALLAAQPDIEVVGEAADGEQALALVREQHPD-VVLMDI 64 Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 ++ +A + + L + F + + + + Sbjct: 65 RMPVLDGLAATRRITGDPALGEVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLR 124 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + + ++ L+A + A + + T RE E + + G + Sbjct: 125 AVRAVVGGDALLSPGVTRR--LIAEFAARSREPAPAAALAEL--TEREREVMALVGMGLS 180 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L +S T +++ M K + R+ + A + +V Sbjct: 181 NQEIARRLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGLV 224 >gi|300783580|ref|YP_003763871.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793094|gb|ADJ43469.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 427 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 2/178 (1%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 LVR +D + + P D+ + L +P + + Sbjct: 239 LVRHTEVDVDLVDPVGDASLPQDIAHTARTLTRGLVLAALDQPATTRLRASWRVDGPVLR 298 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 D+ C D R L G D + G + + Sbjct: 299 ITVRDD--CPEVADAVPPRGLTERLTTLGGHWEVDAVPSWGTTVTAVLPLGVAEPPELRA 356 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L RE+E L+ IS+G + +IA L +S +TV ++ +I+ K +R A A A Sbjct: 357 LDRLNPRELEVLSGISQGLRNRQIAEQLQLSEHTVKFHVRNILDKLDVSSRGEAAALA 414 >gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 215 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 Y I G++ G + ++ + + + L Sbjct: 101 GYLLKRTPPREIVAGIVQAHAGGSPMSPQVARQVVSFFHRVTDTATTAPPDP-EMSALAE 159 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 RE E L +S+G EIA LGIS +TVN++I I K ++R+ A+A Sbjct: 160 REREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVAK 210 >gi|89900655|ref|YP_523126.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345392|gb|ABD69595.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 231 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 11/148 (7%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L V + G Y T + + ++ ++ + + + L+AA Sbjct: 86 LMLTVSEDENDLAAALRGGAAGYLLKTIEGDALTAAIVRAMQGDSVVAPEMMNK--LVAA 143 Query: 168 YQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 Y+ + + + L+ RE + L I+ G ++ EI GI+ TV Sbjct: 144 YRGTSKEVPGIGTAQPPAVSAGPAMASLSPRERDILRGIARGASNKEIGREHGIAETTVK 203 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ I+RK +R A A ++ Sbjct: 204 IHVQHILRKLDVSSRVHAAVIATEQGLL 231 >gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 200 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + + G++ LT RE E L+ I++GK + EIA L I+ TV NYI+ I+ K R Sbjct: 129 DEAYSGEENPLTEREKEVLSLIADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIE 188 Query: 236 AI 237 AI Sbjct: 189 AI 190 >gi|312961526|ref|ZP_07776027.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284205|gb|EFQ62785.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 215 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 75/217 (34%), Gaps = 22/217 (10%) Query: 35 RMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDLV 87 R++ +D M + E VG + D + D I+ ++ P Sbjct: 8 RILLVDDHPMMRRGMRQILELEDDLQVVGEAGNGQEALDQIDAVQPDLILLDNNMPH--- 64 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLML 146 M E + + ++ ++I +D N Y + + + Sbjct: 65 --MNGLETLRRLRAMHYGGKVLLFTVSDAEDDIRDALRLDANGYLLKDMEPELVVEFIRD 122 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 +I L A +S H ELT RE + L I+ G ++ I Sbjct: 123 ALRGALVISPG-------LTRVLAQALRSPQPHAA--VELTERERQVLKTIAGGYSNKVI 173 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LGI+ TV ++ +++ K ++R A +A+ + Sbjct: 174 GHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210 >gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 1019 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE+ + ++ G ++ EIA L ++ NT+ ++ +I K A +R+ AIA A R N Sbjct: 955 PLSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRLN 1014 Query: 245 IV 246 ++ Sbjct: 1015 LI 1016 >gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 220 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 L++ Y + + ++ + G ++ELT RE L I++GK + EIA LGIS T+ + Sbjct: 135 LVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADGLGISIRTIETH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 A+IM+K K + A+ IV Sbjct: 195 RANIMKKLKVKNAVELVRIAIDEKIV 220 >gi|295704765|ref|YP_003597840.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802424|gb|ADF39490.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 212 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 5/150 (3%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 M E K + + L F I Y + RIR + +F Sbjct: 61 MDGVEATKLISDSTKAKPLILTTFDDDEYIIDAVKNGAKGYLLKNTEPERIRDAIKSVFN 120 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 ++ L +I D+ + T RE +T I++G ++ EI+ Sbjct: 121 GHTVLQDVVLDKIKSSLNAAVERESKADM-----TQFTERETSIMTLIAKGLSNKEISKT 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L IS TV NYI+SI+ KT + R+ Y Sbjct: 176 LFISEGTVANYISSILSKTGLEHRTQIAIY 205 >gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRN 215 D L G A +S E L+ RE E LT + G + EIA LG+S Sbjct: 125 DSLLSPGPTARLIQRFLRSPSAPETGGPECLSDREREVLTLVGRGLNNTEIAESLGLSPL 184 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T +++ IM K A + R+ + A + +V Sbjct: 185 TAKTHVSRIMGKLAARDRAQLVIVAYESGLV 215 >gi|209964176|ref|YP_002297091.1| transcriptional regulator, LuxR family protein [Rhodospirillum centenum SW] gi|209957642|gb|ACI98278.1| transcriptional regulator, LuxR family protein [Rhodospirillum centenum SW] Length = 216 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 9/158 (5%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLL 147 L D+ + + E V + + S + +R L L+ Sbjct: 61 PLPVADQIARLRKAAPEAGLVVLTGALDGDILCACQESAADACLSKAMPLEAVRRTLHLV 120 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 R++ L + + + G D LT RE E L+ + G ++ +IA Sbjct: 121 MLGQRVLPAAALS-----TTATESPGPADEPGRGPDL-LTVREREILSCLLGGGSNKDIA 174 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L ++ +TV + +++RK + R+ A +A+ N I Sbjct: 175 SRLNVAESTVKMHFKALLRKLRVQNRTQAAMWALSNGI 212 >gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4] Length = 74 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|29829271|ref|NP_823905.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29606378|dbj|BAC70440.1| putative LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 1004 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 R +R LL + + L G LA Sbjct: 884 ALLAAGRREEAAEQARAVRETATLLGAAPLLDAVETLVRRGRLA--------ETSPAADG 935 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LT RE + L ++ G+T+ +I L I+ T + ++++I+ K + +R+ A+ A R Sbjct: 936 TAVLTARENDVLRLLARGRTNRQIGEELFITGKTASVHVSNILAKLSAASRTEAVVIAYR 995 Query: 243 NNIV 246 ++ Sbjct: 996 EGLL 999 >gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 214 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +DF LT +E + L ++ GK+ IA +L IS TV ++ +I K + + A+A A+ Sbjct: 148 EDFNLTEQERKVLHYLVAGKSYKMIADVLFISLETVKTHLRNIYLKLQVHSGTEAVAKAL 207 Query: 242 RNNI 245 ++ I Sbjct: 208 KHKI 211 >gi|302560744|ref|ZP_07313086.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478362|gb|EFL41455.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRN 215 D L G A ++ E L+ RE E L ++ G + EIA LG+S Sbjct: 125 DALLSPGPTARLIERFLRTPPAPVTAGPECLSDREREVLALVARGLNNTEIADSLGLSPL 184 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T +++ IM + + R+ + A + +V Sbjct: 185 TAKTHVSRIMGRLGARDRAQLVIVAYESGLV 215 >gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 6/134 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + G L + + G LL P L R L A Sbjct: 93 VFEALRAGASGFLGKSAEADELLAAIRTVERGDALLSPAATKALISR-----FLTTPVAP 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G LT RE + +++EG ++DEIA L +S TV ++ M K + Sbjct: 148 R-QLDQAQRGALDALTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGAR 206 Query: 232 TRSGAIAYAVRNNI 245 R+ + +A R+ + Sbjct: 207 DRAQLVVFAHRSGL 220 >gi|255533126|ref|YP_003093498.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255346110|gb|ACU05436.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 263 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +D L+ RE E L W++EG +S IA L IS +TV N+ S+ KT T +++ Sbjct: 198 EEDKLLSKREKEVLLWMAEGLSSKLIADKLFISEHTVINHRRSMQDKTNTPNAVALVSFC 257 Query: 241 VRNNIV 246 ++N ++ Sbjct: 258 IKNGLI 263 >gi|300788334|ref|YP_003768625.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797848|gb|ADJ48223.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 225 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 18/176 (10%) Query: 83 PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + D + R L F + + Sbjct: 48 PDVVLMDIRMPGMDGIEATRRILATGGRSRVLVMTTFDLDEYAYAALRAGASGFLLKDAH 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-------KSYDVHWGKDFELTGR 189 + G+ + +I LL Y + D W LT R Sbjct: 108 PEELLAGIRAVAGGDAVIAPALTRR--LLDTYGHRLPDGGATPTPPADPRWE---SLTAR 162 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + L I +G T+ EIA L +S +TV ++ ++ K + R A+ A + Sbjct: 163 EQDILVAIGQGWTNGEIAERLVLSESTVKTHVGRVLAKIGARDRIQAVILAYDLGL 218 >gi|170077282|ref|YP_001733920.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002] gi|169884951|gb|ACA98664.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002] Length = 363 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L +++G +IA L IS +TV ++ + K K R AI A + + Sbjct: 303 LSQRERQVLALLTKGLRDRDIAQQLHISESTVKFHLNRTLSKLQAKNRYQAIYQATKQGL 362 Query: 246 V 246 + Sbjct: 363 I 363 >gi|284029283|ref|YP_003379214.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808576|gb|ADB30415.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 215 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 + + + A + ++ + LT RE + + ++ G+T+ EI L +S +T Sbjct: 125 ESMVSPSVTARLLEHFTQAAAPRTARPHPLTEREADVVRAVARGRTNGEITEELVVSLST 184 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V +++AS RK + R+ +A N +V Sbjct: 185 VKSHLASAQRKLGLRNRTELAVWAWENRLV 214 >gi|239628083|ref|ZP_04671114.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518229|gb|EEQ58095.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 268 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 30/63 (47%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 K D K + LT RE E + I G ++ +I L IS NTV +I ++ RK R Sbjct: 184 KETDKSRMKRYGLTEREEEIMELIISGISNQQIGEKLFISENTVKKHINNLYRKLDVVNR 243 Query: 234 SGA 236 S Sbjct: 244 SQL 246 >gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] Length = 219 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------LAAYQANM 172 G+D R LT AR + M+ +L+D EI L + A Sbjct: 86 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLAAKGEPVFSDEVAQY 145 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 146 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 205 Query: 233 RSGAIAYAVRNN 244 R A + N Sbjct: 206 RVAATILFLENK 217 >gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465] gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066] gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465] Length = 74 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] Length = 209 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%) Query: 59 SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116 SH +L+ D + + ++ D FD+V +P L + Sbjct: 4 SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAGKFQPDVILLDLNMKGM 63 Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170 T A G D R LT AR + M+ +L+D EI L QA Sbjct: 64 SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 123 Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 S ELT RE++ L ++ G ++ ++A L IS TV + Sbjct: 124 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 183 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 I +++RK ++R A + N Sbjct: 184 IRNLLRKLNVRSRVAATIMYLENK 207 >gi|269955414|ref|YP_003325203.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304095|gb|ACZ29645.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 212 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L ++EG ++ E+ L I+ TV ++ K R+ A+ A R Sbjct: 151 LTPREAQVLALVAEGCSNAEVGRRLFIAEATVKTHLLRAFAKLGVDDRTAAVTEARRRG 209 >gi|154486803|ref|ZP_02028210.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis L2-32] gi|154084666|gb|EDN83711.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis L2-32] Length = 245 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 164 LLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 +L+A+Q AN +H + L+ RE E + I+ G T E+A L IS TV Sbjct: 159 VLSAFQNGPSANGAFGGPIHDDELDRLSNREQEVMRLIARGYTYKEVASELFISIKTVET 218 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +++S++RK RS +A IV Sbjct: 219 HMSSVLRKLQLSNRSELTRWAADRRIV 245 >gi|330809798|ref|YP_004354260.1| two-component system response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377906|gb|AEA69256.1| putative two-component system response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 222 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 10/162 (6%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144 M + +LQ+ V T+ ++ Y + L Sbjct: 59 RMPVLNGLGAARILQQRQPGIKVVIFTMDDSPDHLEAAIGAGAVGYLLKDASRDEVLDAL 118 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + + + A M + + LT RE + L ++ G ++ Sbjct: 119 KRVAQGEEALNS------SVSARLLRRMTERGANGATQVQALTARERQVLGLVAGGFSNR 172 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI LGI+ T ++ ++ K R+ A V +V Sbjct: 173 EIGEKLGIAPGTAKAHVERVIGKLGAADRTQAAVRGVALGLV 214 >gi|309791785|ref|ZP_07686273.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226191|gb|EFO79931.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 205 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 45/100 (45%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R++ R G AA ++ + + LT RE + L +++G + I Sbjct: 100 LIEAIRVVHRGDATLAGSAAARVLDLLRRGEGAVAAADLLTPRERDILALLAQGDDNRAI 159 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A+ L +S TV N ++ I +K R+ A AV+ +V Sbjct: 160 ALKLSLSEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 199 >gi|110224491|emb|CAJ86500.1| quorum-sensing transcriptional regulator [Serratia marcescens] Length = 248 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 37/87 (42%) Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + A YQ + + + RE E + W S GK+ EIA+ILGI TV Sbjct: 153 MHGKMTALYQEMSTPADFEKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKY 212 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I + ++K AI V ++ Sbjct: 213 HIGNAVKKLGVTNAKHAIRLGVELQLI 239 >gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] Length = 209 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL---AAYQANMFKSYDVHW- 180 G+D R LT AR + M+ +L+D EI L A Q S +V Sbjct: 76 GVDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAAQGEKVFSDEVALY 135 Query: 181 --------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 136 LSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195 Query: 233 RSGAIAYAVRNN 244 R A + N Sbjct: 196 RVAATIMFLENK 207 >gi|331699447|ref|YP_004335686.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954136|gb|AEA27833.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 211 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + L+ RE++ + ++ G+T+ EIA L +S +TV ++ ++ K Sbjct: 135 RHLTTPAPRPTLPEPLSPREIDVVRAVARGRTNAEIAADLFVSLSTVKTHLTNVQAKLGA 194 Query: 231 KTRSGAIAYAVRNNIV 246 + R A+A + +V Sbjct: 195 RNRVEVAAWAWEHGLV 210 >gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 87 VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 +R + + +L+R L F T + + + + Sbjct: 63 IRMPTMDGLEATRRILRRTPDCRVLMLTTFDLDHYVYTALSVGASGFLLKDVTPEHLAAA 122 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + L+ ++ L+ + + + H LT RE+E + G ++ Sbjct: 123 VRLVDTGDALLAPSITRR--LVERFASPSAPAPAQHADL-AALTPRELEVPGLLGRGLSN 179 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+AV L +S TV +++A I K A + R+ A+ A +V Sbjct: 180 AELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGLV 222 >gi|150004020|ref|YP_001298764.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254882923|ref|ZP_05255633.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294778059|ref|ZP_06743493.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|319639728|ref|ZP_07994460.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149932444|gb|ABR39142.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254835716|gb|EET16025.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294448117|gb|EFG16683.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|317388644|gb|EFV69491.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 254 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 1/172 (0%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNRYCSLT 134 +V SD L+ + Y +++ +L FH P L Sbjct: 83 EVVPSDEINRLMEINEAGFRFYYDQPIEKRLDLSIEYNFHIHTSEKHPHLIHHKLTPVLL 142 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 I + L + + D + + F+ + L+ RE E L Sbjct: 143 SGKGDIWLALCTVSLSPEKNIGDVVISDHTCTDHYIYSFEGRRWRKQPELILSDREKEIL 202 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +G ++ EI L I NTV + I K + + A+ A ++ Sbjct: 203 QLSVKGLSNTEIGETLFIDANTVKFHKKKIFEKLHAENITEAVGIAANLRLI 254 >gi|300789707|ref|YP_003769998.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799221|gb|ADJ49596.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 221 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 11/171 (6%) Query: 81 DWPFDLVRCMALSEKDK---YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSL 133 P ++ + + E D ++L+ P + F + + + Sbjct: 46 HHPDVVLMDIRMPELDGLAATRHLLEDPGVSTRVVILTTFDLDEDVYGALRAGASGFLVK 105 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 + + + ++ ++ L+A + A + LT RE E Sbjct: 106 DTEPEELIHAVRVVARGDALLAPSITRR--LIAEFAARGTRP--AASPALDRLTDREREV 161 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ ++ G ++DEIA L +S T +++ IM KT T R+ + A + Sbjct: 162 LSLVAAGLSNDEIARELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESG 212 >gi|291301282|ref|YP_003512560.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570502|gb|ADD43467.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 206 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L ++ G ++ IA L I+ TV ++ I K +R+ A+A A+ + Sbjct: 144 LTSREVEILRALARGDSNRAIAKRLFITEATVKTHLVHIYAKLDVDSRTAAVAAALERRL 203 Query: 246 V 246 + Sbjct: 204 I 204 >gi|228474840|ref|ZP_04059571.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|314935685|ref|ZP_07843037.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228271503|gb|EEK12871.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|313656250|gb|EFS19990.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 217 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 FH L ++ L V + G + D L+ + Sbjct: 91 FHVLRNGAKGYILKNSPDEQLILAVRTVYKGETYI---------DMKLTTSLVNEFVNVS 141 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + L+ RE+E L I++G + EIA L +S TV + IM K K+ Sbjct: 142 NQDEKATNDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLNLKS 201 Query: 233 RSGAIAYAVRNNIV 246 + + YA++ ++ Sbjct: 202 KPELVEYALKKKLL 215 >gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 211 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 M L R + R + + Y +S + L +++ + +++G T+ Sbjct: 110 MDLKRSIRAVARGEVAMDPKVVGYLMQQMRSPSADKEERIPLNRQQLAIIRLVAQGYTNR 169 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA + +S TV Y+A MR+ K R A A +N + Sbjct: 170 EIAERMFLSEKTVKGYLAEAMRRMGVKNRVEAAMVASKNGWI 211 >gi|327450891|gb|EGE97545.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|328754312|gb|EGF67928.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] Length = 237 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 10/174 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 +V P ++ + + D ++ +++ + T + +D Sbjct: 40 DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99 Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 D + GL + ++ + + + +Q V K +LT RE Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +E ++ G ++ EIA L +S TV ++++ + K + R +A +R Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALVLRVG 208 >gi|298252261|ref|ZP_06976064.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546853|gb|EFH80721.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1056 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 + + L D L+ R W +L A+ Sbjct: 929 LVLVQARGEGFLRLFLDEGEEVETLLRELLPSLTEKPLRAWTQSILHAFAHPFSPQTSSP 988 Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 FE L+ +E L ++ G+++ EIA L IS NTV ++ SI RK +R A A Sbjct: 989 DSTLFEPLSTQEQRVLALLAAGRSNPEIAETLIISVNTVKGHVKSIYRKLDVNSRIEASA 1048 Query: 239 YAVRNNIV 246 A R ++ Sbjct: 1049 AASRLKLI 1056 >gi|289645062|ref|ZP_06477093.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505136|gb|EFD26204.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 216 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 6/176 (3%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++ +V D ++ ++ L + + F + + Sbjct: 44 QRTRPDVVLLDIRMPVLDGLSALRAIVEDPHLDQTRAVMVTTFELDEYVFEALRSGASGF 103 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + A + + ++ ++ + + VH LT RE Sbjct: 104 VLKDAEPAELLRAIRVVAAGESLLSPTVTRRV------IDAFARRPAVHTPDLSGLTARE 157 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + + G ++DEIA L IS T +++ +M K + R+ A + +V Sbjct: 158 REVMGLVGRGLSNDEIAQRLFISPATARTHVSRVMVKLGARDRAQLAVLANQAGMV 213 >gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 105 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 41/69 (59%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D + L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT+T R Sbjct: 2 SDSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVE 61 Query: 236 AIAYAVRNN 244 + ++++ Sbjct: 62 LVRWSLQWG 70 >gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 100 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 40/63 (63%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ L+ RE++ + I+ G ++ +IA L IS+ TV+N++++I+ KT T R + +AV Sbjct: 8 ENQSLSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRWAV 67 Query: 242 RNN 244 + Sbjct: 68 QWG 70 >gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 222 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 4/144 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 + H +++ P Y ++ L + + + Sbjct: 76 AQSVVVTIHDDDDHLFPALQAGAYGYLLKEQPREQLMEHLQRISQGEPPLSPSIARRMIS 135 Query: 165 LAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + QAN ++Y + + +LT RE E L +++G T EI V LG+SR+T+ +Y+ Sbjct: 136 YFSAQANRPQAYQPTTDQLMPNVQLTEREREVLLRVAKGFTLPEIGVQLGLSRHTIADYV 195 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 I RK +R+ A A R + Sbjct: 196 KQIYRKLNVSSRAEAALEAQRLGL 219 >gi|75812313|ref|YP_319932.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705069|gb|ABA24743.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 220 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + + Y + + I + + + + + + GLL + K Sbjct: 94 ISSGADSYILKKNNTSLIVEAIKSTY-NNKSLFDSEIIQRGLLKIFPTQKAKGKIF---- 148 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D LT RE+ L I+ G ++ +I L I NTV N+ +I K +R AI Sbjct: 149 DDHLTQREISVLALIAAGFSNKQIGEKLFIGENTVKNHARNIYSKLGVDSRINAILKGSE 208 Query: 243 NNIV 246 + Sbjct: 209 LGYI 212 >gi|328885722|emb|CCA58961.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 221 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +T RE E L ++EG +S EI +L IS TV + A++++K + R YA+ Sbjct: 155 PDRAITEREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGLRDRLELTRYAI 214 Query: 242 RNNIV 246 R ++ Sbjct: 215 RVGLI 219 >gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 207 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 LF R + R +A+ + + LT RE + L ++ G + EI Sbjct: 112 LFAAIRAAAQGRTALSAPVASRVMDRMRG-----AAGPSLTDRERDILGQLARGLGNREI 166 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L IS TV ++ I K TR+GA+A A ++ Sbjct: 167 ARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKEQRLL 206 >gi|300087378|ref|YP_003757900.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527111|gb|ADJ25579.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 247 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 151 GRIILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 R+I D LL A N+ K+ + LT REV+ L + G ++ EI Sbjct: 132 HRVIEGDAQVSTVLLRAAVENLLQNGRKTLAERTAEAAHLTAREVDVLRLMGNGDSNKEI 191 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + L I+ +TV +I +++ K ++R+ A A + I Sbjct: 192 SSSLNITLDTVKKHIRNVIDKLQARSRTHASIIAAQAGI 230 >gi|254385617|ref|ZP_05000941.1| response regulator [Streptomyces sp. Mg1] gi|194344486|gb|EDX25452.1| response regulator [Streptomyces sp. Mg1] Length = 210 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L + +G T+ +I L IS TV ++ +K + R+ A+ A+ + Sbjct: 149 LSERECEVLQLVRQGLTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGL 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens] Length = 214 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 10/161 (6%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 V + + +R + + E A + Y + G Sbjct: 57 VNMPVMDGVAATALIKERMPATKIIMLTSYKEVEYVLAALSHGAEGYLLKAIHPKDLAAG 116 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + ++ G +I ++ +A+ S +F LT RE+E L ++ G + Sbjct: 117 IRVVQAGGTLISQE-------MASKMIKNMNSATPAKHNEFGLTAREIEVLHKLAAGLRN 169 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EIA L +S TV NYI++I K K R A A + Sbjct: 170 QEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKARDSG 210 >gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125] gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125] Length = 212 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 4/160 (2%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLM 145 VR + + + + R E + T ++ + C L D R+ Sbjct: 55 VRMPSKTGLEATKEIRARHPEAKILILTTFADDEYALEALKYGACGYLLKDADADRLIHS 114 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + + D +L + + LT RE+ + + EGK++ E Sbjct: 115 IKSALNGGMSLDDTVAAKVLPRLLHQQTGEVEERTAR---LTKRELAVVKLVGEGKSNQE 171 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L +S TV NYI+ + K + R+ YAV+ + Sbjct: 172 IADALFLSVGTVKNYISQALDKLELRDRTQLAIYAVKQQL 211 >gi|325676336|ref|ZP_08156015.1| response regulator [Rhodococcus equi ATCC 33707] gi|325552897|gb|EGD22580.1| response regulator [Rhodococcus equi ATCC 33707] Length = 231 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 118 ENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 E++ P+G + +L + ++ L + F + ++ D G+ A + Sbjct: 105 EDVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV---DSTVRAGIEALARQCRRIVA 161 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D + F L+GRE + L +++G ++ EIA L ISR TV ++ +I KT T++R Sbjct: 162 DQSERESFRLSGREHQILVLVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSRVRV 221 Query: 237 IAYAVRNNIV 246 A I+ Sbjct: 222 AVRATELGIL 231 >gi|302539653|ref|ZP_07291995.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457271|gb|EFL20364.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 11/172 (6%) Query: 81 DWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLT 134 P V +A+ + L R + T+ +N A + Y + Sbjct: 51 HHPDLAVLDIAMPRMTGLQAARELSRSQPGIRLLMLTMYDNEQYFFEALAAGASGYVLKS 110 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 + L+ + A + ++ ++ + +T RE E L Sbjct: 111 VADRDLVEACRATMRGE-----PFLYPGAVNALIRNHLDRARHGEPLPERAITDREEEIL 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EG TS +IA +L IS TV + A++++K K R YA+R ++ Sbjct: 166 KLVAEGHTSQQIADMLVISVKTVERHRANLLQKLGLKDRLELTRYAIRAGLI 217 >gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701] gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701] Length = 89 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E + ++ G T+ EIA+ L IS+ TV+N++++I KT K R + +A+ N Sbjct: 14 LSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKTGAKNRVALLNWAMDNGK 73 Query: 246 V 246 + Sbjct: 74 I 74 >gi|225873102|ref|YP_002754561.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794212|gb|ACO34302.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 237 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 41/82 (50%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L ++ + K + LT RE+E + I EG ++ +IA +S TV ++++I Sbjct: 152 LVGALHDLMQKAATPERKTYGLTPREMEVVGCIVEGCSNRDIAKQFTLSEETVKRHLSNI 211 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 KT TR +A+ +++V Sbjct: 212 FDKTGVSTRLELAMFAIAHHLV 233 >gi|222106444|ref|YP_002547235.1| two component response regulator [Agrobacterium vitis S4] gi|221737623|gb|ACM38519.1| two component response regulator [Agrobacterium vitis S4] Length = 216 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 33/82 (40%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L +LT RE E L ++ G T+ EIA L I+ TV ++ I Sbjct: 131 LVRRMLTRVSRTSPAEDAISQLTTREREILQEVARGATNKEIARRLSIAPGTVKVHVERI 190 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K R+ A A + +V Sbjct: 191 IAKLRVGDRTQAAVLAAQAGLV 212 >gi|239916849|ref|YP_002956407.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414690|ref|ZP_06246432.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838056|gb|ACS29853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 227 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 8/175 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ + + + K + R + T + + P L Sbjct: 52 DVVLMDMQMPLMDGVEATRRIKDTHPAIR---VLAITTFTSEDYLVPALRAGAGGYLLKD 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREV 191 +G + +G +L LLA+ + + S +LT RE+ Sbjct: 109 AEPPAILGAIQAVHRGESVLSPA-VAAKLLASIERDRPTVGPTSVQPGSPDGSDLTEREL 167 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G+++ EIA L +S +TV + IM K + R I A + +V Sbjct: 168 GVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLV 222 >gi|302535883|ref|ZP_07288225.1| response regulatory protein [Streptomyces sp. C] gi|302444778|gb|EFL16594.1| response regulatory protein [Streptomyces sp. C] Length = 207 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 12/161 (7%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 L + E + L P + + +IT G L + + Sbjct: 57 LGEGIDGVEATRRITALPGPPHVLVLTTYDTDADITRAIGAGATGYLLKAERPEELFAAI 116 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 GR L + + A+M G LT RE++ L ++ G + + Sbjct: 117 HSAAAGRTTLS-----APVASRVMAHM-------RGTRPTLTDRELDILGQLARGLGNRD 164 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS TV ++ I K TR+GA+A A ++ Sbjct: 165 IARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 205 >gi|218677979|ref|ZP_03525876.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 121 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 167 AYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A+ + Y++H D L+ RE+ECL W + GK +I+VILGIS +T +Y+ + Sbjct: 38 AHLIHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTA 97 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K T S A + AV+ I+ Sbjct: 98 RFKLGCATISAAASRAVQLRII 119 >gi|154251602|ref|YP_001412426.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] gi|154155552|gb|ABS62769.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] Length = 921 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 R++ + L+ + H + ELT RE E L +S G ++ +A L Sbjct: 827 DRLLSEAGEFAPALMPDAGHDENDDISPHLLE--ELTDREREILRLVSNGFSNKALADRL 884 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S NTV ++ +I K R A++ A ++ Sbjct: 885 SLSTNTVKWHLRNIFEKLQIGNRMQAVSVARHFGLI 920 >gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 216 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 L VF I A Y + L+ + G I Sbjct: 80 CDSLVVTVFADEDRVIEAIAAGATGYILKNDRPEEVGRNLLTVLEGGSPISP-------Q 132 Query: 165 LAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +A Y N+ + G + LT RE + L I+ G E+A L I+ TV +I Sbjct: 133 IARYLLNLVPQPEEPKDDGLEIRLTAREKDILRLIAHGFKRQEVADKLNITVGTVGTHIN 192 Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245 ++ RK + + A+A A R + Sbjct: 193 NVYRKLEVGSNTQAVATANRLGL 215 >gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 222 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Query: 165 LAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 LA F+ D + L+ RE E L +++G ++ +IA L +S TV N+ Sbjct: 136 LAGLVLGEFRRMSSAPAADADETPRLSDRETEVLRLVAKGLSAKQIATRLSLSHRTVENH 195 Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245 + S +RK R YA+ + + Sbjct: 196 VQSTLRKLQLGNRVELTRYAIEHGL 220 >gi|149922983|ref|ZP_01911402.1| response regulator receiver [Plesiocystis pacifica SIR-1] gi|149816169|gb|EDM75678.1| response regulator receiver [Plesiocystis pacifica SIR-1] Length = 371 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 13/149 (8%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 +AL+ + + ++ TLP R ++ A+ G +L Sbjct: 225 DLALAGSQLPKALKEWLAPVYRGRRETLP---GFQRRGQGRVLAVELHPAQEPHGGGMLT 281 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + R + R L + A ++ + D LT R+ E W+S GKT+ EI+ Sbjct: 282 IEARALPRAELPQ-----AVADHVPQLVD-----GLGLTPRQAEVALWMSCGKTNAEIST 331 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAI 237 IL I TV ++ I+ + + R+GA Sbjct: 332 ILSIRPATVKKHVERILDRLGVENRTGAA 360 >gi|254785114|ref|YP_003072542.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237684126|gb|ACR11390.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 220 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 2/149 (1%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 L KY +Q E + ++ S F V + L + Sbjct: 62 NGQDLENLSKYVREIQDSFESVTAALLNAEYESEQESLLEWPCVSGLFYVDTEQEQL--I 119 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 ++ D LL + K+ + +LT RE + L I +G T+ +I+ Sbjct: 120 RGLKCLLDGDFWVPRRLLHTFLDKNRKAPSNIKRPNVKLTKREKQILKLIKDGATNADIS 179 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236 L +S +TV +++ ++ +K + R A Sbjct: 180 EALSVSEHTVKSHLYNVYKKIGVRNRLEA 208 >gi|87123539|ref|ZP_01079390.1| response regulator like protein [Synechococcus sp. RS9917] gi|86169259|gb|EAQ70515.1| response regulator like protein [Synechococcus sp. RS9917] Length = 231 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 4/78 (5%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +AN+ + D + L+ R++E L ++EG ++ EIA L I+ NTV ++++ IM++ Sbjct: 157 EANVMEPSD----QGVVLSERQLEILALVAEGLSNREIATQLQITANTVRDHLSEIMQRL 212 Query: 229 ATKTRSGAIAYAVRNNIV 246 R+ A++ A+R ++ Sbjct: 213 GVGNRASAVSSALRLRLI 230 >gi|330467590|ref|YP_004405333.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810561|gb|AEB44733.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 239 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 10/176 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCS 132 +V DW + + + + R V + P + Y S Sbjct: 48 HVVLVDWELAGPTTLDMVGALRTHAPESR-----IVVLSGRDDPRIVPELLALGVRAYLS 102 Query: 133 LTFDVARIRIGLMLLFPKGRI--ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + + + + + ++ + + + L+ RE Sbjct: 103 KSVTSDELLATIRSVSREEGRVHLILSAGRRPVVPGGGEFPRERGGSRAAPHSVRLSERE 162 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L+ +E ++ +IA L IS TV ++ + +K +R A+ A+ ++ Sbjct: 163 HDVLSLAAEALSNSQIARRLYISEGTVKRHMRHVFKKLNAVSRIDAVNKAISAALI 218 >gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] Length = 596 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 9/144 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEI 162 L F + + Y + + + + L++ +I +D R+W+ Sbjct: 458 RVLILSTFQDIERAKEIIRSGADGYLLKSIESRELAESIRLVYRGATMIDQDLFHRMWD- 516 Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 S GK++ LT RE+E L +S+G IA L +S TV NY + Sbjct: 517 -----GTDEAEPSGLKFDGKEYGLTKRELEVLNLLSQGIRYKTIASELYLSNGTVRNYAS 571 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K R A+ A ++ Sbjct: 572 TLYDKLGVKNREEAVQKARDTGLL 595 >gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 596 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L F + Y + + + + L++ G +I +D + Sbjct: 458 RVLILSTFQDTERAKEIMRSGADGYLLKSIESRELAETIRLVYRGGTVINQDLFHRMWDG 517 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + ++ D G+++ LT RE+E L +S+G I+ L +S TV NY +++ Sbjct: 518 NDEEESVGPRSD---GEEYGLTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLY 574 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R A+ A ++ Sbjct: 575 DKLGVNNREEAVQKARDTGLL 595 >gi|291302684|ref|YP_003513962.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571904|gb|ADD44869.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVI 209 + D +AA ++ + L+ RE + L I+ GK++ EI Sbjct: 37 EPLSIDGRMLFKAVAALGIDLEPPKPTALRTSIQRGLSARESQVLLAIASGKSNAEIGRE 96 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ +TV + + RK + R+ A+A A R I+ Sbjct: 97 LFITEDTVKTHARRMYRKLGARDRAHAVAEAFRVGIL 133 >gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 223 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++EG ++ +IA + +S TV N+ ++M+K ++ + YA R + Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216 Query: 246 V 246 + Sbjct: 217 I 217 >gi|158318837|ref|YP_001511345.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114242|gb|ABW16439.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 214 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRN 215 + L G A D + LT RE E L I+ G+++ EIA L +S Sbjct: 124 EALLSPGATRAVITRALSHPDAPAPERLASLTAREREVLRLIAAGRSNQEIADELVVSPL 183 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T ++ I+ K + R + A + Sbjct: 184 TAKTHVGRILAKMGARDRVHLVIAAYEAGL 213 >gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 3/135 (2%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQ 169 F T + + + T + L L+ + + +E + + Sbjct: 84 FSTREHVVAAVQAGASGFIPKTVSGTAMVNALRLVLSGEKYLPSSSFFEDVTVHMPMMPL 143 Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 +L+ RE E L + EG+T+ EIA+ L + T+ ++ ++ RK Sbjct: 144 QQRPTRTGEIPAPFDKLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIG 203 Query: 230 TKTRSGAIAYAVRNN 244 R+ A+ A+ + Sbjct: 204 AANRAQAVRIAMSSG 218 >gi|318076428|ref|ZP_07983760.1| two component system response regulator [Streptomyces sp. SA3_actF] gi|333026664|ref|ZP_08454728.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332746516|gb|EGJ76957.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 209 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 ++I G R + + + G+ +L DR + LLA +A Sbjct: 81 FADDDSILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVL-DREVQDRLLATVRARPT 139 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S G +LT RE E LT I +G + IA L +S TV +I ++ K + R Sbjct: 140 ASGQ---GLPADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDR 196 Query: 234 SGAIAYAVRNNI 245 + A+ A+ + Sbjct: 197 AEAVRRALTAGL 208 >gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45] gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45] Length = 253 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 25/249 (10%) Query: 21 SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---FQEQKLDSI 77 S + L S L R+ + + +Y + F+++ L Sbjct: 7 SIRNRLSEGSHLGQRVDAAFRQMQGVGFDGMIYDYTPMVSGPGADVPIPSVFEQRNLGDE 66 Query: 78 VSSDWP------FDLVRCMALSEK-------DKYYNVLQRPTEL--FCPVFHTLPE---- 118 + W D V+ +A+ D + + RP PV L E Sbjct: 67 MRQHWSEDEYIRLDPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLREREVF 126 Query: 119 -NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 +T P + N + V+ R R I L L + Sbjct: 127 SGVTVPIHLPNGDFATVTGVSLGRRQN-WSGGTSRAIADLSLI-AHLFNQSAVELLGFDH 184 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 ++ LT RE ECLT+ S G ++ E A I+ S TV ++ + MRK + R+ A+ Sbjct: 185 EDGTQEVRLTPRERECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAV 244 Query: 238 AYAVRNNIV 246 A R ++ Sbjct: 245 TIATRRRLI 253 >gi|259502947|ref|ZP_05745849.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|259169072|gb|EEW53567.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM 16041] Length = 217 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 DV+ L+ RE E ++ G ++ EI+ L IS TV + A+I RK +R Sbjct: 146 DVNLKGYNVLSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVEL 205 Query: 237 IAYAVRNNIV 246 + YA+ ++++ Sbjct: 206 VRYAIHHHLI 215 >gi|118471585|ref|YP_888614.1| hypothetica lprotein [Mycobacterium smegmatis str. MC2 155] gi|118172872|gb|ABK73768.1| tetratricopeptide repeat family protein [Mycobacterium smegmatis str. MC2 155] Length = 546 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 7/185 (3%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 L R D+ + Q+ D A + + + F +N+ Sbjct: 364 LARDDIGEAQRY-----CDQLAAGAEAFATPGYRGWAAHARGAVLVRRGEFEAALDNL-G 417 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWG 181 A + R +D+A + + L Y+ + V Sbjct: 418 AALREYRLQQERYDIAEVYEWMALAHRGLGDDTAADTDIATAENIYEQLAVQPSGVCGRA 477 Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE+E L I+ G T+ ++A IS TV ++A+I K +R+ A+ +A Sbjct: 478 SPGGLTRREIEVLRAIAGGATNRQVAHQFVISDKTVGRHLANIYTKLGVSSRTAAVTWAY 537 Query: 242 RNNIV 246 +N +V Sbjct: 538 QNGVV 542 >gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E LT ++ G ++ EIA L +S TV ++ I+ K + R A+ A + Sbjct: 160 LTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIGL 219 Query: 246 V 246 V Sbjct: 220 V 220 >gi|315505839|ref|YP_004084726.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412458|gb|ADU10575.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D R L V + G LL P L DR A+ Sbjct: 91 VYAALRAGASAFLLKDTRPADLAEAVRVVARGEALLAPTVTRRLLDR----------YAD 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE E LT + ++ EIA L +S TV ++++I+ K + + Sbjct: 141 RLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLSLR 200 Query: 232 TRSGAIAYAVRNNIV 246 R A+ A +V Sbjct: 201 DRIQAVVLAYDTGLV 215 >gi|302519506|ref|ZP_07271848.1| two component system response regulator [Streptomyces sp. SPB78] gi|302428401|gb|EFL00217.1| two component system response regulator [Streptomyces sp. SPB78] Length = 221 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 ++I G R + + + G+ +L DR + LLA +A Sbjct: 93 FADDDSILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVL-DREVQDRLLATVRARPT 151 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S G +LT RE E LT I +G + IA L +S TV +I ++ K + R Sbjct: 152 TSGQ---GLPADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDR 208 Query: 234 SGAIAYAVRNNI 245 + A+ A+ + Sbjct: 209 AEAVRRALTAGL 220 >gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] Length = 218 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + S D + + ++ L L P + S V +L Sbjct: 51 IETSSSDAWGKLKEQLVNLRVKCDIILFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110 Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 R++L D+LW + + + + + +LT RE ++ +S G Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGS 170 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + EIA L IS +TV ++ S RKT + R +++A +N Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei] Length = 246 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L W S G T EIA I+GIS TV ++ +++ K AI V + Sbjct: 181 FTAREHEVLYWASMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELEL 240 Query: 246 V 246 + Sbjct: 241 I 241 >gi|330503564|ref|YP_004380433.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328917850|gb|AEB58681.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 907 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 37/78 (47%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ ++ K Sbjct: 827 QCRRLSIDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHLHNLFSKL 886 Query: 229 ATKTRSGAIAYAVRNNIV 246 ++R+ A+ ++ Sbjct: 887 GVRSRTQAVLKGKSLGLL 904 >gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 224 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 8/176 (4%) Query: 77 IVSSDWPFDLVRCMALS---EKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYC 131 I+ S P ++ + L + ++L++ ++ H PE + + Sbjct: 42 ILKSSKPDVIILDINLPDKNGMELAEDILRKHGLVKILFLTMHDEPEYVGRVLHIGAAGY 101 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGRE 190 L I + +G +L+ L E +A ++ + + L+ RE Sbjct: 102 ILKNAADTELINAIRAVKRGEFVLQRGLMEN--IARQKSRKLSGHTIEAAPPKASLSKRE 159 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ G T E+A LGIS T+ + A+IM TK RS + YA+ + ++ Sbjct: 160 TEVLQLIALGYTQQEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHGLI 215 >gi|238062472|ref|ZP_04607181.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884283|gb|EEP73111.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 177 DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D H + + LT RE E LT +++G ++ EI + +S TV +++++I+ K R Sbjct: 149 DEHAVRAVQRLTEREREVLTLLADGLSNSEIGGRMFLSAGTVKDHVSAILTKLGVDNRVR 208 Query: 236 AIAYAVRNNIV 246 A A R ++ Sbjct: 209 AALLAERAGLL 219 >gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603] gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603] Length = 207 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 17/215 (7%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + E + F ++ E+ L I + P ++ + + + Sbjct: 1 MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKE-PDVILMDLNMPKMSGL 57 Query: 98 -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + + P+ N + Y D + +G Sbjct: 58 ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 I+L+ + E + Y+ + V LT +E+ L I+ G + EIA +G Sbjct: 116 EILLQPDIMEK--IVKYKRKEVHADKVEGN---NLTEKELFVLKAIARGYKNKEIAFDMG 170 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV Y+ +I K +RS A+A ++ ++ Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205 >gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] Length = 136 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 39/65 (60%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 KD +++ RE E L I+EG ++ EIA L +S +T+ ++++++ K K R+ A+ A Sbjct: 72 KDLDISNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKAK 131 Query: 242 RNNIV 246 I+ Sbjct: 132 SLQII 136 >gi|330961775|gb|EGH62035.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 910 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 16/179 (8%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCS-------LT 134 F+ ++ + + + + +R E+ + + + I G + + L Sbjct: 731 FERLKGEGQASEQRLQALEKRAQEVGSQLLQLIAMTQQIGLLLGQARQDEARNLLLRCLP 790 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELT 187 + +L + L ++L + LL + + L+ Sbjct: 791 VAAGGALLPFRVLLGEHARWLHEQLLQAPPGTVRDALLEKLPPCTAPALPEPAHGNDCLS 850 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 851 VRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGLL 909 >gi|330817555|ref|YP_004361260.1| response regulator receiver protein [Burkholderia gladioli BSR3] gi|327369948|gb|AEA61304.1| response regulator receiver protein [Burkholderia gladioli BSR3] Length = 324 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + F LT RE E L W+S GKT+ +I IL ++ TVN ++ + RK +TRS Sbjct: 259 ERFGLTTREAEVLLWVSRGKTNRDIGDILDMAPRTVNKHLEHLFRKLHVETRS 311 >gi|318061834|ref|ZP_07980555.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 221 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 ++I G R + + + G+ +L DR + LLA +A Sbjct: 93 FADDDSILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVL-DREVQDRLLATVRARPT 151 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S G +LT RE E LT I +G + IA L +S TV +I ++ K + R Sbjct: 152 ASGQ---GLPADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDR 208 Query: 234 SGAIAYAVRNNI 245 + A+ A+ + Sbjct: 209 AEAVRRALTAGL 220 >gi|302528552|ref|ZP_07280894.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437447|gb|EFL09263.1| two-component system response regulator [Streptomyces sp. AA4] Length = 216 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 9/201 (4%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY------NVLQRP 105 L +G++ + V + V P ++ + + D + + P Sbjct: 17 LRTILGSAGDIEVVAQAGDGAEAVEEVVRHRPSVVLMDLRMPGVDGLAAIERICTLPEPP 76 Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 + F I + + + + + ++ + L Sbjct: 77 AVVALTTFDADTYVIRALRAGAAGFLVKSTPPEDLIGLVRVAADGHTVLSPSAARRLVAL 136 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 +A + D + LT RE + L + EG ++ +IA L ++ TV +Y++ ++ Sbjct: 137 SADGH---RRDDEARRRTAGLTERERDVLACLGEGLSNADIAARLHLAEATVKSYVSRML 193 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K R+ A A +V Sbjct: 194 VKLDCTNRTQAGLLAHEAGLV 214 >gi|331699089|ref|YP_004335328.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953778|gb|AEA27475.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 227 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 11/145 (7%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + + + + L Sbjct: 90 VFLALSVSDAAEDVIAVIRAGARGYVTKTISGRDLADAVRRVHGGDAVFSP-------RL 142 Query: 166 AAYQANMFK-SYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 A + ++F D EL T RE + L ++ G EIA L IS TV ++ Sbjct: 143 AGFVLDVFSDRPGAAPPGDPELDLLTRRERDVLRLLARGYAYKEIAGELFISVKTVETHV 202 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 +S++RKT R +A +V Sbjct: 203 SSVLRKTQLSNRYELSRWASDRRLV 227 >gi|298369040|ref|ZP_06980358.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] gi|298283043|gb|EFI24530.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] Length = 218 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +++ G ++ IA L ++ +T+ ++ +I+RK +R A YAV++ + Sbjct: 153 LTPREMEILGYLAAGHSNKVIARHLELAESTIKVHVQNILRKLNLSSRVQAAVYAVQHKV 212 >gi|256785041|ref|ZP_05523472.1| regulatory protein [Streptomyces lividans TK24] gi|289768934|ref|ZP_06528312.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] gi|289699133|gb|EFD66562.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] Length = 166 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKG 151 SE + L+RP +L V + L + + G D R + +AR + P Sbjct: 2 SEAVTAFECLERPYDLAR-VRYRLADALLAAGGDDERARATELLRLARTVADHLGARPLS 60 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + L + S LTGRE + L +S+G+T+ +IA L Sbjct: 61 DAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVSDGRTNRQIAEELF 120 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IS T + ++++I+ K R A A A R + Sbjct: 121 ISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 154 >gi|209863940|gb|ACI88885.1| AlnR6 two component response regulator [Streptomyces sp. CM020] Length = 218 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 63/163 (38%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR + + +++ R L F + + + G Sbjct: 55 VRMPGMDGIEATRRIVESGGRSRVLVLTTFDLDEYAYAALRAGASGFLLKDALPDELTAG 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I + L+ A+ A++ + + LT RE E LT I+ G ++ Sbjct: 115 IRAVASGDAVIAPGLTRK--LIDAFSAHLPGTTPAQDRQLTALTTREREVLTAIATGWSN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA ++ +TV ++++ I+ K + R A+ +A +V Sbjct: 173 TEIANRFSLAESTVKSHVSHILAKIGARDRVQAVIFAYDMGLV 215 >gi|320457478|dbj|BAJ68099.1| putative two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 132 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 33/73 (45%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A S + LT RE E ++ + G TS EI LGI +TV YI + Sbjct: 52 TAQEAYSKLSPEDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVT 111 Query: 226 RKTATKTRSGAIA 238 K K R+ A+ Sbjct: 112 EKMDVKNRTQAVI 124 >gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 40/64 (62%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + + RE+E L + ++G TS EIA+ + ++++TV+ ++ +I++K + + AIA AV Sbjct: 179 ETSFSNRELEVLRYTADGMTSSEIALTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAVL 238 Query: 243 NNIV 246 + Sbjct: 239 LGYI 242 >gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] Length = 192 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 7/184 (3%) Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122 ++ D Q L S+++ +P + E L + Sbjct: 9 IILSDTLQSIGLQSMLTDYFPPVEISHYPTFEAFSTSGNDTFDYYFTNAALFVLYADFFL 68 Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 P + D GL ++ + E Q ++ + Sbjct: 69 PR---RSKTMVLIDETEGEGGLSATSHITIKASQEVIIE----QLEQLFTGENNSISSDN 121 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + EL+ RE + L I +G T+ EIA L IS NTV ++ +I K KT SG YA+ Sbjct: 122 NKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFYAIM 181 Query: 243 NNIV 246 N I+ Sbjct: 182 NGII 185 >gi|78046491|ref|YP_362666.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926045|ref|ZP_08187409.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78034921|emb|CAJ22566.1| putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543571|gb|EGD14990.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 235 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%) Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217 LL A A K K + L+ RE + L+ + G T+ +A LGIS TV Sbjct: 146 LLPAMVAEPAKPIATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ I++K K R+ A YAV++ + Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 1/135 (0%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V +L + D L + + G + P L ++ + + Sbjct: 102 VVRSLEAGASGYLLKDYSNEELIEHILEVANGGSPISPLIARQLLSKM-QTPRTVDAEYP 160 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K+ K +T RE++ + ++ G T+ EIA +GIS +TV ++ I +K Sbjct: 161 QNKAEQDESQKACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVH 220 Query: 232 TRSGAIAYAVRNNIV 246 +RS A+ A ++ Sbjct: 221 SRSEAVYEATLLGLL 235 >gi|50954584|ref|YP_061872.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951066|gb|AAT88767.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 225 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 6/134 (4%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + D R LT + + G + + + R L L A Sbjct: 96 FGGLRAGASGFLLKDARPDDLTAAIRAVAAGDAAVSGR---VTRAMLE---LFADRLPTT 149 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +S LT RE E L I++G T+ EI ++ +TV ++ ++ K + Sbjct: 150 TESAAPGGDPAAALTPREREILLAIADGLTNGEIGATFHLTESTVKTHVGRVLSKLHLRD 209 Query: 233 RSGAIAYAVRNNIV 246 R A+ +A N ++ Sbjct: 210 RVHAVIFAYDNGLI 223 >gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 208 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 12/164 (7%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---D 136 P +V + + D +L V T ++ + C Sbjct: 48 PDVVVMDLRMPGVDGITATSRILADRPATRVLVLTTFGDDDHLYPALTAGACGFLLKDAP 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + G+ ++ L + + L+ RE E L Sbjct: 108 PTDLLDGIRRAAAGDSPFSQEVLRRL------VHRAVHARTGSPEPVGGLSAREQEVLRL 161 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 ++EG ++ EIA L I TV +I S+M KT + R A Sbjct: 162 VAEGLSNAEIAERLHIGVTTVKTHITSLMTKTGSPNRVRLALLA 205 >gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 16/126 (12%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + R + V + G LL P + D+L Sbjct: 98 GASGYLLKQVRGQDVVNAVREVAAGRSLLDPVSTARVLDKLRHP---------------- 141 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + LT RE + L I +G ++ EIA L ++ TV NY+ S++ K + R+ A A Sbjct: 142 PTDELAALTDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAA 201 Query: 239 YAVRNN 244 + R Sbjct: 202 WIARRG 207 >gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1070 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT REVE L ++ G T+ +IA L IS TV +++SI K +RS A YA+ ++ Sbjct: 1009 DLTEREVEVLRSLATGLTNAQIAEQLVISPRTVQAHLSSIYNKIGVSSRSAATRYALEHH 1068 Query: 245 I 245 + Sbjct: 1069 L 1069 >gi|289706045|ref|ZP_06502418.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557247|gb|EFD50565.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 227 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 8/175 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D L+ + + + K + R + T + + P L Sbjct: 52 DVVLMDMQMPLMDGVEATRRIKDTHPAIR---VLAITTFTSEDYLVPALRAGAGGYLLKD 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREV 191 +G + +G +L LLA+ + + S +LT RE+ Sbjct: 109 AEPPAILGAIQAVHRGESVLSPA-VATKLLASIERDRPTVGPTSVQPGSPDGSDLTEREL 167 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G+++ EIA L +S +TV + IM K + R I A + +V Sbjct: 168 GVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLV 222 >gi|254445229|ref|ZP_05058705.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259537|gb|EDY83845.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 225 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A+ ++ + D + L+ RE + L ++E ++ EIA L IS TV+N+ +I Sbjct: 142 MASVMRSLILNPDAASS-EIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNI 200 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 MRK + YA+++ ++ Sbjct: 201 MRKLNLHDVAALTRYAIKHELI 222 >gi|120401374|ref|YP_951203.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119954192|gb|ABM11197.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length = 392 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 D L E GL A + D LT RE + + G ++ EIA L I+ Sbjct: 302 DELCESGLDTPRGAEADRCGDTDGQTGRPPVTLTEREADVFDLMVTGASNQEIADRLVIT 361 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 TV +++ I+RK R+ AIA+A+ Sbjct: 362 EGTVKSHVKHILRKYGAVNRAQAIAWALNGG 392 >gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] Length = 207 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 17/215 (7%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + E + F ++ E+ L I P ++ + + + Sbjct: 1 MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57 Query: 98 -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + + P+ N + Y D + +G Sbjct: 58 ETIEALNK-KQSHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 I+L+ + E + Y+ + V ++ LT +E+ L I+ G + EIA +G Sbjct: 116 EILLQPNIMEK--IVNYKRKEVYADKV---EENNLTEKELFVLKAIARGNKNKEIAFDMG 170 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV Y+ +I K +RS A+A ++ ++ Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205 >gi|227112572|ref|ZP_03826228.1| virulence regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 204 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R+ E L I+ G ++ +I+ L IS TV +++ SI R+ + R+ A Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|220913336|ref|YP_002488645.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860214|gb|ACL40556.1| transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 552 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE + L ++ G+ + IAV L +S TV ++++I K +R+ A YA + Sbjct: 490 PLTPREEQVLQLVASGQGNRAIAVGLFLSEKTVARHVSNIFLKLGLTSRTAATRYAFEHG 549 Query: 245 I 245 + Sbjct: 550 L 550 >gi|146280078|ref|YP_001170235.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC 17025] gi|145558319|gb|ABP72930.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC 17025] Length = 243 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G D LT R+ E L + G ++ EIA L IS TV ++ +MRK R+ Sbjct: 165 AAEGLDMPLTDRQNEVLRSLGAGASNKEIARQLSISEATVKIHVRHLMRKYGVSNRTQVA 224 Query: 238 AYAVRN 243 A+R Sbjct: 225 ILAMRK 230 >gi|333026198|ref|ZP_08454262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746050|gb|EGJ76491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + +L P V T + ++ R Sbjct: 52 MDLQLGPGIDGVEATRRLLALPAPPRVLVLTTYDTDADVTRAVNAGATGYLLKAERPE-- 109 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 LF + R +A ++ ELT RE + L +S+G + Sbjct: 110 --ELFAAIHAAAQGRTALSPPVAHRVLAHLRAP------RPELTPRERDILAQLSQGLGN 161 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L IS TV ++ + +K TR+GA+A A ++ Sbjct: 162 RDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 204 >gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37] gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37] Length = 217 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 15/161 (9%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 DL+R + S V+ V L +N L + +I +GL Sbjct: 62 DLLRQIRDSRA-ATICVVTTVLGDDASVVGALSAGAQGYLLKENPASLLAHQLRQIHLGL 120 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 L P +A F LT RE E L IS G + Sbjct: 121 PALSPS--------------IARRIMEHFSLTGPSAPPTHGLTDRETEVLALISRGLRNS 166 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E+A LG++ TV +YI SI K +R+ A +A R + Sbjct: 167 EVARELGLAETTVASYIKSIYGKLGISSRAEASWHATRLGL 207 >gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905] gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905] Length = 203 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + LT RE + LT ++EGKT+ EIA L +S TV NYI++I+ K R AIA Sbjct: 139 ENPLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIAR 195 >gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actG] gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actF] Length = 222 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 2/141 (1%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F A + + D A I + L+ ++ L Sbjct: 76 PRIITLTTFDLDEYVYNALAAGADGFLLKDADPAEILRAVHLVAAGSAMLHPAAARR--L 133 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + Y + LT RE + L ++EG+T+ +IA LG+ +TV +++ I Sbjct: 134 IDRYHHANGPRATHAQARTAPLTPRERDVLALLAEGETNADIARRLGMRESTVKAHVSRI 193 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 + R A A + Sbjct: 194 LTALEVTNRVQAALVARDAGL 214 >gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281564|gb|ABR89974.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 213 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT R++E L + +G + EIA LG++ TV ++++++ R+ A A R + Sbjct: 149 LTPRQMEVLRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQATVVARRAGL 208 Query: 246 V 246 + Sbjct: 209 L 209 >gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 211 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%) Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 N Y F +A + L ++ R + + + F + G +LT Sbjct: 101 NGYLLKDFVLAELLQALEMVLHGERFLSPK---------IREMSRFSDAEGTSGSGTQLT 151 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 R+ E L ++ G+T+ EIA LGIS TV + + +M + +G +A++ +V Sbjct: 152 ARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVHDVTGLTRFALQTGVV 210 >gi|311894159|dbj|BAJ26567.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 233 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + +++G+T+ EI L IS TV ++A++ K T+ R A+A R Sbjct: 168 PLTEREWEIVELVAQGRTNAEIGAGLFISAGTVKTHLANVQGKLGTRNRVAIAAWAWRTG 227 Query: 245 IV 246 + Sbjct: 228 RI 229 >gi|289642549|ref|ZP_06474692.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507637|gb|EFD28593.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 407 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 I R IG + A H G D LT RE E L + G T+ IA L I+ Sbjct: 313 IDLSRYAGIGAMPGDGARPAPVATAHTGGD--LTARESEVLELMVAGATNSVIAETLVIA 370 Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238 TV +++ I+RK RS AIA Sbjct: 371 EETVKSHVKHILRKLGAVNRSQAIA 395 >gi|284045808|ref|YP_003396148.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950029|gb|ADB52773.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 302 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ELT RE++ L ++ G+T+ EIA L IS TV +++ +++RK R+ A+A Sbjct: 242 ELTARELQVLELLATGRTNAEIATALMISEGTVKHHVKNLLRKLNASNRADAVAR 296 >gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] Length = 207 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 17/215 (7%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + E + F ++ E+ L I P ++ + + + Sbjct: 1 MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57 Query: 98 -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + + P+ N + Y D + +G Sbjct: 58 ETIEALNK-KQNHTPIIILTTYNEDELMLQGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 I+L+ + E + Y+ + V ++ LT +E+ L I+ G + EIA +G Sbjct: 116 EILLQPNIMEK--IVNYKRKEVYADKV---EENNLTEKELFVLKAIARGNKNKEIAFDMG 170 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV Y+ +I K +RS A+A ++ ++ Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205 >gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 8/211 (3%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ D + + +L E + D L + D VR Sbjct: 1 MIRLLLADDQALFRQGLASLLELEEDLSVVGQAQDGRDAILLTQTLQPDVILMDVRMPIC 60 Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + + QR + V T E+ T Y + +++ + +L Sbjct: 61 DGVEATREIHQRFPWIRILVLTTFDEDEYIWTSLQAGALGYLLKSTPASQLAAAIRMLHD 120 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + ++A + K+ H + L+ RE++ L I +GK++ EI+ I Sbjct: 121 GHFQLGPT--IAPKVIAQLRPPPLKNEQNHLER---LSDRELDVLNLIGQGKSNREISQI 175 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L ++ TV NY++ ++ + R+ A +A Sbjct: 176 LHLTEGTVKNYVSQLLGSLGVRDRTQAALWA 206 >gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces kasugaensis] Length = 215 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 11/164 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 DL + + P V T + ++ R Sbjct: 61 MDLQLGTGMDGVATTRRLTAGPGATPHVLVLTTYDTDADITRAIEAGATGYLLKAERPE- 119 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 LF + + R +A+ +S LT RE + L +++G Sbjct: 120 ---ELFSAIQAAAQGRTTLSAPVASRVMARMRSP------RPSLTDRERDILAQLAQGLG 170 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +IA L IS TV ++ I K TR+GA+A A ++ Sbjct: 171 NRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 214 >gi|186681434|ref|YP_001864630.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463886|gb|ACC79687.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + LT RE++ L I G + EIA L ++ TV ++ I+ K R+ A A+R Sbjct: 176 YPLTHREMDVLELIVAGCDNAEIAKRLYLTVGTVKTHVRGILNKLCVADRTQAAVRALRA 235 Query: 244 NIV 246 +V Sbjct: 236 GLV 238 >gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 916 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E LT + EG ++ EIA L ++ NTV ++ ++ K A R I A+ +V Sbjct: 857 TKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVNNRVKLITTAIHLGLV 916 >gi|302558223|ref|ZP_07310565.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475841|gb|EFL38934.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 1026 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 52/148 (35%), Gaps = 10/148 (6%) Query: 104 RPTELFCPVFHTLPENITPPAGMDNRY-----CSLTFDVARIRIGLMLLFPKGRIILRDR 158 RP +L F + AG D R L VA L + R R Sbjct: 870 RPYDLARVRFRLAEALLASGAGDDERARATELLRLVTAVADHLGAAPLARSAASLAQRAR 929 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L I + LT RE + L ++ G T+ IA L IS T + Sbjct: 930 LALIPA-----TREPAAACADPADALGLTSRERDVLRLVAAGHTNRRIAEELFISPKTAS 984 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++++I+ K R A A A R +V Sbjct: 985 VHVSNILAKLGVSGRGEAAAVAHRVGLV 1012 >gi|299137741|ref|ZP_07030922.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600382|gb|EFI56539.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 212 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L + GK++ EIA L I TV ++++ I+ + R+ A+ ++ Sbjct: 149 HLSQREQEVLQLLFAGKSNREIAEELAIKEATVKSHVSVILMRLNVSDRTQAVVEGLKRG 208 Query: 245 IV 246 +V Sbjct: 209 LV 210 >gi|297203477|ref|ZP_06920874.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] gi|297148424|gb|EFH28981.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] Length = 220 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 13/136 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D L + + G LL P + R + E Sbjct: 92 VFEALRAGASGFLLKDTEPADLLQAIEVVARGEALLSP---AVTRTLIGEFAS------- 141 Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + D E LT RE E + G T++EIA + IS T +I+ M K Sbjct: 142 --RPPDRSTAPGLECLTRREREVTALAARGLTNEEIAEHMVISPLTAKTHISRAMTKLGA 199 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ + +A + +V Sbjct: 200 RDRAQLVVFAYESGLV 215 >gi|296389853|ref|ZP_06879328.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 685 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 + L Q + ++ +++ RE E L ++ G ++ +IA + +S T+ ++ Sbjct: 598 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 657 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++ K K+R+ A+ ++ Sbjct: 658 HNLFAKLGVKSRTQAVLKGKSLGLL 682 >gi|149187161|ref|ZP_01865459.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838697|gb|EDL55636.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 227 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 8/178 (4%) Query: 72 QKLDSIVSSDWPFDLVR--CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129 + D +V D F ++ + Y+ +++ + P N+ + + Sbjct: 47 RSRDDVVERDVRFIIIDYAAIGHGTATHYHEIIESMDNSIKEILLNAPSNLEHAEMLKWQ 106 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELT 187 F + L+ F IL LW L N ++ + +LT Sbjct: 107 NLVGVFYASDTIETLVSGF---ERILAGELWMSRKLVYEYVNFYRRRQCSKTSPYYTKLT 163 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + + + +G ++ EIA L +S NTV ++ + +K K R A+ + V+NNI Sbjct: 164 KREQQIIKLLGDGASNTEIADTLFVSENTVKAHLHNAFKKIKVKNRLQALLW-VKNNI 220 >gi|120404725|ref|YP_954554.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119957543|gb|ABM14548.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 539 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ LT I+ G T+ ++A L +S TV+ ++A+I K TR+ A +A + + Sbjct: 475 LTRRELDVLTRIARGATNRQVAEQLHLSDKTVSRHLANIYAKLGVSTRTAAANWAFQQGV 534 Query: 246 V 246 + Sbjct: 535 L 535 >gi|83643319|ref|YP_431754.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631362|gb|ABC27329.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 207 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 15/182 (8%) Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 D E + D +V D + + +E + R + H E ++ Sbjct: 39 AIDAVAEHQPD-VVMMDVSMPRMNGIDATEYMAQHFPDTR---VLILSMHNNKEYVSQIL 94 Query: 125 -GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 Y V + + ++ G I + A +F + Sbjct: 95 HKGAKGYILKDVSVDEMIRAIRTVYEGGTYIS----------SGASAALFSQPQLRGESS 144 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE L ++EGK++ IA L IS TV + +I K + + YA+++ Sbjct: 145 ASLTHREASVLKKVAEGKSNKAIAEELAISVRTVETHRQNIKAKLGLSSTAELTKYAIKH 204 Query: 244 NI 245 + Sbjct: 205 GL 206 >gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L + D ++ V + G L + R L E+ Sbjct: 92 VFGALEAGASGFLLKDADPDAIVAAVRSVAAGHGTLDTS---LTRRVLREV-----VTRR 143 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + G + LT RE++ L ++EG +++EIA L + +TV +++A +M K K Sbjct: 144 RTQPVTAARGSEL-LTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLARMMPKLGVK 202 Query: 232 TRSGAIAYAVRNNIV 246 +R A +A ++ ++ Sbjct: 203 SRLQAAVWAYQSGLI 217 >gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 203 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + LT RE + LT ++EGKT+ EIA L +S TV NYI++I+ K R AIA Sbjct: 139 ENPLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIAR 195 >gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] Length = 222 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGIS 213 D L E + A +F DV +D F LT RE L ++++G ++ E+A + IS Sbjct: 116 DELLETAITVASGKMVFPFMDVRELQDDPLFMLTKREKIILQFLADGSSNKELAESMKIS 175 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 NTV +++++ K K RS AI++ + Sbjct: 176 INTVKFHLSNLYEKLGVKNRSQAISFFYSRRL 207 >gi|302869712|ref|YP_003838349.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503806|ref|YP_004082693.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302572571|gb|ADL48773.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410425|gb|ADU08542.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 215 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 GL+ + LT RE E L +++G + +IA L +S TV N++ Sbjct: 130 AGLVLGEYRRLAAEPPAPHDDAPRLTERETEVLRLVAKGLSYKQIADRLSLSHRTVQNHV 189 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 + + K R YA+ + Sbjct: 190 QNTLGKLQLHNRVELTRYAIERGL 213 >gi|302529365|ref|ZP_07281707.1| response regulatory protein [Streptomyces sp. AA4] gi|302438260|gb|EFL10076.1| response regulatory protein [Streptomyces sp. AA4] Length = 211 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE + L +++G + EIA L IS TV ++ I K TR+GA+A Sbjct: 144 RAPRPALTDRERDILEQLAQGLGNREIARRLFISEATVKTHLGRIYEKLGVDTRAGAVAV 203 Query: 240 AVRNNIV 246 A ++ Sbjct: 204 AKEQRLL 210 >gi|257054552|ref|YP_003132384.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584424|gb|ACU95557.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + +M + G + RL +L Sbjct: 92 VFLALSVSDAAEDVIAVIRAGARGYVTKTISSRELVSAVMRVA-DGDAVFSPRLAGF-VL 149 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ D LT RE + L ++ G EIA L IS TV +++S++ Sbjct: 150 DAFADRPGSEPINDPDLDL-LTPRERDVLRLLARGYAYKEIASELFISIKTVETHVSSVL 208 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RKT R +A +V Sbjct: 209 RKTQLSNRYELSRWASDRRLV 229 >gi|227327824|ref|ZP_03831848.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|290454909|emb|CBJ57167.1| homologue of Erwinia virulence regulator [Pectobacterium carotovorum] Length = 204 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +L+ R+ E L I+ G ++ +I+ L IS TV +++ SI R+ + R+ A Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|322391432|ref|ZP_08064901.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145515|gb|EFX40907.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 228 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 68/174 (39%), Gaps = 6/174 (3%) Query: 78 VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 + P ++ + + D V + ++ + T ++ + + + Y Sbjct: 44 IPHSHPDLILMDIRMPGMDGVLATKEVKEHYPDIKIIILTTFDDDEFIYSALKYGASGYL 103 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + ++ G +I D ++ + + A S V +L+ E Sbjct: 104 LKGASTEELYEAIKVVHQGGAMINPDIASKVFQIFSQMAKSNFSIAVDEDNVKDLSTTEW 163 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + I G+++ EIA L +S TV NY+++I+ K + R+ ++V+ + Sbjct: 164 RIIQEIGYGESNKEIAAKLFLSEGTVRNYLSTILSKLNLRDRTQLAIWSVQTGV 217 >gi|312200594|ref|YP_004020655.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231930|gb|ADP84785.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 5/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ +A + L + F G + + Sbjct: 49 DVVLLDIRMPVLDGLAALREITADPALHGTRVVMVTTFELDEYVFEALRGGASGFVLKDS 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + A + + ++ ++ + +A + LT RE E + Sbjct: 109 EPADLLRAIRVVAAGESLLSPAVTRRV-----IEAFARRPVGPGAPDLDGLTDREREVMG 163 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++DEIA L IS T +++ +M K + R+ A + +V Sbjct: 164 LVGHGLSNDEIAARLVISPATARTHVSRVMVKLGARDRAQLAVLANQAGLV 214 >gi|256380943|ref|YP_003104603.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925246|gb|ACU40757.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 234 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 8/133 (6%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 H P+ + R + +L + R+ L L + Sbjct: 104 HRTPKYVRGALAAGVRGLVPRTAEPAEVVEAILRAHRERVHLDPTLAPLAA--------G 155 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S G L+ RE E L I++G + +A L +S TV ++ +I+RK + R Sbjct: 156 FSPGADSGTRRALSRREYEVLQLIADGLENQSVADALYVSVETVRTHVKNILRKLRARDR 215 Query: 234 SGAIAYAVRNNIV 246 + A++ A + ++ Sbjct: 216 THAVSLAYQAGLL 228 >gi|229526554|ref|ZP_04415958.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] gi|229336712|gb|EEO01730.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] Length = 250 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89 L++++ + + + G + + ++ I + DW FD Sbjct: 20 LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 78 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141 + + KY + + E P F T ++ P G + Sbjct: 79 IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 138 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199 G + L K E+ LL+ Y + + L+ RE E L+ + Sbjct: 139 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 198 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G+ +IA+ LG+S T+ N++ + K T + I A++ Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243 >gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 200 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 20/165 (12%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCS 132 +V P + + + + + + F N Y Sbjct: 42 LVKLHMPDICIMDIEMPIMNGLEAAEEIKGYGCKVMILTTFARPGYFERAVKAGANAYLL 101 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + + RI + + E + G++ LT RE E Sbjct: 102 KDSPSEELAASIRSIMAGRRIYASELVDE----------------AYSGEENPLTEREKE 145 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L I++GK + EIA L I+ TV NYI+ I+ K R AI Sbjct: 146 VLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAI 190 >gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] Length = 218 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + S KD + + ++ L L P + S V +L Sbjct: 51 IETSSKDAWGKLKEQLVNLRIKCDIILFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110 Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 R++L D+LW + + + + + +LT RE ++ +S+G Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSKGS 170 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + EIA L IS +TV ++ S RKT + R +++A +N Sbjct: 171 KNKEIAEDLSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212 >gi|310821461|ref|YP_003953819.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394533|gb|ADO71992.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca DW4/3-1] Length = 218 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 12/162 (7%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147 L+ V +R + + + + + + + Y +IR + + Sbjct: 61 GLNGIQVTQRVKRRVSNVEILILTSFEDEQKVYEAIQAGASGYLVKRVGPEKIRSSIREV 120 Query: 148 FPKG---RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 G I+ R W Y ++ + LT E E L ++++G ++ Sbjct: 121 MEGGTVLEPIIAKRFW------NYFHSLQAKPAGKPENPWGLTPAEFEVLRYVAKGLSNA 174 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+ ++ + R TV +++ I RK + A+ A++ +V Sbjct: 175 EVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAGVV 216 >gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 364 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 F LT RE E L W+S GKT+ +I ILG++ TVN ++ + K +TR Sbjct: 295 SALAAQFSLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 350 >gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 97 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 38/59 (64%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 12 LSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQWG 70 >gi|302539071|ref|ZP_07291413.1| two component system response regulator [Streptomyces sp. C] gi|302447966|gb|EFL19782.1| two component system response regulator [Streptomyces sp. C] Length = 230 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 2/157 (1%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 M E + + ++I G R + + Sbjct: 74 MDGIETTRRLTGEHPEVAVVVLTTFADDDSILGALGAGARGYLTKNAGRQDITRAIRAAA 133 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208 G+ +L DR + LLA + E LT RE E L I +G + IA Sbjct: 134 AGQSVL-DREVQARLLATVKTQAPPPGGPLPLPLPEDLTRREREVLALIGQGLPNRGIAE 192 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L IS TV +I ++ K + R+ A+ A+ + + Sbjct: 193 QLFISEATVKTHINNLFAKAGIRDRADAVRRAIASGL 229 >gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185] gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185] Length = 581 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 88/239 (36%), Gaps = 16/239 (6%) Query: 17 EQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73 E+ +P ++++ L R++ +D + L + + +V + Sbjct: 349 EEGMLVTCTIPRQTEIKNGLIRLLIVDDQPFVRESLRTLLDRYEDLN--VVGLAEDGNEA 406 Query: 74 LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMD 127 +D + P ++ + + D + Q+ + +F T + + Sbjct: 407 ID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQDTEQAVESLRNGA 465 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 + + + + + + L+ G +I + +I + + K +ELT Sbjct: 466 DGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAAVYELT 521 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L +++G IA L +S TV NY ++ K + A+ A+ I+ Sbjct: 522 AREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEIGII 580 >gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 238 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 2/106 (1%) Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISE 199 + L+L+ +L LW L + ++ ++ + LT RE+E + + Sbjct: 117 QDNLLLICKGIAKLLEGDLWMSRNLMTRLIDFYRRQQLNAYRPVCGLTHRELEIIGLLGT 176 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 G ++ EIA L +S +TV +++ +I RK R A+ +A R N+ Sbjct: 177 GASNTEIADQLFVSEHTVKSHLYNIFRKIKVHNRIQAMNWA-RQNL 221 >gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae BGR1] gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1] Length = 273 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 81/239 (33%), Gaps = 29/239 (12%) Query: 11 VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70 V+ + T LL ++P+ + + A EY + L V Sbjct: 36 VIGGGYRLAAAARERGDTPESLLDAVLPIARRLGF-----AYLEYF-FNTSLPVSAP--- 86 Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPE--NITP 122 +V ++P R E + ++ R P+ F + P+ + Sbjct: 87 ----RKLVIGNFPPAWSRREGADEVSEANPIIARCKSSMMPMAWDEASFASHPDFRAMLA 142 Query: 123 PAGMDNRYCSLTFDVAR-------IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 AG+ + L D A R LW ++ + M + Sbjct: 143 RAGIGGGWSQLVRDGAGNWGVLTVARTACRYAGAMEVEAEAQLLWLAHIVHSRLCQMLRP 202 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + LT E L W +GKTS E+A IL +S TVN ++ +I+ K T ++ Sbjct: 203 P-MTGANRVLLTEMEKTILRWTVDGKTSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260 >gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917] gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917] Length = 250 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 12/188 (6%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 +Q L +V SD L + + L +F + + Y Sbjct: 62 QQLLPDLVISDVMMPRCDGYGLLSRMREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 121 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAA--------YQANMFKSYDV 178 FD + + + + +L + ++G +A ++ Sbjct: 122 IPKPFDPEELVARVRNVVRRQDRLLAEAARFADADVGQMARQINEIRSMLSGAAAEAVAA 181 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 T RE L ++EG + EIA L S V Y++ + KT T +R+ + Sbjct: 182 AEAPQLSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVR 241 Query: 239 YAVRNNIV 246 +A+++ +V Sbjct: 242 FALQHRLV 249 >gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family [Actinobacillus succinogenes 130Z] Length = 209 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 LL+ + + ++ D F++V + P + L Sbjct: 8 LLIDDHPLMRRGIKQLIELDEIFEVVGDAGNGNDGISLALQLEPDLIVLDLNMKGLSGLD 67 Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQAN 171 T A G+D R LT A+ I ++ +L+D L ++ +A + Sbjct: 68 TLKALRNEGVDARIVILTVSDAKNDIFALIDAGADGYLLKDTEPDVLLVQLKRIAGGEVV 127 Query: 172 MFKS-----YDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + S + H KD + LT RE++ L I+ G ++ +IA L IS TV +I ++ Sbjct: 128 LSDSIKDLLLERHASKDPIYSLTDREMDVLQQIATGLSNKQIAGKLFISEETVKVHIRNL 187 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK +R A + + Sbjct: 188 LRKLNVHSRVAATVLYLEHK 207 >gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM 22836] Length = 245 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +L + F ++ K +LT RE+ L I EG S EI+ L IS +TVN + Sbjct: 161 HILNVKENTFFPIENLLSSKASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQ 220 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K A+ YA ++ Sbjct: 221 RILEKLDVNNSMEAVKYASALGLI 244 >gi|315605040|ref|ZP_07880094.1| two component system response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313319|gb|EFU61382.1| two component system response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 216 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 9/156 (5%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 +E ++ L V + + + Y + + + + + Sbjct: 68 AEVASSCRDVEGLNFLALSVSDSAEDVVQVIRAGARGYVTKSISTPDLVEAIGRVAAGDA 127 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210 LA + + F + +V + L+ RE E + I+ G T E+A L Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSAADTELDLLSAREQEVMRLIARGYTYKEVAHDL 180 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++++++RK R+ +A++ +IV Sbjct: 181 FISIKTVETHVSAVLRKLQLSNRNELTRWAMQRHIV 216 >gi|302524105|ref|ZP_07276447.1| two-component system response regulator [Streptomyces sp. AA4] gi|302433000|gb|EFL04816.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + I Y + T + ++ + G + RL G + Sbjct: 85 VFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELVRAVVRVA-DGDAVFSPRL--AGFV 141 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A+ S ++ + LT RE + L ++ G EIA L IS TV +++S++ Sbjct: 142 LDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVL 201 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RKT R +A +V Sbjct: 202 RKTQLSNRYELSRWASDRRLV 222 >gi|284992805|ref|YP_003411359.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066050|gb|ADB76988.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 218 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 4/150 (2%) Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 L L V + I Y + + +R + + G ++ RL Sbjct: 70 AELPSVRWLALSVSDAAEDVIAVIRAGARGYVTKSISGPDLRDAVARVA-DGDVVFSPRL 128 Query: 160 WEIGL--LAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNT 216 L AA + + D +L + RE E + ++ G T EI L IS T Sbjct: 129 AGFVLDAFAATTPSAPQPEDPATDPGLDLLSAREREVMQLLARGYTYREIGSRLFISVKT 188 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++ ++++RK R+ +A N ++ Sbjct: 189 VESHASNVLRKLQLSNRNELTRWAATNRLL 218 >gi|229820935|ref|YP_002882461.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566848|gb|ACQ80699.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 220 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L+ I+ G ++ EIA L ++ TV ++++I+ K + R A+ ++ + Sbjct: 156 LTSREREVLSLIARGLSNAEIAGRLFVTEGTVKGHVSAILAKLGLRDRVQAVIFSYECGL 215 Query: 246 V 246 V Sbjct: 216 V 216 >gi|261418524|ref|YP_003252206.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765338|ref|YP_004130839.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374981|gb|ACX77724.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110204|gb|ADU92696.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 221 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 7/155 (4%) Query: 87 VRCMALSEKDKYYNVLQRPT--ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 VR ++ + + ++ L F + Y D RIR + Sbjct: 65 VRMPNMNGVEATKLLCEQTKTKPLILTTFDDDEYILDAIQYGAKGYFLKNTDPERIREAI 124 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ ++ + +I +A D T RE++ + I++G ++ Sbjct: 125 KAVYHGQVVMQEIVMDKIKSNLKEEAEAAPKIDKSL-----FTERELDIMALIAKGLSNK 179 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 EIA L +S TV NYI SI+ KT + R+ Y Sbjct: 180 EIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214 >gi|153825393|ref|ZP_01978060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|255746365|ref|ZP_05420312.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262158280|ref|ZP_06029397.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262169155|ref|ZP_06036848.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262192074|ref|ZP_06050237.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|149740939|gb|EDM55016.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|255736119|gb|EET91517.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262022436|gb|EEY41144.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262029962|gb|EEY48609.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262032056|gb|EEY50631.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|327485870|gb|AEA80276.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 239 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89 L++++ + + + G + + ++ I + DW FD Sbjct: 9 LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 67 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141 + + KY + + E P F T ++ P G + Sbjct: 68 IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 127 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199 G + L K E+ LL+ Y + + L+ RE E L+ + Sbjct: 128 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 187 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G+ +IA+ LG+S T+ N++ + K T + I A++ Sbjct: 188 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 232 >gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 210 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 14/218 (6%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVRCM 90 R+ D + + AL + G ++ D Q LD++V D +R Sbjct: 3 ARRIALADDQILVRAGLRALLQQQGVE--VVCEADDGQ-SLLDALVINTVDVVLSDIRMP 59 Query: 91 ALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 L + R T + + + + L + Sbjct: 60 GLDGIQALQQLRDRGDRTPVLLLTTFDDSDLLLRATEAGAQGFLLKDAAPEDLREAIERV 119 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 G +L+ ++ + + REV L ++ G ++ EIA Sbjct: 120 ASGETLLQP-------VSTDPVRARYQFRDQQPPRETFSEREVAILRLLAGGYSNKEIAR 172 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ TV NY+++I+ K T+ R+ A+ A+ ++ Sbjct: 173 TLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 220 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 5/173 (2%) Query: 76 SIVSSDWPFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 ++ P ++ + + S + ++QR + + + ++ + Sbjct: 43 RVIEETQPQIVLMDIRMPGESGIEATRQIVQRFPQTRVIILTSYSDDELVMRAIHAGASG 102 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 A + L + R L + M + + + +D L+ RE+ Sbjct: 103 YVLKQADNDVLLDAIQTVARGESLLDPATTTRLLHFVREMERKAEQNAFRD--LSERELS 160 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +++GKT+ EI L +S TV N+++ I+ K R YAV ++I Sbjct: 161 VLAELAKGKTNAEIGRTLHLSEKTVRNHVSVILEKLHLSNRVELATYAVEHHI 213 >gi|307327309|ref|ZP_07606496.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886988|gb|EFN17987.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 212 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 19/196 (9%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112 E VG + DL E+ + D +R L ++ R + Sbjct: 31 IEIVGEAGDGRAALDLV-ERYDPDVALVD-----LRMPVLDGVATTTEIVARYPRTRVLI 84 Query: 113 FHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 T + G++ L + + +G +L R+ E A Sbjct: 85 LTTYDTDTEIERGVEAGAIGYLLKDTTREQLVDAIHAAARGETVLAPRVAEK-----LVA 139 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + LT RE E L +++G T+ EI L I+ TV ++ + K Sbjct: 140 RMRRPV------QEPLTDRETEVLGAVADGLTNAEIGRRLVIAEATVKTHLLRLFAKLDV 193 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+ A+ ++ Sbjct: 194 NDRTRAVVVAMERGLL 209 >gi|296130400|ref|YP_003637650.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022215|gb|ADG75451.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 229 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 14/231 (6%) Query: 17 EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76 + P R+ ++ +D M + ++ + AS + + + Sbjct: 8 PTAVTLSDRDPDRAPDRVSVVVVDDNAVIRMGLRSIVD---ASTTMRWVGEAADGVEAVQ 64 Query: 77 IVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE--NITPPAGMDNRYCS 132 +V P ++ + + +D + ++ + + + PE AG + Sbjct: 65 VVREKVPDVVLLDVRMPRRDGVQVASEVRAWSRVLMLTYSDAPEVVRAALDAGANGYLVH 124 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 F + ++ + ++ A + + D L+ R+ E Sbjct: 125 GQFTGPDLERAVLAVASGAMLLSAPA-------AEALRRVPTAAPPGPRSDLGLSERQQE 177 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 + ++ G+T+ IA L +S TV N++ I + TR+ A++ + Sbjct: 178 IMELVAAGRTNGAIAQELYLSEKTVKNHVNHIFARLGVATRAEAVSVWLHR 228 >gi|257791938|ref|YP_003182544.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475835|gb|ACV56155.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 258 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E I+EG ++ +I + L IS NTV ++ I +K R +A R Sbjct: 194 LTAREQEIAALIAEGLSNQQIGLRLFISENTVKKHVKGIFQKMGVSNRHQLMAELYRT 251 >gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16] gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 239 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 15/226 (6%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF---LLVRWDLFQEQKLD-SIVSSDWP- 83 R LL + L GA F + L + D ++V + P Sbjct: 20 RGQLLLVGHESPMLTRLCGILTVLDYAAGALSFAGTIAQACALVDQGPFDMALVDTSLPD 79 Query: 84 ---FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 +L+RC+ D V+ P + L T + LT + Sbjct: 80 GSGIELIRCLRERAPDLPIVVIASPG-TDTEIVGALIAGATGYLLKERDDIELTVCLRGA 138 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 G + P + RL + L A L+ RE E L +I++G Sbjct: 139 LRGGTPIDPS----IAKRL--LTTLVPKAAPAETRLSPTGSVKPLLSARETEILVFINKG 192 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ EIA L +SR T+ +++ +I +K A KTR+ AI A ++ Sbjct: 193 STNREIADALSLSRLTIESHVKNIYKKLAVKTRTQAIFEARAYGVL 238 >gi|66045285|ref|YP_235126.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255992|gb|AAY37088.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 87 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 22 VQLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81 Query: 244 NIV 246 ++ Sbjct: 82 GVI 84 >gi|284045278|ref|YP_003395618.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949499|gb|ADB52243.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 519 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L ++ G ++ E+A L I+ T N++ + K +R+ A YA+R+ + Sbjct: 458 LTARELEVLVLVARGASAREVAGELVIAEKTARNHVECVYGKLGVSSRAEATLYAMRHGL 517 Query: 246 V 246 V Sbjct: 518 V 518 >gi|226310881|ref|YP_002770775.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226093829|dbj|BAH42271.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 602 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 13/244 (5%) Query: 13 NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRW 66 E T V + +D + R++ +D + ++ E VG + Sbjct: 362 RGEGTLVTCLVPRMVESADEIIRLVIVDDHSFIRESLRSILEGQRDLRVVGLAEDGAQAV 421 Query: 67 DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126 +L +E + D ++ ++ ++ + L F + Sbjct: 422 ELCEELEPDLVLMD---LEMPNMDGITATKRIKEKWPGIRILVLSTFQDTEKAKEIMRSG 478 Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKD- 183 + Y + + + + L+ G +I +D ++ G Q ++ + + Sbjct: 479 ADGYLLKSIESRELAETIRLVHRGGTMIAQDLFHKMLDGQPVNGQEDLLVAPKQSEKDEN 538 Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE E L +++G IA L +S TV NY +++ K + R A+ Sbjct: 539 AYGLTKREQEILQMLAQGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNRDDAVQKGKM 598 Query: 243 NNIV 246 +V Sbjct: 599 EGLV 602 >gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514] Length = 122 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 37/78 (47%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +A F+ H + EL+ RE E L ++ G EIA L IS TVN YI + Sbjct: 33 IARRVVQSFQQTRPHASEADELSNREQEVLDLLARGYLYKEIAENLNISVATVNTYIRRV 92 Query: 225 MRKTATKTRSGAIAYAVR 242 K ++R+ A+A R Sbjct: 93 YEKLHVRSRAQAVAKYTR 110 >gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 75 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + + KT+ EIA L +S TV N+I+++M+K K RS A+ VR Sbjct: 13 LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVRLGE 72 Query: 246 V 246 + Sbjct: 73 I 73 >gi|254390125|ref|ZP_05005345.1| two component response regulator MppU [Streptomyces clavuligerus ATCC 27064] gi|294817119|ref|ZP_06775761.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326445989|ref|ZP_08220723.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703832|gb|EDY49644.1| two component response regulator MppU [Streptomyces clavuligerus ATCC 27064] gi|294321934|gb|EFG04069.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 209 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 13/163 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPT------ELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P +V + + D V +R + + T ++ + + C F Sbjct: 49 PDLVVADIRMPGVDG-LEVTRRLAGPDADDPVRVLIVTTFDQDDHVRTALRDGACG--FL 105 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + R GL+ + + D L L A D LT RE E Sbjct: 106 LKRSGPGLL-IEGVRAALAGDVLISPQLTARLLQRATAPDDRRTS---PLTAREEEIARL 161 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +++G T+ EI L IS T ++A++ K + R G A+ Sbjct: 162 VADGLTNAEIGEALVISPGTAKTHVANVQTKLGARNRVGIAAW 204 >gi|149915179|ref|ZP_01903707.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b] gi|149810900|gb|EDM70739.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b] Length = 201 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 11/171 (6%) Query: 77 IVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 I + P DLV ++ D + + CPV A R + F Sbjct: 41 IETEQGPHDLVLLDYSMPGMDTLAGLARMKEHAGCPVAILSGTASADVARRALRAGAAGF 100 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + ML+ ++ I LA +A+ D LT RE++ L Sbjct: 101 -LPKTLGPDMLIAAVHEMLGGGIYRPIEFLAEAEASPL---------DVALTPRELDVLK 150 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EGK + EIA L I TV ++ ++ RK + R+ A +V Sbjct: 151 GLTEGKANKEIARELDIQEVTVKLHVKTLSRKLQARNRTHAAMLGRDLGLV 201 >gi|325923039|ref|ZP_08184737.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546480|gb|EGD17636.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 235 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 12/138 (8%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLA-AYQANMF 173 + PP D R + G++ + P L LL A A Sbjct: 96 LMPPRPADMREAKVPIHALGTTHGMLCVAWNDSRPAPGNDDVQALQAFALLLPAMVAEPA 155 Query: 174 KSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 K K + L+ RE + L+ + G T+ +A LGIS TV ++ I++K Sbjct: 156 KPLATRRRKPVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQK 215 Query: 228 TATKTRSGAIAYAVRNNI 245 K R+ A YAV + Sbjct: 216 LEVKDRTQAAVYAVHAGL 233 >gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 15/232 (6%) Query: 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88 R+ LL ++ L + + +G + + +++ S +P Sbjct: 16 RAALLHQLNGLRDADAVIRSLQPAVALLGFDYCAYALRAAIPITRFNTLCWSTYPEPWCE 75 Query: 89 CMALSEKDKYYNVLQRPTELFCPVFHTLPE-------NITPPAGMDNRYCSLTFDVARIR 141 + VLQ PV + G+++ + D Sbjct: 76 HYRVHGYLAIDPVLQFGQRCVKPVLWSGIATADARFWADARQHGLNHGWSHTIRD-HTGI 134 Query: 142 IGLMLLFPKGRIILRDRLW--EIGLL-----AAYQANMFKSYDVHWGKDFELTGREVECL 194 G L + I D L E ++ A + + V L E + L Sbjct: 135 FGTFSLVRRATPITEDELAVSEPEMIWLSQRAHGSISTLMAEKVLPDAATRLKEVERQTL 194 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 W +EGKT+ E+A IL ++ VN +I + + K ++ A+ A ++ Sbjct: 195 HWTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAALLGLI 246 >gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 207 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 17/215 (7%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97 +D + + E + F ++ E+ L I P ++ + + + Sbjct: 1 MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57 Query: 98 -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 L + + P+ N + Y D + +G Sbjct: 58 ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 I+L+ + E + Y+ + V ++ LT +E+ L I+ G + EIA +G Sbjct: 116 EILLQPNIMEK--IVNYKRKEVYADKV---EENNLTEKELFVLKAIARGNKNKEIAFDMG 170 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV Y+ +I K +RS A+A ++ ++ Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205 >gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68] gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus suis ST3] gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus suis ST3] Length = 200 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +LA + + D+ + LT E + L ++EG ++ EIA L +S TV NY+ S Sbjct: 117 VLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTS 176 Query: 224 IMRKTATKTRSGAIAYAVRNN 244 I+ K + R+ A+ A Sbjct: 177 ILSKLGAENRTAAVRIAQEKG 197 >gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 90 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 39/67 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + Sbjct: 4 SKFETPASLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELV 63 Query: 238 AYAVRNN 244 +A++ Sbjct: 64 RWALQWG 70 >gi|325916868|ref|ZP_08179116.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536913|gb|EGD08661.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 235 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217 LL A A K K + L+ RE + L+ + G T+ +A LGIS TV Sbjct: 146 LLPAMVAEPAKPIATRRRKPMQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ I++K K R+ A YAV+ + Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQAGL 233 >gi|312868682|ref|ZP_07728875.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3] gi|311095796|gb|EFQ54047.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3] Length = 210 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 DV+ L+ RE E ++ G ++ EI+ L IS TV + A+I RK +R Sbjct: 139 DVNLKGYSVLSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVEL 198 Query: 237 IAYAVRNNIV 246 + YA+ ++++ Sbjct: 199 VRYAIHHHLI 208 >gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + ++ D +T RE E L ++EG +S EIA +L IS TV Sbjct: 141 LYPGAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAEMLVISVKTVE 200 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + A++++K + R YA+R ++ Sbjct: 201 RHRANLLQKLGLRDRLELTRYAIRAGLI 228 >gi|295695307|ref|YP_003588545.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410909|gb|ADG05401.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 75 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I+++M+K K RS A+ VR Sbjct: 13 LTAREREVFELLVQDKTTREIAEQLYISEKTVRNHISNVMKKLNVKGRSQAVVELVRMG 71 >gi|315505622|ref|YP_004084509.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412241|gb|ADU10358.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 979 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG T+ EI L IS T+ +++ I K +TR A A +RN Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977 >gi|269795459|ref|YP_003314914.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097644|gb|ACZ22080.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 222 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 15/138 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-FPKGRIILRDRLWEIGL--LAAY 168 VF L + D + V ++ G + R ILR+ + L +AA+ Sbjct: 92 VFGALEAGASGFLLKDADPDVIVHAVRQVAAGHGTIDQTLTRRILREFVDRRSLRPVAAH 151 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 +A+ LT RE E L +++G ++DEIA L + +TV +++A ++ K Sbjct: 152 RADGL------------LTEREREILLLLAQGMSNDEIARELVVEVSTVKSHLARMLPKL 199 Query: 229 ATKTRSGAIAYAVRNNIV 246 ++R A+ +A +N +V Sbjct: 200 GVRSRLQAVVWAYQNRVV 217 >gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 204 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 12/133 (9%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---------YQANMFK 174 G+ ++ L+ +++ IL++ E L A Y + + K Sbjct: 71 LGLGTKFILLSSSISQEDFKRASKLGVDGYILKEAFVEDILYAISIISRGMKYYYSEVLK 130 Query: 175 SYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 +LT RE + LT I +G +++EIA +L IS +TV ++++I+ K Sbjct: 131 QNGQLDQNSMINQLTEREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSN 190 Query: 233 RSGAIAYAVRNNI 245 R+ +A+ V N + Sbjct: 191 RTQ-VAFMVNNKL 202 >gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] Length = 209 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 19/154 (12%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 D +R + E D VL E + + + D+ L ++ + G Sbjct: 67 DTLRSLRAKEVDARIVVLTVSDEQ-SDIVALMDAGVDGYLLKDSDTAELVENIQKAARGE 125 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 M+L R L + + LA LT RE + L WI+ G ++ Sbjct: 126 MVLSDAVRKHLLEHRPQADPLAT------------------LTDRERDVLQWIATGMSNK 167 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 +IA L IS TV +I +++RK +R A Sbjct: 168 QIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|239990355|ref|ZP_04711019.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447364|ref|ZP_06586754.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350311|gb|EFE77215.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 315 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 P + L ++ + + + + + L+ REVE + I+ G ++ +IA Sbjct: 212 PAHTAEPSESLSQLQPVVGESSVSGGTVPTPNRQQYGLSSREVEVMDLIASGMSNQQIAA 271 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 IS TV N+I I K + TRS AIA+ Sbjct: 272 TCFISEKTVKNHINRIFTKLHSATRSEAIAH 302 >gi|258653619|ref|YP_003202775.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556844|gb|ACV79786.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Nakamurella multipartita DSM 44233] Length = 901 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 38/77 (49%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 A + ++ D LT RE++ L + G+T+ +IA L ++ NTV Y+ +I K Sbjct: 823 AALVAQAGDDPETPSSGLTARELDILRMVGSGRTNQQIATSLTVTVNTVKWYLKNIYTKL 882 Query: 229 ATKTRSGAIAYAVRNNI 245 R+ A A A R + Sbjct: 883 GATNRTEATAIARREGL 899 >gi|213964996|ref|ZP_03393195.1| two component transcriptional regulator, LuxR family [Corynebacterium amycolatum SK46] gi|213952532|gb|EEB63915.1| two component transcriptional regulator, LuxR family [Corynebacterium amycolatum SK46] Length = 235 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 10/172 (5%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + R +A P L F + + + + + Sbjct: 64 EATRQIAQGAPSGGAARASSPKVLVLTTFREEDLVLGALEAGAAGFLLKDSNPRELLSAI 123 Query: 145 MLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWG------KDFELTGREVECL 194 M + +I L + A + + H + T RE E L Sbjct: 124 MRIHRGEGVIDPKVTPMVLRHVSPRAPHSGRPASASSTHGAGSDPTDAGTQFTPREQEIL 183 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + +G ++DEIA L ++ TV ++ +++ KT +++R + +A +N ++ Sbjct: 184 NLVCQGLSNDEIARRLVVATTTVKTHVKALLTKTGSRSRVDLVIWAAKNGLL 235 >gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 232 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + ++ D +T RE E L ++EG +S EIA +L IS TV Sbjct: 143 LYPGAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAEMLVISVKTVE 202 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + A++++K + R YA+R ++ Sbjct: 203 RHRANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|297584895|ref|YP_003700675.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143352|gb|ADI00110.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 219 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 18/224 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + + + A + ++ D E ++ ++ P ++ ++ Sbjct: 1 MKTRIMLVDDHPVFRSGLKHILC-TEADYHVIAEAD-DGESAIEMAAEAN-PDIIIMDIS 57 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL-----ML 146 + D + R + P L D + + D L Sbjct: 58 MPGLDGI--EVTREIKRKIPDIRIL----MLTMYADEAFLKESLDAGASGYVLKRAVDTE 111 Query: 147 LFPKGRIILRDRLWEIGLL--AAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKT 202 L ++++ + L Y AN + V + EL+ RE E L +I+ G T Sbjct: 112 LVHAVKLVMNGEHYIYPTLIPKLYHANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYT 171 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI+ L IS TV+ Y +M K +K +S + YA+++NI+ Sbjct: 172 QKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVRYALKHNII 215 >gi|169349619|ref|ZP_02866557.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552] gi|169293694|gb|EDS75827.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552] Length = 227 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 66/165 (40%), Gaps = 6/165 (3%) Query: 86 LVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVAR 139 ++ + + D V ++ + T ++ + + + Y + Sbjct: 54 ILMDIRMPRMDGVVCTKAVKEQYPNTKIIILTTFDDDDFVFSALKYGASGYLLKGVGMDE 113 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 + ++ ++ G +I D ++ + + + S V E++ E + + + Sbjct: 114 LYQSILTVYRGGGMINPDIATKVFGMFSKMSQNNYSIQVDETNIDEISKPEWKVIQQVGY 173 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G ++ EIA L +S TV NY++SI+ K + R+ +AV+ Sbjct: 174 GFSNKEIAQKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 218 >gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 231 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 14/132 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + R +L V ++ G LL P + RL E Sbjct: 113 FTAIMAGAAGYVLKQIRGTALVDAVRQVAAGKSLLDPAVTPRVLVRLRE----------- 161 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D LT +E L I+EG T+ +IA + ++ TV NY++S++ K ++ Sbjct: 162 GPAEDERLS---GLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLGLES 218 Query: 233 RSGAIAYAVRNN 244 R+ A +A R N Sbjct: 219 RTQAAVFATRLN 230 >gi|15967032|ref|NP_387385.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15076305|emb|CAC47858.1| Putative transcription regulator [Sinorhizobium meliloti 1021] Length = 184 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 8/130 (6%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSY 176 G+ + Y R +G + + + + L +A + Sbjct: 55 HGLFDGYI-FPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMA 113 Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 ++ + ++T RE+E L ++++G TS++I +L IS +TV+ Y+ I K K R Sbjct: 114 ELVSRVEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHV 173 Query: 237 IAYAVRNNIV 246 +A A R ++ Sbjct: 174 VAIAFRLGLI 183 >gi|163800211|ref|ZP_02194112.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159175654|gb|EDP60448.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 222 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEG 200 G+ L +L+ +W + + + K LT RE + +T +S G Sbjct: 112 GISKLQAGIGKVLQGDMWFSRKFSQQYITHLRRHGRPTSKPLREILTKREQQIITLLSSG 171 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ++ +IA L +S NTV ++ +I +K K R A+ +A N Sbjct: 172 ASNQQIADQLLVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214 >gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 213 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 18/182 (9%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PA 124 L+QE + D +V + + + + + V +++ P Sbjct: 45 LYQEHRPDVVVMD------ITMPGIGGLEAIDRIRAKDEHARILVLSAHEDSVHPKRVLN 98 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 Y + + + + + + Q + Sbjct: 99 AGAMGYLTKRSAAEELIKAIHTVAGGKMYLEAN---------VAQQMAIQQISGQQNPVD 149 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E +++GKT++EIA IL +S TV ++ +I +K + A+R+ Sbjct: 150 VLSDREFEVFMALAKGKTTNEIADILSLSPRTVGTHLYNIKQKLNASNSAEIALIAMRSG 209 Query: 245 IV 246 ++ Sbjct: 210 LI 211 >gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 199 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 42/77 (54%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 ++A + + D+ + + LT RE + L I++GKT+ EIA L ++ TV NY++ Sbjct: 115 AIMAGRKVYAPELIDMAYEEGNPLTTREEQVLKLIADGKTTKEIAGQLYLTNGTVRNYVS 174 Query: 223 SIMRKTATKTRSGAIAY 239 +IM K R AI+ Sbjct: 175 TIMDKLNVSNRIEAISR 191 >gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 11/133 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D L V G L+ P LLA + + Sbjct: 113 VYAALRAGARGFLLKDAGPDLLAQAVHAAACGDALIAPN---------VTARLLATFAGS 163 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE + L ++ G+T+ EIA L IS +TV +IAS+M K + Sbjct: 164 GPAPVPAQPVE--ALTDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGAR 221 Query: 232 TRSGAIAYAVRNN 244 R +A + Sbjct: 222 NRVEIALWAYQTG 234 >gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] Length = 74 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 12 LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|293375961|ref|ZP_06622221.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325841957|ref|ZP_08167534.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|292645398|gb|EFF63448.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325489790|gb|EGC92145.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 214 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 11/127 (8%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178 + D+ + + + +G ++ P+ LL ++ D Sbjct: 98 GASGYLLKDSSHEVIYEGIKSAIMGNVIFHPE---------VATQLLNTQTTSIK--SDA 146 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 + + + L+ +E+ + I+ G T+ EIA L +S T+ N+I +I+ K + R+ Sbjct: 147 QFYEQYRLSEKELMIIREIATGLTNKEIAAKLFLSEGTIKNHITNILFKLELRDRTQIAI 206 Query: 239 YAVRNNI 245 +A +N + Sbjct: 207 FAFKNGL 213 >gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 261 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 21/186 (11%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130 + + ++ S++P ++ S +++ P F N D+ Sbjct: 52 RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAAQGVETDDFLK 111 Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174 TF D + + L L + + R+ E L + + K Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQKDFDQRIREKAADIQMSLIRFHDRLIK 171 Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + H +L+ RE L W++ GK+ EIA I IS TV +++++ K Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231 Query: 231 KTRSGA 236 +T A Sbjct: 232 RTAKQA 237 >gi|302867979|ref|YP_003836616.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302570838|gb|ADL47040.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 979 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E L ++EG T+ EI L IS T+ +++ I K +TR A A +RN Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977 >gi|113477455|ref|YP_723516.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168503|gb|ABG53043.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 230 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 21/212 (9%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107 +++Y+ S +L+V+ + Q+ IV P ++ +A+ + D Y V RP+ Sbjct: 17 CISDYLEVSGYLVVKAEDGQQAFD--IVEKSEPHLIITDIAMPKMDGYELVKRVRARPSF 74 Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162 PV E + + Y F++ + + L + +I + Sbjct: 75 RLLPVIFLTAHISTQERVKGYQLGCDIYLPKPFELVELGAVVRSLLDRYALIAKASPRSN 134 Query: 163 GLLAAYQA----NMFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILG 211 L Q+ N +S D LT RE + L+ + G ++ +I L Sbjct: 135 YLPINSQSLVTENPSRSDDSESISQSIIVNSQISLTSREKQVLSLLLNGLSNVQIGDRLH 194 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +S T+ Y++ ++RKT TK R+ + + + N Sbjct: 195 LSPRTIEKYVSGLLRKTDTKNRAELVRFTMEN 226 >gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 12/168 (7%) Query: 83 PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132 P L+ + + +D + +++ R L F A + + Sbjct: 34 PDVLLMDIRMPRRDGLWALVELGRRSLLGPGRSRVLMLTTFDLDAYVDDALAAGASGFLL 93 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + + + I + + + D + +LT RE++ Sbjct: 94 KNSSYEELTGAVRAAVAGHSALSPAVTQRI--IEGHLRGRRRPSDQDLARLRDLTEREID 151 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L I +G ++ EIA L +S +TV+ +++ ++ KT ++R+ A A Sbjct: 152 VLRLIRDGLSNAEIAERLVVSLHTVSTHVSRVLTKTGCQSRAQAAVLA 199 >gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 232 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + ++ D +T RE E L ++EG +S EIA +L IS TV Sbjct: 143 LYPGAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAELLVISVKTVE 202 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + A++++K + R YA+R ++ Sbjct: 203 RHRANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|229505968|ref|ZP_04395477.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229605500|ref|YP_002876204.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] gi|229356319|gb|EEO21237.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229371986|gb|ACQ62408.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] Length = 250 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89 L++++ + + + G + + ++ I + DW FD Sbjct: 20 LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 78 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141 + + KY + + E P F T ++ P G + Sbjct: 79 IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 138 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199 G + L K E+ LL+ Y + + L+ RE E L+ + Sbjct: 139 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 198 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G+ +IA+ LG+S T+ N++ + K T + I A++ Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243 >gi|172037420|ref|YP_001803921.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698874|gb|ACB51855.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 244 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%) Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215 ++ + + + A A+ K D LT +E+E L I G + +IA L ++ Sbjct: 158 QEVINDTRAIEALDADTQKMVDSS-----SLTPKELEVLELIVAGCNNAQIAEALFVTVG 212 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV ++ SI+ K R+ A A+R+ +V Sbjct: 213 TVKTHVRSILNKLCANDRTQAAVRALRSGLV 243 >gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] Length = 247 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 44/95 (46%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +++L + ++ L+ N+ + L+ RE E L W S GKT EIA+I Sbjct: 148 QMLLIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITN 207 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV +I ++++K AI V I+ Sbjct: 208 ITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEII 242 >gi|50954652|ref|YP_061940.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951134|gb|AAT88835.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 203 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 ++L+ + D+L + ++ +V +LT RE E + G T+ Sbjct: 99 ILLVEAVRAAVSGDQLISPSVTVRLLRHLSPRPEVTTAAGPQLTPRERETAALVGRGLTN 158 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EI V L I+ TV ++++S+ K + R A+A RN ++ Sbjct: 159 AEICVELVIALGTVKSHLSSLQLKLGVRNRVEIAAWAWRNGLL 201 >gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10] gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10] gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis] gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004] gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038] gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 247 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 44/95 (46%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +++L + ++ L+ N+ + L+ RE E L W S GKT EIA+I Sbjct: 148 QMLLIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITN 207 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ TV +I ++++K AI V I+ Sbjct: 208 ITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEII 242 >gi|119358450|ref|YP_913094.1| two component LuxR family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119355799|gb|ABL66670.1| two component transcriptional regulator, LuxR family [Chlorobium phaeobacteroides DSM 266] Length = 203 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT REVE L + G TS +IA L IS TV + IM K +T +G YA Sbjct: 140 EGQLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGYARE 199 Query: 243 NNIV 246 + ++ Sbjct: 200 HGLI 203 >gi|333023628|ref|ZP_08451692.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332743480|gb|EGJ73921.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 290 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTS 203 L DRL + L A + G LT REVE L ++EG T+ Sbjct: 187 GAHLRGLADRLTDPALRAELLGVCARLAAADAGPPRDTQAPPLTPREVEVLVIVAEGATN 246 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +A LG+ TV Y+ + MRK +TR A+A A R +V Sbjct: 247 AAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289 >gi|324999601|ref|ZP_08120713.1| regulatory protein LuxR [Pseudonocardia sp. P1] Length = 245 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 4/158 (2%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 D +L+R + V + + + Y D I L + Sbjct: 88 PGLDLVRALLERCRGVRILVLTGCRDRESMMRTVRLGVHGYLRKGADTPEIVRALRSVLR 147 Query: 150 KGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 + L + A + K LT RE + L ++ G ++ EI Sbjct: 148 GEGVFDPGTTSAGPLQVLREPAPAAPAAGADLCKTSLLTDRENQVLRLLAVGLSNREIGG 207 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV ++ ++ K + R+ + A R IV Sbjct: 208 RLRISEATVKFHVRNLRDKLEVRRRTEIVYTAARQGIV 245 >gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 236 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 12/181 (6%) Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125 + ++ +D ++ + D +A+ + R PV AG Sbjct: 59 TEALRDSAIDLVLVDNPILD--DLLAIITSFRRGRPALRVV-TLGPVVGMDVIERIIAAG 115 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 Y + T +R+ + ++ R L + L +S + + Sbjct: 116 AK-GYLTYTSGPGDLRMAIEVVRDGSVWAPRKVLSRLMDL--------RSPEEKERPELR 166 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE + L ++ G T+ +IA L I T ++ ++RK R G YAV I Sbjct: 167 FTPREKQVLELLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPNRVGLALYAVEKQI 226 Query: 246 V 246 V Sbjct: 227 V 227 >gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 211 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 72/218 (33%), Gaps = 16/218 (7%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93 R+ +D + L E G + L+V E L+ V P ++ + L Sbjct: 4 PRLFLVDDHAVVRSGIRLLLEAHGGA--LVVGEADSGEAALER-VPELAPDIVLLDLTLP 60 Query: 94 EKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 + L H PE + + + + Sbjct: 61 GMNGIETARSLKARLPSVRLIALSMHEDPEYVRGFLEAGGNGYVPKSALETQLLDAIRAV 120 Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 +G RL + LA + + LT RE L I++G T EIA Sbjct: 121 SRGEYYAPARL--LAELARDLSESGP------YRHVRLTERERSVLARIAQGCTYKEIAE 172 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LGIS TV Y K KTR+ + YA+++ ++ Sbjct: 173 ELGISDKTVATYRERAAEKLGLKTRAELVRYALQHGLI 210 >gi|302544370|ref|ZP_07296712.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461988|gb|EFL25081.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 232 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 10/170 (5%) Query: 87 VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR L + + ++ P L F + + + + Sbjct: 56 VRMPKLDGVEATRRICEQEGSPRVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLTA 115 Query: 144 LMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196 + + ++ + L + + E LT RE E + Sbjct: 116 IRAVHSGDAVVAPSTTRRLLNRFAPMLPGTAGGGIGGRSGAAGRPELERLTEREREVMML 175 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +++G ++ EIA L +S TV ++ I+ K + R + A +V Sbjct: 176 VAQGLSNGEIAGRLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 225 >gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 218 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + D L V G L+ P+ + L L G Sbjct: 92 VHAALQGGASGFLLKDAGPTLLIEAVRAAARGDALVSPQVTVRL---LRHFG-------- 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K + ELTGRE++ + + G T+ EI L +S +TV ++AS+ +K + Sbjct: 141 -RKQRPDRSTRAKELTGRELDVVRAAARGLTNSEIGAELYLSLSTVKTHLASVQQKLGVR 199 Query: 232 TRSGAIAYAVRNNI 245 R A+A RN I Sbjct: 200 NRVEIAAWAWRNGI 213 >gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402] Length = 201 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 +L RE + L +++G + EIA L +S TV NY++SI+ K + R+ + Y Sbjct: 143 DLNDRETDILELVADGLNNKEIANRLSLSEGTVRNYVSSILEKLNLRDRTQLVVY 197 >gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum] gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 245 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 ++ Y+ + D + RE E L W S GKT EIA+IL I TV + Sbjct: 155 HAETISLYREMIRNKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILDIKTGTVKFH 214 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 I ++++K AI + ++ Sbjct: 215 IGNVVKKLGVLNAKHAIRLGIELQLI 240 >gi|326381697|ref|ZP_08203391.1| putative two component system response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199944|gb|EGD57124.1| putative two component system response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 213 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S + G +++ LT RE E L + G ++ EIA +S TV +++ I+ K + + R Sbjct: 141 SRNADPGPEYDTLTAREREILVRAASGLSNAEIASAEFLSEATVKTHVSRILAKLSLRDR 200 Query: 234 SGAIAYAVRNNIV 246 + YA + +V Sbjct: 201 VQLVVYAYEHGLV 213 >gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] Length = 237 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 17/200 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 ++V + + ++ D F +V +P L + Sbjct: 36 MIVDDHPLMRRGIRQLLELDSSFTVVAEANSGSDAIVKAAQYQPDVILLDLNMKGMTGLD 95 Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------------GL 164 T A G+D R LT AR + M+ +L+D EI + Sbjct: 96 TLKALRNEGIDARVIILTVSDARSDVYAMIDAGADGYLLKDSEPEILLDNIRHAAKGEKV 155 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + S ELT RE++ L ++ G ++ ++A L IS TV +I ++ Sbjct: 156 FSNEVVIYLSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 215 Query: 225 MRKTATKTRSGAIAYAVRNN 244 +RK ++R A + N Sbjct: 216 LRKLNVRSRVAATIMFLENK 235 >gi|302533866|ref|ZP_07286208.1| two component transcriptional regulator [Streptomyces sp. C] gi|302442761|gb|EFL14577.1| two component transcriptional regulator [Streptomyces sp. C] Length = 218 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 8/185 (4%) Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENI 120 D+ + + V+ P L+ + + + D + P + F Sbjct: 32 ADVVDGEAALAAVAEHRPDVLLLDIRMPKLDGLEVTRRLSGQDTPRIVIVTTFDLDEYVH 91 Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 G + + A + + ++ L A + Sbjct: 92 AALHGGASGFLLKDASPAMLVEAVRAAAAGDALVSPAITVR---LLRDMAPRTPAARTAR 148 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE + + ++ G T+ EIA L +S +TV ++A++ K + R A+A Sbjct: 149 RPAEPLTERERDVVRCLARGLTNAEIAAELYVSLSTVKTHLANVQAKLDARNRVEIAAWA 208 Query: 241 VRNNI 245 + + Sbjct: 209 WESGL 213 >gi|289668036|ref|ZP_06489111.1| transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 923 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R A+A A+ + Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRENALAQALERGL 908 Query: 246 V 246 + Sbjct: 909 L 909 >gi|239943901|ref|ZP_04695838.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 260 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208 P + L ++ + + + + + L+ REVE + I+ G ++ +IA Sbjct: 157 PAHTAEPSESLSQLQPVVGESSVSGGTVPTPNRQQYGLSSREVEVMDLIASGMSNQQIAA 216 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 IS TV N+I I K + TRS AIA+ Sbjct: 217 TCFISEKTVKNHINRIFTKLHSATRSEAIAH 247 >gi|222106363|ref|YP_002547154.1| two component response regulator [Agrobacterium vitis S4] gi|221737542|gb|ACM38438.1| two component response regulator [Agrobacterium vitis S4] Length = 896 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 2/159 (1%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 PF +V L + ++ L + A + + + + Sbjct: 735 PFRIVEARILRNAGQIDAAAEKLRTLAAGARQEGRILMARQAEALAKVIAPAHEAEETQP 794 Query: 143 GLMLLFP-KGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEG 200 + R ILRD + + + + G ELT RE + L + G Sbjct: 795 ADLEDDTMATRRILRDFISPVAASPNPGGGQRQEARLSLRGSLTELTQREDDVLQLMRWG 854 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ++ EIA L I+ NTV ++ +I K K+R+ A+ Sbjct: 855 LSNSEIATRLDINLNTVKSHAKNIFAKLGVKSRTQAVLK 893 >gi|297580055|ref|ZP_06941982.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535701|gb|EFH74535.1| transcriptional regulator [Vibrio cholerae RC385] Length = 253 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 13/225 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89 L++++ + + G + + ++ I + DW FD Sbjct: 23 LISQLEESHSFSKVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 81 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141 + + KY + + E P F T ++ P G + Sbjct: 82 IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 141 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199 G + L K E+ LL+ Y + + L+ RE E L+ + Sbjct: 142 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 201 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G+ +IA+ LG+S T+ N++ + K T + I A++ Sbjct: 202 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246 >gi|134097815|ref|YP_001103476.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005549|ref|ZP_06563522.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910438|emb|CAM00551.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 5/156 (3%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L+ ++ + + P + F + + + + + + + Sbjct: 65 GLTAIERIAKLPEAPAVVALTTFDADQYVLRALRAGASGFLVKSTPPEDLIGLVRVAADG 124 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 ++ + + +A + S V +LT RE E L + EG ++ +IA L Sbjct: 125 HTVLSLEATRRLVAASADEHGQRASALVR-----DLTEREREVLACLGEGLSNAQIAERL 179 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S TV +++ M K R+ A A +V Sbjct: 180 FLSEATVKGHVSRTMTKLRCTNRTQAGLLAYDAGLV 215 >gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis KT71] gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis KT71] Length = 222 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Query: 155 LRDRLWEIGLL---AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 RD L ++ L+ Y A + LTGRE + L I GK++ EIA L Sbjct: 125 ARDMLAKLPLILMGERYVAPELTDIIRKGQQGETLTGRERQVLNMIVMGKSNKEIAQELN 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV + S+M K + + +A A+++ ++ Sbjct: 185 ISPKTVEKHRGSVMLKLEVHSVAQLMARALKDGLI 219 >gi|332662977|ref|YP_004445765.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331791|gb|AEE48892.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 231 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 8/118 (6%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187 Y + + RI ++ + G +A A F+ ++ DF LT Sbjct: 119 GYALKSDSLERIETAILDVHHGGGYFSP-------AIAGKVARFFQEKELKADPDFCNLT 171 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE+E L ++ GK EIA + IS V++++ + K ++S AI A+ + Sbjct: 172 ARELEVLKYLVNGKRYQEIANAMFISYEGVHSHVKKVYEKLHVNSKSEAIIKAIDAKL 229 >gi|312883206|ref|ZP_07742935.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369129|gb|EFP96652.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 217 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R + LL Y++ + +LT RE++ L + G ++ +IA + IS T Sbjct: 129 PRKVDAQLLFYYRSVVETQTAPAT---VDLTAREIQILRCLMIGASNTQIAEDMFISEFT 185 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243 V +++ I +K + + R A A+A ++ Sbjct: 186 VKSHLQKIFKKLSVRNRVQAAAWAKQH 212 >gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 255 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAV 208 R L GL+A QA+ + D+ DF LT RE + L I G + IA Sbjct: 150 RRPAPRGLAGGGLVAQKQAS-LEDIDLERKIDFGQDLLTMRETQILDLICVGMQNKIIAD 208 Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 LG+S NTV ++ +I +K + R+ A A R Sbjct: 209 RLGLSENTVKVHVRNIYKKMNVRNRTEAAARYFR 242 >gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] Length = 214 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 16/163 (9%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143 + + +L+R + + H PE I+ Y I+ Sbjct: 58 LNMPGMGGLSATEIILERLPQTRILILSMHDSPEYISTALSHGAKGYILKDVPTDEIKQA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + R L ++ D LTGRE L +++GK++ Sbjct: 118 IDAVMRGERY----------LCTGASGSLEPKGDSTREA---LTGREQTILLELAQGKSN 164 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+A L IS TV + +I RK + +G YA+ + ++ Sbjct: 165 KEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207 >gi|297561045|ref|YP_003680019.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845493|gb|ADH67513.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 247 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 3/171 (1%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + + + + L F + Sbjct: 64 DVVLMDIRMPGLDGIGATRRICADPATAGVRVLILTTFDLDEYVYAALRAGAAGFLLKDT 123 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 +R+ + ++ ++ L + A + + +T REVE L Sbjct: 124 PPSRVLDAITVVAAGDALLAPSVTRR---LISEFARLPEPGRPPARALDGVTDREVEVLG 180 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I+ G ++ E+A L +S TV +I + K + R+ + A +V Sbjct: 181 LIARGLSNTELAEHLHLSLATVKTHIGRLRAKLGARDRAQLVITAYETGLV 231 >gi|225028039|ref|ZP_03717231.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353] gi|224954639|gb|EEG35848.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353] Length = 223 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 +R + + V ++ +++ V T ++ + + Y + + Sbjct: 55 IRMPGIDGVECTRLVKEKYPDIYIIVLTTFDDDEYIFGALKYGASGYLLKGISMKNLAEA 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I + +I L + A + V ELT E + I G ++ Sbjct: 115 IRTVVSGKAMINPEITDKIVKLFNHMAQSSYAIQVDNELTEELTKTEWRVIQKIGCGMSN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 EIA L +S TV NY++S++ K + R+ +AV+ Sbjct: 175 KEIASELALSEGTVRNYLSSVLSKLELRDRTQLAIWAVQTG 215 >gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083] gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083] Length = 215 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%) Query: 133 LTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 +T V IG +L + + +RD G L+A A+ + L+ R Sbjct: 100 ITRAVEAGAIGYLLKAEQPEELFSAIRDAASGRGALSAPVADRLLTR--LRSPRPALSAR 157 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E L ++ G + EIA L IS TV ++ I K +TR+GA+A A ++ Sbjct: 158 EHEILAQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLL 214 >gi|163754837|ref|ZP_02161958.1| two-component response regulator [Kordia algicida OT-1] gi|161324904|gb|EDP96232.1| two-component response regulator [Kordia algicida OT-1] Length = 225 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 N + + + + + K L+++L EI L K + L Sbjct: 101 ANAFIPKDIEPEELVTVIETVHKKEHYFLKEQL-EIMRLQL----SKKVPEFTVESKDAL 155 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE + L + + T+ EI L IS TV + +++ KT K +G + YA++N IV Sbjct: 156 TSRETDILKLLCQQFTTKEIGEQLFISPKTVETHKTNLLLKTGVKNTAGLVIYAIQNKIV 215 >gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis KIM 10] gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10] gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 220 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%) Query: 59 SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116 SH +L+ D + + ++ D FD+V +P L + Sbjct: 15 SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAAKFQPDVILLDLNMKGM 74 Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170 T A G D R LT AR + M+ +L+D EI L QA Sbjct: 75 SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 134 Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 S ELT RE++ L ++ G ++ ++A L IS TV + Sbjct: 135 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 194 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 I +++RK ++R A + N Sbjct: 195 IRNLLRKLNVRSRVAATIMYLENK 218 >gi|332708630|ref|ZP_08428603.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352586|gb|EGJ32153.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 211 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF +L + + + G L P I Q N Sbjct: 90 VFQSLQAGALGYLLKSTPAPKVAAAIRSLHQGYSQLGPT-----------IAPKVFSQLN 138 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + RE++ L + +GK++ EIA L ++ T+ N++ +I + + Sbjct: 139 NTQPEREKTDYHAQFNQRELQILKLLGQGKSNREIAAALNLTEGTIKNHLTNIFCELDVR 198 Query: 232 TRSGAIAYAVRN 243 R+ A +A ++ Sbjct: 199 DRTQAALWAHQH 210 >gi|325286932|ref|YP_004262722.1| LuxR family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322386|gb|ADY29851.1| two component transcriptional regulator, LuxR family [Cellulophaga lytica DSM 7489] Length = 215 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 15/169 (8%) Query: 84 FDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMDN---RYCSLTFDV 137 L+ + + E D V +R T L V + + N Y + Sbjct: 54 HLLITDLTMPEVDGIELNNIVKERFTSLKTLVVSMHIDGTMIDTLIRNNVDGYVPKNAEK 113 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 + + + + + + AY MF S K+ LT RE E L I Sbjct: 114 EELLEAIRSIVKGEKYFSSE------IKKAYTDAMFAS---KKEKEISLTNREKEVLKLI 164 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +E T+ EIA L +S++T+ +Y +++ K K +G +A++ ++ Sbjct: 165 AEEYTTQEIADELFLSKHTIESYRKNLISKLNVKNLAGLTKHAIKIGLL 213 >gi|302387360|ref|YP_003823182.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] gi|302197988|gb|ADL05559.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] Length = 222 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 75/190 (39%), Gaps = 6/190 (3%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE 118 + V Q++ V + P ++ + + + D + + ++ + T + Sbjct: 27 MTVTDVAADGQEVIRCVRKNVPDVILMDVRMPKMDGVQCTKIIKESYPQIKIIILTTFDD 86 Query: 119 NITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 + + + Y + + + ++ +I D ++ + A + Sbjct: 87 DEYVYNALKYGASGYMLKGVSMDELVGAITTVYNGWAMINPDIAAKVLRFFSQMAQADDT 146 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V ELT E + + + +G ++ EIA L +S TV NY+++I+ K + R+ Sbjct: 147 ISVREKDMEELTRTEWKIIAQVEKGASNKEIAKNLNLSEGTVRNYLSTILNKLDLRDRTQ 206 Query: 236 AIAYAVRNNI 245 +AV+ N+ Sbjct: 207 LAIWAVQTNV 216 >gi|302522670|ref|ZP_07275012.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] gi|318057801|ref|ZP_07976524.1| response regulator [Streptomyces sp. SA3_actG] gi|302431565|gb|EFL03381.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] Length = 290 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTS 203 L DRL + L A + G LT REVE L ++EG T+ Sbjct: 187 GAHLRGLADRLTDPALRAELLGVCARLAAADAGPPRGAQAPPLTPREVEVLVIVAEGATN 246 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +A LG+ TV Y+ + MRK +TR A+A A R +V Sbjct: 247 AAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289 >gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614] gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614] Length = 214 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ REVE L I+ G+++ EIA L +S T N+++SI+ K TR+ A+A A + Sbjct: 153 LSAREVEVLDLIAAGRSNAEIAASLVVSPKTAKNHVSSILTKLGC-TRTEAVARARDAGL 211 >gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 211 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 6/136 (4%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + VF + + A + Y +++ + + G + ++ + Sbjct: 82 VMLTVFEDTEKIFSALAAGASGYLLKRMPPSKLLDAIREVNEGGSPMSAP--IARKVVES 139 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 QA D EL+ RE E L ++EG +IA LG+S +TV NYI I K Sbjct: 140 LQATRPPKPDDTA----ELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRRIYEK 195 Query: 228 TATKTRSGAIAYAVRN 243 ++ S A+A R+ Sbjct: 196 LHVRSSSQAVARYYRH 211 >gi|158338175|ref|YP_001519352.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308416|gb|ABW30033.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 224 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +T RE + L ++ G ++ EI+ L I+ TV N+++SI+ + ++R+ +A Sbjct: 157 ITPREQDVLKLVATGASNREISETLHITEKTVKNHVSSILSRVGVQSRTQLAIWA 211 >gi|149203303|ref|ZP_01880273.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143136|gb|EDM31175.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 240 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 7/183 (3%) Query: 63 LVRWDLFQ--EQKLDSIVSSDWPFDLVRCM---ALSEKDKYYNVLQRPTELFCPVFHTLP 117 + R D + +Q L + + P +V + +S D + E V ++ Sbjct: 47 IGRIDTAESLDQALAMVAENGPPDIIVLDLNLPDVSGLDGLARLRAVAGETPIVVVSSMS 106 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 E+ + + + F + + + L E +L Q D Sbjct: 107 ESRMVCSVIHAG--AAGFVPKHSQRPVFRAAFEAIAAGEIFLPEGVVLTKTQEQPVNDRD 164 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT ++ L I EG+ + +IA L I+ TV ++ +IMRK +TR+ A+ Sbjct: 165 EAVERLAHLTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAV 224 Query: 238 AYA 240 A Sbjct: 225 LIA 227 >gi|157370683|ref|YP_001478672.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157322447|gb|ABV41544.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 497 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187 Y + D+ + + L +++D W L AN+ ++ +LT Sbjct: 370 YLLVMMDITERKRSELELVSAIEEVMQDASWFSQTLLEKLANVKSINKPNLSGFSFTDLT 429 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + L I EG +IA L ++ NTV N++A + K +RS AI +A + Sbjct: 430 ARERDVLGLICEGLPDKKIATRLNLAPNTVRNHVAMVYSKLDVHSRSEAIVWARERGL 487 >gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 247 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + + LT E CL S G TS+EI + ++ TVN+Y+ I RK + RS AIA Sbjct: 180 FNQQIGLTAGETTCLELASRGMTSEEIGAQMDLTTETVNSYMKLITRKLGARNRSQAIAD 239 Query: 240 AVRNNIV 246 A+R N++ Sbjct: 240 ALRLNLI 246 >gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 14/134 (10%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + R L V + G + P +AA Sbjct: 90 VFAAMRAGARGYVLKGARKAELVRSVQAVAEGEAIFGP--------------AIAARLTG 135 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F + ELT RE E L ++E T+ +IA LG+S+ TV N+++++ K Sbjct: 136 YFTERERSEPALPELTRREREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVA 195 Query: 232 TRSGAIAYAVRNNI 245 R+ AI A + Sbjct: 196 DRAHAIMRAREAGL 209 >gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 199 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 40/65 (61%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 ++ LT E+E L IS+ ++++I+ L ISR TV+ ++++I K +R GA+ A+ Sbjct: 135 ENHLLTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAI 194 Query: 242 RNNIV 246 R ++ Sbjct: 195 RLKLI 199 >gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 222 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 9/180 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + +S P ++ + + D L + F + Sbjct: 38 RLAASHLPDVVLMDIRMPGTDGLAATRHISADPALAAVHVVMLTTFEVDEYVVQSLRAGA 97 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFEL 186 + + + + + ++ I A + V + L Sbjct: 98 AGFLGKGAEPSELLGAIRTAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAAL 157 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A +V Sbjct: 158 TGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 217 >gi|330951723|gb|EGH51983.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 87 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+R Sbjct: 22 VQLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81 Query: 244 NIV 246 ++ Sbjct: 82 GVI 84 >gi|269125504|ref|YP_003298874.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310462|gb|ACY96836.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 203 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ ++ L+ RE E + I+ G+++ EIA L +S TV N++ I K Sbjct: 111 DLIRALRDASRARHGLSAREAEVMDLIATGRSNGEIARQLFLSEKTVKNHVNRIYAKLGV 170 Query: 231 KTRSGAIA 238 +R+ AIA Sbjct: 171 TSRASAIA 178 >gi|210050464|dbj|BAG80716.1| transcriptional regulator [Rhodococcus sp. YK2] gi|210050474|dbj|BAG80725.1| transcriptional regulator [Terrabacter sp. YK3] Length = 402 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%) Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 Q + + V + L+ RE E L ++ G+T+ IA L ++ TV +++ I+RK Sbjct: 329 QLDTYPRQAVRFAPASSLSTRESEVLRLMAAGETNSAIAARLFVTDETVKSHVKQILRKL 388 Query: 229 ATKTRSGAIAY 239 + R+ A+A Sbjct: 389 HARNRAEAVAK 399 >gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis FV-1] gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D106004] gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D182038] gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 209 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%) Query: 59 SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116 SH +L+ D + + ++ D FD+V +P L + Sbjct: 4 SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAAKFQPDVILLDLNMKGM 63 Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170 T A G D R LT AR + M+ +L+D EI L QA Sbjct: 64 SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 123 Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 S ELT RE++ L ++ G ++ ++A L IS TV + Sbjct: 124 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 183 Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244 I +++RK ++R A + N Sbjct: 184 IRNLLRKLNVRSRVAATIMYLENK 207 >gi|328887358|emb|CCA60597.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 86 LVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVAR 139 +V + + D + + PT V T ++ + + + + Sbjct: 59 VVIDLRMPGTDGIEATRLITEGPTGARVVVLTTFDDDDHVYGALHAGASGFLVKDMALDD 118 Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 I + ++ +I L+ + + V + +T RE E LT + Sbjct: 119 ILAAVRVVAAGDALIAPGVTRR--LIKEFTDRPRTAPAVPRRRAEGITDREREVLTLVGR 176 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G ++ E+A L IS T Y+ ++ K + R + A +V Sbjct: 177 GLSNTEVAAELHISVATAKTYVTRLLAKLNARDRVQLVIIAYEAGLV 223 >gi|311896508|dbj|BAJ28916.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 203 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +S D+ G LT RE++ L +S G+++ EI L +S +TV + + +K Sbjct: 129 RRLRSPDM--GAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGA 186 Query: 231 KTRSGAIAYAVRNNIV 246 R+ A+A R +V Sbjct: 187 SDRAHAVALGFRWGLV 202 >gi|294791176|ref|ZP_06756333.1| two-component system response regulator [Scardovia inopinata F0304] gi|294457647|gb|EFG26001.1| two-component system response regulator [Scardovia inopinata F0304] Length = 258 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E + I+ G T E+A L IS TV +++ ++RK R +A I Sbjct: 198 LTSREREVMQLIARGYTYKEVASELFISVKTVETHVSRVLRKLQLSNRGELALWAAHQRI 257 Query: 246 V 246 V Sbjct: 258 V 258 >gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047] gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047] Length = 199 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 170 ANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 N D+ ++ L T E+E L IS+ ++++I+ L ISR TV+ ++++I K Sbjct: 122 GNQVIPDDLLQREESHLLTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKL 181 Query: 229 ATKTRSGAIAYAVRNNIV 246 +R GA+ A+R ++ Sbjct: 182 NVTSRVGAVREAIRLKLI 199 >gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 242 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 25/186 (13%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTELFC---PVFHTLPENITP-----PAGMDNRYCSLT 134 P ++ + + + Y + + + PV + +T + Y S Sbjct: 59 PDLIISDVMMPRANGYDLLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKP 118 Query: 135 FDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDVHW 180 FD + + + + +L++ ++ EI + Q ++ Sbjct: 119 FDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNQTNPENKINL 178 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA Sbjct: 179 P---SFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 235 Query: 241 VRNNIV 246 + N++V Sbjct: 236 LENHLV 241 >gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 361 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ F LT RE E L W+S GKT+ +I ILG++ TVN ++ + K +TR Sbjct: 289 AHTSALASQFGLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 347 >gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] Length = 209 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA------------NM 172 G D R LT AR + M+ +L+D EI L QA Sbjct: 76 GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195 Query: 233 RSGAIAYAVRNN 244 R A + N Sbjct: 196 RVAATIMYLENK 207 >gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 75 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ +R Sbjct: 11 FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRL 70 Query: 244 N 244 Sbjct: 71 G 71 >gi|284032715|ref|YP_003382646.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812008|gb|ADB33847.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 217 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 4/142 (2%) Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 P + F + + + + + ++ + Sbjct: 77 PKVIVLTTFDLDEYAFAGLRAGASGFLLKDASADEVLHAIRAVHAGDSVLAPSTTRRM-- 134 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 ++ LT RE + L I+ G ++ E A L +S TV ++A + Sbjct: 135 --LDHLPTARAGHEASPLLQRLTARERDVLLEIAHGHSNAETAQRLFLSEATVKTHVAHL 192 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R A+ +A N +V Sbjct: 193 LAKLEVRDRVQAVIFAYENGLV 214 >gi|262202778|ref|YP_003273986.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086125|gb|ACY22093.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 220 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + D LT RE+E + ++ G+++ +IA L +S TV +++ K +R+ A+ Sbjct: 151 MRTPPDTVLTPREIEIIAEVATGRSNRQIARELMLSEMTVKSHLVHAFTKLGVGSRTAAV 210 Query: 238 AYAVRNNIV 246 A A R ++ Sbjct: 211 AEARRRGVI 219 >gi|270308020|ref|YP_003330078.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270153912|gb|ACZ61750.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 224 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE+E L + G ++ +IA L +S T+ ++++I +K + +R+ AI Y ++ Sbjct: 157 PLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNICKKLSVGSRTEAILYGLKRG 216 >gi|15601642|ref|NP_233273.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121726448|ref|ZP_01679712.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147671672|ref|YP_001215191.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153802474|ref|ZP_01957060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153819712|ref|ZP_01972379.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153822367|ref|ZP_01975034.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227812454|ref|YP_002812464.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229510178|ref|ZP_04399658.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|229517693|ref|ZP_04407138.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|254850052|ref|ZP_05239402.1| transcriptional regulator [Vibrio cholerae MO10] gi|298499668|ref|ZP_07009474.1| LuxR family transcriptional regulatory, chaperone HchA-associated [Vibrio cholerae MAK 757] gi|9658321|gb|AAF96785.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121631043|gb|EAX63420.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124121993|gb|EAY40736.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|126509730|gb|EAZ72324.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126520130|gb|EAZ77353.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146314055|gb|ABQ18595.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|227011596|gb|ACP07807.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227015536|gb|ACP11745.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229345729|gb|EEO10702.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|229352623|gb|EEO17563.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|254845757|gb|EET24171.1| transcriptional regulator [Vibrio cholerae MO10] gi|297541649|gb|EFH77700.1| LuxR family transcriptional regulatory, chaperone HchA-associated [Vibrio cholerae MAK 757] Length = 253 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89 L++++ + + + G + + ++ I + DW FD Sbjct: 23 LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 81 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141 + + KY + + E P F T ++ P G + Sbjct: 82 IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 141 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199 G + L K E+ LL+ Y + + L+ RE E L+ + Sbjct: 142 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 201 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G+ +IA+ LG+S T+ N++ + K T + I A++ Sbjct: 202 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246 >gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 210 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 12/132 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------LAAYQANM 172 +D R LT +R + ++ +L+D E L ++ A+ Sbjct: 77 SIDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGQNVISDAVADY 136 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 S ELT RE++ L ++ G ++ ++A L IS TV +I +++RK ++ Sbjct: 137 LSSRSEQHDPFAELTERELDVLQEVARGMSNKQVAAQLHISEETVKVHIRNMLRKLDVRS 196 Query: 233 RSGAIAYAVRNN 244 R A + + Sbjct: 197 RVAATVMYLEHK 208 >gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 234 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L W++ G+ EIA LG+S TV N++ ++ T + A+ A R Sbjct: 172 LSTREREVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRGE 231 Query: 246 V 246 + Sbjct: 232 I 232 >gi|146306170|ref|YP_001186635.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145574371|gb|ABP83903.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 868 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L I++G ++ EIA L IS +TV + I K + R+ A+A A + Sbjct: 806 LSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHARRINVKLGVQRRTQAVAMAKAYGL 865 >gi|21223737|ref|NP_629516.1| chitinase two-component response regulator [Streptomyces coelicolor A3(2)] gi|256785170|ref|ZP_05523601.1| chitinase two-component response regulator [Streptomyces lividans TK24] gi|289769063|ref|ZP_06528441.1| response-regulator [Streptomyces lividans TK24] gi|4323625|gb|AAD16452.1| response-regulator [Streptomyces coelicolor A3(2)] gi|8568799|emb|CAB94548.1| chitinase two-component response regulator [Streptomyces coelicolor A3(2)] gi|289699262|gb|EFD66691.1| response-regulator [Streptomyces lividans TK24] Length = 213 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 5/167 (2%) Query: 83 PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 P ++ + + D V ++ ++ L E + L A Sbjct: 48 PDLVLMDVQMPRMDGVSATRIVVGEQLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTDA 107 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 R + + G I+ + L+A + A + ELT RE E L+ + Sbjct: 108 RDLLAAVRTVAGGEGIVAPAVTRR-LIAEFAAKPVREPTADPAVLRELTRREREVLSCLG 166 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EG ++ +A L ++ TV +++ ++ K ++R A A I Sbjct: 167 EGLSNAAVAERLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI 213 >gi|315618207|gb|EFU98797.1| putative csgAB operon transcriptional regulatory protein [Escherichia coli 3431] Length = 216 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ S+ Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYSL 194 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 195 FKKIAVKNRTQAVSWA 210 >gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1] Length = 190 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +LA + + D+ + LT E + L ++EG ++ EIA L +S TV NY+ S Sbjct: 107 VLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTS 166 Query: 224 IMRKTATKTRSGAIAYAVRNN 244 I+ K + R+ A+ A Sbjct: 167 ILSKLGAENRTAAVKVAQEKG 187 >gi|288904336|ref|YP_003429557.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|288731061|emb|CBI12607.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] Length = 227 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129 + + P ++ + + + D V + + + T ++ + + Sbjct: 41 ETLPTSKPDVILMDIRMPKMDGVLCTKAVKENYPNIKVIILTTFDDDDFIYSALKYGATG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + ++ +I D ++ L + A + V +++ Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + I G ++ EIA L +S TV NY+++I+ K + R+ +AV+ + Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216 >gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 242 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 21/184 (11%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133 P ++ + + + Y +L++ E PV + +T + Y S Sbjct: 59 PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDVHWGK 182 FD + + + + +L++ +I + + + + + Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKID 177 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 178 IPSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237 Query: 243 NNIV 246 N++V Sbjct: 238 NHLV 241 >gi|148553426|ref|YP_001261008.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148498616|gb|ABQ66870.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 861 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 49/134 (36%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 TL E + + ++ L+ + + + + L+ Sbjct: 727 IATLVELLQSAQQPSMQAFIEEGELMARLCSLVAHHSQRHALGPEASRFLAELSERLGQS 786 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ L+ RE E L +++G+++ A L +S TV ++ I RK Sbjct: 787 YEHVIDRDAGGSYLSAREREILLSLAQGESNKSTAERLNVSEATVKFHLQRIYRKLGAHN 846 Query: 233 RSGAIAYAVRNNIV 246 R AIA A + ++ Sbjct: 847 RVKAIAVAQQQGLL 860 >gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 217 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 21/224 (9%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ +D + + AL + + F +V + + P ++ + Sbjct: 1 MTIRILLIDDHTLFRSGIRALLQR--QADFEIVDEAADGVEGIKR-AKQHRPDVILLDLN 57 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 + E + LP++ + L + R G +L + Sbjct: 58 MPGLSG--------LEALQLLVEDLPDSAVIVLTVSEEAEELATALRRGARGYLLKNIET 109 Query: 152 RIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGK 201 + + A F++ + +LT RE E + ++ G+ Sbjct: 110 EALTSAIRRAAAGEPVISEAMTAKLVQQFRAPAPAPVRQDDTAKLTAREREIVQGLTRGE 169 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ EIA LG++ +TV ++ +I++K +R YAV + Sbjct: 170 SNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERGL 213 >gi|326334307|ref|ZP_08200525.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] gi|325947916|gb|EGD40038.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A + + G LT RE+E L I++G + EIA L +S NT+ ++I Sbjct: 117 TAAGEPINEPPSDRQGAAAGLTVREIEVLKLITQGLPNQEIAKRLAMSGNTLKSHIRRAY 176 Query: 226 RKTATKTRSGAIAYAVRNNI 245 RK TRS A+++A+ + + Sbjct: 177 RKIHVTTRSQAVSWAIAHGL 196 >gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 LT RE +CL I EG + EIA LGI+ TV ++ +I+ K K+R A Sbjct: 169 LTSREKDCLKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGVKSRLEA 219 >gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 12/163 (7%) Query: 89 CMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142 + ++ D + L F A + + + A + Sbjct: 59 DIRMARMDGIEACAEIRRHRPDTRVLMLTTFDLDEYLFRSVAAGASGFLTKDTPGADVAG 118 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + + ++ A + ++ +L+ RE + L ++ G + Sbjct: 119 AIREVHSGRSVVSPRATR------ALIDRIARAAPDAAAVAADLSPRERDVLALLARGFS 172 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L ++ +TV +++S+ RK + R + +A RN I Sbjct: 173 NAEIARELFVAESTVKTHVSSLTRKVGVRDRLHVVVWAYRNGI 215 >gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b] Length = 267 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++CL+ IS+G T +I+ L +S TVN + SI K + + A++ A R Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264 Query: 245 IV 246 ++ Sbjct: 265 LL 266 >gi|284989376|ref|YP_003407930.1| LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062621|gb|ADB73559.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 983 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 T RE E L +++G+T+ +I L +S T + +++ I+ K R+ A+A A + Sbjct: 918 FTPREAEVLRLLAQGRTNRQIGAELYMSEKTASVHVSRILAKLGAGGRTEAVALAAARGL 977 Query: 246 V 246 + Sbjct: 978 L 978 >gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby] gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing CheY-like receiver domain and HTH DNA-binding domain [Legionella pneumophila str. Corby] Length = 267 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++CL+ IS+G T +I+ L +S TVN + SI K + + A++ A R Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264 Query: 245 IV 246 ++ Sbjct: 265 LL 266 >gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] Length = 267 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 +LT RE++CL+ IS+G T +I+ L +S TVN + SI K + + A++ A R Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264 Query: 245 IV 246 ++ Sbjct: 265 LL 266 >gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM 20213] gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM 20213] Length = 227 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H + L+ RE E + I+ G T E+AV L IS TV +++S++RK R+ Sbjct: 160 HDEELDRLSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTELTR 219 Query: 239 YAVRNNIV 246 +A IV Sbjct: 220 WAADRRIV 227 >gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 195 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 17/191 (8%) Query: 65 RWDLFQEQKLDSIVSSDWPFDLVRCMALSEK-DKYYNVLQRPTELFCPVFHTLPENITPP 123 R D+ + + I + D PF + +A ++ + +P L + P Sbjct: 13 RADVVTKLRTAGINAVDRPFQVPVVVAAADTVGRAIRSCPQPYRTGDYRLLVLADAFDPA 72 Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--------DRLWEIGLLAAYQANMFKS 175 ++F + ++ + + + + +L + Sbjct: 73 D--------VSFALRAGVRAMLSITSEPEKLAAAVHATNQSEGRMPSEVLLKLLHSRVAG 124 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 V LT R+ L +++G + IA L S +TV N I +M + R+ Sbjct: 125 NPVSTPSPSPLTPRQTAVLNLMADGHPNVAIATALSCSEHTVKNVIYDMMMRLQVNNRAH 184 Query: 236 AIAYAVRNNIV 246 A+A A+R ++ Sbjct: 185 AVARAIRAGLI 195 >gi|21219875|ref|NP_625654.1| two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|256789028|ref|ZP_05527459.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|289772921|ref|ZP_06532299.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|13122115|emb|CAC32294.1| putative two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|289703120|gb|EFD70549.1| two component system DNA binding response regulator [Streptomyces lividans TK24] Length = 211 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P + R G A A + LT RE E L +++G ++ Sbjct: 107 LLKDAPPEDLADAVRTAAAGRTALAPAVADRLMHRLRTPGTTLTRRETEVLALVADGLSN 166 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L ++ TV +++A + K +R+ A+A A ++ Sbjct: 167 QAIGRRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAGSLGLI 209 >gi|300785055|ref|YP_003765346.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794569|gb|ADJ44944.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R + LL+ +A M +S + + L+ RE+E L ++ ++ +IA L IS T Sbjct: 126 SRTRDNVLLSIPRATM-ESLERQQEQRTLLSDRELEVLRLVAAAMSNAQIASRLFISEGT 184 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V ++ +I K +R AI A + ++ Sbjct: 185 VKRHLTNIYGKLGAVSRVDAIKKAAKARLI 214 >gi|90020641|ref|YP_526468.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89950241|gb|ABD80256.1| regulatory protein, LuxR [Saccharophagus degradans 2-40] Length = 221 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL + ++ D +LT RE + L I +G T+ +I+ L +S +TV +++ + Sbjct: 136 LLHHFLDKNRRAPSKVAHPDVKLTRRERQILKLIKDGATNADISTALKVSEHTVKSHLYN 195 Query: 224 IMRKTATKTRSGA 236 + +K + R A Sbjct: 196 VYKKIGVRNRLEA 208 >gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 226 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 17/163 (10%) Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 R + + +V P ++ + +T D+ L + ++ G + Sbjct: 77 RPYSPNTVFLALSVSDSPQDVGSVIRAGAQGYVTKTISGDD----LVSSIKQVHEGYAVF 132 Query: 148 FPKGRIILRDRLWEIGLLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 PK +L+A+Q AN +H + L+ RE E + I+ G T Sbjct: 133 SPKLAGF---------VLSAFQNGPSANGAFGGPIHDDELDRLSNREQEVMRLIARGYTY 183 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+A L IS TV +++S++RK RS +A IV Sbjct: 184 KEVASELFISIKTVETHMSSVLRKLQLSNRSELTRWAADRRIV 226 >gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 200 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 + + G++ LT RE E L I++GK + EIA L I+ TV NYI+ I+ K R Sbjct: 129 DEAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIE 188 Query: 236 AI 237 AI Sbjct: 189 AI 190 >gi|330470665|ref|YP_004408408.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813636|gb|AEB47808.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 338 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++ G+++ E+A LGI TV +++ ++RK + R A+ + + Sbjct: 278 LTAREREVLLAVARGRSNAEVAADLGIGDETVKTHVSEVLRKLGCRDRVQAVIAVYESGL 337 >gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681] gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681] Length = 75 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ +R Sbjct: 11 FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRL 70 Query: 244 N 244 Sbjct: 71 G 71 >gi|300784381|ref|YP_003764672.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299793895|gb|ADJ44270.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 1004 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 44/94 (46%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 I LRD + ++ A + + LT RE + L ++ G+T+ ++ L I Sbjct: 906 IPLRDAVRDLAHRARVELAGLEPAPPARTVTDPLTDRERDVLERVALGRTNRQVGEELYI 965 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV+ +++ +M K R+ A+A A ++ Sbjct: 966 SEKTVSVHLSRVMAKLGASRRAEAVAIAYDRGLL 999 >gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 7/199 (3%) Query: 52 LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTEL 108 L + A+ L+V + + + V P ++ + + D + ++ P Sbjct: 17 LRTILSAAEDLVVVAEAYDGAEAVEAVVRHRPHVVLMDLHMPGVDGLAAIEHIVRFPAPP 76 Query: 109 FCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 V T + M L IGL+ + G +L L A Sbjct: 77 KVVVLTTFDRDGYVLRAMSLGAAGFLLKDTPPEDLIGLVRVAADGHTVLSPAATRRLLTA 136 Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + A + D + +LT REVE LT + EG ++ +IA L +S T+ +Y++ ++ Sbjct: 137 S--AGHGAARDRALARIADLTDREVEVLTCLGEGLSNAKIARRLYLSEATIKSYVSRMLV 194 Query: 227 KTATKTRSGAIAYAVRNNI 245 K R+ A A + Sbjct: 195 KLGFSNRTQAGLLASEAGL 213 >gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] Length = 196 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + Y + + L + + ++ +A Y A+ S DV Sbjct: 84 AGADGYLLKDTEPDELVELLKVSLRGNKAYSKE-------VAKYLADRENSTDV----FD 132 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 ELT RE++ L +++G + +IA L IS +TV ++ S+++K + +R+ A + Sbjct: 133 ELTDREMQILKEVAKGYRNKQIADTLFISESTVKVHMKSLLKKLSVPSRTAATVMYLER 191 >gi|330468305|ref|YP_004406048.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] gi|328811276|gb|AEB45448.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] Length = 219 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 11/156 (7%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFP 149 S + + R E+ V ++ + + Y ++ G+ + Sbjct: 69 SGVEATRLIRARHPEVAVLVVTMFDDDDSLFGALRAGASGYLLKGAAPQQVERGVRAVAN 128 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 ++ + +A F +LT RE E L +++G + IA Sbjct: 129 GELLLGPEI--------GARAVGFFVRGAAPVPFPQLTDREREILDHVAQGLDNATIAHR 180 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L +S TV N++++I+ K R+ AI A + Sbjct: 181 LALSPKTVRNHLSNILVKIGVGDRAQAIVRAREQGL 216 >gi|262374576|ref|ZP_06067850.1| nitrate/nitrite response regulator [Acinetobacter junii SH205] gi|262310572|gb|EEY91662.1| nitrate/nitrite response regulator [Acinetobacter junii SH205] Length = 219 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 9/176 (5%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 ++ LD + +D V + L K ++ E+ F+T T ++ Sbjct: 47 QEALDFLAKND-----VDLVILDHKMPILTGMETLKEIKARNFNTKTILFTVSDSGEDIQ 101 Query: 131 CSLTFDVARIRIGLM---LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187 +L V + + L+ RIILR L LA A + ++ + LT Sbjct: 102 EALKLGVDGYLLKDIEPELIITDIRIILRGELVISPSLAPILAQILRTPSIE-DISSNLT 160 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 RE++ + ISEG ++ IA L I+ +TV ++ I+ KT +TR A + V + Sbjct: 161 SRELQVIQMISEGLSNKMIAHKLSITESTVKVHVKHILNKTGLRTRVEAAVWTVNH 216 >gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 213 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 LA A+ D LT RE+E L + EG ++ I+ L +S+ TV +++ Sbjct: 130 SALAPSVAHRLM--DRMRTPAEALTRRELEVLQLVGEGLSNLRISKRLFLSQATVKSHLV 187 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +R+ A+A A ++ Sbjct: 188 HIYAKLGVDSRTSAVAAATARRLI 211 >gi|326330414|ref|ZP_08196722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951689|gb|EGD43721.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 H ELT RE E L + G + IA L I+ +TV +++ I+RK R+ AIA Sbjct: 315 HLELLSELTARESEVLQLMVAGAPNRVIAERLVIAEDTVKSHVKQILRKLGVANRAQAIA 374 Query: 239 YAV 241 A Sbjct: 375 RAA 377 >gi|326774525|ref|ZP_08233790.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326654858|gb|EGE39704.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 13/157 (8%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDVARIRIGLMLLFP 149 L ++ P+ + T + ++ L + + Sbjct: 69 LDGTSATARIVAGPSRTRVLILTTYETDAEIERAVEAGAIGYLLKDATRDQLVEAVHSAA 128 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +G +L R + A A M + V LT REV+ L +++G ++ EI Sbjct: 129 RGETVLAPR-----VAARLVARMRRPAPVT------LTPREVDVLGAVADGLSNVEIGRR 177 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++ + K R+ A+ A+ N++ Sbjct: 178 LVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214 >gi|182433997|ref|YP_001821716.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462513|dbj|BAG17033.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 13/157 (8%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDVARIRIGLMLLFP 149 L ++ P+ + T + ++ L + + Sbjct: 69 LDGTSATARIVAGPSRTRVLILTTYETDAEIERAVEAGAIGYLLKDATRDQLVEAVHSAA 128 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +G +L R + A A M + V LT REV+ L +++G ++ EI Sbjct: 129 RGETVLAPR-----VAARLVARMRRPAPVT------LTPREVDVLGAVADGLSNVEIGRR 177 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++ + K R+ A+ A+ N++ Sbjct: 178 LVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214 >gi|159898419|ref|YP_001544666.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891458|gb|ABX04538.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 867 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 32/77 (41%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A S L+ RE+E L I+ G T EI L +S TV + +I K Sbjct: 788 AKRQPSVQPQTHTLERLSERELEVLQQIATGLTDREIGERLYLSMYTVKVHARNIYAKLE 847 Query: 230 TKTRSGAIAYAVRNNIV 246 R+ A+A A ++ Sbjct: 848 VSNRTQAVARARTLGLL 864 >gi|116671544|ref|YP_832477.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116611653|gb|ABK04377.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 228 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + ++ Y + + I ++ + + L Sbjct: 93 RFLALSVSDAAEDVVSVIRAGARGYVTKSISGTEISDAVLRVAGGDAVFSP-------RL 145 Query: 166 AAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F D+ + L+ RE+E + I+ G + E+A L IS TV ++++ Sbjct: 146 AGFVLDAFGTAPADIAGDELDRLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSA 205 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK +R +A ++ Sbjct: 206 VLRKLQLSSRHELTKWAAERRLL 228 >gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 209 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 54/163 (33%), Gaps = 10/163 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 DL + + +L P V T + + + Sbjct: 56 MDLQLGEGIDGVEATRRILAGPGASHVLVLTTFDTDTDISRAISAGATGYLLKAEKPE-- 113 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 LF R R +A+ +S +LT RE + L + +G + Sbjct: 114 --ELFAAIRSAAAGRPALSPPIASRVMAQMRSP------LPQLTDREQDILDQLGQGLGN 165 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS TV ++ I K TRSGA+A A ++ Sbjct: 166 KEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIAKERRLL 208 >gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE + L ++ G + EIA L IS TV ++ I K +TR+GA+A Sbjct: 174 RSPRPGLSERERDILRQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAV 233 Query: 240 AVRNNIV 246 A ++ Sbjct: 234 ATERRLL 240 >gi|312199045|ref|YP_004019106.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230381|gb|ADP83236.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 222 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +LA A + V + L+ RE+E L ++ G T+ +A L ++ TV ++ Sbjct: 134 AVLAPSVAATLMNR-VRTPETGPLSQRELEVLQLVAAGATNRVVAAQLFVTEATVKTHLL 192 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I K R+ A+A A ++ Sbjct: 193 NIYAKLGVNDRAAAVAEAFGRGLL 216 >gi|163747623|ref|ZP_02154970.1| probable transcription regulator protein [Oceanibulbus indolifex HEL-45] gi|161379093|gb|EDQ03515.1| probable transcription regulator protein [Oceanibulbus indolifex HEL-45] Length = 241 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 + +LT R+ E L ++ G ++ EIA L +S TV +++ +MRK R+ A A Sbjct: 165 NPDLTRRQYEVLYALANGHSNKEIARDLELSEATVKSHVRQVMRKLHVDNRTQAALLA 222 >gi|300870842|ref|YP_003785713.1| two-component system regulator [Brachyspira pilosicoli 95/1000] gi|300688541|gb|ADK31212.1| two-component system regulator [Brachyspira pilosicoli 95/1000] Length = 320 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 DF LT RE + L+++ GKT+ EI++I IS NTVNN++A+I K+ K R + Sbjct: 259 NDFNLTKREKQILSYLLSGKTNKEISLIFDISLNTVNNHVANIYYKSGVKNRVELV 314 >gi|320008841|gb|ADW03691.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 371 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + ++L+ RE E + IS G ++ +IA IS TV N+I I K + +RS AIA Sbjct: 295 QQYQLSSREAEVMELISSGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAR 352 >gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 226 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 9/180 (5%) Query: 76 SIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMD 127 + +S P ++ + + D L + F + Sbjct: 42 RLAASHLPDVVLMDIRMPGTDGLAATRHISADPALAAVHVVMLTTFEVDEYVVQSLRAGA 101 Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFEL 186 + + + + + ++ I A + V + L Sbjct: 102 AGFLGKGAEPSELLGAIRTAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAAL 161 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TGRE E L ++ G ++DEIA L +S TV ++ M K + R+ + A +V Sbjct: 162 TGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221 >gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 242 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 21/184 (11%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133 P ++ + + + Y +L++ E PV + +T + Y S Sbjct: 59 PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDVHWGK 182 FD + + + + +L++ +I + + + + + Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKID 177 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 178 IPSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237 Query: 243 NNIV 246 N++V Sbjct: 238 NHLV 241 >gi|116694767|ref|YP_728978.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529266|emb|CAJ95613.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 901 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 3/161 (1%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 ++R AL + LQ TE H + R L A + + Sbjct: 743 VLRATALDGMQQRDAALQEMTEALRLASH--EGFLRSFLEEGERVAVLLRAWAGVHLAQA 800 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + L + A + + LTGRE+E L +S G + Sbjct: 801 AALGVAEPFVASLLARLTD-AGSTKPAAEPPAEPAHQPDPLTGRELEVLRMLSAGYRNRV 859 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S TV +++ I K ++R+ A+A ++ Sbjct: 860 IAQKLFLSELTVKSHLRRIHAKLGAQSRTEAVALGRARGLI 900 >gi|330467583|ref|YP_004405326.1| two component system response regulator [Verrucosispora maris AB-18-032] gi|328810554|gb|AEB44726.1| two component system response regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 9/219 (4%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ D + AL + F+ D Q ++ + V D +R + Sbjct: 1 MIRVMLADDQTLVRAGLRALLQSEPDIEFVGEAADGEQTLRVAAQVRPDVLLMDIRMPRM 60 Query: 93 SEKDKYYNVLQRP-----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 + + RP + F + + + A + + ++ Sbjct: 61 DGIEATRRIAARPELSDIRIVILTTFEHDQYIFRSLRAGASGFLVKDIEPAALLQAVRVV 120 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 ++ L+A Y A + +LT RE E L I+ G T+ E+A Sbjct: 121 AAGEALLAPSVTRR--LIAEYAARSHEPP--ASPGLDQLTAREREVLMLIARGLTNQELA 176 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + S T +++ +M K + R + A +V Sbjct: 177 ERMSCSVATAKTHVSRVMMKLGARDRVQVVVLAYEWGLV 215 >gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] Length = 451 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 13/252 (5%) Query: 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60 MN + E T + D L R++ +D + L + + Sbjct: 206 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 265 Query: 61 FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117 +V Q +D + P ++ + + D + Q+ + +F T Sbjct: 266 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRILIFTTFQ 322 Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 + + + + + + + + L+ G +I + +I + + K Sbjct: 323 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 378 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +ELT RE+E L +++G IA L +S TV NY ++ K + Sbjct: 379 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKE 438 Query: 235 GAIAYAVRNNIV 246 A+ A+ I+ Sbjct: 439 EAVQKALEIGII 450 >gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 96 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 154 ILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + D + E+ G ++ + G L+ RE+ CL +G+ S+EIA LG+ Sbjct: 2 LSSDMIVELHGRCCHIMMDLLSLDERRTGAAEALSEREIACLQLAGDGRISEEIAEKLGL 61 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S +TVN Y+ S K + R AIA A+R + Sbjct: 62 SVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 95 >gi|156744240|ref|YP_001434369.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156235568|gb|ABU60351.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 1021 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + LT RE++ L ++ G+T EIA L I+ +TV ++I I K + R+ A A A Sbjct: 957 NEPLTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRTQAAARAHD 1016 Query: 243 NNIV 246 I+ Sbjct: 1017 LGII 1020 >gi|115379306|ref|ZP_01466417.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] gi|115363688|gb|EAU62812.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] Length = 884 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 12/162 (7%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147 L+ V +R + + + + + + + Y +IR + + Sbjct: 727 GLNGIQVTQRVKRRVSNVEILILTSFEDEQKVYEAIQAGASGYLVKRVGPEKIRSSIREV 786 Query: 148 FPKG---RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 G I+ R W Y ++ + LT E E L ++++G ++ Sbjct: 787 MEGGTVLEPIIAKRFW------NYFHSLQAKPAGKPENPWGLTPAEFEVLRYVAKGLSNA 840 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+ ++ + R TV +++ I RK + A+ A++ +V Sbjct: 841 EVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAGVV 882 >gi|158316449|ref|YP_001508957.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111854|gb|ABW14051.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 13/221 (5%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ D L E A+ + V + + + P ++ + + Sbjct: 1 MIRVLLADDQALIRAGFRVLVE---AAADITVVAEAADGAEAVRLARETRPDVILMDIRM 57 Query: 93 SEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGL 144 D + E+ V T + + + + + + + Sbjct: 58 PGTDGLSATRELTGDPTLNEVKVLVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAI 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ ++ L+ Y LT RE E + I+ G T+D Sbjct: 118 RVVARGDALLSPQATRH--LIEQYLRQPATPAPAVTAGLDLLTKRENEIVRLIAYGLTND 175 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA L +S TV + M K A + R+ + A + + Sbjct: 176 EIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGL 216 >gi|332290267|ref|YP_004421119.1| transcriptional regulator NarP [Gallibacterium anatis UMN179] gi|330433163|gb|AEC18222.1| transcriptional regulator NarP [Gallibacterium anatis UMN179] Length = 209 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQ-----ANMFKS 175 +D R LT AR I ++ +L+D L ++ +A Q A + Sbjct: 76 IDARIAVLTVSDARSDIFALIEAGADGYLLKDTEPDTLLVQLKKIAEGQVVLSDAVKQRL 135 Query: 176 YDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 D H D LT RE++ L I+ G ++ +IA L IS TV +I +++RK +R Sbjct: 136 LDNHSANDPLQLLTDREMDVLKLIATGLSNKQIANQLFISEETVKVHIRNLLRKLNVHSR 195 Query: 234 SGAIAYAVRNN 244 A + + Sbjct: 196 VAATVLYLEHR 206 >gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22] gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22] Length = 238 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 L+ RE E L ++ G + EIA L IS TV ++ I K +TR+GA+A Sbjct: 171 RSPRPALSEREHEILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGAVAV 230 Query: 240 AVRNNIV 246 A ++ Sbjct: 231 AKERRLL 237 >gi|218708362|ref|YP_002415983.1| transcriptional regulator [Vibrio splendidus LGP32] gi|218321381|emb|CAV17331.1| transcriptional regulator [Vibrio splendidus LGP32] Length = 215 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211 Query: 243 N 243 N Sbjct: 212 N 212 >gi|170758988|ref|YP_001788912.1| transcriptional regulatory protein DegU (protease production enhancerprotein) [Clostridium botulinum A3 str. Loch Maree] gi|169405977|gb|ACA54388.1| transcriptional regulatory protein DegU [Clostridium botulinum A3 str. Loch Maree] Length = 219 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 +F + D + + + G MLL P+ + + I + Sbjct: 90 IFKPIKYGADGYLLKDAGSEYIIEAIKSVYNGAMLLDPEVTVKVVKAFNSI----TEKTQ 145 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F +++ + LT RE E +S+GK++ +I IL ++ TV NY+ I+ K Sbjct: 146 SFTNFNKIKYELDALTPREREVAKLVSQGKSNKDICNILFLTEGTVKNYVTRILEKLELN 205 Query: 232 TRSGAIAYAVRNNI 245 R+ + ++ + Sbjct: 206 NRTELALFINQDGL 219 >gi|86147858|ref|ZP_01066164.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] gi|85834385|gb|EAQ52537.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222] Length = 215 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211 Query: 243 N 243 N Sbjct: 212 N 212 >gi|289642055|ref|ZP_06474208.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508128|gb|EFD29074.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 259 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G D LT R+ E L +++G ++ EIA L ++ TV +++ +++R+ + R+ YA Sbjct: 188 GLDIHLTQRQREVLELVADGLSNAEIAARLFVTEATVKSHLTAVLRRLDLRDRTQLAIYA 247 Query: 241 VRNNI 245 R I Sbjct: 248 HRGRI 252 >gi|302557670|ref|ZP_07310012.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|302475288|gb|EFL38381.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] Length = 222 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L D L V G L+ P + L L E + A Sbjct: 93 VYGALRGGAAGFVLKDAGPALLIEAVRAACNGEALVSPSVTLRLLKHLNESQAMPRGGA- 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + EL+GR +E + I+ G+T+ EIA L IS +TV ++++ I K + Sbjct: 152 ---------ARSSELSGRALEVVQAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVR 202 Query: 232 TRSGAIAYAVRNNIV 246 R+ +A N +V Sbjct: 203 NRTEIAVWAWENRVV 217 >gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] Length = 237 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 3/153 (1%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152 + D ++ E+ V + + L+ Sbjct: 87 NGADATSAIMLTLAEVKVLVLSASSARSDVLDAVKVGASGYLL---KSASAAELVDAVEA 143 Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 + D ++ L A++ D LT RE E L +++G S +IA LG+ Sbjct: 144 TLRGDAVFTPELAGLVLAHLRGRVDTTDDPASALTPRESEVLRMVAKGLASKQIASRLGL 203 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 S TV+N++A+ +RK R +A+ N + Sbjct: 204 SSRTVDNHVAATLRKLHLANRVELTRFALENGL 236 >gi|289704669|ref|ZP_06501097.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558623|gb|EFD51886.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 209 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 16/166 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 DL + V +R L F T + + Y I Sbjct: 56 MDLQMGAGMDGVTATRAVRERWPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEI 115 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + + + A M +V L+ RE+E L I+ G Sbjct: 116 ASAVRQAAAGRKALAP------QVAATLMGRMSGGSEV-------LSEREIELLELIARG 162 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ A L IS TV ++ I +K R+ A+ A R I+ Sbjct: 163 ATNKMAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208 >gi|239933481|ref|ZP_04690434.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441852|ref|ZP_06581242.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344747|gb|EFE71703.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] Length = 211 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + D LT RE E L +++G ++ + L ++ TV +++A I K +R Sbjct: 137 RLMNRLRTPDTALTRRETEVLALVADGLSNQAVGNRLHLTEGTVKSHLARIYAKLNVDSR 196 Query: 234 SGAIAYAVRNNIV 246 + A+A A ++ Sbjct: 197 TAAVATATDLGLI 209 >gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] Length = 537 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L F + Y + D + + L++ G +I D L+ Sbjct: 399 RVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRGGAMITHD-LFHRMWE 457 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +F+S G ++ LT RE+E L +S+G IA L +S TV NY +++ Sbjct: 458 ENKETGLFESRSD--GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 515 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K K R A+ A ++ Sbjct: 516 EKLGVKNREEAVQKAKDIGLL 536 >gi|124265956|ref|YP_001019960.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258731|gb|ABM93725.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 919 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185 D L AR++ L P+ R + G LAA+ A ++ + Sbjct: 802 DGLGSLLLEPPARLQALWQALAPRLRCPAAAQARLRGRLAAWLAEGPRAAVADAAPPDDP 861 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE E + ++EG+++ IA LG+S +TV ++A+I+ K A +R+ A AY R Sbjct: 862 LSAREREVMALLAEGQSNKLIARALGLSLHTVKRHVANILTKLALDSRTQAAAYWHRR 919 >gi|116694705|ref|YP_728916.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529204|emb|CAJ95551.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 920 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E + L ++EG ++ +A L +S TV ++ +I K R+ A+A A + Sbjct: 859 PLTPKEQKVLQLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLG 918 Query: 245 IV 246 ++ Sbjct: 919 LL 920 >gi|325918348|ref|ZP_08180482.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535427|gb|EGD07289.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 922 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 7/114 (6%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 L + L P L LL + + DV + RE+E Sbjct: 802 LGLPAKAMLRSLRQHDPHTVGGTTRALTIQALLERLSGDEDPASDV-------FSERELE 854 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ +IA L +S+NTV ++ ++ RK ++R A+A A++ ++ Sbjct: 855 VLAQLARGYSNKQIARHLHLSQNTVKFHLKNLYRKLDARSRESALAQALQRGVL 908 >gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 214 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 16/163 (9%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143 + L+ +L++ E V H PE I+ G Y I+ Sbjct: 58 LNMPGLNGLSATEMILEQRPETRILVLSMHDTPEYISNALGHGAMGYVLKDVPTDEIKRA 117 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + R + + V G +LT RE L +++GK++ Sbjct: 118 IDAVMSGERYLCTGAEGAL-------------RPVMSGGREQLTNREQTVLLQLAQGKSN 164 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+A+ L IS TV + +I RK + +G YA+ + ++ Sbjct: 165 KEVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207 >gi|332664117|ref|YP_004446905.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332931|gb|AEE50032.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 211 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKD 183 + L F + R G L + L + + EI G D Sbjct: 89 EREDEDLVFHMLRAGAGGFLTRDVSPLKLLEAIREIQDGGAPMTMNVARLVVASFFKNND 148 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE E L+W++ GK+ +IA IL + + TV ++I +I K +++ AI A Sbjct: 149 SLLTPREREVLSWMARGKSYTQIAEILFVDKETVRSHIKNIYGKLEVHSKADAIEKATLE 208 Query: 244 NIV 246 ++ Sbjct: 209 KLI 211 >gi|198276206|ref|ZP_03208737.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135] gi|198271018|gb|EDY95288.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135] Length = 213 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 + ++ + + + LT E E L ++ GK++ EIA +S TV + Sbjct: 123 QFVCGKAKDLLREEEKEQNRMAPLTQTEKEILRAMALGKSTKEIAAERFLSIYTVATHRK 182 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I RK AI YA+R IV Sbjct: 183 NIFRKLEVNNAHEAIRYALRAGIV 206 >gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens] Length = 244 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL--------TGREVECLTWISEGKTSDEIAVILGISRN 215 LL K GK L T RE E L +S G T E++ LGIS Sbjct: 139 LLVTTHEKAMKHKHFVKGKTAPLDCLQSALITPRETEVLFLVSRGNTYKEVSRTLGISEA 198 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 TV +I + +RK AI+ A+ N+ Sbjct: 199 TVKFHINNSVRKLNVINSRHAISKALELNL 228 >gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 210 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVEC 193 + G +L + ++L+ L + + + ELT RE++ Sbjct: 98 IDAGADGYLLKDSEPELLLQQILSGAQGETVFSEVVEEYLANRPHSANPFRELTERELDV 157 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L ++ G ++ EIA L IS TV +I +++RK ++R A Sbjct: 158 LQEVARGLSNKEIATTLHISEETVKVHIRNLLRKLDVRSRVAATV 202 >gi|291298491|ref|YP_003509769.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567711|gb|ADD40676.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 5/115 (4%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREV 191 +AR + ++ R + + LL A K + L+ RE Sbjct: 19 IARSAVHIVREARASRRLEPLSIDGRMLLHGLAALGIDLEPPKPTPLRANLQHNLSEREH 78 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L I+ GK++ EI L ++ +T+ + RK + R+ A+A A R NI+ Sbjct: 79 QVLLGIAGGKSNAEIGRELYVTEDTIKTHARRAYRKLGARDRAHAVALAFRQNIL 133 >gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 30/198 (15%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD--------- 127 ++ S++P + V + V+ P + +NI + + Sbjct: 45 VIISNYPQEWVDTYKENNYQHIDPVILTAINTVSPF--SWEDNIVINSKLKFSKIFNLSK 102 Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQA----- 170 N Y + D L ++F + + + E + L+A ++ Sbjct: 103 EYDIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMESIVEENKDKLQMLLIATHEKITTLY 162 Query: 171 -NMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 M +S D E + RE E L W S GKT EIA+IL I +TV +I ++++K Sbjct: 163 KEMTQSPQSKKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKL 222 Query: 229 ATKTRSGAIAYAVRNNIV 246 AI V ++ Sbjct: 223 GVLNAKHAIRLGVELQLI 240 >gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 207 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +L D +W LA +++ V +LT RE + + + G ++ EIA L Sbjct: 109 VLEDEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLY 168 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 169 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 201 >gi|302555046|ref|ZP_07307388.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472664|gb|EFL35757.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 L+ RE E L I +G T+ EI L +S TV N+I+ ++ K + R A A Sbjct: 165 LSPREREILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLA 219 >gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum] Length = 245 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 16/192 (8%) Query: 63 LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118 + + + +Q+ +D +V + PF + +S + K + E H + Sbjct: 57 IYQANNYQQ--IDPVVIAALNKITPFPWDEDLLVSTQLKMSKIFNLSRE------HNITN 108 Query: 119 NIT-PPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGL--LAAYQANMFK 174 T +N L+ + + + + + L+ L I ++ Y+ + Sbjct: 109 GYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIESNKDKLQMTLMNIHAETISLYREMIRS 168 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 D + RE E L W S GKT EIA+IL I TV +I ++++K Sbjct: 169 KEDERSNDKDIFSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAK 228 Query: 235 GAIAYAVRNNIV 246 AI + ++ Sbjct: 229 HAIRLGIELQLI 240 >gi|51893491|ref|YP_076182.1| hypothetical protein STH2353 [Symbiobacterium thermophilum IAM 14863] gi|51857180|dbj|BAD41338.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863] Length = 611 Score = 85.4 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE E L +++G ++ EIA L +S TV +++ I++K R+ A + Sbjct: 552 LTQREREVLAHVAQGLSNREIAARLFLSEATVKTHVSRILQKLGLPDRTKAAVF 605 >gi|302867778|ref|YP_003836415.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315505818|ref|YP_004084705.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570637|gb|ADL46839.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412437|gb|ADU10554.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 208 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 12/164 (7%) Query: 83 PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---D 136 P +V + + D +L V T ++ + C Sbjct: 48 PDVVVMDLRMPGVDGITATSRILADRPATRIMVLTTFGDDDHLYPALTAGACGFLLKDAP 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 A + G+ D L + + + +LT RE + L Sbjct: 108 PADLLDGVRRAAAGDSPFSPDVLRRL------VERAVHARAGAPRRTADLTAREQDVLDL 161 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +++G ++ EIA L I TV +I S+M KT + R +A Sbjct: 162 VADGLSNTEIADRLHIGVTTVKTHITSLMTKTGSANRVRLALWA 205 >gi|229819768|ref|YP_002881294.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565681|gb|ACQ79532.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 967 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L +++G ++ +I L IS TV+ +I++++ K R+ A+ A R + Sbjct: 903 LTDRERDVLRLVADGLSNRQIGERLYISPKTVSVHISNLLAKLGVARRAEAVDVAHRRGL 962 Query: 246 V 246 + Sbjct: 963 L 963 >gi|282865307|ref|ZP_06274359.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559780|gb|EFB65330.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 381 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 37/78 (47%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + + ++ S WG EL+ RE E + I+ G T+ +IA IS+ TV N+ Sbjct: 290 SLAQPSVAHSSSGTSVPAAWGLVDELSEREREVMGLIASGMTNQQIAATCFISQKTVKNH 349 Query: 221 IASIMRKTATKTRSGAIA 238 I I K +R AIA Sbjct: 350 INRIFAKLNAGSRGEAIA 367 >gi|256421144|ref|YP_003121797.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036052|gb|ACU59596.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 210 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 37/76 (48%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + F+ V EL+ RE E + ++EG + I+ L IS +TV + +IM K Sbjct: 135 DYFRGKSVGKSGLQELSEREKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNIMHKLNV 194 Query: 231 KTRSGAIAYAVRNNIV 246 KT + I A+ I+ Sbjct: 195 KTSAELIRLAIDKGII 210 >gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 265 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 21/199 (10%) Query: 54 EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113 +Y + R D Q+ L S W +D D + + ++ PV Sbjct: 69 DYWFNHGYF--RIDPVQQVALRSTAPFFWNYD---------TDADTLIKRFMSDDTAPVA 117 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQA 170 L E + + F + R L I LLA Sbjct: 118 RYLNERDM----STGVTVPVHMPRGDYATVTGIRFGRNDDFERYALRYIADFNLLAHVFH 173 Query: 171 NMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 S K LT RE ECL +EG ++ EI+ I+G S TV ++ + +K Sbjct: 174 ETAYSLFDKTAKSVGTVRLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKK 233 Query: 228 TATKTRSGAIAYAVRNNIV 246 + R+ A+ A ++ Sbjct: 234 LGARNRTQAVVRATHYRLL 252 >gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1] gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1] Length = 213 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 11/168 (6%) Query: 84 FDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 + +++ E D + + H + I + L Sbjct: 50 HVFILDISMPEMDGLVVLDTLKEEKLSQNVLMLTMHDQAKYIKKAIEKGAKGYVLKSTSK 109 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + + + G RL EI L + ++ ++ V +LT RE++ L I+ Sbjct: 110 TMLVEAIQKVYNGENFYDPRLTEILLNTSEESKNKQATHV------KLTPREIDILKLIA 163 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + K + EIA +L IS NTV ++ ++ K + S + YA+++ + Sbjct: 164 QNKKTKEIAELLFISVNTVQSHKKNLYSKLNIHSVSELVTYAIQHKFI 211 >gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a] gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a] Length = 232 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 LL + + D L T RE+ L ++ G ++ EIA L +S TV + Sbjct: 134 LLDTFAHRLPDPDSPRAPADPRLARLTDRELVVLGEVAAGHSNAEIAAHLVLSEATVKTH 193 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 + I+ K + R A+ +A +V Sbjct: 194 VGRILAKLELRDRVQAVVFAYETGLV 219 >gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 237 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 E ++ + VAR +GL+ K R I R + Sbjct: 122 ELSFLLRSIERGGAPMDSRVARRILGLIAASAKTRTIEPIRTVPLA-------------- 167 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 L+ RE++ L I++G ++ +IA + +S NT+ + SI RK A K+R+ A+ Sbjct: 168 EPPSAPARLSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLAVKSRTQAV 227 Query: 238 AYAVRNNIV 246 A+++ ++ Sbjct: 228 HEAMQHGLL 236 >gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] Length = 209 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 20/131 (15%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----------------LAAY 168 G+ +R LT AR I M+ +L+D EI L +A Y Sbjct: 77 GISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASQGEKVFSEGVARY 136 Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 AN S D +LTGRE + L ++ G ++ EIA L IS TV +I +++RK Sbjct: 137 LANRQHSADPLR----QLTGRECDVLQEVARGLSNKEIAANLHISEETVKVHIRNLLRKL 192 Query: 229 ATKTRSGAIAY 239 ++R A Sbjct: 193 DVRSRVAATVM 203 >gi|297191143|ref|ZP_06908541.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723336|gb|EDY67244.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 282 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 PPA D V + L L P+ I L E L A + S Sbjct: 159 GPPATGDAVGRRDWETVREVHGELRALAPR---ITDRALREELLAACARLAPGPSTPAPT 215 Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 LT RE++ L ++ G T+ A LG+ TV Y+ S MRK +TR A+ A Sbjct: 216 NGGVSLTPRELDVLGCVASGATNATAAERLGLRPETVKAYLRSAMRKLGARTRLEAVVAA 275 Query: 241 VRNNIV 246 R ++ Sbjct: 276 RRAGLL 281 >gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614] gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614] Length = 229 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 14/180 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V P ++ + + + D Q E + + +D+R + Sbjct: 50 LVEELEPDVVLMDIRMPDMDGVEATRQIFLPERAARRQRPVRVVVLTTFNLDDRAATAIR 109 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGL---------LAAYQANMFKSYDVHWGKDFEL 186 A LL ++L D + + L +S L Sbjct: 110 HGASG----FLLKGTTPVMLADAIRTVHAGNAVLAPTDLTTLLDGRLRSQAPLPPAYLTL 165 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T +E E T ++ G ++ EIA ++ +S +TV ++ +I+RK + R + +A + +V Sbjct: 166 TDKEREVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRKLGLRDRVQIVVFAYEHGLV 225 >gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%) Query: 53 TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----E 107 + VG + + L + K D I+ D + M + K N R + Sbjct: 41 IDVVGEADDGVAALHLIDDAKPDLIIL-DLSMPGLDGMDIIPLVKRRNPASRIVVLTGTQ 99 Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + + + L + G + P +++ + Sbjct: 100 DGTTMKRAFALGVDAYTLKTGGWQDLETAIGEAMAGRRYISPSAGLVVDGGEEGGLAAGS 159 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A L+GRE + L ++EG T+ ++A ILGIS TV+ + +IM K Sbjct: 160 AVA--------------PLSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNK 205 Query: 228 TATKTRSGAIAYAVRNNIV 246 +T A A+R +V Sbjct: 206 LGVRTPVALAAIALREGLV 224 >gi|46310121|gb|AAS87341.1| putative regulatory protein [uncultured gamma proteobacterium] Length = 233 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 2/133 (1%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 V + PA M++ FD + L + +GR+ +R E LL Sbjct: 101 VPRATLVASEFYNDFLRPADMEHGLNVFFFDGNQDVADLRIWRGRGRVPFSER--EEQLL 158 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + K++ + L+ RE E + ++ G + E+A LGIS TV ++ + M Sbjct: 159 LTLEPYFLKAFCTVPKQRQALSLREAEVVRLVAGGASDKEVARALGISFTTVRTHLKNAM 218 Query: 226 RKTATKTRSGAIA 238 K + R+ Sbjct: 219 AKLDCRNRTQLAR 231 >gi|296112985|ref|YP_003626923.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis RH4] gi|295920679|gb|ADG61030.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis RH4] gi|326574060|gb|EGE24009.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis CO72] Length = 218 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 31/236 (13%) Query: 11 VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70 + + R V P LA ++ L+ V A+H + L Q Sbjct: 5 IFTAANPARLLLVDDHPMLRRGLADLLSLEKDVEVI---------AEANHGMEALDILNQ 55 Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAG 125 E + +V D ++ + +K + + + V L + Sbjct: 56 E--IVDLVILDHTMPILNGIETLKKIRELGIQTKVLLFTVSDNSKDVQDALHLGVDGYLL 113 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 D + D+ +I G +++ P IL + + V E Sbjct: 114 KDMEPEQIITDIRKILCGELVISPSLAPILAQAMRKP---------------VKTDSSHE 158 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE++ I++G ++ I LGI+ +TV ++ I+ K +TR +AV Sbjct: 159 LTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214 >gi|295838240|ref|ZP_06825173.1| two component transcriptional regulatory protein devr [Streptomyces sp. SPB74] gi|295826930|gb|EDY45148.2| two component transcriptional regulatory protein devr [Streptomyces sp. SPB74] Length = 155 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184 R C R + + R R G A+ ++ + Sbjct: 32 SMRACGGRPPTPR-ALPSPATHGRRRAPGNSRRRRTGPAGRVMAHFARTGNTLQSSPEGL 90 Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 LT RE + L + EG ++ EIA L I+ TV ++++ I+ K ++R A + Sbjct: 91 DRLTDRERDVLDCLGEGLSNQEIAHRLYITEATVKSHVSHILAKLGVRSRVQAAILVQDH 150 Query: 244 N 244 Sbjct: 151 G 151 >gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 209 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT +E+E L + +G+ + EIA LGI+ TV ++ ++ K R+ A AV + Sbjct: 145 LTAKELEILELVVQGRRNKEIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGL 204 Query: 246 V 246 V Sbjct: 205 V 205 >gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] Length = 215 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNT 216 ++ G A + G D+E LT RE E L ++G ++ EIA +S T Sbjct: 126 QVVAAGATRAVFERFRERATATPGADYERLTPREREILLRAAQGLSNAEIAAAEFLSEAT 185 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V +++ I+ K A + R + YA + ++ Sbjct: 186 VKTHVSRILGKLALRDRVQLVVYAYEHGLL 215 >gi|84394370|ref|ZP_00993090.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|84374999|gb|EAP91926.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] Length = 229 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 + +LT RE++ + + G ++ +IA L IS TV +++ I RK A K R AIA+A + Sbjct: 166 NVDLTIRELQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 225 Query: 243 N 243 N Sbjct: 226 N 226 >gi|325977332|ref|YP_004287048.1| response regulator gacA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177260|emb|CBZ47304.1| Response regulator gacA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 227 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129 + + P ++ + + + D V + + + T ++ + + Sbjct: 41 ETLPTSKPDVILMDIRMPKMDGVLCTKAVKENYPNIKVIILTTFDDDDFIYSALKYGATG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + ++ +I D ++ L + A + V +++ Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + I G ++ EIA L +S TV NY+++I+ K + R+ +AV+ + Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216 >gi|189468407|ref|ZP_03017192.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM 17393] gi|189436671|gb|EDV05656.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM 17393] Length = 209 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A + H + +L+ RE+E L I++G + EIA L IS TV ++ +I K Sbjct: 128 ATAHPCGNPHADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLG 187 Query: 230 TKTRSGAIAYAVRNNIV 246 K+ +G YAV + V Sbjct: 188 IKSVAGLTIYAVMHGYV 204 >gi|73538584|ref|YP_298951.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] gi|72121921|gb|AAZ64107.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] Length = 913 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L +S G + IA L +S TV +++ I K + R+ A+A + Sbjct: 852 LTARELEVLQMLSAGLRNRAIAEKLFLSELTVKSHLRKINAKLGAQNRTEAVAIGRSRGL 911 Query: 246 V 246 + Sbjct: 912 I 912 >gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 225 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 11/217 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 + R++ D + L + A + V + Q+ + S P + + Sbjct: 1 MTIRVLIADDQELVRTGLRTLLD---AQDGIEVVGEAADGQEALDLAQSLRPDVCLFDIR 57 Query: 92 LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + D ++ P + L E + R L + + Sbjct: 58 MPRVDGIEATRILAGAGVENPMAIVVITTFDLDEYVYGALRAGARGFLLKDAGSALLGQA 117 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + G ++ + LL A+ + LT RE E L ++ G ++ Sbjct: 118 IRCAANGDALIAPN-VTVRLLEAFAGQPSPVGEPIAQPTEPLTAREEEVLATVARGLSNS 176 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 EIA L I+ +TV ++AS+M K + R +++ Sbjct: 177 EIASELHITVSTVKTHLASLMTKLGVRNRVEIAIWSL 213 >gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + + + + L++ ++ + L + + ELT R Sbjct: 98 FLLKDVEPEELFDAIRLVYDGQAVLAPTATAHV--LELLKHPNQPAAPTPSPAVAELTPR 155 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I+ G T+ EIA +S TV ++ I+ KT ++ R A+ +A R +V Sbjct: 156 ETVILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRVHAVLFAYRTGVV 212 >gi|194291367|ref|YP_002007274.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG 19424] gi|193225271|emb|CAQ71213.1| Putative Transcriptional Regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 918 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E + L ++EG ++ +A L +S TV ++ +I K R+ A+A A + Sbjct: 857 PLTPKEQKVLHLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLG 916 Query: 245 IV 246 ++ Sbjct: 917 LL 918 >gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13] Length = 64 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ +R Sbjct: 2 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 60 >gi|307296354|ref|ZP_07576181.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878156|gb|EFN09379.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 250 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 9/118 (7%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 Y R+ L L+ R++ L D L L + + D L Sbjct: 105 YIVKEISCDRLVATLRLVAMGERVLPPQLADELQSRPSLT-DALEVERPVDAAC-----L 158 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + RE+E L W+ G + I+ + IS TV ++ +++RK K R+ A +A + Sbjct: 159 SDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNRTQAAIWAANHG 216 >gi|325964863|ref|YP_004242769.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470950|gb|ADX74635.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 217 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 5/114 (4%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 V G ML I + L +LA A + + + G LT REV+ Sbjct: 101 AVEAGASGYMLKDAPPEQIRQAVLAAAAGETVLAPRAAALLMNRISNPG--TSLTPREVQ 158 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ IA + IS TV ++ I K R+ AIA A + I+ Sbjct: 159 LLELLATGLSNRAIAKQVFISEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 212 >gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 206 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 41/96 (42%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I R + + K L RE E L ++EG T+ +I Sbjct: 108 LIGAIRTIAAGRSLLDPAVTQRVLTRLREGPTQDPKLAALGTREREILHLVAEGLTNRQI 167 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 A + +S TV NY++SI+ K +R+ A +A R Sbjct: 168 ASRIHLSEKTVKNYVSSILVKLELTSRTQAAVFAAR 203 >gi|306830368|ref|ZP_07463538.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427393|gb|EFM30495.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 227 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129 + + P ++ + + + D V + + + T ++ + + Sbjct: 41 ETLPTSKPDVILMDIRMPKMDGVLCTKAVKENYPNIKVIILTTFDDDDFIYSALKYGATG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + ++ +I D ++ L + A + V +++ Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + I G ++ EIA L +S TV NY+++I+ K + R+ +AV+ + Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216 >gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] Length = 223 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 154 ILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 +L D +W LA +++ V +LT RE + + + G ++ EIA L Sbjct: 125 VLEDEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLY 184 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +S NTV ++ ++ +K K R A+ +A +NNI Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217 >gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 254 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 165 LAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LAA + + D+ DF LT RE + L I G + IA LG+S NTV ++ Sbjct: 161 LAAQKQASSEDIDLERKIDFGQDLLTMRETQVLDLICVGMQNKIIADRLGLSENTVKVHV 220 Query: 222 ASIMRKTATKTRSGAIAYAVR 242 +I +K + R+ A A R Sbjct: 221 RNIYKKMNVRNRTEAAARYFR 241 >gi|281415470|ref|ZP_06247212.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 202 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 16/166 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 DL + V +R L F T + + Y I Sbjct: 49 MDLQMGAGMDGVTATRAVRERWPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEI 108 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + + + A M +V L+ RE+E L I+ G Sbjct: 109 ASAVRQAAAGRKALAP------QVAATLMGRMSGGSEV-------LSEREIELLELIARG 155 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ A L IS TV ++ I +K R+ A+ A R I+ Sbjct: 156 ATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 201 >gi|89896875|ref|YP_520362.1| hypothetical protein DSY4129 [Desulfitobacterium hafniense Y51] gi|89336323|dbj|BAE85918.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 L R + R ++ + L +M+ + LT RE E L +I+ G T+ E Sbjct: 113 LLQAIRDVARGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKE 172 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L +S TV + A IM K RS + YA+ + Sbjct: 173 IGESLSVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213 >gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] Length = 198 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 18/166 (10%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140 +V + + D + E PV T + + Y + Sbjct: 46 VVSDIQMPGVDGIELTRRLVAEGGPPVLILTTYDTQADVVAAMEAGAMGYLLKDAPEDEL 105 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 ++ + R + + + D L+GRE+E L + G Sbjct: 106 HDAVVAAAQRERTLSPQVANTLA-------------ERVLKPDEALSGREIELLKALQTG 152 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EIA L IS+ TV ++ I K R+ A+ A I+ Sbjct: 153 MSNREIAEALFISQATVKTHLIHIYAKLGVDNRTAAVDKARERRII 198 >gi|238898715|ref|YP_002924396.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466473|gb|ACQ68247.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 235 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 14/182 (7%) Query: 69 FQEQKLDSIVSSDWP----FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124 F Q +D +V F+ + +S K VL + HT Sbjct: 57 FNHQLIDPVVIKALSRVEDFEWDENILISSKLALPKVLDQAKTYDISRGHTF----VLHD 112 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 N FD ++ + + +L LL+ Y+ +++ K+ Sbjct: 113 YKQNLAILSIFDDRPLKTNDFFIDREKMYLL-LVKTHQKLLSLYE-----KFEIPTKKNI 166 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ RE E L W S GKT EI+ I+GI ++ ++ +I K AI A Sbjct: 167 GLSKRENEILHWASIGKTYQEISKIIGIKECSIKFHMKNITNKLGAINSRHAIKLAYELK 226 Query: 245 IV 246 ++ Sbjct: 227 LL 228 >gi|256822428|ref|YP_003146391.1| two component LuxR family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256795967|gb|ACV26623.1| two component transcriptional regulator, LuxR family [Kangiella koreensis DSM 16069] Length = 212 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 17/221 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 + R++ D + +L A ++ E ++ + P V +++ Sbjct: 1 MIRVMLADDHTILRQGLVSLLSK-DADCTVVAEASNGLEAVEKALETR--PQVAVIDISM 57 Query: 93 SEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 E + ++ L L + I + Y + + Sbjct: 58 PELNGMEVVKRIHDKLPECKILVLTMHEEQEYVIHMVRAGASGYLLKDSASEELIDAVKA 117 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205 L + A+ A + D W ++ LT RE E + +GKT+ + Sbjct: 118 LATGKTYYSQ-------YAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKD 170 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L IS T N+ ++ K + + YA ++N++ Sbjct: 171 IARTLDISVKTAENHRGKVLDKLGVSNTAELVRYAAKHNLL 211 >gi|269962780|ref|ZP_06177121.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832470|gb|EEZ86588.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 222 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 16/182 (8%) Query: 71 EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 E+ D +V + ++ ++ + + ++ L ++I D Sbjct: 40 EKLADYVVPALPVPAILLDYSVITDEVFSRYMEFKK-------AELKDSIEVLLNCDKTI 92 Query: 131 CSLTFDVARIRIGLML-------LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + V + G+ L +L+ +W + + + K Sbjct: 93 STEELFVWQTLAGIFYTSDDITTLQVGIGKVLQGDMWFSRKFSQQYITHLRRHSRPVNKS 152 Query: 184 FE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 LT RE + +T++S G ++ +IA L +S NTV ++ +I +K K R A+ +A Sbjct: 153 VSAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAK 212 Query: 242 RN 243 N Sbjct: 213 EN 214 >gi|119962528|ref|YP_947428.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119949387|gb|ABM08298.1| putative transcriptional regulator, LuxR family [Arthrobacter aurescens TC1] Length = 551 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 G+ LT REVE L+ + G ++ +IA L IS T ++A+I K +R+ A A+A Sbjct: 481 GEPGGLTSREVEVLSCVLSGSSNRQIADSLTISEKTAGRHLANIFTKIGVTSRTAAAAWA 540 Query: 241 VRNNI 245 ++ I Sbjct: 541 RQHGI 545 >gi|86608341|ref|YP_477103.1| LuxR family transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556883|gb|ABD01840.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 87 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 39/61 (63%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ + I+ G T+ +IA L IS+ TV+N+I++I+ KT T R + +A++ Sbjct: 11 LSERELQVIELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTANRVALVRWALQWGK 70 Query: 246 V 246 + Sbjct: 71 I 71 >gi|332671209|ref|YP_004454217.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340247|gb|AEE46830.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 207 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L+ P+ +++ R G A + + G+ LT RE E L ++ G ++ Sbjct: 102 LLKDTPRDQLVAGVRAAARGESALSPSVARRLVQQVRGEQERLTAREQEVLAGVARGLSN 161 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I L I+ TV ++ K R+ A+ A+ I+ Sbjct: 162 AGIGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 204 >gi|326559661|gb|EGE10074.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 46P47B1] gi|326559921|gb|EGE10320.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 103P14B1] gi|326561209|gb|EGE11574.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 7169] gi|326566300|gb|EGE16451.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 12P80B1] gi|326567904|gb|EGE18001.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC1] gi|326569517|gb|EGE19577.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC8] gi|326572718|gb|EGE22704.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis BC7] gi|326573892|gb|EGE23844.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis 101P30B1] gi|326577343|gb|EGE27230.1| two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis O35E] Length = 218 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 25/227 (11%) Query: 20 TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 + + L D L +S + + E A+H + L QE + +V Sbjct: 8 AANPARLLLVDDHPMLRRGLADLLSLEKDVQVIAE---ANHGMEALDILNQE--IVDLVI 62 Query: 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAGMDNRYCSLT 134 D ++ + +K + + + V L + D + Sbjct: 63 LDHTMPILNGIETLKKIRELGIQTKVLLFTVSDNSKDVQDALHLGVDGYLLKDMEPEQII 122 Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 D+ +I G +++ P IL + + V ELT RE++ Sbjct: 123 TDIRKILCGELVISPSLAPILAQAMRKP---------------VKTDSSHELTEREIQVA 167 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 I++G ++ I LGI+ +TV ++ I+ K +TR +AV Sbjct: 168 KMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214 >gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] Length = 90 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 39/67 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+GRE++ L +S G T+ EIA L IS+ TV+N+I++I+ KT T R + Sbjct: 4 AKFQNPVSLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVELV 63 Query: 238 AYAVRNN 244 + ++ Sbjct: 64 RWGLQWG 70 >gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda FL6-60] Length = 215 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 17/194 (8%) Query: 62 LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120 ++V + + ++ D F +V + + +P L L Sbjct: 14 MIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAERSQPDLILLDLNMKGLSGLD 73 Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176 T A G+D R LT AR + ++ +L+D E L QA +S Sbjct: 74 TLKALRNEGIDARIIILTVSDARSDVYALVDAGADGYLLKDSEPEALLAQIRQAAEGRSV 133 Query: 177 ------------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +LT RE++ L ++ G ++ +IA L IS TV +I ++ Sbjct: 134 FSESVLAYLSTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNL 193 Query: 225 MRKTATKTRSGAIA 238 +RK ++R A Sbjct: 194 LRKLNVRSRVAATV 207 >gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 212 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 4/145 (2%) Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 + P + L EN+ L + + + G ++ + Sbjct: 71 VPEPLRVVMVTTFGLDENVHAALRAGACGFLLKDAGPNLLVEAVHAAAHGEALVSPAIT- 129 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 LLA Y + + LT RE++ + ++ G+T+DEI L +S TV +I Sbjct: 130 TRLLAHYARRAPRRV---TPPESPLTPRELDVVKAVARGETNDEICRSLVVSMPTVKTHI 186 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 + RK + R+ +A + +V Sbjct: 187 GAAKRKLGVRNRTEIAIWAWESGLV 211 >gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 216 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 5/160 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLM 145 ++ + +L+ E V E + L R + Sbjct: 58 MQMPDGTGATATAELLKVCPEAHVLVLSASDERDDVLDAIKAGATGYLVKSAQRSELVAA 117 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 + ++ GL + + LT RE + L +++G +S + Sbjct: 118 VHATADG----QAVFTPGLAGLVLGEYRRIARSPGPETPVLTERETQVLREVAKGLSSRQ 173 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L IS TV N++ + +RK R YA+ + + Sbjct: 174 IANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213 >gi|254482414|ref|ZP_05095654.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2148] gi|214037419|gb|EEB78086.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2148] Length = 209 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 8/154 (5%) Query: 89 CMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIG 143 +A + +Q PV E YC L ++R Sbjct: 46 DIAALAPAERSAEVQAAAAFGWPVVVMAATPGESEAFQLLNQGAVGYCHLKAAPEQLREV 105 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 +++ G + + + L+ ELT RE+ ++ G ++ Sbjct: 106 ALVVEHGGFWMPPELMQRFLALSTRVVPTKAPVSPELN---ELTSRELMVAEQVARGASN 162 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 EI+ L IS TV ++++ K + R Sbjct: 163 REISQALSISERTVKAHLSAAFEKLGVRDRVQLA 196 >gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + I G P LRDR E Sbjct: 92 VQKLTEAGAAGYLIKQTAANDLVHAIHDIHAGNAYFSPTIAKRLRDRARE---------- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F + + K LT RE E L I+EG+ + +IA LGIS TV + +M K Sbjct: 142 GFANGNNSNVKTSNLTEREAEVLQLIAEGQANKQIASELGISIKTVEKHRQQVMNKLNIH 201 Query: 232 TRSGAIAYAVRNNIV 246 +G YA+ ++ Sbjct: 202 DVAGLTRYAISKGVI 216 >gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 24/199 (12%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPP 123 Q++K ++ S++P + V ++ K VL ++ F + Sbjct: 45 QDEK--PVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQKIMSFPWQKNYFKKTKHQKSNI 102 Query: 124 AGMDNRY-----CSLTFDVARIRIGLMLLFPKGRII--------LRDRLWEI--GLLAAY 168 + Y + + ++ L+ + DRL+ + + + Sbjct: 103 FAQSSEYNITRGYTFPLHDHENNLAMLSLYTESDPDQLMKCISDHEDRLYLLFLSIHNRF 162 Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 A + + K + LT RE+E L W S GKT EIA+I+GI+ +TV +I +++ K Sbjct: 163 LAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVK 222 Query: 228 TATKTRSGAIAYAVRNNIV 246 AI A +++ Sbjct: 223 LDVINAKHAIKKATDLHLL 241 >gi|88807455|ref|ZP_01122967.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88788669|gb|EAR19824.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 261 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 21/234 (8%) Query: 31 DLLARMIPLDCTVSWTMRM--YALTEYVGASHFLLVRWDL---FQEQKLDSIVSSD---- 81 DL +R+ L + + + A LL W + Q + + S D Sbjct: 21 DLSSRIPSLQQQSRQGHSLLRRSRSAIATADPVLLASWTIWFEGQGPLVAACTSEDDCLG 80 Query: 82 ----WPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMDNRYCSL 133 L+ C L E ++++R EL + P T ++ C Sbjct: 81 NIQSHAASLLLCTDLLESGSGISLVRRALAVQPELKALILLRRPIARTILDAIEAG-CHG 139 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVE 192 V G + I D + +++ + S +LT RE + Sbjct: 140 ICAVQSAGTGA--VATALTAIDSDGQYLDPVISGVLHHSRLSSSGGQQLPLQDLTMREED 197 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G T+ EIA L +S TV ++++S++RK K R+ A+ A R +V Sbjct: 198 VLRGLCRGMTNLEIAEDLLVSIETVKSHVSSLLRKLPAKDRTAAVVTAFREGLV 251 >gi|307325965|ref|ZP_07605164.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888457|gb|EFN19444.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 259 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 16/164 (9%) Query: 89 CMALSEKDKYYNVLQRPTEL----------FCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 + S + ++ EL F Y + + Sbjct: 94 RLGSSGDGGDHEGIEVCRELRARLPDLACLMLTSFDDDEALFDAIMAGAAGYVLKQINGS 153 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 + + + ++ + G A A + + L+ RE E L I Sbjct: 154 DLVSAVRTVAGGRSML------DPGATARVMARLRGPAPSGPVELENLSPREREILQLIG 207 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +G T+ +IA L ++ TV N I++I+ K R A A R Sbjct: 208 DGLTNRQIAERLFLAEKTVKNRISAILSKLGVGRRIQAAVIAER 251 >gi|313820373|gb|EFS58087.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822823|gb|EFS60537.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|314925260|gb|EFS89091.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] Length = 210 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G LA A + LT RE++ L ++G ++ +IA L +S TV +++ Sbjct: 128 GALAPAVATRLMAR--MRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +RS A+A A + Sbjct: 186 HIYTKLGVSSRSAAVAKARDIGFI 209 >gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 15/130 (11%) Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174 TL D L + G +L+ P+ +L DR + Sbjct: 90 TLEYGARGYLLKDAGPELLVEAIRSAYRGDVLISPEVLSLLLDR---------------R 134 Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S D LT RE+E I+ G+T+ EIA L IS +TV ++A I + + R Sbjct: 135 SKPNTSSSDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRV 194 Query: 235 GAIAYAVRNN 244 A R+ Sbjct: 195 EIAAALWRSG 204 >gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] Length = 209 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 LT RE + L WI+ G ++ +IA L IS TV +I +++RK +R A Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 234 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + D L + + G P I +L Y A Sbjct: 107 VLQIIKSGAQGYVLKDAPLTELVRAIESVHGGGAFFSPDISQI---------MLDQYLAE 157 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + K +LT RE E L+ I+EG+++ E+A +G+ TV + +M K Sbjct: 158 ATNGEESGNSK--KLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIH 215 Query: 232 TRSGAIAYAVRNNIV 246 +G YA+ + I+ Sbjct: 216 NVAGLTKYAIAHGII 230 >gi|84622783|ref|YP_450155.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366723|dbj|BAE67881.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 552 Score = 85.0 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 11/195 (5%) Query: 58 ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117 A F L RW + ++V + L+ + ++ R P Sbjct: 349 AMGFALARWHRLAGRSSAALVILGQ----IEQACLANDNAWHLARTRARIALVLQQRGEP 404 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMF 173 P + +LT I + R + + +G L Sbjct: 405 LAALPYLYSALEHVALTQSWQSIVELGLPAKAMLRSLRQHDPHTVGGSTRALTIQALLER 464 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 S D D + RE+E L ++ G ++ +IA L +S NTV ++ ++ RK ++R Sbjct: 465 LSDDDDPAGDI-FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSR 523 Query: 234 SGAI--AYAVRNNIV 246 A+ A AV+ ++ Sbjct: 524 ESALAQAQAVQRGLL 538 >gi|307328094|ref|ZP_07607274.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886213|gb|EFN17219.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 238 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 V L+ RE++ L I++G T+ + A L IS+ TV ++ + K K R+ A+ Sbjct: 169 VRKPTQGPLSDRELQVLRLIADGATNRQAAAALFISQATVKTHLLHVYEKLGVKDRAAAV 228 Query: 238 AYAVRNNI 245 + A + ++ Sbjct: 229 SEAHKRHL 236 >gi|229031002|ref|ZP_04187018.1| Response regulator [Bacillus cereus AH1271] gi|228730349|gb|EEL81313.1| Response regulator [Bacillus cereus AH1271] Length = 566 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 97/253 (38%), Gaps = 11/253 (4%) Query: 3 FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62 E Q + + EQ T V ++P ++ + +I L + +L + + Sbjct: 316 LEQVQGTLSIQSNVEQGTLIVCNIPLQTIPVHDIIRLLVVDDQALITNSLEQILEHQTDF 375 Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119 +V + + + P ++ + + E + +L+ R + + T ++ Sbjct: 376 IVAGKAYDGSEALILCEKLQPDIVLMDIQMPEMNGIEALLEMKRRWPNMKIVLMTTFEDS 435 Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173 + ++ Y + ++ L L++ G I + R++E L Q Sbjct: 436 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 495 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 KS + + LT RE+E L +S G IA L +S T+ NY +++ K R Sbjct: 496 KSTKQTF--PYGLTKREMEVLEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNR 553 Query: 234 SGAIAYAVRNNIV 246 AI A NI+ Sbjct: 554 EEAIKMARTENIL 566 >gi|224535141|ref|ZP_03675680.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus DSM 14838] gi|224523238|gb|EEF92343.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus DSM 14838] Length = 209 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A + H + +L+ RE+E L I++G + EIA L IS TV ++ +I K Sbjct: 128 ATAHPCGNPHADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLG 187 Query: 230 TKTRSGAIAYAVRNNIV 246 K+ +G YAV + V Sbjct: 188 IKSVAGLTIYAVMHGYV 204 >gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 158 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 8/141 (5%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGL 164 L F + + + I ++ + G ++ + + E L Sbjct: 22 LILTTFDLDEYVLGGLRAGAAGFLLKSASAEEIVQAIITVATGGSVLAPEVTKTVIEQML 81 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 A+ +A + + ELT RE+E L + G T+ +IA LGI+ TV +++ I Sbjct: 82 SASSRAEIRTPPGLA-----ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRI 136 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 K +R A + V + + Sbjct: 137 FNKLDLVSRVQAAIFCVEHQL 157 >gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125] gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125] Length = 210 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 8/173 (4%) Query: 78 VSSDWPFDL-VRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133 + FD+ V + + E D + R E+ + T ++ + Sbjct: 42 LCESQRFDVAVLDIRMPEMDGIEAAKVLRSRFPEMKILMLTTFDDHQYVMEALKLGVSGY 101 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 L + L L +AA + ++ D LT RE+ Sbjct: 102 MLKDGDTE----SLIRSIKSALNGGLSLEDQVAAKVMPVLLQHEEAIPIDPTLTPREIAI 157 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I EG + E+A LG+S TV N + I+ K A + R+ YA+R+ +V Sbjct: 158 LKCIGEGLNNKEVAERLGLSVGTVKNQTSQILDKLALRDRTQLAIYAIRHRLV 210 >gi|85703813|ref|ZP_01034916.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. 217] gi|85671133|gb|EAQ25991.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. 217] Length = 240 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 7/183 (3%) Query: 63 LVRWDLFQ--EQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLP 117 + R D + +Q L + + P +V + L + D + E V ++ Sbjct: 47 IARIDTAESLDQALAMVAENGPPDIIVLDLNLPDVTGLDGLARLKSVVGETPIVVVSSMS 106 Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177 E+ + + + F + + + L E +L + D Sbjct: 107 ESRMVCSVIHAG--AAGFVPKHSQRPVFRAAFEAIAAGEIFLPEGVVLTKTPEHPVNDRD 164 Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + LT ++ L I EG+ + +IA L I+ TV ++ +IMRK +TR+ A+ Sbjct: 165 EAVERLAHLTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAV 224 Query: 238 AYA 240 A Sbjct: 225 LIA 227 >gi|325277292|ref|ZP_08142919.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097558|gb|EGB95777.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 219 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 2/139 (1%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + HT P+ I L A + G L + + A Sbjct: 79 VLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALEAVRHGERYLSPAIAHTVINQA 138 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 Q N + LT R++E L I GK++ EIA LG+S TV + + IM++ Sbjct: 139 LQRN--RPGAQGGSDRHNLTARQLEILRLIVRGKSTREIATGLGLSIKTVETHRSQIMKR 196 Query: 228 TATKTRSGAIAYAVRNNIV 246 +G + +AVR I+ Sbjct: 197 LQIHDVAGLVLFAVREKII 215 >gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 242 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 19/190 (10%) Query: 59 SHFLLV---RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115 SH+L R D Q L W + ++Y + Q+ + Sbjct: 62 SHYLRSHYERIDPVIMQALRDTEPFRW--------GIGSTERYLSPAQKRLLDEASQYGI 113 Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175 P ++TF + + + R+ ++ + + K Sbjct: 114 RLGFTVPIHDGHGPVAAVTFAGNQREAQF-----ERFVTSNPRMLQLMAMFFHSHVRRKL 168 Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 L+ RE ECL W + GK++ +I ILGIS +T +Y+ + K +T Sbjct: 169 ASDLRVDGAALSAREFECLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRTVVQ 228 Query: 236 A---IAYAVR 242 A +A A R Sbjct: 229 AALRVAAAKR 238 >gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 211 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%) Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 L R I R + + V + L RE + L I+EG T+ +I Sbjct: 113 LVGAIRTIAAGRSLLDPAVTQKVLARLRDEPVEDEQLSALGARERQILRLIAEGMTNRQI 172 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 A + +S TV NY+++I+ K +R+ A +A R Sbjct: 173 AACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARLK 210 >gi|312889097|ref|ZP_07748656.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311298407|gb|EFQ75517.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 225 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 17/222 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-------LFQEQKLDSIVSSDWPFDLV 87 ++ ++ + + + A+ G + D L L ++ D + Sbjct: 8 KIGIVEDQLLFREGIKAILHNWGDFSVIFESADGHSVIQKLSTTAVLPDVMLVDLMLPSI 67 Query: 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGL 144 + + + + + + N Y D + + Sbjct: 68 NNKEYRGSHLTLALGELYPSIKVLILSVHDDENFIIELVKNGAHGYLVKDCDPQELHDAI 127 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 + ++ KG I L + KS + ++ RE E L + T++ Sbjct: 128 VAVYTKGSYINSRTL---TAIQNNMGRKVKSKKLL----VNISAREEEILRLTCQQYTAE 180 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS TVN + +++ KT ++ +G + YA++NNIV Sbjct: 181 EIANKLFISVKTVNGHRNNLLIKTGSRNVTGLVIYAIKNNIV 222 >gi|297202079|ref|ZP_06919476.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297148031|gb|EDY58315.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 280 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 F+L+ RE E + I+ G T+ +IA IS TV N+I I K + +RS A A Sbjct: 211 RFQLSAREAEIMDLIASGMTNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 267 >gi|294626147|ref|ZP_06704754.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665211|ref|ZP_06730510.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599596|gb|EFF43726.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605034|gb|EFF48386.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 235 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L+ + G T+ +A LGIS TV ++ I++K K R+ A YAV++ + Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|256397404|ref|YP_003118968.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363630|gb|ACU77127.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 1084 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 G LT RE+E L +++G ++ +I L IS T + ++++I+ K R A Sbjct: 1013 ADSGSPLGLTARELEVLALVAQGLSNRQIGERLFISTKTASVHVSNILAKLGVSGRGEAA 1072 Query: 238 AYAVRNNI 245 A A R + Sbjct: 1073 AVAHRLRV 1080 >gi|116672689|ref|YP_833622.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612798|gb|ABK05522.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 218 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + L+ RE++ L ++ G + IA L IS TV ++ I K R+ AI+ Sbjct: 149 RNPEPALSAREIQLLQLLATGLPNRAIARRLFISEATVKTHLVHIYGKLGVDNRTAAISV 208 Query: 240 AVRNNIV 246 A + I+ Sbjct: 209 ATQRRII 215 >gi|301059490|ref|ZP_07200403.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446385|gb|EFK10237.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 225 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 40/90 (44%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 DR + A K + LT RE E + I+EG+++ +I+ L IS+ T Sbjct: 129 DRSVSHIVAKNLLAAEEKKGNARMPGYDTLTRREQEIMRLIAEGRSTKQISQQLFISQKT 188 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V N+ A+I K + + +A + + Sbjct: 189 VENHRANIFSKLDIHSTMELVRFAAKYGFI 218 >gi|260576451|ref|ZP_05844441.1| two component transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259021334|gb|EEW24640.1| two component transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 214 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%) Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWIS 198 +G L + + + + + LA N +S + +L+ RE + L ++ Sbjct: 107 GVGSRDLVAVVKDLAQGQSYVSPALAGRILNAMRSGAAAKTANPIDDLSKREEDILRLVA 166 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 EGK++ E+ ++L + TV +Y+ SI++K + R A +A + Sbjct: 167 EGKSNKEVGLVLDLQEKTVKHYMTSILQKLHVRNRVEAAVFAREH 211 >gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 233 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + R L V R+ G LL P + A + Sbjct: 113 FAAIMAGAAGYVLKQIRGSDLVDSVRRVAAGQSLLDP-------------AVTARVLERV 159 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 K ++ LT +E L I EG T+ +IA + ++ TV NY++S++ K + Sbjct: 160 RKGPELDPAL-APLTEQERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQR 218 Query: 233 RSGAIAYAVRNNI 245 R+ A +A ++++ Sbjct: 219 RTQAALFAAKHHL 231 >gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa] gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa] Length = 241 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + + L+ RE E L W ++GK+S EIA+IL IS +TVN + +I +K + Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNK 228 >gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 90 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 39/67 (58%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+ RE++ + ++ G T+ EIA L IS+ TV+N+I++I+ KT T R + Sbjct: 4 SKFETPASLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELV 63 Query: 238 AYAVRNN 244 +A++ Sbjct: 64 RWALQWG 70 >gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D LT RE+E L I++G + EIA L I+ TV + IM+K + Sbjct: 139 DGGEANVPSLTAREMEVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQKLDLHNSAEL 198 Query: 237 IAYAVRNNIV 246 YA+R ++ Sbjct: 199 ATYAIRRGLI 208 >gi|320547831|ref|ZP_08042115.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320447591|gb|EFW88350.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 227 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%) Query: 76 SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129 + + P ++ + + + D V + + + T ++ + + Sbjct: 41 ETLPTSKPDVILMDIRMPKMDGVLCTKAVKEHYPNIKVIILTTFDDDDFIYSALKYGATG 100 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 Y + + ++ +I D ++ L + A + V +++ Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 E + I G ++ EIA L +S TV NY+++I+ K + R+ +AV+ + Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216 >gi|297625366|ref|YP_003687129.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921131|emb|CBL55678.1| two-component response regulator LuxR [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 236 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L + + G ++ P L +R +A + Sbjct: 105 VYSALQAGASGFLLKDAGPTELLAAIRAVASGDSVVAPSATRRLLERFVPTLPIAQSGGD 164 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 K + LT RE E LT + +G + EIA L + TV +I I+ K + Sbjct: 165 TKKRLEA-------LTDREREVLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLR 217 Query: 232 TRSGAIAYAVRNNIV 246 R + +A +V Sbjct: 218 DRVHMVVFAYDAGLV 232 >gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 14/132 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + R +L V R+ G LL P E+ Y+ Sbjct: 103 FTAIMAGAAGYVLKQIRGAALVDAVRRVAAGQSLLDP-----------EVTPRVLYRLRQ 151 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D LT +E L I+EG T+ +IA + ++ TV NY++S++ K ++ Sbjct: 152 GPAEDERLA---GLTDQERRILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLES 208 Query: 233 RSGAIAYAVRNN 244 R+ A +A + Sbjct: 209 RTQAAVFATKLG 220 >gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 220 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 33/73 (45%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A +A S + LT RE E ++ + G TS EI LGI +TV YI + Sbjct: 140 TAQEAYSKLSPEDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVT 199 Query: 226 RKTATKTRSGAIA 238 K K R+ A+ Sbjct: 200 EKMDVKNRTQAVI 212 >gi|46201852|ref|ZP_00208275.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 238 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 12/181 (6%) Query: 68 LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGM 126 Q QK IV D ++ + + + P+E+ V + + Sbjct: 60 AVQTQKDIDIVLLDLTMP-----GMAWAEGLAKLKELLPSEVPLIVLSASDDRRHVLQAV 114 Query: 127 DNRYCSLTF--DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + +R+ + + L G + L L + + Sbjct: 115 NMGAAGFIPKTSSSRVMLSALQLVLSGGVYLPPALLDQSGPGGDDG----APVAGESAIA 170 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT R+ E L + +GK++ EIA +L ++ TV ++ +I++ R+ A+ A Sbjct: 171 ALTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAASHLG 230 Query: 245 I 245 + Sbjct: 231 L 231 >gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] Length = 225 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 9/207 (4%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS-----EKDKYY 99 + + ++ G + + +V + ++ + S P +V + L E + Sbjct: 16 FREGLRSILS--GLAAYGVVG-EAGSAREAMELARSRTPDVVVLDIGLPDANGIEVIRQL 72 Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 L + HT + + L A + + +G L + Sbjct: 73 RTLAVCPRILVVSMHTRLDLVAESLRAGALGYVLKDSAAANLLHGLEAVSRGDRYLDGSI 132 Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 LL + + +S D LT RE + L ++EG+++ IA L ISR TV N Sbjct: 133 VPQLLLKLDEYAVRRSRPADPAYDT-LTRREQQILRLLAEGRSAGAIAADLYISRKTVEN 191 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 + A+I K + + + YAVR ++ Sbjct: 192 HRANIFGKLGLTSMAELVHYAVRLGLI 218 >gi|227540406|ref|ZP_03970455.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239730|gb|EEI89745.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 117 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKT 202 + + + + ++ +I L+ Y F + D KD + + REV+ + I+EG + Sbjct: 14 LNIHTRIDHLSKENTNKISLIGLYGEPSFIHLNVDTQEKKDTKFSKREVDIIKLIAEGLS 73 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++EIA L I+ TV + +I+ K K + I +V ++ Sbjct: 74 NNEIAEKLFIASVTVKKHRQNILLKAGCKNTAQLIKNSVLQGLI 117 >gi|220913455|ref|YP_002488764.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860333|gb|ACL40675.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 9/143 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + + Y + T A I + + + L Sbjct: 91 RFLALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVFRVAGGDAVFSP-------RL 143 Query: 166 AAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A + + F D+ + +L+ RE+E + I+ G + E+A L IS TV ++++ Sbjct: 144 AGFVLDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSA 203 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++RK +R +A ++ Sbjct: 204 VLRKLQLSSRHELTKWAAERRLL 226 >gi|311695311|gb|ADP98184.1| regulatory protein, LuxR [marine bacterium HP15] Length = 900 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ++ RE L I++G ++ EIA L IS +TV + I K K+R+ AI A Sbjct: 839 PISEREQGVLELIAKGLSNQEIADKLHISLHTVKTHARRINAKLEVKSRTQAIVRARELG 898 Query: 245 IV 246 ++ Sbjct: 899 LL 900 >gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 214 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 10/169 (5%) Query: 83 PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P ++ + + D + R L F + + Sbjct: 48 PDVVLMDIRMPGMDGLEATRRIVATGGRTRVLIVTTFDLDAYAYEGLRAGASGFLLKDAR 107 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECL 194 I G+ + ++ RL LL AY + L+ RE E L Sbjct: 108 PEEIVAGIHAVATGDAVVAP-RLTRR-LLDAYAHQVLAPPGTPAEDPRLHTLSDREREVL 165 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 I +G T+ EIA L ++ +TV ++ ++ K + R A+ VR+ Sbjct: 166 VAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMGVRH 214 >gi|167645498|ref|YP_001683161.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347928|gb|ABZ70663.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 137 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 45/82 (54%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LAA A + +V LTG+EV+ L ++ G+++ EIA LG+S NTV +IA + Sbjct: 55 LAARAAPAPFARNVAAVASLGLTGQEVKVLERLAAGQSNKEIAAALGLSPNTVKTHIAHL 114 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 K A R+ AI A +++ Sbjct: 115 FEKLAVSRRTQAIGKARDLHLI 136 >gi|111221722|ref|YP_712516.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111149254|emb|CAJ60939.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 181 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 14/132 (10%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + R +L V ++ G LL P + RL E Sbjct: 63 FTAIMAGAAGYVLKQIRGTALVDAVRQVAAGKSLLDPAVTPRVLVRLRE----------- 111 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + D LT +E L I+EG T+ +IA + ++ TV NY++S++ K ++ Sbjct: 112 GPAEDERLA---GLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLAKLGLES 168 Query: 233 RSGAIAYAVRNN 244 R+ A +A R N Sbjct: 169 RTQAAVFATRLN 180 >gi|158318878|ref|YP_001511386.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114283|gb|ABW16480.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 225 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D L V + G LL P L R E + + + Sbjct: 92 VYQALRAGASAFVLKDIPADQLAGAVRTVADGGALLAPSITRRLIGRFTERRAVGSAPSR 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + LT RE + + ++ G ++ EIA L I TV ++++SI+ K + Sbjct: 152 RVER----------LTDRERDVVVAVARGSSNSEIAQELFIGPATVKSHVSSILTKLGLR 201 Query: 232 TRSGAIAYAVRNNIV 246 R+ + +A + +V Sbjct: 202 DRTQVVVFAYESGLV 216 >gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM 45100] Length = 240 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 15/164 (9%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 L+ L V + I Y + T + + + + Sbjct: 73 GLAIVQHCITAGYSTRFLCLSVSDAAEDVIALIRAGARGYVTKTIESRELVSAIGRVHSG 132 Query: 151 GRIILRD----RLWEIGLLAAYQANMFKS--------YDVHWGKDF---ELTGREVECLT 195 + L + Q+N + + + K ELT RE E L Sbjct: 133 DAVFSPKLAGYVLDAFSTPTSGQSNQYMAGAGEPVAASEEDEEKRLVLDELTRREKEVLR 192 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 ++ G T E+A L IS TV ++++I+RKT R + Sbjct: 193 LLARGYTYREMAERLFISVKTVETHVSNILRKTQQSNRHALTRW 236 >gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 74 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE E + + KT+ EIA L IS TV N+I++ M+K K RS A+ VR Sbjct: 12 LTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRSQAVIELVRLG 70 >gi|209547437|ref|YP_002279355.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538681|gb|ACI58615.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 959 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +L +++ + A K K LT RE E L ++ G+++ EIA L IS Sbjct: 865 LLANQIETLAAKARIDLRGGKEGSTPKAK-LGLTDREFEVLRLVAAGQSNREIADNLFIS 923 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T + ++++I+ K A +R A A A R IV Sbjct: 924 SKTASVHVSNILSKLAVPSRGAAAAMAHRLRIV 956 >gi|288917708|ref|ZP_06412071.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350923|gb|EFC85137.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 243 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 18/155 (11%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 L F + + + G+ + ++ LL Sbjct: 80 LILTTFDLDRYAFAGLRAGASGFLLKDVPPDDLLAGIRTVAAGDAVVAPSTTRR--LLDG 137 Query: 168 YQANMFKSYDVHWG----------------KDFELTGREVECLTWISEGKTSDEIAVILG 211 + + D G + LT RE + L ++ G ++ EIA L Sbjct: 138 FAHRLPDLDDSGSGAGHRPFGAGPGRDGADRLARLTDRERDVLGEVAAGLSNAEIATRLV 197 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ TV ++ I+ K + R A+ +A +V Sbjct: 198 LAEGTVKTHVGRILGKLELRDRVQAVVFAYEIGLV 232 >gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 30/198 (15%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD--------- 127 ++ S++P + V + V+ P + +NI + + Sbjct: 45 VIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPF--SWEDNIVINSKLKFSKIFNLSK 102 Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKG-----RIILRDRLWEIGLL--------AAYQ 169 N Y + D L ++F + I+ + ++ +L Sbjct: 103 EYDIVNGYTFVLHDNNNNLAALSIMFEEHSPTDIESIVEENKDKLQMLLITVHEKITTLY 162 Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 M +S D E + RE E L W S GKT EIA+IL I +TV +I ++++K Sbjct: 163 KEMTQSTQSRKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKL 222 Query: 229 ATKTRSGAIAYAVRNNIV 246 AI V ++ Sbjct: 223 GVLNAKHAIRLGVELQLI 240 >gi|270308742|ref|YP_003330800.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154634|gb|ACZ62472.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 238 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 VH +LT RE L +++G ++ +I L ++ TV Y+ + M+K R+ Sbjct: 170 VHKKFGTDLTDRERTILNLLAKGYSNKDIGQKLDYTQTTVKKYVYNCMKKLGVSNRTQLA 229 Query: 238 AYAVRNNI 245 A N + Sbjct: 230 ILANNNGL 237 >gi|150388326|ref|YP_001318375.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948188|gb|ABR46716.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 205 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 12/133 (9%) Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY---------- 168 N GM ++ LT R IL++ E L A Sbjct: 66 NKARAKGMATKFIVLTSSSKREDFLRAREAGVDGYILKEAFAEDILYALRIVLRGKKFID 125 Query: 169 -QANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 + +++ D+ ELT RE + LT + +G ++ EI L IS +TV ++++I+ Sbjct: 126 PEVIQYQTSDIRENSHLDELTPRERDVLTELGKGLSNFEIGKQLFISEHTVKKHVSNILS 185 Query: 227 KTATKTRSGAIAY 239 K R+ A + Sbjct: 186 KLELNHRTQAALF 198 >gi|298113037|gb|ADI58626.1| AsuR1 [Streptomyces nodosus subsp. asukaensis] Length = 216 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE++ L ++EG ++ + A L IS + V + +++ K R+ A+ A+ + Sbjct: 134 LTPRELQVLRLVAEGLSNKQAARRLQISEHGVKRLVGNVLAKLNCPNRTLAVVRALEYGL 193 Query: 246 V 246 + Sbjct: 194 L 194 >gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 216 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 7/202 (3%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY-----YNVLQR 104 AL +G+ L V + Q V+ ++ + + + D Sbjct: 16 RALATILGSQPDLEVVATVHDGQAAVDTVAHTPVDLILMDVRMPKLDGVAALKKIRAKPN 75 Query: 105 PTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 P ++ +P+ + N + D + + + ++ D + I Sbjct: 76 PPKIVMLTTFNVPDTVKAALTAGANGFLLKDADPETLIESVRTVAAGQTVLAADVVGHIL 135 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 A A V G LT RE+E L I EGKT+ EIA L IS TV ++++ Sbjct: 136 PGALTVAADTLPSHVQQGLSL-LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSN 194 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 ++ K + R A + + Sbjct: 195 LLAKVHARDRVALAIIARKVGL 216 >gi|237799774|ref|ZP_04588235.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022629|gb|EGI02686.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 534 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 14/171 (8%) Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-------LTFDVARIRI 142 + ++ + R + + I G + L + Sbjct: 363 VTSEQRLQALEQRARCVGAQLLELIAMTQQIDLLLGQSRLDEARVLLLRCLHAAAGGALL 422 Query: 143 GLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 L + L ++L LL + A L+ RE+ L Sbjct: 423 PFRTLLGEHAQWLHEQLLQAPHCKVRNALLEKFPACFIPLTPEPAHGSDCLSVRELGVLQ 482 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 I++G ++ EI+ L IS +TV + + I K + R+ A+A A ++ Sbjct: 483 LIAKGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGLL 533 >gi|261405324|ref|YP_003241565.1| LuxR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|315645684|ref|ZP_07898808.1| transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|261281787|gb|ACX63758.1| transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|315279162|gb|EFU42472.1| transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 74 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ Sbjct: 4 TDHNSKFLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAV 63 Query: 238 AYAVRNN 244 ++ Sbjct: 64 VELIKLG 70 >gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 214 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 5/139 (3%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + +F + Y D+ +I ++ + G I LLA Sbjct: 81 VVVSIFGDEARVLEAIQAGAKGYLLKGADLGQIGTDILSVLDGGSPISPGIARH--LLAV 138 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + S + LT RE E L ++ G EIA LGIS TV N+I SI RK Sbjct: 139 VKDGGTGSVEPGLS---PLTEREAEILQAVARGYKRHEIAQHLGISAGTVGNHITSIYRK 195 Query: 228 TATKTRSGAIAYAVRNNIV 246 T A+A A + + Sbjct: 196 LEVSTNMEAVARASKKGFL 214 >gi|284041551|ref|YP_003391891.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945772|gb|ADB48516.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 243 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 4/177 (2%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 ++++ P + + L++ D +L+R + L + P + Sbjct: 66 GAEAVIGHHAPDVALVALDLADVDG-IVLLRRLAQRGSRSAVVLYTDADDPQQSAVALHA 124 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLW--EIGLLAAYQANMFKSY-DVHWGKDFELTGR 189 V R + L R + RLW E G L + D+ + L+ Sbjct: 125 GAAGVIAKRRSIAELSNALRAVAAGRLWFNEPGDLPMPPRRLSPLLTDLRERRSSALSSA 184 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E+ L ++EG +++E A +L +S +TV ++ ++MRK +R+ A+A A+R + + Sbjct: 185 ELRVLALVAEGSSTEEAAELLSLSPHTVRTHLRNVMRKLEASSRAHAVAIAIRESAI 241 >gi|260774409|ref|ZP_05883323.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14] gi|260610536|gb|EEX35741.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14] Length = 209 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 26/203 (12%) Query: 57 GASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111 G + L V D+ + + + + S P D+V M +S D+ L + P Sbjct: 16 GFAQLLNVEDDIQVVGEYGDAQAAFLALSKKPVDVV-IMDISMPDESGLSLLARLKTLHP 74 Query: 112 VFHTLPENI--------TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163 F + +I + Y S + + + ++ R + D L+ + Sbjct: 75 HFKAIILSIYDSASFVSKAIDSGASGYLSKRCGPSELVDAIRMVARGHRYLCADALFNL- 133 Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 S ELT RE E + +GK + EI +L +S TV+ + A+ Sbjct: 134 -----------SNPQEKNVLMELTKREREIFFLLIQGKDAKEIGQVLFLSYKTVHVHRAN 182 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 I+ K I +A+++ ++ Sbjct: 183 ILNKLGLSNIVDLIRFAIQHRLL 205 >gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 233 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F + D R +L V + G LL P L RL +G++ Sbjct: 103 FGAIMAGAAGYVLKDIRGSALVDAVRTVARGGSLLDPTATEKLLSRLR-VGIVPGEADR- 160 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + K LT E L I+EG T+ +I L ++ TV NYI I+ K A + Sbjct: 161 ----EAAASKLATLTVSEKRILELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQR 216 Query: 233 RSGAIAYAVRN 243 R+ A A+AVR+ Sbjct: 217 RTQAAAFAVRH 227 >gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 198 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ +E+ L I++GKTS EI+ IL +S T+ NYI+SI K R AI+ A Sbjct: 134 NPNPLSKQEMNILYLIAQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNRMEAISLAK 193 Query: 242 RNN 244 N Sbjct: 194 ENG 196 >gi|325972574|ref|YP_004248765.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027812|gb|ADY14571.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 305 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 K ++ RE E ++ + EG ++ EIA L IS NTV +I +I K R Sbjct: 245 KKLGISDREAEIVSLLVEGLSNQEIAKKLFISPNTVKTHIKNIYAKLEVNNRLQL 299 >gi|330810002|ref|YP_004354464.1| two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378110|gb|AEA69460.1| Putative two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 215 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 LL R L L L A +S D ELT RE + L I+ G ++ Sbjct: 115 LLIQYIRDALNGALVISPGLTRVMAQALRSP--PRQADVELTERERQVLKTIAGGYSNKV 172 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 I LGI+ TV ++ +++ K ++R A +A+ + Sbjct: 173 IGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210 >gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 220 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L +++GK++ EIA L I TV ++ ++ RK R+ A +A + Sbjct: 160 LSRREMEVLERLTQGKSNKEIARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFAKEAGL 219 >gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] Length = 216 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 11/204 (5%) Query: 50 YALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWPFDLV------RCMALSEKDKYYNVL 102 AL +G+ L +V + +D++ P DLV + K Sbjct: 16 RALATILGSQPDLEVVATVHDGQAAVDTVA--HTPVDLVLMDVRMPKLDGVAALKKIRAK 73 Query: 103 QRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 P ++ +P+ + N + D + + + ++ D + Sbjct: 74 PNPPKIVMLTTFNVPDTVKAALTAGANGFLLKDADPETLIESVRTVAAGQTVLAADVVGH 133 Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 I A A V G LT RE+E L I EGKT+ EIA L IS TV ++ Sbjct: 134 ILPGALTVAADTLPSHVQQGLSL-LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHV 192 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 ++++ K + R A + + Sbjct: 193 SNLLAKVHARDRVALAIIARKVGL 216 >gi|50955085|ref|YP_062373.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951567|gb|AAT89268.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 223 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 ++ + LT RE E + G ++ EIA +S TV +I+ I+ K + R Sbjct: 147 RAAQPVPAEFASLTSREREIFALAARGLSNAEIAGSEFLSEATVKTHISRILGKLGLRDR 206 Query: 234 SGAIAYAVRNNI 245 + YA + + Sbjct: 207 VQMVVYAFEHGL 218 >gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 200 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 +H G + LT RE+E L I +G + ++A ILGI+ TVN +I+++++K R+ A+ Sbjct: 131 MHLGGE-HLTVRELEVLALIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAM 189 Query: 238 AYAVRNNIV 246 A AVR + Sbjct: 190 AIAVRRGFL 198 >gi|297559758|ref|YP_003678732.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844206|gb|ADH66226.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 220 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 8/187 (4%) Query: 66 WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPEN 119 + ++ +V S P + + + D + + F Sbjct: 31 AEAADGREAVDLVLSHRPDVALLDIRMPRMDGLAATAEIRRVAPGTAVVILTTFGEDSYI 90 Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 G + + D + G+ + G + ++A + Sbjct: 91 SQALGGGASGFLLKAGDPRELIAGVHAVADGGAYLSPQ--VARQVIARFGGPRAAREAAA 148 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + ELT RE E L + G ++ +IA L + TV +Y+++I+ + + R A Sbjct: 149 VARVEELTQREREVLALVGAGLSNADIADRLFLVEGTVKSYVSAILNRLEMRNRVQAAIL 208 Query: 240 AVRNNIV 246 A +V Sbjct: 209 AHEAGLV 215 >gi|221633789|ref|YP_002523015.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] gi|221156063|gb|ACM05190.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] Length = 221 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 3/153 (1%) Query: 94 EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 E + L PT H + P + + + L +G + Sbjct: 67 EALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLVARGEV 126 Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 + D+ LL Y + + L+ RE E L + G T+ EIA L +S Sbjct: 127 FI-DQAAARTLLQGYLDHARTGEVQDPAQ--LLSEREREVLRLTAAGYTAQEIADQLFLS 183 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV Y +M+K RS + +A+R ++ Sbjct: 184 PKTVETYRHRVMQKLGFSRRSELVRFALRIGLL 216 >gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 208 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T RE+E L +++G + +I LGI TV ++ +I+RK TR AI A R ++ Sbjct: 144 TARELEVLRLMAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAIGEAFRCGLL 203 >gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 510 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 215 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%) Query: 77 IVSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132 +V+ P L+ +++ + + E + ++ + N Sbjct: 41 MVAKHRPHVLLMDLSMPPGESGLIATGKISSEFPETKILILTMYDDDDYLFHVLKNGASG 100 Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFE- 185 ++ P +I R+ G +A F D + Sbjct: 101 ----------YVLKNAPDDELISAIRMVHKGGTYIHPQMATSLVREFIKKDSESAEQDPF 150 Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L I++G + EIA L +S TV + A IM K K+R + YA++ Sbjct: 151 NSLSQREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPELVEYALKK 210 Query: 244 NIV 246 ++ Sbjct: 211 KLL 213 >gi|239918332|ref|YP_002957890.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839539|gb|ACS31336.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 209 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 16/166 (9%) Query: 84 FDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140 DL + V +R L F T + + Y I Sbjct: 56 MDLQMGAGMDGVTATRAVRERWPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEI 115 Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200 + + + + A M +V L+ RE+E L I+ G Sbjct: 116 ASAVRQAAAGRKALAP------QVAATLMGRMSGGSEV-------LSEREIELLELIARG 162 Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T+ A L IS TV ++ I +K R+ A+ A R I+ Sbjct: 163 ATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208 >gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] Length = 218 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 8/154 (5%) Query: 93 SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFP 149 S + + R + + M Y F +I I + L Sbjct: 60 SGIEACRAISDRAPRTKSLILTGSGDEGDLVEAMAAGASGYLLKDFPAQQI-IESLRLAH 118 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +G+ ++ + L+ + + L+ RE+ L + +GK + EIA Sbjct: 119 RGQALIPLGM-SSQLIRELSQPRQTPGESTTPR---LSDRELGVLQLVGQGKGNKEIAAQ 174 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L IS+NTV N+I +I K +R + Sbjct: 175 LFISQNTVKNHIQNIRNKLNVGSRIELAMHGAEQ 208 >gi|312141565|ref|YP_004008901.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311890904|emb|CBH50223.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 283 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISEGKTSDEIAVIL 210 + DRL + L A +A K + G + L+ RE E L ++ G + EIA L Sbjct: 187 IADRLDDAALTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERL 246 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G+ +T+ +Y+ +IM K +R A+ A R ++ Sbjct: 247 GLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282 >gi|297195878|ref|ZP_06913276.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152976|gb|EFH32075.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 221 Score = 85.0 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D ++ +A + + L + F + + Sbjct: 49 DVVLMDIRMPVMDGLAATRRITGDERLADVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + A + ELT RE E + Sbjct: 109 EPEELLRAVRAVVEGDALLSPGVTRR--LIAEFAARSKGPAEAQGLG--ELTEREREVMA 164 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|83955493|ref|ZP_00964124.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83840137|gb|EAP79312.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 220 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 21/181 (11%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPV--FHTLPENITPPAG- 125 ++S+V D P ++ + + E +L+R + + H PE I+ Sbjct: 48 AAIESVVELD-PDVILMDLNMPEIGGLSATEILLERQPDTRIVILSMHDNPEYISSALSH 106 Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 Y I++ + + R L Q ++ Sbjct: 107 GAMGYILKDVPTDEIKLAIDTVMRGERY----------LCTGAQGSLEPKDAARES---- 152 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE L +++GK++ E+A L IS TV + +I RK + +G YA+ + + Sbjct: 153 LTEREQTILLQLAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212 Query: 246 V 246 + Sbjct: 213 L 213 >gi|317970291|ref|ZP_07971681.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 228 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%) Query: 79 SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138 S P++L+ C E +++ ++ + + P + V Sbjct: 65 LSQEPYELLICTDFLESGSGFDLARKA------------KALQPQLKVVMLALGDAIPVE 112 Query: 139 RIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGK-----DFELTGREVE 192 + + D+ E +LA + ++S + G+ LT RE E Sbjct: 113 HAEASWLEAVVAEADFIEDQKPLEAAVLAVMGHHAYRSPSLRSGQLPYLSCPRLTPREYE 172 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G T EIA L +S T Y +++ R A+ +R +V Sbjct: 173 VLDLLASGLTDREIAEQLVVSEETARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226 >gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 199 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 38/61 (62%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT E+E L IS+ ++++I+ L ISR TV+ ++++I K +R GA+ A++ + Sbjct: 139 LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIKLKL 198 Query: 246 V 246 + Sbjct: 199 I 199 >gi|152964708|ref|YP_001360492.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359225|gb|ABS02228.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 204 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 5/165 (3%) Query: 82 WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141 WP + + + + ++ L PE A M + VA Sbjct: 44 WPVERPSLVIMDVRMPGIGGVEAARRLLA----RHPEANVLMATMAEDGDGVARAVASGA 99 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 G ++ + L + ++ + ++ V G+ LT RE + L +S G+ Sbjct: 100 RGYLVKDVSREELATAVLQALQDVSRRRGG-NRTRAVLTGRAPVLTEREQQVLVGMSRGR 158 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ EI L +S +TV + + RK R+ A+A R +V Sbjct: 159 SNAEIGRELFLSEDTVKTHARRLFRKLEAADRAQAVAVGFRWGLV 203 >gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33] gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33] gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84] gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7] gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407] gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33] gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33] gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84] gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407] gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7] gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14] Length = 200 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +LA + + D+ + LT E + L ++EG ++ EIA L +S TV NY+ S Sbjct: 117 VLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTS 176 Query: 224 IMRKTATKTRSGAIAYAVRNN 244 I+ K + R+ A+ A Sbjct: 177 ILSKLGAENRTAAVKVAQEKG 197 >gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 510 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 188 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 7/170 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V +D + + L+ + V + + F + Y Sbjct: 21 DVVLADIRMPGIDGLELTRRLAGPEVADKLRVVVVTTFDLDEYVYSALRDGACGYLLK-- 78 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 R G LL R + + + L+ RE+E + Sbjct: 79 -----RSGPTLLVEAIRAAMTGDTLISPQITVRLLREMMRPEPKSADTSVLSERELEVVA 133 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +++G T+ EIA L IS T N++A++ K R G A+A + Sbjct: 134 LVAQGLTNAEIAEKLFISAGTAKNHLANVQAKLGVGNRVGIAAWAWETGV 183 >gi|251795472|ref|YP_003010203.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|304408019|ref|ZP_07389669.1| transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|247543098|gb|ACT00117.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] gi|304343038|gb|EFM08882.1| transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 74 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K RS A+ ++ Sbjct: 10 FLLTHREREVFELLVQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKL 69 Query: 244 N 244 Sbjct: 70 G 70 >gi|62289334|ref|YP_221127.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699262|ref|YP_413836.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|189023586|ref|YP_001934354.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|237814824|ref|ZP_04593822.1| LuxR family DNA-binding response regulator [Brucella abortus str. 2308 A] gi|254696773|ref|ZP_05158601.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 2 str. 86/8/59] gi|254729682|ref|ZP_05188260.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 4 str. 292] gi|260545913|ref|ZP_05821654.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260757346|ref|ZP_05869694.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761170|ref|ZP_05873513.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|62195466|gb|AAX73766.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82615363|emb|CAJ10326.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189019158|gb|ACD71880.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|237789661|gb|EEP63871.1| LuxR family DNA-binding response regulator [Brucella abortus str. 2308 A] gi|260097320|gb|EEW81195.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260667664|gb|EEX54604.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671602|gb|EEX58423.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] Length = 213 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 36/69 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + K L+ RE + L ++EG ++ EIA LGIS TV + +I +K + +G Sbjct: 140 ESGEKKSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGL 199 Query: 237 IAYAVRNNI 245 YA+ N + Sbjct: 200 TRYAIENRL 208 >gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6] Length = 215 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 95 VFALIDAGADGYLLKDSDPEVLLEAIRTGAKGNKVFSERVNQYLRER------------- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199 Query: 232 TRSGAIAYAVRNN 244 +R A ++ Sbjct: 200 SRVAATILFLQQR 212 >gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 217 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ Y M + L+ RE E L+ ++G + E+A +L IS TV + ++ Sbjct: 134 LMKEYVDRMQRGDSGDL--FHALSEREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSN 191 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 +M K K+R I YA++ ++ Sbjct: 192 VMEKLGLKSRPELIKYAMKKGLL 214 >gi|258592075|emb|CBE68380.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 89 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 +D + + LT REVE LTW+++GKT+ EI IL S TV ++ I K Sbjct: 10 HDNIFSERLGLTRREVEVLTWVTDGKTNAEIGEILDTSPRTVQKHLEHIFEKLGV 64 >gi|238059423|ref|ZP_04604132.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881234|gb|EEP70062.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 970 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 R + VA+ L + R R+ A+ + + L Sbjct: 851 AGRLLREAYQVAQGLGAEPLSTEIRTLAARARVALEERGASADGRSVTRAEPVGDELAVL 910 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 T RE E L ++EG T+ EI L IS T+ +++ I K +TR A A +RN Sbjct: 911 TTREREVLAAVAEGLTNKEIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNR 968 >gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 215 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 7/164 (4%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 L+ + + +V P + L E + R L D + Sbjct: 58 MPLMDGIEATRLLAGPDVTD-PLPIVVITTFDLDEYVHGALKAGARGFLLK-DAGPALLT 115 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202 + D L + A ++ + E LT RE E L +++G+T Sbjct: 116 QAIHAAADG----DALIAPSVTVRLLAAFAQAPTSPPRQPLEPLTAREEEVLVTVAQGRT 171 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + EIA L I+ +TV ++AS+MRK + R +A + Sbjct: 172 NSEIASQLFITSSTVKAHVASLMRKLGARNRVEVAMWAHETGRI 215 >gi|4322356|gb|AAD16025.1| regulatory protein CsgD [Escherichia coli] Length = 83 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 LA+Y +Y + + LT RE E L + G +++EIA L IS NTV ++ ++ Sbjct: 2 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 61 Query: 225 MRKTATKTRSGAIAYA 240 +K A K R+ A+++A Sbjct: 62 FKKIAVKNRTQAVSWA 77 >gi|297156203|gb|ADI05915.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 1003 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%) Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173 LPE+ + + ++ ++ + + GR + R A+ Sbjct: 879 QRLPESRETAGELLRQAEAVARELGAAPLETEITTLAGRARIPLR----------HADEE 928 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + LT RE + L ++ G+++ +IA L IS T + ++++IM K R Sbjct: 929 TAPPPTPAAALGLTARERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNIMAKLGASGR 988 Query: 234 SGAIAYAVRNN 244 A A A R Sbjct: 989 GEAAAIAHRLG 999 >gi|282801728|gb|ADB02831.1| AzicR2 [Kibdelosporangium sp. MJ126-NF4] Length = 214 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 +LA A + S V L+ RE+E L ++EG T+ E A L ++ T+ +++ Sbjct: 124 AVLAPSAAALLMSR-VRASAAGPLSQRELEVLHLVAEGATNREAAARLFLTEATIKSHLL 182 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +I K R+ A+ ++ Sbjct: 183 NIYGKLGVSDRAAAVTAGFNRGLL 206 >gi|222082720|ref|YP_002542085.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727399|gb|ACM30488.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 217 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 166 AAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A M D + LT RE E L ++ G+T+ IA L IS TV ++ Sbjct: 129 ADLMCKMLARIDRESPAEMVIERLTNREREILCSLTTGETNKGIARALSISPGTVKVHVE 188 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I+ K R+ A A++ ++ Sbjct: 189 RILSKLGVNDRTQAAVLAIQAGLL 212 >gi|331694595|ref|YP_004330834.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|331696119|ref|YP_004332358.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949284|gb|AEA22981.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] gi|326950808|gb|AEA24505.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 214 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L + A+ + + D + L+ +E L +++G T+ +I L ++ TV Sbjct: 126 LLDPKATASVLERLRRGEDTEDPRYAGLSPQERRILDLVADGLTNKQIGAELFLAEKTVK 185 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244 NY++S++ K R+ A YA R Sbjct: 186 NYVSSLLHKLGFSRRTEAAVYAERRR 211 >gi|120404927|ref|YP_954756.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] gi|119957745|gb|ABM14750.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] Length = 399 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 +VH LT REVE L ++ G+T+ +IA L IS TV +++ ++RK R+ A Sbjct: 325 EVHTRVLGMLTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEA 384 Query: 237 IAYAVRNNI 245 + VR I Sbjct: 385 ASAYVRLAI 393 >gi|308272248|emb|CBX28854.1| hypothetical protein N47_B20000 [uncultured Desulfobacterium sp.] Length = 225 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E L ++EG I L IS TV N+ A+IM K + + YA + + Sbjct: 158 LTPREQEVLRLLAEGMAPKAIGEKLFISPKTVENHRANIMSKLDLHSILDLVRYAAKVGL 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|256783407|ref|ZP_05521838.1| LuxR family transcriptional regulator [Streptomyces lividans TK24] Length = 175 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G ++ I L IS T + ++++I+ K +R+ A+A A R + Sbjct: 107 LTAREQDVLRLLALGHSNRRIGEELFISAKTASVHVSNILAKLNAASRTEAVAVAHRQGL 166 Query: 246 V 246 V Sbjct: 167 V 167 >gi|88855004|ref|ZP_01129669.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815532|gb|EAR25389.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 221 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 4/155 (2%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 +E+ L + F + + + + + ++ Sbjct: 65 ATEQIATIPELSETRIVVVTTFEVDEYVARAIRAGASGFLVKDTEPVELIRAVRVVASGD 124 Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 ++ LL + + D T RE E L + +G T+ EI V L Sbjct: 125 ALLSPGVTKR--LLERFARGSQVAVDASVLSVI--TDREREVLALVGQGLTNAEIGVKLF 180 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +S T +++ IM K A + R + A +V Sbjct: 181 LSPLTAKTHVSRIMAKLAARDRVQLVVIAYETGLV 215 >gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 510 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|219667288|ref|YP_002457723.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537548|gb|ACL19287.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 215 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 37/86 (43%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 + L +M+ + LT RE E L +I+ G T+ EI L +S TV + Sbjct: 128 DSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKEIGESLSVSVKTVETH 187 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 A IM K RS + YA+ + Sbjct: 188 KARIMEKIQCHKRSDLVRYAIEQGYI 213 >gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+ S V K+F LT RE E L+ ISEG T+ EIA L IS +TVN++ Sbjct: 125 LSPVIKQAMSSERVGLQKNFPPLTRREKEVLSLISEGNTNAEIAEKLFISADTVNSHRKK 184 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 ++ K K + I YAV N ++ Sbjct: 185 LLAKLEVKNTAMLIKYAVDNKLL 207 >gi|289425149|ref|ZP_06426926.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289426574|ref|ZP_06428314.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295130635|ref|YP_003581298.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|289154127|gb|EFD02815.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289160218|gb|EFD08382.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377220|gb|ADE01075.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|313764411|gb|EFS35775.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772207|gb|EFS38173.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792097|gb|EFS40198.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313801951|gb|EFS43185.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313807563|gb|EFS46050.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810072|gb|EFS47793.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313812898|gb|EFS50612.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815948|gb|EFS53662.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818604|gb|EFS56318.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313825246|gb|EFS62960.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313827534|gb|EFS65248.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313830402|gb|EFS68116.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313833772|gb|EFS71486.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313838777|gb|EFS76491.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915403|gb|EFS79234.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918316|gb|EFS82147.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920126|gb|EFS83957.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314931648|gb|EFS95479.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955704|gb|EFT00106.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958103|gb|EFT02206.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314959957|gb|EFT04059.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314962754|gb|EFT06854.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314967878|gb|EFT11977.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314973404|gb|EFT17500.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314976083|gb|EFT20178.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314978528|gb|EFT22622.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314983897|gb|EFT27989.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988079|gb|EFT32170.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989886|gb|EFT33977.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315077971|gb|EFT50022.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315080596|gb|EFT52572.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315084266|gb|EFT56242.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085610|gb|EFT57586.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088338|gb|EFT60314.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095949|gb|EFT67925.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315098580|gb|EFT70556.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101419|gb|EFT73395.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108635|gb|EFT80611.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326231|gb|EGE68021.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA2] gi|327331894|gb|EGE73631.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA3] gi|327443096|gb|EGE89750.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327445878|gb|EGE92532.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448140|gb|EGE94794.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327450738|gb|EGE97392.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327453185|gb|EGE99839.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327453920|gb|EGF00575.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753426|gb|EGF67042.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328754157|gb|EGF67773.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328754593|gb|EGF68209.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328760809|gb|EGF74375.1| DNA-binding response regulator VraR [Propionibacterium acnes HL099PA1] gi|332675478|gb|AEE72294.1| nitrate/nitrite response regulator protein NarP [Propionibacterium acnes 266] Length = 210 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G LA A + LT RE++ L ++G ++ +IA L +S TV +++ Sbjct: 128 GALAPAVATRLMAR--MRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +RS A+A A + Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGFI 209 >gi|302532622|ref|ZP_07284964.1| two-component system response regulator [Streptomyces sp. C] gi|302441517|gb|EFL13333.1| two-component system response regulator [Streptomyces sp. C] Length = 226 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 71/178 (39%), Gaps = 11/178 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDN 128 ++ + P ++ + + + D VL++ EL P F T +T + Sbjct: 40 DVIRRELPDVVLLDIRMPDVDG-LTVLRQIQELPEPPHVAMLTTFDTDEYILTALRSGAS 98 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + + ++ + L G ++ LL + D + L+ Sbjct: 99 GFLLKDTEPEQLAQLVRTLAAGGVVMSPKASR--ALLRGHPG-AGAPQDADVARVGLLSD 155 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE + L I++G ++ +I + +S+ TV ++++SI+ K +R A A R ++ Sbjct: 156 RERDVLVLIADGLSNADIGTRIHLSQGTVKDHVSSILTKLRVTSRVQAALLAERAGLL 213 >gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 E+T RE E L ++ G ++DEIA L IS T +++ IM K + R+ + A + Sbjct: 155 EITDREREVLGLVAGGMSNDEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVLAYESG 214 Query: 245 IV 246 +V Sbjct: 215 LV 216 >gi|298242939|ref|ZP_06966746.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555993|gb|EFH89857.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 928 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 27/196 (13%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEK-----DKYYNVLQRPTELFCPVFHTLPENITPPA 124 + +++ P + + + + +++ +V++ ++ + H++ + Sbjct: 725 DVARARILLAQKMPTEALSLLDSLQVRAEKQERWSHVIE--MKVLQALAHSMCDEDREAC 782 Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---------GLLAAYQANMF-- 173 + + L RI + ++ R E LLAA+ + Sbjct: 783 AILAQAVQLAEPENYTRIFVDEGARMKALLSHLREQERKKGPTAYLDALLAAFSSESVTH 842 Query: 174 ---KSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 K D G+ E L+ RE+E L I+ G ++ +IA +L I+ +TV ++ I Sbjct: 843 ISPKGGDQSRGRIQERPLVEPLSERELEVLHLIARGDSNQKIAEMLMITLDTVKRHVTHI 902 Query: 225 MRKTATKTRSGAIAYA 240 K R A+A A Sbjct: 903 FEKLGVSNRVQAVARA 918 >gi|297190931|ref|ZP_06908329.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150692|gb|EFH30738.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 83 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 M + D + E LT RE E + G T++EIA + IS T +I+ M K Sbjct: 1 MARPPDRSTARGMENLTRREREVTALAARGLTNEEIAAHMVISPFTAKTHISRAMNKLGA 60 Query: 231 KTRSGAIAYAVRNNIV 246 + R+ + +A + +V Sbjct: 61 RDRAQLVVFAYESGLV 76 >gi|256379677|ref|YP_003103337.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923980|gb|ACU39491.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 953 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L + A + + +V G+ T RE L ++ G+T+ E+ L IS TV+ Sbjct: 862 LRDAVRQTARRGRVVLRGEVPGGQVDPFTPRERSVLALVALGRTNREVGEELVISEKTVS 921 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ IM K R A+A A ++ Sbjct: 922 VHLTRIMAKLGAGRRGEAVAIAFERGLL 949 >gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 90 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 41/67 (61%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+GRE++ + +S G T+ EIA L IS+ TV+N+I++I+ KT T+ R + Sbjct: 4 AKFQNPVSLSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELV 63 Query: 238 AYAVRNN 244 +A++ Sbjct: 64 RWALQWG 70 >gi|87302655|ref|ZP_01085472.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] gi|87282999|gb|EAQ74956.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] Length = 237 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 R L+ ++ E L S D L+ Sbjct: 115 EASCDGICADRGVGFGHLVAATRAVLGGGFYMEPQLRDLLALACRASRDPAGP---GLSA 171 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 RE+E L + +G + +IA + +S TV +++ S +K R+ A AV +V Sbjct: 172 RELEVLELVVQGYQNPQIASRMHLSVETVRSHLKSAFQKLGATGRTHAAVMAVCQGLV 229 >gi|94314084|ref|YP_587293.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357936|gb|ABF12024.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L +++G + EIA L +SR TV +I I RK A +R+ AI A + Sbjct: 170 LSPREHQILRLVADGLGNREIAERLFLSRYTVECHIKHIYRKLAVSSRTRAINAARSRGL 229 Query: 246 V 246 + Sbjct: 230 L 230 >gi|298250270|ref|ZP_06974074.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548274|gb|EFH82141.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 596 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 42/85 (49%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L ++G L Y + + + + + T RE E + + +G ++ EIA L IS Sbjct: 492 LPQADNQLGNLTNYYSAVQTTPTLKHARRELFTQRENEVINLLLQGASNREIAAKLIISE 551 Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239 TV ++A+I K K+R+ A+A Sbjct: 552 GTVKKHVANICGKLEVKSRTQALAK 576 >gi|288961577|ref|YP_003451887.1| two-component response regulator [Azospirillum sp. B510] gi|288913857|dbj|BAI75343.1| two-component response regulator [Azospirillum sp. B510] Length = 217 Score = 85.0 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 10/200 (5%) Query: 45 WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV-RCMALSEKDKYYNVL- 102 + + L E + + F E LD S D +DLV + + + + Sbjct: 12 FREGLRRLLEQL-RENATFAEASNFDE-LLDMAASKDEAYDLVLTDLRMPGWPGFSGIGM 69 Query: 103 ---QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRD 157 ++P V + ++ A + Y + V + L L+F G + Sbjct: 70 LRDRQPNAKVVVVSASEAQSDVREALENGAAGYIPKSSSVKIMLSALDLIFSGGVYVPAT 129 Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 L E G ++ + LT R+ E L + EGK++ +IA LG+S TV Sbjct: 130 VLRE-GAEPDQRSGGGVIPPTDPQLEQLLTQRQREVLDRLREGKSNKQIAHELGLSEGTV 188 Query: 218 NNYIASIMRKTATKTRSGAI 237 ++ +I + + R+ A Sbjct: 189 KIHMTAIFKSLGVRNRTQAA 208 >gi|327330788|gb|EGE72534.1| two-component system response regulator [Propionibacterium acnes HL097PA1] Length = 83 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%) Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 M + V K +LT RE+E ++ G ++ EIA L +S TV ++++ + K + Sbjct: 1 MHQGGTVTGSKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLR 60 Query: 232 TRSGAIAYAVRNNIV 246 R +A A + ++ Sbjct: 61 DRVQLVALAYESGLI 75 >gi|326443616|ref|ZP_08218350.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 1016 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL + + G LT RE + L +S G+++ +IA L IS T Sbjct: 922 RLALPASASGPDGPHGPAAAPEPGPGLGLTPREEDVLRLVSAGRSNRQIAQTLSISPKTA 981 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 + ++++I+ K R A A A R + Sbjct: 982 SVHVSNILAKLGVSGRGEAAALAHRLRL 1009 >gi|320322570|gb|EFW78663.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330177|gb|EFW86163.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875366|gb|EGH09515.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987495|gb|EGH85598.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 209 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 D+ G LT R+ E L ++ GKT+ EIA LGIS TV +++S+++ TRS Sbjct: 137 SDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVSTRSA 196 Query: 236 AIA 238 A A Sbjct: 197 AAA 199 >gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 212 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 13/157 (8%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFP 149 L ++ R + T + G++ L + Sbjct: 64 LDGVGATAEIVARHPRTRVLILTTYDTDQDIERGVEAGAIGYLLKDTTREQLADAIRSAA 123 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 +G +L R+ E L+A + LT RE + L +++G T+ EI Sbjct: 124 RGETVLAPRVAE-KLIAR----------MRRPVQDPLTARETDVLNAVADGLTNAEIGKR 172 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L I+ TV ++ + K R+ A+ A+ ++ Sbjct: 173 LVITEATVKTHLLRLFAKLDVNDRTRAVVVALERGLL 209 >gi|300779885|ref|ZP_07089741.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533995|gb|EFK55054.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 222 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT REVE L I+ G T+ EI+ L I+ TV ++ +++ K + R + A R I Sbjct: 161 LTAREVEVLAEIAAGATNAEISQRLFIAPTTVKTHVKNLLVKLGARDRVALVLLAHRAGI 220 >gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] Length = 223 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 6/174 (3%) Query: 78 VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 V + P ++ + + + D + +E+ + T ++ + + Y Sbjct: 43 VRKNRPDVILMDIRMPKMDGVQCTKIIKDNYSEIKIIILTTFDDDEYVYNALKWGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + ++ +I D ++ L + A DV + LT E Sbjct: 103 LKGVSMDGLTNAIRTVYSGQAMINPDIATKVVRLFSQMAKADYVVDVDQKRTENLTKTEW 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + + + G ++ EIA L +S TV NY++ I+ K + R+ +AV+N + Sbjct: 163 KIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFRDRTQLAIWAVQNKV 216 >gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 242 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 21/184 (11%) Query: 83 PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITP------PAGMDNRYCSL 133 P ++ + + D Y + + PV + +T AG+D+ Y Sbjct: 59 PDVVISDVMMPRCDGYGLLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDD-YIPK 117 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD--- 183 FD + + + + +L + ++ +A +M D + K Sbjct: 118 PFDPDELIARVRNVVKRQERLLTEAARFADTDVSQMAKQITEIRSMLTQGDKNNSKKDLI 177 Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 T RE L ++EG + EIA L S V Y++ + KT T +R+ + YA+ Sbjct: 178 IPNFTPREESVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237 Query: 243 NNIV 246 NN+V Sbjct: 238 NNLV 241 >gi|332669618|ref|YP_004452626.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338656|gb|AEE45239.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 224 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 11/145 (7%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + + Y + D + + + + L Sbjct: 87 RFLALSVSDAAEDVVAVIRSGARGYVTKAIDGGELSDAVRRVAGGDAVFSP-------RL 139 Query: 166 AAYQANMF--KSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 A + + F + DV G D L+ RE E + I+ G T E+A L IS TV ++ Sbjct: 140 AGFVLDAFGAAAGDVATGDDELDRLSAREREVMRLIARGYTYREVASELFISVKTVETHV 199 Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246 ++++RK +R +A ++ Sbjct: 200 SAVLRKLQLSSRHELTRWAAARRLL 224 >gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 491 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELT 187 Y + D+ + + L +++D W L AN + +LT Sbjct: 371 YLLVLMDITERKRSELELVEAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLT 430 Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 RE + L I EG EIA L ++ NTV N++A++ K +RS AI +A + Sbjct: 431 RRERDVLALICEGLADKEIAARLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488 >gi|315181312|gb|ADT88226.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 216 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R LL Y+ H ELT RE++ L + G ++ ++A L IS T Sbjct: 130 PRHVSSQLLHYYRHIF---QHHHTQATIELTTRELQILRSLQTGASNMQMAESLFISEFT 186 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243 V +++ I +K + K R+ AI +A +N Sbjct: 187 VKSHLYQIFKKLSVKNRTQAITWANQN 213 >gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 74 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 + ELT RE E + I++G ++ EI+ L IS TV YI IM K ++R AY Sbjct: 7 NNSELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAAYYF 66 Query: 242 RN 243 +N Sbjct: 67 QN 68 >gi|269216845|ref|ZP_06160699.1| putative HTH-type transcriptional regulator MalT [Slackia exigua ATCC 700122] gi|269129652|gb|EEZ60736.1| putative HTH-type transcriptional regulator MalT [Slackia exigua ATCC 700122] Length = 787 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT E++ L I + K++ EI +LGI +TV +++ I+ K R A A R + Sbjct: 726 PLTKTEIQVLHLICQDKSNVEIGELLGIKLSTVKTHVSHILAKLGVSRRVQAAREARRLH 785 Query: 245 IV 246 +V Sbjct: 786 LV 787 >gi|11344597|gb|AAG34369.1|AF197465_1 nitrate/nitrite response regulator [Pseudomonas fluorescens] Length = 215 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205 LL R L L L A +S D ELT RE + L I+ G ++ Sbjct: 115 LLIQYIRDALNGALVISPGLTRVMAQALRSP--PRQADVELTERERQVLKTIAGGYSNKV 172 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 I LGI+ TV ++ +++ K ++R A +A+ + Sbjct: 173 IGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210 >gi|21230300|ref|NP_636217.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769706|ref|YP_244468.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992921|ref|YP_001904931.1| Putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21111849|gb|AAM40141.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575038|gb|AAY50448.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734681|emb|CAP52891.1| Putative transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 235 Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIG----LLAAYQANMF 173 + PP + R L + +G++ + + D L + LL A A Sbjct: 96 LMPPRPAEMRDARLPIQLLGTTLGMVCVAWNDGRLAPGSDDLQALQAFALLLPAMVAEPA 155 Query: 174 KSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + K + L+ RE + L+ + G T+ +A LGIS TV ++ I++K Sbjct: 156 RPVATRRRKAVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQK 215 Query: 228 TATKTRSGAIAYAVRNNI 245 K R+ A YAV + Sbjct: 216 LEVKDRTQAAVYAVHAGL 233 >gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 218 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221 GL+ + ++ D + LT RE E L ++++G ++ +IA L +S TV N++ Sbjct: 134 AGLVLGEYRRIAQTADSSQDRP-SLTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHV 192 Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245 + RK R YA+ + + Sbjct: 193 QATFRKLQLANRVELTRYAIEHGL 216 >gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326] gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 11/114 (9%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184 + Y + + L L + ++ +A Y A+ S DV Sbjct: 98 AGADGYLLKDTEPDELVDLLKLSLRGNKAYSQE-------VAKYLADRENSSDV----FD 146 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 ELT RE++ L +++G + +IA L IS +TV ++ S+++K +R+ A Sbjct: 147 ELTDREMQILREVAKGDRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATV 200 >gi|260425367|ref|ZP_05779347.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] gi|260423307|gb|EEX16557.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] Length = 242 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 77/243 (31%), Gaps = 31/243 (12%) Query: 26 LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW-----DLFQEQKLDSIVSS 80 +P L ++ + AL + H L+ W + + D + Sbjct: 7 IPVTGGFLEQLELAERREDLQSVAEALRDRFKVDH-LVYHWVSANGEQYGCGTYDPV--- 62 Query: 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRY 130 V + V+Q + F PV + G+ N+ Sbjct: 63 -----WVERYLEKGYLRIDPVIQGCFQRFHPVDWKRLDWSSKAARAFQWDAIAHGVGNQG 117 Query: 131 CSLTFDVARIRIGLMLLFPKGR-----IILRDRLWEIGLLAAY--QANMFKSYDVHWGKD 183 S+ + L + ++ L+A Y Q + Sbjct: 118 YSIPIRGPNGQFALFTVNHSCDDEAWAEFTALNRRDMILIAHYFNQKALELEPGRRPEPA 177 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E +T I+ G + ++A L IS +T+ YI S K + A+A A+ Sbjct: 178 QPLSPREIEAMTLIAVGYSRAQVAETLSISEHTLRVYIESARFKLGAMNTTHAVARALSR 237 Query: 244 NIV 246 ++ Sbjct: 238 GLI 240 >gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 211 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%) Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 ++ S V G EL+ RE E L S G S EIA L IS TV ++ASI K Sbjct: 126 DLEASDLVSSGPTEELSQREREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGA 185 Query: 231 KTRSGAIAYAVRNNIV 246 + ++ A+ +++ I+ Sbjct: 186 RNKTEAMLLGLKHGIL 201 >gi|197123248|ref|YP_002135199.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220918037|ref|YP_002493341.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196173097|gb|ACG74070.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219955891|gb|ACL66275.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 215 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + Y F A + + + + R ++ LL ++ + D Sbjct: 95 RAGASGYILKPFHAADLTKAVEDVLSGEAAPISPRAAKV-LLQEFRGD---PPDQRAKDG 150 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L + G T ++A LGI+ TV Y+ I K T++ A AV Sbjct: 151 PALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVAR 210 Query: 244 NIV 246 +V Sbjct: 211 GLV 213 >gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 16/217 (7%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R+ D + + AL + G V + Q L +++ ++ + + Sbjct: 5 RIALADDQILVRAGLRALLQQQGVE----VACEADDGQALLDALTTTSVDVVLSDIRMPG 60 Query: 95 KDKYYNVLQ-RPTELFCPVF----HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 D ++Q R PV + + + L + Sbjct: 61 VDGIQALVQLRARGDRTPVLLLTTFDDSDLLLRATEAGAQGFLLKDAAPEDLRDAIARVA 120 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 G +L+ + + + + REV L ++ G ++ EIA Sbjct: 121 AGETLLQPVSTDPVRARYQFRDQQPPSET-------FSEREVAILRLLAGGYSNKEIART 173 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ TV NY+++I+ K T+ R+ A+ A+ ++ Sbjct: 174 LFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|302549505|ref|ZP_07301847.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467123|gb|EFL30216.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 L+ + A + + ++ + +T RE E L ++EG TS +IA +L IS TV Sbjct: 130 LYPGAVNALVRDFLDRAREGRALPSRAITDREEEILKLVAEGHTSQQIADLLVISPKTVE 189 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246 + A++++K K R YA+R ++ Sbjct: 190 RHRANLLQKLGLKDRLELTRYAIRVGLI 217 >gi|239816522|ref|YP_002945432.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803099|gb|ACS20166.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 1022 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 37/68 (54%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + L+ RE+ L + G ++ IA L IS +TV +++ I+ KT ++R+ A Sbjct: 948 MPSASPEGLSRRELAVLRLLCAGCSNQAIAERLFISPHTVAHHVRHILSKTDCRSRTEAA 1007 Query: 238 AYAVRNNI 245 A+A R+ + Sbjct: 1008 AWAHRHRV 1015 >gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] Length = 416 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 14/100 (14%) Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------------ELTGREVECLTWI 197 R+++ + L LA S + K +LT RE + L + Sbjct: 137 RLLMHEELHLPCFLADKMHAAPGSPNTPVEKQPATRTRSPEKLLLYSQLTRREKQVLRLV 196 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 S+GK++ IA LGI+ +TV ++ ++ K R+ A Sbjct: 197 SQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAAA 236 >gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] Length = 192 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 44/86 (51%) Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220 EI + Q ++ + + EL+ RE + L I +G T+ EIA L IS NTV ++ Sbjct: 100 EIIIEQMEQLFTGENNSISSENNKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSH 159 Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246 +I K KT SG YA+ N I+ Sbjct: 160 RKNITTKLGIKTVSGLTFYAIMNGII 185 >gi|54022748|ref|YP_116990.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014256|dbj|BAD55626.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D LT RE E L ++EG +S IA L IS TV+ + A+I++K + R YA+ Sbjct: 153 PDNILTAREEEILKLVAEGYSSRGIADTLVISVKTVDRHRANILQKLGLRDRLALTRYAI 212 Query: 242 RNNIV 246 R ++ Sbjct: 213 RVGLI 217 >gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 87 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 41/62 (66%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 L+ RE++ + +++G T+++IA L IS+ TV+N+I++I+ KT+T R + +A++ Sbjct: 9 HTSLSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRVELVRWALQ 68 Query: 243 NN 244 Sbjct: 69 WG 70 >gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 214 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 10/154 (6%) Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 A+SE + + ++ + I + Y I + + Sbjct: 62 AMSEILRAHPDVRFVVFTALGSEARAADAI---RLGASGYLLKWCSPDGIVQAVRRVMAG 118 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 I + +A+ V ELT RE + L I++G + EIA +L Sbjct: 119 RVHIDPS--LDGARIASAAGGRTPPSPVD-----ELTRREKQVLKLIADGMRNREIASLL 171 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 IS TV+ + +M+K + + I +A R Sbjct: 172 NISPKTVDCHRQRLMQKLGARNVANVIHWAYRYG 205 >gi|74318482|ref|YP_316222.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057977|gb|AAZ98417.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92 L R+I +D + + L E G + E + ++ + P L+ + + Sbjct: 3 LTRIILVDDHTLFRKGLAELLEQSGEIE-VTAFTGNPDEVAM--LLKAHRPDVLILDLNM 59 Query: 93 SEKDKYYNVLQ-RPTELFCPVF-----HTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146 D + Q R P+ T + N Y + + + ++ Sbjct: 60 PGTDGITLMQQLRNAGFALPILILTLSETEDDLARALRAGANGYLLKSMEPDEVVDAILR 119 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205 ++ + A ++ G + LT RE E L+ +S G+++ Sbjct: 120 AQRGETVVAP-------AMTAKLVKLYDQKGQDAGSLLDALTPREREILSHLSRGESNKA 172 Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 IA L IS +TV ++ I+ K +R A +AV + + Sbjct: 173 IARTLDISHDTVKLHVRHILAKLNLSSRVEAAVFAVEHKV 212 >gi|21220978|ref|NP_626757.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|6752360|emb|CAB69738.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 227 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 157 DRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 D L G A +S L+ RE + LT ++ G + EIA LG+S Sbjct: 121 DALLSPGPTARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLS 180 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T +++ IM K + R+ + A + +V Sbjct: 181 PLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 213 >gi|294815261|ref|ZP_06773904.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294327860|gb|EFG09503.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 1034 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%) Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217 RL + + G LT RE + L +S G+++ +IA L IS T Sbjct: 940 RLALPASASGPDGPHGPAAAPEPGPGLGLTPREEDVLRLVSAGRSNRQIAQTLSISPKTA 999 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 + ++++I+ K R A A A R + Sbjct: 1000 SVHVSNILAKLGVSGRGEAAALAHRLRL 1027 >gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] Length = 205 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%) Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 +L+D L + A + ELT RE++ L +++G + +IA L IS Sbjct: 111 LLKDSLRGNKAYSQEVATYLAERENTSSVFDELTDREMQILKEVAKGLRNKQIADTLFIS 170 Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238 +TV ++ S+++K +R+ A Sbjct: 171 ESTVKVHMKSLLKKLQVPSRTAATV 195 >gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 29/188 (15%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITPP------AGMDNRYCS 132 P ++ + + + Y +L++ E PV + +T AG+D+ Y S Sbjct: 59 PDLIISDIMMPRSNGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDD-YIS 116 Query: 133 LTFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDV 178 FD + + + + +L++ ++ EI + Q + K + Sbjct: 117 KPFDPDELSARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPLNKENSI 176 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 T RE L ++EG + EIA L S V Y++ + KT+T +R+ + Sbjct: 177 DIP---SFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTSTSSRTELVR 233 Query: 239 YAVRNNIV 246 YA+ N++V Sbjct: 234 YALENHLV 241 >gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 12/216 (5%) Query: 34 ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPFDLVRCM 90 R+ D + + AL + G ++ D Q + V + + Sbjct: 4 RRIALADDQILVRAGLRALLQQQGVE--VVCEADDGQGLLDALAIHTVDVVLSDIRMPGL 61 Query: 91 ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 + ++ T + + + + + L + Sbjct: 62 DGIQALEHLRARGDRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAIERVAA 121 Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210 G +L+ ++ + + REV L ++ G ++ EIA L Sbjct: 122 GDTLLQP-------VSTDPVRARYQFRDQQAPRETFSEREVAILRLLAGGYSNKEIARTL 174 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ TV NY+++I+ K T+ R+ A+ A+ ++ Sbjct: 175 FLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|254693131|ref|ZP_05154959.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 3 str. Tulya] gi|261213372|ref|ZP_05927653.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260914979|gb|EEX81840.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 213 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 + + L+ RE + L ++EG ++ EIA LGIS TV + +I +K + +G Sbjct: 140 ESGEKRSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGL 199 Query: 237 IAYAVRNNI 245 YA+ N + Sbjct: 200 TRYAIENRL 208 >gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] Length = 505 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 12/175 (6%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 F + R + + F + + ++ + D ++ Sbjct: 330 FFIQRDIKYDAMQIPIIQILEARYSLSTTFAMIRQCDECDLIVEAYHSEKIADPQKLYYQ 389 Query: 144 LMLLFPK-GRIILRDRLWEIGL-------LAAYQANMFKSY----DVHWGKDFELTGREV 191 + F + + L L EI LA + F++ +LT RE+ Sbjct: 390 IRDTFEQFICLFLDAMLPEIKTALPNQKWLALFNDQEFRNNVIMRKAVKKPLTQLTPREL 449 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +CL+ IS+G T +I+ L +S TVN + SI K + A++ A R ++ Sbjct: 450 QCLSMISKGMTIKKISEYLHLSSETVNTHAKSIRTKMNCVNITEAVSKAFRLGLL 504 >gi|145294782|ref|YP_001137603.1| hypothetical protein cgR_0730 [Corynebacterium glutamicum R] gi|140844702|dbj|BAF53701.1| hypothetical protein [Corynebacterium glutamicum R] Length = 230 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 29/156 (18%) Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166 L V + I G Y + + + + + LA Sbjct: 76 FLALSVSDAAEDVIAIIRGGARGYVTKSISGEELVEAINRVKSGDAFFSP-------RLA 128 Query: 167 AYQANMFKSYDVHWGKDF----------------------ELTGREVECLTWISEGKTSD 204 + + F + D G LT RE+E L ++ G T Sbjct: 129 GFVLDAFAAPDSAAGAGIVDAPEKDAAVESGKILDDPVVDALTRRELEVLRLLARGYTYK 188 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 EI L IS TV + ++I+RKT R +A Sbjct: 189 EIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224 >gi|89902955|ref|YP_525426.1| ATP-dependent transcription regulator LuxR [Rhodoferax ferrireducens T118] gi|89347692|gb|ABD71895.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Rhodoferax ferrireducens T118] Length = 894 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE + L ++ G+++ E+A + IS TV ++ SI K + R A+ A + Sbjct: 832 LTERERDVLMLVASGQSNKEVARSMNISAETVKTHLKSIFGKLGVQQREQAVVLARAVGL 891 Query: 246 V 246 + Sbjct: 892 I 892 >gi|71906473|ref|YP_284060.1| LuxR response regulator receiver [Dechloromonas aromatica RCB] gi|71846094|gb|AAZ45590.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas aromatica RCB] Length = 221 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 4/146 (2%) Query: 99 YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 + L V + + + Y + + + ++ + Sbjct: 73 SEEMPEVRVLMLTVSEDAQDLMDALRAGASGYLLKNIETDMLVDAIRRAAQGESVVSQQM 132 Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 ++ + + + RE + L +++G+++ EIA L ++ +TV Sbjct: 133 TAKL----IQGVRNPPKAETATIERDRFSPRERDILASLAQGESNKEIARKLDLAESTVK 188 Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244 ++ +I +K +R YAV N Sbjct: 189 IHVQNIFKKLNMSSRVQVALYAVENG 214 >gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A F+S D+ LT +EV L I+ G + EIA LGI+ TV +++ ++ Sbjct: 131 ARRLVRDFRSPDMRE----HLTPKEVLTLQLIARGHANREIAQELGITEATVKTHVSRLL 186 Query: 226 RKTATKTRSGAIAYAVRNNI 245 K +R+ A YA++ + Sbjct: 187 GKLGLTSRTQAALYALKAGL 206 >gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14] gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14] Length = 228 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212 I L A + LT RE + L +S G T+ +IA L + Sbjct: 137 AIHSAAAGRTALSAPVAHRVMARM---RSPRPTLTDRERDILGQLSRGLTNRDIAKALFL 193 Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 S TV ++ I K TR+GA+A A ++ Sbjct: 194 SEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 227 >gi|289772962|ref|ZP_06532340.1| multidomain-containing protein family [Streptomyces lividans TK24] gi|289703161|gb|EFD70590.1| multidomain-containing protein family [Streptomyces lividans TK24] Length = 780 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190 +L + R + F + + L ++ A+ + H G LT RE Sbjct: 665 TLMLGLGAERFTQVYTFGTRLPVPQ--LIDVACGNAHADDAAPPRHPHDGSPLGPLTPRE 722 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 E I EG T+ +IA L IS+ T + ++ I+ K +R+ A Sbjct: 723 REVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 770 >gi|73537441|ref|YP_297808.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134] gi|72120778|gb|AAZ62964.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia eutropha JMP134] Length = 947 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT +E + L ++EG ++ +A L +S TV ++ +I K R+ A+A A + Sbjct: 886 PLTPKEQKVLQLLAEGFSNVAMAQRLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLG 945 Query: 245 IV 246 ++ Sbjct: 946 LL 947 >gi|239943663|ref|ZP_04695600.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 183 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + G LT RE++ L +S G+++ EI L +S +TV + + +K R Sbjct: 110 RLRSAEMGAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDR 169 Query: 234 SGAIAYAVRNNIV 246 + A+A R +V Sbjct: 170 AHAVALGFRWGLV 182 >gi|149184470|ref|ZP_01862788.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831790|gb|EDL50223.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 140 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 39/116 (33%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 +L R G + + L + + + L+ RE Sbjct: 23 FALYGPRNRDAFGSAGFSSEPSELAEGVLTATHSILSSAHLQICRIMDRANPEISLSQRE 82 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L + GKTS EI IL IS TV Y + K R A A++ +V Sbjct: 83 RQVLELMGSGKTSVEIGTILAISPETVKTYTKRLYEKLEANDRVTATVRALKLGLV 138 >gi|77457134|ref|YP_346639.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77381137|gb|ABA72650.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 850 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + D L+ RE++ L I+ G ++ +IA L IS +TV ++ I K + R Sbjct: 778 EQVDEQSTTINPLSQRELKVLQLIAFGDSNLQIAEKLFISLHTVKTHVRRIHSKLGVERR 837 Query: 234 SGAIAYAVRNNI 245 + A+A A N+ Sbjct: 838 TQAVAKAKLLNL 849 >gi|21219837|ref|NP_625616.1| multidomain-containing protein family [Streptomyces coelicolor A3(2)] gi|8977921|emb|CAB95788.1| putative multi-domain regulatory protein [Streptomyces coelicolor A3(2)] Length = 780 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190 +L + R + F + + L ++ A+ + H G LT RE Sbjct: 665 TLMLGLGAERFTQVYTFGTRLPVPQ--LIDVACGNAHADDAAPPRHPHDGSPLGPLTPRE 722 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 E I EG T+ +IA L IS+ T + ++ I+ K +R+ A Sbjct: 723 REVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 770 >gi|331695485|ref|YP_004331724.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950174|gb|AEA23871.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 244 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197 R + + R +LR + ++ + D + LT RE + L + Sbjct: 136 RKGVETSEIVRSVRALLRGESVFDSRTTSVVVDVLRDEDGGARPRGQMLTERENQVLKLL 195 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G ++ EIAV L IS TV ++ ++ K + R+ + A R +V Sbjct: 196 AVGMSNREIAVRLLISEATVKFHVRNLREKLDVRRRTEIVYTATRQGMV 244 >gi|296131165|ref|YP_003638415.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022980|gb|ADG76216.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 254 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF L D L + G LL P L + + + Sbjct: 99 VFEALRAGARGLVLKDAPTSELVAAIHAAAAGDSLLSPSVTRRLIEEFARRPTVRMEATD 158 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 ELT RE + + +G ++ E A L + +TV +++ S+ RK + Sbjct: 159 ----------GPAELTARERDVFRLLVQGLSTAEAAERLTLGDSTVKSHVQSLYRKLGVR 208 Query: 232 TRSGAIAYAVRNNIV 246 R A+ YA + +V Sbjct: 209 DRVQAVIYAYEHGLV 223 >gi|32441931|gb|AAO38761.1| SwrR [Serratia liquefaciens] Length = 248 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%) Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219 + YQ + + + RE E + W S GK+ EIA+ILGI TV Sbjct: 153 MHGKMTTLYQEMSTPADFEKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKY 212 Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246 +I + ++K AI V ++ Sbjct: 213 HIGNAVKKLGVTNAKHAIRLGVELQLI 239 >gi|304405956|ref|ZP_07387614.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345199|gb|EFM11035.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DF 184 + + G+ ++ G +I + + +M KS K +F Sbjct: 100 AEGFLLKAIHPKNLIAGIRVVHTGGTLISPE------MADKMIKSMLKSGPELLEKNNEF 153 Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 L+ REVE L ++ G + +IA L +S TV NYI++I K K R A A Sbjct: 154 GLSAREVEVLHKLALGLRNQDIAKALYLSEGTVKNYISNIYSKMNVKGRREAAYKARETG 213 Query: 245 IV 246 I+ Sbjct: 214 IL 215 >gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 247 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 + + + + + + + G +L R+ L D H Sbjct: 107 ISAGASGFLLKDVEPEEL-LAAIRTVHSGEAVLSPRITAQVLQQLRSGQSASQPDSHATP 165 Query: 183 DF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +LT RE++ L ++ G ++ EI+ +S TV ++ I+ KT ++ R Sbjct: 166 VAAAATAPPAEDLTPRELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGSRDR 225 Query: 234 SGAIAYAVRNNIV 246 A+ YA+ + +V Sbjct: 226 VHAVLYALTHGVV 238 >gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37] gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37] Length = 218 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 18/159 (11%) Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPE----NITPPAGMDNRYCSLTFDVARIRIGLMLL 147 + + + E C V + G+D + + +R M+L Sbjct: 68 ARGMEVFGEARRWSPETRCAVITGMTSPQVLADWIAVGIDGLFLKSSPPEEMLRGLTMIL 127 Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207 +A ++ ++ D + LT RE + L I+EG ++ IA Sbjct: 128 AGDT------------YVARAVLDILEAADNDGRE--ALTMRERQVLYLIAEGCSNAAIA 173 Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L IS TV+N+ +M K + + +AYA+++ ++ Sbjct: 174 ERLSISVKTVDNHRTRLMAKLQVHSVAQLVAYALKSGLL 212 >gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 218 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 5/114 (4%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192 V G ML I + L LA A L+GREV+ Sbjct: 104 AVEAGASGYMLKDAPPEQIRQAVLSAAAGQTALAPEVAARLMGRI--RNPSPALSGREVQ 161 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++ G ++ +A L IS TV ++ I K R+ AIA A + I+ Sbjct: 162 LLELLATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQRRII 215 >gi|261867392|ref|YP_003255314.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412724|gb|ACX82095.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D11S-1] Length = 209 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIG----LLAA 167 G+D R LT A+ I ++ +L+D +L I +L+ Sbjct: 71 ALRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSD 130 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 N+ + LT RE+ L I+ G ++ +IA L IS TV +I +++RK Sbjct: 131 SIKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRK 190 Query: 228 TATKTRSGAIAYAVRNN 244 +R A + Sbjct: 191 LNVHSRVAATVLYFEHK 207 >gi|226361722|ref|YP_002779500.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240207|dbj|BAH50555.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 411 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%) Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 + + +L RE+E L ++ GK + IA LGIS +TV ++A +++K + Sbjct: 331 LPAARPDEQQFGDLNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVAS 390 Query: 233 RSGAIAYAVRNNI 245 R A A A+ I Sbjct: 391 RGEAGAIALEAGI 403 >gi|119898377|ref|YP_933590.1| putative transcriptional activator protein [Azoarcus sp. BH72] gi|119670790|emb|CAL94703.1| putative transcriptional activator protein [Azoarcus sp. BH72] Length = 251 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRN 215 L E+ + + A + H L+GRE++ L + +G T+ +I +L IS Sbjct: 153 LAELLMPHLHLALLRMREGEHAAAGASPALLSGRELQVLGCMRDGLTNQQIGEVLEISAL 212 Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV N++ I+RK R+ A+A V ++ Sbjct: 213 TVKNHVQRILRKLRAANRAQAVANGVAAGLI 243 >gi|86159176|ref|YP_465961.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775687|gb|ABC82524.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 215 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183 + Y F A + + + + R ++ LL ++ + D Sbjct: 95 RAGASGYILKPFHAADLTKAVEDVLSGEAAPISPRAAKV-LLQEFRGD---PPDQRAKDG 150 Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 L+ RE+E L + G T ++A LGI+ TV Y+ I K T++ A AV Sbjct: 151 PALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVAR 210 Query: 244 NIV 246 +V Sbjct: 211 GLV 213 >gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 221 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFK 174 + + N Y + A + GL + + RL + + ++A ++ Sbjct: 85 RDLLQALQAGANGYLVKDAEPAELIQGLEKVLAGQTAV-ASRLTDTLVQMMAGGRSQREG 143 Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + F LT RE E L ++ +++ IA LG+S TV +I SI+RK K+R Sbjct: 144 AEASRPPDPFAALTPREREILMHVARAESNKVIARELGVSDGTVKLHIKSILRKLGVKSR 203 Query: 234 SGAIAYAVRNNI 245 A AV + Sbjct: 204 VEAAVKAVDLGL 215 >gi|330820816|ref|YP_004349678.1| putative metal dependent phosphohydrolase [Burkholderia gladioli BSR3] gi|327372811|gb|AEA64166.1| putative metal dependent phosphohydrolase [Burkholderia gladioli BSR3] Length = 481 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+E L IS G ++ E A +L +S +TV ++ SI RK TR+ A A+ + Sbjct: 421 LSPREIEVLRQISGGLSNKEAARVLALSPSTVRTHVESIFRKLDCSTRAAATLKALTTGL 480 Query: 246 V 246 + Sbjct: 481 L 481 >gi|288916739|ref|ZP_06411113.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351813|gb|EFC86016.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 225 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 33/222 (14%) Query: 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98 + ++ +R+++ + V + L + +E + D I+ + + E D Sbjct: 14 VRGGLAMVLRIHSDIDVVAEAGNGLEAMEAAREHRPDVILM---------DIRMPEMDGL 64 Query: 99 YNVLQRPTE-----------LFCP---VFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + E F P V+ L + D L V + G Sbjct: 65 EATSRILAEADWGVRVLILTTFDPDEYVYEALRAGASAFVLKDIPADQLAVAVRTVADGG 124 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 L+ P L R E +++ A + LT RE + + ++ G ++ Sbjct: 125 ALIAPSITRRLIGRFTERRPVSSTVARRVER----------LTDRERDVVVAVARGSSNS 174 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L I TV ++++SI+ K + R+ + +A + +V Sbjct: 175 EIAKELFIGPATVKSHVSSILTKLGLRDRAQVVVFAYESGLV 216 >gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 F L + L G L+P L+ Y Sbjct: 97 FEALKAGASGYVLKTAADRDLVEAARAAMRGESFLYPAAI---------TALVRDYLERA 147 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 DV + LT RE E L I+E T+D+IA+ L I+R TV + A+I+ K + Sbjct: 148 SAGEDV---PEDPLTPREREVLKLIAEAHTNDQIALELQIARRTVERHRANILAKLHMRD 204 Query: 233 RSGAIAYAVRNNIV 246 R YA+R +V Sbjct: 205 RVELTRYAIRRGLV 218 >gi|227894641|ref|ZP_04012446.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227863536|gb|EEJ70957.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 223 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 71/175 (40%), Gaps = 6/175 (3%) Query: 78 VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 + + P ++ + + D ++ ++ ++ + T ++ + + + Y Sbjct: 43 IKKNKPDIVLMDIRMPVMDGTVCTKHIKEKYPDIKVIILTTFDDDDFIFSALKYGASGYL 102 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 + + + G +I + ++ L + A + V+ + L+ E Sbjct: 103 LKGASPQELYKAIDTVNAGGAMINPNIAGKVFKLFSKMAQSNYAISVNTNEVKNLSKSEW 162 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + + + G+T+ EIA L +S TV NYI+ I+ + R+ +AV+ ++ Sbjct: 163 QVIQQVGLGRTNKEIAQKLFLSEGTVRNYISKILSCLQLRDRTQLAIWAVQKGVI 217 >gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] Length = 215 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 +V K +ELT RE+E + ++ G TS EIA L I RNTV Y I K K+ Sbjct: 143 EENVKKRKPYELTDRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAI 202 Query: 235 GAIAYAVRNNIV 246 + +A +N ++ Sbjct: 203 EIVVFAYKNKLI 214 >gi|256789068|ref|ZP_05527499.1| multidomain-containing protein family [Streptomyces lividans TK24] Length = 772 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190 +L + R + F + + L ++ A+ + H G LT RE Sbjct: 657 TLMLGLGAERFTQVYTFGTRLPVPQ--LIDVACGNAHADDAAPPRHPHDGSPLGPLTPRE 714 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 E I EG T+ +IA L IS+ T + ++ I+ K +R+ A Sbjct: 715 REVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 762 >gi|223934338|ref|ZP_03626259.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896801|gb|EEF63241.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 236 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V L + G P LRD+ E Sbjct: 102 VQQLTEAGAAGYLVKQTAANDLLKAIREAYKGNAFFSPSIAKRLRDQCREA--------- 152 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F S ++ LT RE E L I+EG+ + +IA L IS TV + +M K Sbjct: 153 -FVSGQPVRKRNDYLTTREAEVLQLIAEGQANKQIAAELCISIKTVEKHRQQVMNKLNIH 211 Query: 232 TRSGAIAYAVRNNIV 246 +G +A+ I+ Sbjct: 212 DVAGLTRHAISKGII 226 >gi|148272754|ref|YP_001222315.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830684|emb|CAN01624.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 228 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 4/162 (2%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 D ++ A + + P L F + + D + Sbjct: 64 MDGIQATAEVLRAADARGERPPRVLVLTTFDLDESAARAIRAGASGFVLKDADPEFLLAA 123 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I ++ + V LT RE E + G ++ Sbjct: 124 IRTVHAGNSVIAASATRQL----LEHFDPGSRPRVAPPAFMSLTSREREIFVLAARGLSN 179 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA +S TV +++ I+ K + + R + +A + + Sbjct: 180 AEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221 >gi|294013470|ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676800|dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 250 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 9/118 (7%) Query: 130 YCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 Y R+ L L+ R++ L D L L + + D L Sbjct: 105 YIVKEISCDRLVATLRLVAMGERVLPPQLADELQSRPSLT-DALEVERPVDAAC-----L 158 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 + RE+E L W+ G + I+ + IS TV ++ +++RK K R+ A +A + Sbjct: 159 SDRELEILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNRTQAAIWAANHG 216 >gi|256787861|ref|ZP_05526292.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771746|ref|ZP_06531124.1| two-component system response regulator [Streptomyces lividans TK24] gi|289701945|gb|EFD69374.1| two-component system response regulator [Streptomyces lividans TK24] Length = 231 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 157 DRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 D L G A +S L+ RE + LT ++ G + EIA LG+S Sbjct: 125 DALLSPGPTARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLS 184 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T +++ IM K + R+ + A + +V Sbjct: 185 PLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 217 >gi|290957842|ref|YP_003489024.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647368|emb|CBG70473.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 237 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 3/113 (2%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186 + D+ R + + + E ++ K +D + F L Sbjct: 117 AAELIAAVRDMREGRATISATVSSSLGVSYEPSHESHDHSSQLQPFVKQFD---RRSFGL 173 Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + REVE + I+ G + +IA IS TV N+I I K + TRS AIA+ Sbjct: 174 SSREVEVMDLIASGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIAH 226 >gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 194 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 21/212 (9%) Query: 35 RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94 R++ D + M + A E G + V + Q+ + P ++ + + + Sbjct: 2 RLLIADDHPLFRMGLRAALEREGFA----VVAEAGDGQEAVKLGLELLPDGVLLDVRMPQ 57 Query: 95 KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154 D + + + L P Y Sbjct: 58 MDGITATRMLREQRYNGLIALLTTFNEPVLVQQAAYAGAD---------AYWSKELPPEA 108 Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214 L +RL +GL ++ ++ LT RE E L W+++G ++ EIA + IS Sbjct: 109 LAERLRRLGL---GLEPRLRAPELPR-----LTAREQEVLQWMAQGLSTKEIARQMHISP 160 Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 TV +++ + K + R A+ A ++ Sbjct: 161 ETVKDHLLRLYEKLEARNRVEALERARSLGLL 192 >gi|251798920|ref|YP_003013651.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546546|gb|ACT03565.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 225 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 11/205 (5%) Query: 42 TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101 +S+ + M E VG +H + E + D IV D ++ + S + Sbjct: 17 GISFFLAMQPDFELVGEAHNGKEAVEKAGELQPD-IVLMDLNMPIMDGIEAS-----ALI 70 Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIGLMLLFPKGRII-LRDRL 159 ++ + V + + + DV ++ + I L + Sbjct: 71 KEQHPHIKVLVLTSFADQSHIVPALQTGAIGYMLKDVEPDQLAEAIRSAYKGNIQLHPDI 130 Query: 160 WEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNT 216 L + H +D LT RE+E L +++G ++ +IA L ++ T Sbjct: 131 SRALLSRPEPEPRPEPVIQHSNRDKSLEALTPRELEVLELLTKGLSNKDIAQTLIVAEKT 190 Query: 217 VNNYIASIMRKTATKTRSGAIAYAV 241 V +++SI+ K R+ A +A Sbjct: 191 VKTHVSSILSKLDLSDRTQAALFAA 215 >gi|260596309|ref|YP_003208880.1| putative HTH-type transcriptional regulator yhjB [Cronobacter turicensis z3032] gi|260215486|emb|CBA27616.1| Putative HTH-type transcriptional regulator yhjB [Cronobacter turicensis z3032] Length = 218 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 + + P I+ R +G+L + D G L+ R+ E L + Sbjct: 113 HHVAAFVRRDSPPEAIVQTLRAAAMGMLC-FPQESISLLDSGPGTLARLSERQREILKLL 171 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 + G+++ +I+ L IS TV ++ SI R+ R+ A Sbjct: 172 AAGESNKQISRHLNISAGTVKAHLESIFRRLNVTNRTQAA 211 >gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13] gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13] gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] Length = 193 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 39/72 (54%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + + +L+ REV+ L I +G T+ EIA L IS NTV + +I K KT S Sbjct: 115 SGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVS 174 Query: 235 GAIAYAVRNNIV 246 G YA+ N I+ Sbjct: 175 GLTFYAIMNGII 186 >gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 214 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 6/141 (4%) Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI---GLMLLFPKGRIILRDRLWEIGLL 165 V + +D + ++R++ + + G I + E+ LL Sbjct: 75 HVLVLTGSMNKLDLARAIDAGADGVMLKLSRVQDIIQAIRCISAGGSIHSPQEIAELLLL 134 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 A K +LT RE E L I+EG + EIA I+ +T + + +I+ Sbjct: 135 A---GRARIEDANARDKIGQLTDREREILQAIAEGLSDKEIAARFNITVDTAHKHANNIL 191 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 RK T +R A+ +A+R+ + Sbjct: 192 RKLDTNSRLQAVLFALRHGAI 212 >gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] Length = 193 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 39/72 (54%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + + +L+ REV+ L I +G T+ EIA L IS NTV + +I K KT S Sbjct: 115 SGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVS 174 Query: 235 GAIAYAVRNNIV 246 G YA+ N I+ Sbjct: 175 GLTFYAIMNGII 186 >gi|21902157|gb|AAM78432.1|AF425991_3 putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 217 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 157 DRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213 D L G A +S L+ RE + LT ++ G + EIA LG+S Sbjct: 121 DALLSPGPTARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLS 180 Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 T +++ IM K + R+ + A + +V Sbjct: 181 PLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 213 >gi|298251437|ref|ZP_06975240.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546029|gb|EFH79897.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1003 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 +S F LT RE E L ++ G IA L +SR TVN ++ SI K TR Sbjct: 931 QSITPSSANAFHLTARECEVLRLLALGHPDARIAQELVLSRRTVNTHLRSIYAKLGVSTR 990 Query: 234 SGAIAYAVRNNI 245 + A A + Sbjct: 991 TAAARVAFEQQL 1002 >gi|239831204|ref|ZP_04679533.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823471|gb|EEQ95039.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 213 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 37/69 (53%) Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 D K L+ RE + L ++EG ++ EIA+ LGIS TV + +I +K + +G Sbjct: 140 DSGERKSEGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGL 199 Query: 237 IAYAVRNNI 245 YA+ N + Sbjct: 200 TRYAIENRL 208 >gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 242 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 77/188 (40%), Gaps = 29/188 (15%) Query: 83 PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITPP------AGMDNRYCS 132 P ++ + + + Y +L++ E PV + +T AG+D+ Y + Sbjct: 59 PDLIISDIMMPRSNGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDD-YIA 116 Query: 133 LTFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDV 178 FD + + + + +L++ ++ EI + Q + + + Sbjct: 117 KPFDPDELSARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPLNQENSI 176 Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 T RE L ++EG + EIA L S V Y++ + KT+T +R+ + Sbjct: 177 DIP---NFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTSTSSRTELVR 233 Query: 239 YAVRNNIV 246 YA+ N++V Sbjct: 234 YALENHLV 241 >gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 514 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 P + + C L D++ + M L ++D W L AN+ + Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRENAPD 423 Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483 Query: 239 YAVRNNIV 246 +A IV Sbjct: 484 WARERGIV 491 >gi|120609353|ref|YP_969031.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587817|gb|ABM31257.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 256 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G L+ RE + L I+ G ++ EIA L I+ TV ++ I+RK +R A Sbjct: 189 AAGSASPLSAREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAV 248 Query: 239 YA 240 YA Sbjct: 249 YA 250 >gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC 14579] gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 159 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 35/67 (52%) Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 W + L+ RE E L EGKT++EIA L +S TV NYI+ ++ K K R AI Sbjct: 93 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 152 Query: 240 AVRNNIV 246 A + Sbjct: 153 AEEKGWI 159 >gi|86134557|ref|ZP_01053139.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] gi|85821420|gb|EAQ42567.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] Length = 217 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182 N Y D + ++ + G + + L + + + Sbjct: 96 IKAGANGYLLKEIDAENLYKSIIEVTEGGAPMSPS--IALKTLNLLRNPTIATEKIEESD 153 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +LT RE E L +S+G + I+ L IS +TV +I +I +K ++ A+ A + Sbjct: 154 TIKLTKRETEILIQLSKGLNYNSISDNLIISPSTVRKHIENIYKKLQVHSKMEAVMKAQK 213 Query: 243 NNIV 246 N++ Sbjct: 214 RNLI 217 >gi|332978107|gb|EGK14844.1| nitrate/nitrite response regulator protein NarL [Psychrobacter sp. 1501(2011)] Length = 219 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 11/158 (6%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 LS D + + + +F + N Y ++ + Sbjct: 65 QNMPGLSGLDTVKQIRDQGNQAKILMFTVSDSGDDIHNALKLGVNGYLLKDMQPEQVALD 124 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + R LR L LAA A ++ ++ LT RE++ + I++G+++ Sbjct: 125 I-------RKALRGELVVSSRLAAVLAQALRTPNLD-DIVSNLTSRELQVVKMIAKGQSN 176 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 I LGIS +TV ++ I+ KT +TR +AV Sbjct: 177 KMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214 >gi|303239313|ref|ZP_07325841.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593099|gb|EFL62819.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 +AA N + ELT RE E ++E ++ EIA L I+ TV N+I +I Sbjct: 130 IAAKLVNRLSESQDSANQLEELTSREHEIAKLVAEALSNKEIAAKLFITEGTVKNHITNI 189 Query: 225 MRKTATKTRSGAIAYAVRNNI 245 + K R+ Y + NN+ Sbjct: 190 LSKLDLNHRTKIALYVIENNL 210 >gi|312199753|ref|YP_004019814.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231089|gb|ADP83944.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 246 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 3/177 (1%) Query: 73 KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNR 129 +L + D F VR + + ++ + T + AG+ + Sbjct: 58 RLARQLRPDVVFMDVRMPGMDGIEATAAIVAARLPTRVLILTTFDLDQYVYAGLRAGASG 117 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + A + + +I + + D LT R Sbjct: 118 FLLKDARPAELAAAAHAVAAGEAVIAPSATRRLLETFTPLLPTPEQADARAATLAALTDR 177 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + L +++ +T+ EIA L +S TV ++ I+ K + R +A+A ++ Sbjct: 178 EHDVLLLVAQARTNREIADELHVSEATVKVHVGRILAKLGLRDRVQTVAFAYETGLI 234 >gi|145595794|ref|YP_001160091.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305131|gb|ABP55713.1| response regulator receiver [Salinispora tropica CNB-440] Length = 221 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202 + P ++ R A A++ ++ +L+ RE + L +++G + Sbjct: 110 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 169 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S +T +I+ + K R+ A+ A+R ++ Sbjct: 170 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|56418740|ref|YP_146058.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56378582|dbj|BAD74490.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 221 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 7/155 (4%) Query: 87 VRCMALSEKDKYYNVLQRPT--ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 VR ++ + + ++ L F + Y D RIR + Sbjct: 65 VRMPNMNGVEATKLLCEQTKTKPLILTTFDDDEYILDAIQYGAKGYFLKNTDPERIREAI 124 Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204 ++ ++ + +I + D T RE++ + I++G ++ Sbjct: 125 KAVYHGQVVMQEIVMDKIKSNLKEETEAAPKIDKSL-----FTERELDIMALIAKGLSNK 179 Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 EIA L +S TV NYI SI+ KT + R+ Y Sbjct: 180 EIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214 >gi|21224676|ref|NP_630455.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3367769|emb|CAA20094.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 3/162 (1%) Query: 87 VRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR + + ++ R L F + + + G Sbjct: 55 VRMPGMDGIEATRRIVAAGGRSRVLVLTTFDLDEYVHAAIRAGASGFLLKDARPDELLAG 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + +I + A + + LT RE E L + +G T+ Sbjct: 115 IRAVASGDAVIAPALTRRLLDEFAQYVPAHRGDAAGDPRLVSLTDREREILVAVGKGWTN 174 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 EIA +S +TV ++ ++ K + R A+ +A + + Sbjct: 175 GEIAARFVLSESTVKTHVGRVLAKIGARDRIQAVIFAYDHGL 216 >gi|21223147|ref|NP_628926.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|29831541|ref|NP_826175.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|182436552|ref|YP_001824271.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239929430|ref|ZP_04686383.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|239979981|ref|ZP_04702505.1| putative two-component system response regulator [Streptomyces albus J1074] gi|239990114|ref|ZP_04710778.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|254383110|ref|ZP_04998464.1| two-component system response regulator [Streptomyces sp. Mg1] gi|254392007|ref|ZP_05007198.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|256785756|ref|ZP_05524187.1| putative two-component system response regulator [Streptomyces lividans TK24] gi|282860879|ref|ZP_06269945.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289769648|ref|ZP_06529026.1| two-component system response regulator [Streptomyces lividans TK24] gi|290958081|ref|YP_003489263.1| luxR family regulator [Streptomyces scabiei 87.22] gi|291437756|ref|ZP_06577146.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291447128|ref|ZP_06586518.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291451838|ref|ZP_06591228.1| whiK [Streptomyces albus J1074] gi|294630967|ref|ZP_06709527.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294814529|ref|ZP_06773172.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|295838473|ref|ZP_06825406.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|297192634|ref|ZP_06910032.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297201810|ref|ZP_06919207.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|302519583|ref|ZP_07271925.1| whiK [Streptomyces sp. SPB78] gi|302536316|ref|ZP_07288658.1| whiK [Streptomyces sp. C] gi|302543269|ref|ZP_07295611.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302553613|ref|ZP_07305955.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302558923|ref|ZP_07311265.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|307331078|ref|ZP_07610207.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|318058051|ref|ZP_07976774.1| luxR family regulator [Streptomyces sp. SA3_actG] gi|318080229|ref|ZP_07987561.1| luxR family regulator [Streptomyces sp. SA3_actF] gi|326442919|ref|ZP_08217653.1| luxR family regulator [Streptomyces clavuligerus ATCC 27064] gi|326777175|ref|ZP_08236440.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|329938172|ref|ZP_08287623.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|333026588|ref|ZP_08454652.1| putative two-component regulator [Streptomyces sp. Tu6071] gi|3449280|emb|CAA20424.1| putative two-component regulator [Streptomyces coelicolor A3(2)] gi|3618247|emb|CAA09263.1| whiK [Streptomyces coelicolor A3(2)] gi|29608657|dbj|BAC72710.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|178465068|dbj|BAG19588.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|194342009|gb|EDX22975.1| two-component system response regulator [Streptomyces sp. Mg1] gi|197695725|gb|EDY42658.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|197705685|gb|EDY51497.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197717529|gb|EDY61563.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197722965|gb|EDY66873.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|260647607|emb|CBG70712.1| putative luxR family regulator [Streptomyces scabiei 87.22] gi|282564615|gb|EFB70151.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289699847|gb|EFD67276.1| two-component system response regulator [Streptomyces lividans TK24] gi|291340651|gb|EFE67607.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291350075|gb|EFE76979.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291354787|gb|EFE81689.1| whiK [Streptomyces albus J1074] gi|292834300|gb|EFF92649.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294327128|gb|EFG08771.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|297159676|gb|ADI09388.1| putative luxR family regulator [Streptomyces bingchenggensis BCW-1] gi|302428478|gb|EFL00294.1| whiK [Streptomyces sp. SPB78] gi|302445211|gb|EFL17027.1| whiK [Streptomyces sp. C] gi|302460887|gb|EFL23980.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] gi|302471231|gb|EFL34324.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302476541|gb|EFL39634.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|306883289|gb|EFN14346.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|320009036|gb|ADW03886.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] gi|326657508|gb|EGE42354.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|328884500|emb|CCA57739.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] gi|329302661|gb|EGG46551.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|332746440|gb|EGJ76881.1| putative two-component regulator [Streptomyces sp. Tu6071] Length = 203 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 + G LT RE++ L +S G+++ EI L +S +TV + + +K R Sbjct: 130 RLRSAEMGAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDR 189 Query: 234 SGAIAYAVRNNIV 246 + A+A R +V Sbjct: 190 AHAVALGFRWGLV 202 >gi|15966696|ref|NP_387049.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075968|emb|CAC47522.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 237 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 20/229 (8%) Query: 26 LPTRSDLLARMIPLDCTVSWTMR-MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84 + R+DL A + + R + L++ A L L + ++++P Sbjct: 1 MLARTDLFAECLTQAIGARFQDREVVRLSD---ADSLLDGNLVDVTLVMLYRVPTANFPS 57 Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144 + K ++ L V H + E + L + + Sbjct: 58 IIRMIHEFHPKAAIGLLVDNAEGLDASVSHLVEEGMIH------GVLPLNLHLDVCLTAI 111 Query: 145 MLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFE---LTGREVECL 194 LL G L + LA ++ D K F LT RE++ L Sbjct: 112 DLLMKGGEHFPAALLRRLAPKNPGERDLATRNETASENVDPERRKGFGQVVLTTREIQIL 171 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 I G + IA LG+S NTV ++ +I +K + R+ A + RN Sbjct: 172 DLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRN 220 >gi|88703812|ref|ZP_01101527.1| transcriptional regulator malT [Congregibacter litoralis KT71] gi|88701639|gb|EAQ98743.1| transcriptional regulator malT [Congregibacter litoralis KT71] Length = 888 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 53/114 (46%) Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192 + F+ ++ + ++ L +A+M + + + L+ RE+E Sbjct: 775 VLFEERQLLLPILQYILGPDSSAAMAPARASFLRKLRADMQVTAQLIEQEQCVLSIREIE 834 Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L + G+++ EIA +S NTV ++ +I K +R A+A+A+R+ ++ Sbjct: 835 ILRCLMMGESNREIAAGKALSINTVKFHLKNIFSKLGASSRDEAVAFAIRDQLL 888 >gi|327330300|gb|EGE72049.1| nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL097PA1] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 G LA A + LT RE++ L ++G ++ +IA L +S TV +++ Sbjct: 128 GALAPAVATRLMAR--MRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 I K +RS A+A A + Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGFI 209 >gi|313837284|gb|EFS74998.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928042|gb|EFS91873.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314972055|gb|EFT16153.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907167|gb|EGG26933.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 217 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 10/163 (6%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIG 143 V+ + + + + +++ + T + +D + + G Sbjct: 54 VQMPVMDGIEATTRIRE-FSDVKIVILTTFDRDDYLFDALDAGASGFMLKNAEADLLVTG 112 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 L + ++ + + A A+ D LT RE+E ++ G ++ Sbjct: 113 LRQVAEGHALLAPEVTRRVI---ARSASRLAKLDRRVE---NLTSREIEVTRLVARGLSN 166 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L +S TV +++S + K + R + A + ++ Sbjct: 167 AEIAAELTVSEATVKTHVSSCLTKCDLRDRVQLVVLAYESGLI 209 >gi|297155229|gb|ADI04941.1| two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 181 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 7/142 (4%) Query: 112 VFHTLPENITPPAGMDNRYCSLT---FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168 V T ++ T P + L F + + + D + GL Sbjct: 37 VSGTTTDDFTLPGTQSQKAIDLLEKEFPKGSADGAAARVVGIRAVAVGDSVISPGLTRKL 96 Query: 169 QANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 KS H + LT RE E LT ++ G T+ EIA L ++ +TV ++++ I Sbjct: 97 IDAFTKSRPGHTPEQDRQLARLTEREREVLTGVATGWTNTEIAERLCLAESTVKSHVSRI 156 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 + K + R + +A +V Sbjct: 157 LTKIGARDRVQVVIFAYDVGLV 178 >gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 L+A Y A S LT RE E ++ G ++DEIAV + IS T +++ Sbjct: 135 LIAEYVARRPASAPEGLDV---LTNREREVTALVARGLSNDEIAVHMVISPTTAKTHVSR 191 Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246 M K + R+ + +A + +V Sbjct: 192 AMTKLRARDRAQLVVFAYESGLV 214 >gi|228919418|ref|ZP_04082785.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840249|gb|EEM85523.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 217 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 9/177 (5%) Query: 72 QKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128 ++L ++S + ++ + + D V ++ E+ + T ++ G+ N Sbjct: 36 EELLELLSHTYAEIILMDIRMPIMDGIVATKLVKEKYPEIKVIILTTFNDSEYIFTGLKN 95 Query: 129 R---YCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLL--AAYQANMFKSYDVHWGK 182 Y D I + F ++ L + L A Y+ + ++ + Sbjct: 96 GADGYILKDSDSQEIIESIKTAFEGNILLNPKITLKVVKALNSANYKETVKAEFNENKQP 155 Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE+E I EGK++ I+ L I+ TV NY++ I+ K R+ Y Sbjct: 156 SNLLTPRELEVAKHIMEGKSNKAISKELFITEGTVKNYVSRILEKLELNNRTELTLY 212 >gi|124009769|ref|ZP_01694439.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] gi|123984274|gb|EAY24623.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] Length = 218 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 8/175 (4%) Query: 78 VSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYC 131 V + P ++ + + + + + E+ V E I N Y Sbjct: 44 VDAQPPDVILMDLKMPVMDGMEATKIIKAKYPEVKVLVLSMYDEEKFIIHCLELGANGYL 103 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 D + + + K +L + ELT RE Sbjct: 104 LKNTDPDELVHAIGTVMAKDFYFNN--HISTVMLKGLNQKKRAKGKPQFENSIELTKREQ 161 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E L I + T+ E+A L IS TV + +++ KT K +G + +A++N +V Sbjct: 162 EVLELICKELTTPEMAEKLFISNRTVEGHRKNLLEKTGAKNTAGLVVFALKNELV 216 >gi|332991726|gb|AEF01781.1| two component LuxR family transcriptional regulator [Alteromonas sp. SN2] Length = 219 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 11/173 (6%) Query: 76 SIVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDN 128 ++ +D FDLV + + E +L+ R PV E + + Sbjct: 41 EVLEADAAFDLVMLDLNMPETCGLNGLLEIRNQHPNLPVVIISAETEKHNILQTISYGAV 100 Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 + S + + I + +F + + L ++ + + K + + LT Sbjct: 101 GFISKSSKIEEIATSVESIFEGNVCLPSEILR----TSSTRNRVKKEDAISLDQIRSLTR 156 Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 +E+ L ++++G + IA L IS TV ++++SI++K R +A A Sbjct: 157 KELAVLKYLTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVASAA 209 >gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali symbiont] Length = 198 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 3/105 (2%) Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVEC 193 + G L + ++L + + A + +LT RE++ Sbjct: 86 MDAGADGYQLKDSEPELLLAQVMRGAQGENVFREVVAEYLATRQPSANPFRQLTERELDV 145 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 L ++ G ++ EIA L IS TV +I +++RK ++R A Sbjct: 146 LQEVARGLSNKEIAATLHISEETVKVHIRNLLRKLDVRSRVAATV 190 >gi|238060304|ref|ZP_04605013.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|330469356|ref|YP_004407099.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|237882115|gb|EEP70943.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|328812327|gb|AEB46499.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 222 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202 + P ++ R A A++ ++ +L+ RE + L +++G + Sbjct: 111 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 170 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S +T +I+ + K R+ A+ A+R ++ Sbjct: 171 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 45/82 (54%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + ++ +S D + LT RE E LT+I+ G ++ +IA+ LG+S T++N+ S+ Sbjct: 113 ITEVLRSVVRSIDRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSM 172 Query: 225 MRKTATKTRSGAIAYAVRNNIV 246 MRK + YAV + IV Sbjct: 173 MRKLDLHNVADITRYAVEHRIV 194 >gi|111025634|ref|YP_708054.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110824613|gb|ABG99896.1| protein kinase/ transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 1084 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 40/101 (39%) Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 R IG R R A ++ + S + LT RE + I+ Sbjct: 977 RRLIGAKAFETAHRKGQRLSFDAAIAYALHEQPLNASDAPVVDRSVRLTKRERQVADLIA 1036 Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 EG T+ IA L IS TV +++ I+ K +R+ A+ Sbjct: 1037 EGLTNQAIADRLVISPRTVQSHVEHILAKLGFTSRTQIAAW 1077 >gi|315634983|ref|ZP_07890264.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter segnis ATCC 33393] gi|315476245|gb|EFU66996.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter segnis ATCC 33393] Length = 209 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 LT RE++ L ++ G ++ +IA L IS TV +I +++RK +R A + Sbjct: 149 LTDREIDVLRLVATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEHK 207 >gi|284041874|ref|YP_003392214.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946095|gb|ADB48839.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 981 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 + + +T RE E LT ++EG+T+ +IA L I+ T + +++ I+ K + R Sbjct: 910 APPPDRIAELGITAREREVLTLLAEGRTNRQIAETLVIAEKTASVHVSRILAKLDARNRG 969 Query: 235 GAIAYAVRNNI 245 A A A R + Sbjct: 970 EAAAIARRLGL 980 >gi|224026499|ref|ZP_03644865.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM 18228] gi|224019735|gb|EEF77733.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM 18228] Length = 194 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 154 ILRDRLWE-IGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211 + +D+L + I L Y +M + EL+ RE+E L I++G + EIA L Sbjct: 95 LPQDQLVQAIMQLRKYGHSMHPHPSTQQQDTEHELSPREIEVLVLITKGLINKEIADKLN 154 Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IS TV ++ +I K K+ SG YAV + Sbjct: 155 ISLTTVISHRKNITEKLGIKSVSGLAIYAVMRGYI 189 >gi|254381656|ref|ZP_04997020.1| two component system response regulator [Streptomyces sp. Mg1] gi|194340565|gb|EDX21531.1| two component system response regulator [Streptomyces sp. Mg1] Length = 221 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 10/169 (5%) Query: 83 PFDLV-RCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFD 136 P D+V + + D + E + E+I G R Sbjct: 56 PVDVVLMDLRMPVMDGTETTRRLAEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNA 115 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + G+ +L DR + LL ++ +LT RE E L Sbjct: 116 GRQDIARAIRAAAAGQSVL-DREVQDRLLVTV---RTRAPAPARPLPEDLTPREREVLAL 171 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 I +G + IA L +S TV +I ++ K + R+ A+ A+ + Sbjct: 172 IGQGLPNRAIAQRLFVSEATVKTHINNLFAKAGIRDRADAVRRAIAAGL 220 >gi|28869442|ref|NP_792061.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852683|gb|AAO55756.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 87 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 38/65 (58%) Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 D +LT +E + L W++ GK++ EI+ I G S TV+ + ++I RK + A+ A+ Sbjct: 20 PDVQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAI 79 Query: 242 RNNIV 246 R ++ Sbjct: 80 RQGVI 84 >gi|325677216|ref|ZP_08156882.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325551913|gb|EGD21609.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 283 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISEGKTSDEIAVIL 210 + DRL + L A +A K + G + L+ RE E L ++ G + EIA L Sbjct: 187 IADRLDDASLTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERL 246 Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 G+ +T+ +Y+ +IM K +R A+ A R ++ Sbjct: 247 GLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282 >gi|289641790|ref|ZP_06473948.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508434|gb|EFD29375.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 377 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + ++ I L R L A A + + K LTGRE+E LT Sbjct: 265 SAMQTVESVLDDLAGAEIDLASREHATALAATRPARLLHT--TRSSKMESLTGRELEVLT 322 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ G T++ IA L I+ TV +++ I+RK + R+ AI+ +R I Sbjct: 323 LMATGATNNRIAEKLVITNGTVKSHVKRILRKLGAENRAEAISQYLRLTI 372 >gi|269139570|ref|YP_003296271.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202] gi|267985231|gb|ACY85060.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202] gi|304559458|gb|ADM42122.1| Transcriptional regulator CsgD [Edwardsiella tarda FL6-60] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 LL A Q + + + LT RE+E L + +G ++ +I+ IL IS NTV +I + Sbjct: 129 LLVAAQEDE-PGEAIPVPRLTRLTLRELEVLKAMQQGASNLDISRILYISENTVRTHIYN 187 Query: 224 IMRKTATKTRSGAIAYA 240 I +K A K R A+ +A Sbjct: 188 IFKKIAVKNRIQAVKWA 204 >gi|238062942|ref|ZP_04607651.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884753|gb|EEP73581.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 217 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 5/163 (3%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143 VR L +L+ + + T ++ +D + + D + G Sbjct: 55 VRMPRLDGLAAAAELLRVLPGIGVAMLTTFGDDEYVARALDSGARGFLLKSGDPRELLTG 114 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + G + D ++ +A K +LT RE + L + G ++ Sbjct: 115 IHAIADGGAYLSPD--ITAQVIGRLRATGLGRAAEARAKVQQLTDRERDVLALVGAGLSN 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +IA L + TV ++++I+ + R A A +V Sbjct: 173 AQIARRLHLVEGTVKGHVSTILARLGLANRVQAAVLAHEAGLV 215 >gi|146277715|ref|YP_001167874.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555956|gb|ABP70569.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 19/220 (8%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMA 91 + + + + M + + ++ AS + VR ++ L+ I PFD+ + + Sbjct: 4 MPQKLSVLIADDHEMVVEMFSLFLAASSEMTVRTAKSLDEALERI-KEHGPFDVTLLDLN 62 Query: 92 LSEKDKYYNVLQRPT-ELFCPVFHTL----PENITPPAGMDNRYCSLTFDVARIRIGLML 146 + + + + PV P + L R + Sbjct: 63 MPGMNGVAGLTRAIKLSAGKPVAILTSNPTPRMVDEILAAGASGIVLKTTPVRSLGNAIR 122 Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206 G L L + ++ D G+ LT +E+ +++++EG+ + EI Sbjct: 123 FMHAGEHYLPLELAR---------DRRQAPDSSGGR---LTEKEMLVMSYLAEGRQNKEI 170 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 A L ++ T+ ++ SI +K R+ A+ A I+ Sbjct: 171 AHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210 >gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator [Pseudomonas fluorescens] Length = 242 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 18/199 (9%) Query: 50 YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109 L Y A++ L+ + + + S PF + + ++ + +R ++ Sbjct: 60 RWLKAYKNANYHLI-------DPIIHHGLKSCAPFSWSDALQAAPCERSRELFRRSSQYR 112 Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAA 167 T + SL+ + + + L+ L LL+ Sbjct: 113 ICTGATFT-----LHDAGGMFSSLSLCNSGPQAEFERRMADQQGHLQMALIRFHGRLLSL 167 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 + L+ RE+ L W+ GK EIAVI IS TV ++++I K Sbjct: 168 RAMDELFPEPQTG----PLSARELGVLKWVMMGKAYREIAVICAISERTVKFHMSNISGK 223 Query: 228 TATKTRSGAIAYAVRNNIV 246 A+ A R I+ Sbjct: 224 LQVCNAKQAVYEAQRQGIL 242 >gi|24374816|ref|NP_718859.1| LuxR family DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24349500|gb|AAN56303.1|AE015768_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis MR-1] Length = 206 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 LT + L I+ G ++ IA L IS TV +I++I K K R+ A Sbjct: 149 LTPSQFRVLHLIAAGHSNKTIADSLNISEKTVKAHISAIFEKLDVKNRTQAA 200 >gi|319795110|ref|YP_004156750.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597573|gb|ADU38639.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 155 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 11/127 (8%) Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-----AYQANMFKSYDVH 179 ++ +L F + R P I R L I A + A ++ Sbjct: 27 AREDELAALMFSMERS------HSPGASRIARHMLALIAAAAKSRPPSAIATKPRTGAAP 80 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 + L+ RE++ L +S+G ++ IA L S NT++ I SI RK +R+ A+ Sbjct: 81 PAANVSLSPRELQVLQLVSQGLSNRRIAEALSRSANTIDTQIKSIYRKLDVNSRTRAVRA 140 Query: 240 AVRNNIV 246 A+ ++ Sbjct: 141 AMEQGLL 147 >gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana) tropicalis] Length = 241 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE + L +++G ++ EIA L +SR TV +++ + RK A +R A+ A + Sbjct: 180 LSVREGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREARSRGL 239 Query: 246 V 246 + Sbjct: 240 L 240 >gi|297162688|gb|ADI12400.1| two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 4/171 (2%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 +V D + +A + + L + F + + Sbjct: 52 DVVLMDIRMPQLDGLAATRRITEDPALAEVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 111 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195 + + + + ++ L+A + A + ELT RE E + Sbjct: 112 EPEELLRAVRAVVAGDALLSPGVTRR--LIAEFAARSKEPAPAAVLA--ELTEREREVMA 167 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + G +++EIA L +S T +++ M K + R+ + A + +V Sbjct: 168 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMIKLGARDRAQLVVLAYESGLV 218 >gi|229488619|ref|ZP_04382485.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229324123|gb|EEN89878.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 288 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 A+ S + L+ RE E + +++ G + EIA L +S T+ Y+ ++M K Sbjct: 211 ASPKPSANTPVANTVVLSPREREVMGYVALGLRNAEIAERLSLSVETIKTYMRNLMGKLD 270 Query: 230 TKTRSGAIAYAVRNNIV 246 ++R A+ A R ++ Sbjct: 271 VRSRHEAVVEARRQGLI 287 >gi|256424453|ref|YP_003125106.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039361|gb|ACU62905.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 219 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 4/181 (2%) Query: 70 QEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM 126 L I+ P ++ + + D V ++ + V ++ + Sbjct: 38 DGAHLLEIMEEQQPDVILMDLKMPNMDGIEATKKVREKYANVKVIVLTMYEDDNFIVHLI 97 Query: 127 DNRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185 +N + L + I + + + + LL + + + + + Sbjct: 98 ENGANAYLLKNAEPNEIYEAICTTYEKGFYFNENVNLALLKKVMHKNKQHFKPTFRNEVQ 157 Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE+E L I T+ EI+ + +S TV ++ KT K G + +A RN I Sbjct: 158 LTDRELEVLRLICNEHTTQEISKEIFLSPRTVEGLRQKLLEKTGAKNIVGLVMHAFRNGI 217 Query: 246 V 246 + Sbjct: 218 I 218 >gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 38/82 (46%) Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 +L Y+ D LT RE E L ++++G ++ +IA L +S TV N++ + Sbjct: 140 VLGEYRRMSSAPADEQGLAVPRLTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQA 199 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 +RK R YA+ + Sbjct: 200 TLRKLQLANRVELTRYAIEQGL 221 >gi|300088598|ref|YP_003759120.1| MalT-like ATP-dependent transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528331|gb|ADJ26799.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 904 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 16/245 (6%) Query: 16 DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75 D+ R + DL + +V + + ++ + LL R Sbjct: 662 DDCRVRLLLAKGRMDDLNRWVDASGLSVDGELSYHYDLHHINLARVLLARARHAPTAAGA 721 Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135 L R + +EK + + L VF +N + A D SL Sbjct: 722 HASLRQASSLLTRLLIAAEKAGWVYETIKILVLQAQVFAESNDNKSLQALSD--ALSLAE 779 Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHWGKDFE---- 185 +RI + P +++ LLAA++A K+ D Sbjct: 780 PGGFVRIFVDEGPPMAKLLSEAAAHGNMPDYVGKLLAAFEAEKQKTCDKPDLSPCPSVQP 839 Query: 186 ----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 L+ RE+E L +++G ++ +I + ++ +TV + I K + R+GAIA A Sbjct: 840 LIEPLSQRELEILRLMAQGLSNRQICERVFLALDTVKGHNRKIFDKLQVQRRTGAIARAR 899 Query: 242 RNNIV 246 ++ Sbjct: 900 EFGLL 904 >gi|256391489|ref|YP_003113053.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357715|gb|ACU71212.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 253 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 113 FHTLP--ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170 FH LP + P G + RI ++ D + + Sbjct: 123 FHRLPVFPALFAPLGARRQLVMAVRPDEERRIVVLFNRASPDFTQHD-VAVAEAVRHRIG 181 Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 + + +++ RE + L + G T +IA LGIS TV+ ++ K Sbjct: 182 RALAPFGGPGARREKVSPREADVLDLLCRGLTDRQIATRLGISPRTVDKHLEHAYVKLGV 241 Query: 231 KTRSGAI 237 + R A Sbjct: 242 RCRVQAA 248 >gi|238020554|ref|ZP_04600980.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147] gi|237867534|gb|EEP68540.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147] Length = 224 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 69/175 (39%), Gaps = 13/175 (7%) Query: 77 IVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTE--LFCPVFHTLPENITPPAGMDNRY 130 +V P ++ + + + + + Q RP + + V + + + Sbjct: 43 LVEQTRPDVVLLDLNMPQMNGRDALAQILSSRPEQKVIMLTVSEDSEDLTECIRLGASGF 102 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 + L+ +++ D + + A ++ + +LT RE Sbjct: 103 LLKNIN------ANYLIESIKKVVNGDNAYSPEMTARLVQSLIRPAQAESALS-QLTPRE 155 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 +E L ++ G ++ IA L ++ +T+ ++ +I+RK +R A +A+++ + Sbjct: 156 LETLGHLAAGYSNKAIAKNLNLAESTIKVHVQNILRKLKLDSRVQAAVFAIQHKV 210 >gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 518 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 P + + C L D++ + M L ++D W L AN+ ++ Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPD 423 Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483 Query: 239 YAVRNNIV 246 +A IV Sbjct: 484 WARERGIV 491 >gi|166710760|ref|ZP_02241967.1| putative transcriptional regulator, LuxR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 235 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%) Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217 LL A A K K + L+ RE + L+ + G T+ +A LGI+ TV Sbjct: 146 LLPAMVAEPAKQIPTRRRKPLQDDRLGALSKREKQVLSLLPRGLTNASLAAELGIAPGTV 205 Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245 ++ I++K K R+ A YAV++ + Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233 >gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v] Length = 215 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 95 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIAAVLNISEQTVKVHIRNLLRKLNVR 199 Query: 232 TRSGAIAYAVRNN 244 +R A ++ Sbjct: 200 SRVAATILFLQQR 212 >gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 215 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 35/54 (64%) Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 L ++++G ++ EIA +L +S TV+ +++ I+ K +R+ A+ YA++ IV Sbjct: 159 VLQFMAQGYSNAEIARLLVVSNATVHTHVSRILSKLNVSSRTQAVLYALKRGIV 212 >gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Synergistetes bacterium SGP1] Length = 229 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKSYDVHWGKD 183 D+ C T ++ ++ + +I R E + + S+ ++ Sbjct: 85 DDEDCLATLSAEGVKGFVLKSSGRSELIAAIRAACRGEPYVDPKVAGKLMTSFSRRKNEN 144 Query: 184 F---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240 +L+ RE L W+S+G ++ E+A +S TV N+++ +++K + R+ A A Sbjct: 145 SLLDDLSPREKVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSHMLKKLELRDRTQAAILA 204 Query: 241 VRNN 244 + Sbjct: 205 WKLG 208 >gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 503 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L F + Y + D + + L++ +I D L+ Sbjct: 365 RVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRGSTMITHD-LFHRMWE 423 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +F+S G ++ LT RE+E L +S+G IA L +S TV NY +++ Sbjct: 424 ENEETGLFESQSD--GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 481 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K K R A+ A ++ Sbjct: 482 EKLGVKNREEAVQKAKDIGLL 502 >gi|148557095|ref|YP_001264677.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502285|gb|ABQ70539.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 855 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 1/166 (0%) Query: 78 VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFD 136 V+S V L + V R L E P A L D Sbjct: 688 VASPETALSVAQAMLRDGQAGGRVGTRIKALVLTSLAHEREGDRPAADRSMTEALRLAVD 747 Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 + + I+ R E A +LT RE E L Sbjct: 748 ESVVAPFAEEGPALHPILERIAREEPTSKLARHLEKILQLISASSHPSQLTDREAEILAH 807 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 +++G ++ IA L ++ NTV ++ +I K +R A A A R Sbjct: 808 LADGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAACAFR 853 >gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 514 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 P + + C L D++ + M L ++D W L AN+ + Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRENAPD 423 Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483 Query: 239 YAVRNNIV 246 +A IV Sbjct: 484 WARERGIV 491 >gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272] gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227] Length = 215 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 95 VFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLRER------------- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199 Query: 232 TRSGAIAYAVRNN 244 +R A ++ Sbjct: 200 SRVAATILFLQQR 212 >gi|325104954|ref|YP_004274608.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324973802|gb|ADY52786.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 235 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 43/69 (62%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 H+ +LT RE E ++ +S+GK+S EIA +L IS NTV + +I++K K+ + + Sbjct: 165 QHYPNFAKLTKREKEIISLLSDGKSSPEIADMLFISANTVITHRKNIVKKLGMKSFAHLV 224 Query: 238 AYAVRNNIV 246 +A+ ++V Sbjct: 225 RFAIAFDLV 233 >gi|302869001|ref|YP_003837638.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315504528|ref|YP_004083415.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302571860|gb|ADL48062.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315411147|gb|ADU09264.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202 + P ++ R A A++ ++ +L+ RE + L +++G + Sbjct: 111 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 170 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S +T +I+ + K R+ A+ A+R ++ Sbjct: 171 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|229528208|ref|ZP_04417599.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] gi|229334570|gb|EEO00056.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] Length = 250 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89 L++++ + + + G + + ++ I + DW FD Sbjct: 20 LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 78 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141 + + KY + + E P F T ++ P G + Sbjct: 79 IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 138 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISE 199 G + L K E+ LL+ Y + + L+ RE E L+ + Sbjct: 139 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLEYSDPNRSALLSKREKEVLSLTAL 198 Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 G+ +IA+ LG+S T+ N++ + K T + I A++ Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243 >gi|182436316|ref|YP_001824035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464832|dbj|BAG19352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 354 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + + L+ REVE + I+ G ++ +IA IS TV N+I I K + +RS Sbjct: 277 STPAPNRQQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRS 336 Query: 235 GAIAY 239 AIA+ Sbjct: 337 EAIAH 341 >gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus] gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri] Length = 224 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 17/210 (8%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 ++ ++ + +T+ V ++LL K D + ++P + Sbjct: 14 IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73 Query: 92 LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140 + KY ++ P+ + EN N S A Sbjct: 74 DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133 Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194 G++ + D L I L+ + ++ ++ K + +LT RE ECL Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193 Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASI 224 W EGK+S +I+ ILG S TV ++ + Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNA 223 >gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7] gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] Length = 193 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 39/72 (54%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + + +L+ REV+ L I +G T+ EIA L IS NTV + +I K KT S Sbjct: 115 SGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVS 174 Query: 235 GAIAYAVRNNIV 246 G YA+ N I+ Sbjct: 175 GLTFYAIMNGII 186 >gi|229520043|ref|ZP_04409472.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|229525089|ref|ZP_04414494.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229338670|gb|EEO03687.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229342992|gb|EEO07981.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|327483254|gb|AEA77661.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 214 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216 R LL Y+ F+S+ V +LT RE++ L + G ++ +IA L IS T Sbjct: 129 PRHVSSQLLHYYRY-AFQSHQVQAT--VDLTAREIQILRCLQTGASNMQIAENLFISEFT 185 Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 V +++ I +K K R AIA+ V N++ Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214 >gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032] gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter turicensis z3032] Length = 210 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 22/200 (11%) Query: 60 HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF------ 113 H L+V + L ++ +D F V A S + + ++ Sbjct: 4 HVLIVDDHPLMRRGLRQLLETDARFR-VTGEASSGAEAIAQAQELAPDVILLDLNMRGLS 62 Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----AYQ 169 N+ G+ R LT AR + M+ +L+D E L A A Sbjct: 63 GLDTLNMLRRDGVSARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEALLEAIRDGAAG 122 Query: 170 ANMF-----------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218 A +F + + LTGRE++ L ++ G ++ +IA L IS TV Sbjct: 123 AGVFSEQVQAYLLTREPEEQRNAPFALLTGRELDVLQEVARGLSNKQIAATLHISEETVK 182 Query: 219 NYIASIMRKTATKTRSGAIA 238 +I +++RK ++R A Sbjct: 183 VHIRNLLRKLNVRSRVAATV 202 >gi|159039051|ref|YP_001538304.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917886|gb|ABV99313.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 221 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202 + P ++ R A A++ ++ +L+ RE + L +++G + Sbjct: 110 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 169 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 IA L +S +T +I+ + K R+ A+ A+R ++ Sbjct: 170 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|186470967|ref|YP_001862285.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197276|gb|ACC75239.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 231 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 12/157 (7%) Query: 97 KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 + + L V + G Y T D + + ++ + I Sbjct: 73 GLAELAPQARVLMLTVSEDEQDLAAALRGGARGYLLKTVDSSAMADAIVRIMAGESTISP 132 Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEI 206 + + L++A+QA L+ R+ E L I+ G+T+ EI Sbjct: 133 EMTGK--LVSAFQALQPGEVPPAASPSVLAPAVPDPIESLSARQEEILAHIARGETNKEI 190 Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 A L I+ TV ++ +++K +R A YAV Sbjct: 191 ARALNIAETTVKIHVQQVLKKLKLASRVQAATYAVMR 227 >gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 235 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 10/164 (6%) Query: 85 DLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRI 142 DL ++ + L L V T+ + + S I Sbjct: 76 DLESGYGINLLRRVKAELPTCQLLIVLVRETQTVVQEAMEAFADGVVFKSSLGTGRGDLI 135 Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 + +G + +++ I D+ + EL+ RE+E ++ G Sbjct: 136 SALRTLAEGGVYFPEQIRRIAA-------STPQPDLPPLVE-ELSPRELEVAAGVARGLK 187 Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 ++ IA +LG+S TV +++ + M K + R+ A+ ++ Sbjct: 188 NNAIASLLGLSVETVKSHVGNAMDKLGARDRTQMAVMALLYGLI 231 >gi|223938200|ref|ZP_03630096.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893072|gb|EEF59537.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 224 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V + + L + + G P + L E+ A + Sbjct: 92 VQKVMEAGALGYLVKQSAADDLLTAIREVYKGNNFFSPA----IAKGLSELKREAFTNGH 147 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 F+ VH LT RE E L I+EG+ + +IA L IS TV + +M K Sbjct: 148 AFRESGVH------LTAREREVLQLIAEGRANKQIADDLAISIKTVEKHRQQVMNKLNIH 201 Query: 232 TRSGAIAYAVRNNIV 246 + YA+ +V Sbjct: 202 DVASLTRYAISKGMV 216 >gi|294012984|ref|YP_003546444.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676314|dbj|BAI97832.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 16/222 (7%) Query: 32 LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91 L + + M + E +G +F L + I ++P A Sbjct: 3 FLQCINQVRTRDDMGSVMRVIAEQLGFQYFALTQHVDVVAAGSGVIHIHNYPDRWADFYA 62 Query: 92 LSEKDKYYNVLQRP-------TELFCPVFHTLPENITP------PAGMDNRYCSLTFDVA 138 + V + P L AG+ + + + Sbjct: 63 ANALGITDPVHRACHMTSWGFRWTQMPTLIPLTSGDHRHLARGRQAGIGDGFTIPSNIGG 122 Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLT 195 + R + DRL LL Y + + + +T R+ +C+ Sbjct: 123 QPPGSCTFANEGDRPLREDRLLLAQLLGNYAFDAARRLWSMPRRAMTAPLITDRQRDCVQ 182 Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 W + GK+ E + IL ISR TV ++I + R + Sbjct: 183 WAARGKSDWETSQILDISRETVTSHIKDACARYQVNKRILLV 224 >gi|17549201|ref|NP_522541.1| nitrate/nitrite response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431453|emb|CAD18131.1| probable nitrate/nitrite response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 222 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 6/142 (4%) Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 + V E Y + + G+ +I L+A Sbjct: 80 VMLTVSEEADELKAALRDGARGYLVKNIEADTLVAGVRRAAAGEPVISES--MTAKLVAH 137 Query: 168 YQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 ++A + LT RE E + ++ G+++ EIA L ++ +TV ++ + Sbjct: 138 FRAPEKAAPAAPAAAASVSADRLTPREREIVRGLARGESNKEIARALDVAESTVKIHVQN 197 Query: 224 IMRKTATKTRSGAIAYAVRNNI 245 I++K +R YAV + + Sbjct: 198 ILKKLNLTSRVQVAVYAVEHGL 219 >gi|293390864|ref|ZP_06635198.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951398|gb|EFE01517.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D7S-1] Length = 209 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIG----LLAA 167 G+D R LT A+ I ++ +L+D +L I +L+ Sbjct: 71 ALRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSD 130 Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 N+ + LT RE+ L I+ G ++ +IA L IS TV +I +++RK Sbjct: 131 SIKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRK 190 Query: 228 TATKTRSGAIAYAVRNN 244 +R A + Sbjct: 191 LNVHSRVAATVLYFEHK 207 >gi|253575646|ref|ZP_04852982.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14] gi|251844984|gb|EES72996.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14] Length = 74 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 F LT RE E + + KT+ +IA L IS TV N+I+++M+K K R+ A+ Sbjct: 4 SDRNSKFLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRAQAV 63 Query: 238 AYAVRNN 244 ++ Sbjct: 64 VELIKLG 70 >gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 189 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 19/163 (11%) Query: 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 + + ++E K + + F + Y + Sbjct: 46 MPIQSGLDVAETLKKEKSV--CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAS 103 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203 + + R I +D ++ + W + L+ RE E L EGKT+ Sbjct: 104 IRNVMKGKREISQDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTA 146 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EIA L +S TV NYI+ ++ K K R AI A + Sbjct: 147 NEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 12/164 (7%) Query: 87 VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143 VR ++ + +++R + F I Y D+ Sbjct: 54 VRMPVMTGIEATKRLIERDPNVKIVMLTTFIDERYAIEALKAGAKGYILKDADMES---- 109 Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201 LF L L G +AA + K+ L RE E + + +G+ Sbjct: 110 ---LFATIEKALLGELVLDGQVAAKVMPKLLQHSAPQEKEQIPPLAEREKEIIRLVGQGR 166 Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + EIA L +S TV NYI+ + K + R+ +AV+++I Sbjct: 167 NNAEIAAELYLSVGTVKNYISQLFIKLGVRDRTQLAIFAVKHDI 210 >gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] Length = 215 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 95 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199 Query: 232 TRSGAIAYAVRNN 244 +R A ++ Sbjct: 200 SRVAATILFLQQR 212 >gi|289642550|ref|ZP_06474693.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507638|gb|EFD28594.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 389 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 11/120 (9%) Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVH 179 + + F AR+ + P + + + L A+ + D Sbjct: 265 LALQRERIAKAFCTARMMTEGLSAAPVRLVRQSTPAAESKPPVSLPGMLAASAPRLPD-- 322 Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 LT RE E L ++ G T+ +IA L +S TV +++ I+RK R+ AIA Sbjct: 323 -----GLTPREREVLALLASGATNAQIADRLTVSETTVKSHVKHILRKLHASNRAEAIAR 377 >gi|119714205|ref|YP_919347.1| response regulator receiver [Nocardioides sp. JS614] gi|119526114|gb|ABL79484.1| response regulator receiver [Nocardioides sp. JS614] Length = 216 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 LT RE E ++ G ++ EI L IS +T ++ASI++K + R A+ A + + Sbjct: 152 LTNREREVWELVARGLSNAEITERLVISEHTTKTHVASILQKLHVRGRVQAVVLAYESGL 211 Query: 246 V 246 V Sbjct: 212 V 212 >gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047] Length = 224 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 10/192 (5%) Query: 51 ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 AL + ++F L L SD+ LV + + D + + + + Sbjct: 19 ALADAFEGANFSLAHDPREVFDLLGR--KSDYDLALV-DLKMPGMDSFEFLERLCQQFKS 75 Query: 111 PVFHTLPENITP------PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 + P A + + + + L+ + L Sbjct: 76 LKVAVISGLDDPETIKKAIALGAVGFIPKSVSEDTLINAVRLVLRGDTYLPPHLLKVAIE 135 Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 + + D+ D LT R+ E L + EG+++ +IA L +S NT+ +++ + Sbjct: 136 PDPDEGALEIPVDLKRAYDV-LTERQKEILLLLGEGRSNKDIARRLDLSENTIKVHVSGV 194 Query: 225 MRKTATKTRSGA 236 +R R+ A Sbjct: 195 LRALNLNNRTQA 206 >gi|326330415|ref|ZP_08196723.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951690|gb|EGD43722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 362 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 32/71 (45%) Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 G LT RE + + G T+ EIA L +S TV +++ I+RK R Sbjct: 285 PRQPAARGAMSGLTAREQDVFALLVSGATNPEIADRLTVSETTVKSHVKHILRKLRVSNR 344 Query: 234 SGAIAYAVRNN 244 + AIA VR Sbjct: 345 AEAIAKYVRGG 355 >gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] Length = 304 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 3/141 (2%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L F + Y + D + + L++ G +I D L+ Sbjct: 166 RVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRGGAMITHD-LFHRMWE 224 Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 + +F+S G ++ L+ RE+E L +S+G IA L +S TV NY +++ Sbjct: 225 ENKETGLFESRSD--GIEYGLSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 282 Query: 226 RKTATKTRSGAIAYAVRNNIV 246 K K R A+ A ++ Sbjct: 283 EKLGVKNREEAVQKAKDIGLL 303 >gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 515 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179 P + + C L D++ + M L ++D W L AN+ ++ Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPD 423 Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483 Query: 239 YAVRNNIV 246 +A IV Sbjct: 484 WARERGIV 491 >gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] Length = 225 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 152 --EMFGAKEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209 Query: 232 TRSGAIAYAVRNN 244 +R A ++ Sbjct: 210 SRVAATILFLQQR 222 >gi|298249263|ref|ZP_06973067.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547267|gb|EFH81134.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 889 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 16/173 (9%) Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSL 133 L + + L+E++ + + L VF + P G + Sbjct: 721 LAQMLTLAEEEGRMRAVIKTKVLQALVFQAKGATERAMSTIIQALVLAEPEGYVFTFTEE 780 Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193 ++AR+ + G + LR + L A S H L+ RE E Sbjct: 781 GAEMARLLKAVHAAQRTGSLALRLAPEYLQRLLDACAERRTSSSSH----ILLSEREREI 836 Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + ++ G ++ EIA L I+ +TV ++ I K +R+ AIA A N++ Sbjct: 837 VRLLASGLSNQEIADHLVIAMSTVKWHVRQIFNKLGVNSRTQAIAQARELNVL 889 >gi|297538580|ref|YP_003674349.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257927|gb|ADI29772.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 212 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 13/132 (9%) Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172 L D L ++ + G+ +L IL++ L L Sbjct: 94 LEALRAGADGYLLKDMEPEDLCDNLKKAMSGVTVLHESLTEILKNALISPSL-------- 145 Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 ++ LT RE E L ++ G + IA LGIS TV +I ++ K + Sbjct: 146 -----SRSEEEVSLTEREREILECLANGLNNKTIARSLGISDTTVKVHIKHLLSKLKLTS 200 Query: 233 RSGAIAYAVRNN 244 R A +A R Sbjct: 201 RLEAAVWAHRKK 212 >gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 253 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 ELT RE++ L ++ G ++ EI+ +S TV ++ ++ KT ++ R A+ YA + Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240 Query: 245 IV 246 +V Sbjct: 241 VV 242 >gi|229821513|ref|YP_002883039.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567426|gb|ACQ81277.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 232 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 10/144 (6%) Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 L V + + Y + + + ++ + + L Sbjct: 96 RFLALSVSDAAEDVVAVIRAGARGYVTKSITGTDLSDAVVRVAGGDAVFSP-------RL 148 Query: 166 AAYQANMFKSY--DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 A + + F + DV G + +LT RE E + I+ G T E+A L IS TV +++ Sbjct: 149 AGFVLDAFGAIGGDVATGDELDKLTAREREVMRLIARGYTYREVASELFISIKTVETHVS 208 Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246 +++RK +R +A + ++ Sbjct: 209 AVLRKLQLSSRHELTRWAAQRRLL 232 >gi|15077445|gb|AAK83172.1|AF333038_14 putative two-component regulator [Streptomyces viridochromogenes] Length = 206 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE++ +S G ++ EIA +LG++ TV ++A I+ K ++R A A + + Sbjct: 127 LSDRELQVFLLLSHGYSNREIAALLGVTERTVKAHMAQILAKLGVESRLQAGLVAFAHGL 186 >gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 78/223 (34%), Gaps = 17/223 (7%) Query: 33 LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-------LFQEQKLDSIVSSDWPFD 85 + ++ +D + M L E +L D L Q L ++ D Sbjct: 1 MIQIALVDDEALFRKGMKLLLEDYEGITVMLEAQDGEHLLQQLRQASTLPDVLLLDMKMP 60 Query: 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 + + ++ + + + + + Y + + + Sbjct: 61 NLNGVDTAKVLQ--EAFPTLKIIVLSTYFSKAFIVNMIELGAGAYLPKNANPDEVVATIR 118 Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTS 203 ++ G + +L + NM + F ++T RE E L I E T+ Sbjct: 119 EVYSNGFSYNQ------AVLEVIRDNMLQKSKPKMPLSFGVDITSREKEILQLICEEYTT 172 Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 EIA L IS TV+ + +++ K + K +G + YA++ +V Sbjct: 173 SEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQLV 215 >gi|282860465|ref|ZP_06269531.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564201|gb|EFB69737.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 251 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 25/217 (11%) Query: 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89 D A ++ + LTE + A L + ++L + W V Sbjct: 14 RDAYAHVVVASPAFVLQGQTATLTEALTALTPTTCDLLLIEARELARV---PWAAAQVSL 70 Query: 90 MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149 + + + + P + + P + + + V R G M++ P Sbjct: 71 RLAAARTRTAVLGTIPPAGLPLLTEAGVTGVFGPCLEPDAFFTALDAVCR---GAMVIAP 127 Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209 + G LT RE E L ++ + IA+ Sbjct: 128 AP-------------------SRTPPAPAAHGSLSPLTQREREVLALVATQPDNTAIALA 168 Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 LG+S TV ++I +MRK A +R+ + A + ++ Sbjct: 169 LGVSPLTVKSHINRVMRKLAVSSRAQLVILAYESRLI 205 >gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 8/177 (4%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129 V + P ++ + + + D + Q PV F +T Sbjct: 36 DTVRREAPDVVLLDIRMPDVDGLTVLAQLCALPDPPVVAMLTTFDADEYILTALRSGAAG 95 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + + ++ + L G ++ + A + D H + LT R Sbjct: 96 FLLKDTEPDQLAQVVRTLAAGGVVMSPKASRAVWQSHPRAATV--DDDEHVARFGLLTER 153 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E + L ++EG ++ EI ++ +S TV +++++I+ K R A A R ++ Sbjct: 154 ERQVLVLVAEGLSNAEIGTVVHLSEGTVKDHVSAILGKLGVAGRVRAALLAQRAGLL 210 >gi|300361177|ref|ZP_07057354.1| two component system response regulator [Lactobacillus gasseri JV-V03] gi|300353796|gb|EFJ69667.1| two component system response regulator [Lactobacillus gasseri JV-V03] Length = 227 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 6/174 (3%) Query: 78 VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131 + + P ++ + + D V ++ ++ + T ++ + + + Y Sbjct: 46 IEKNKPDIILMDVRMPIMDGTVCTKYVKEKYPDIKVIILTTFDDDDFIFSALKYGASGYL 105 Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191 A + + + G +I D ++ L + A + V+ + + + E Sbjct: 106 LKGGSPADLFTSIRTVAQGGAMINPDITEKVFRLFSKMAQSNYAISVNDKETKDFSKSEW 165 Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + + G ++ EIA L +S TV NYI+ I+ K + R+ +AV+ + Sbjct: 166 CVIQQVGLGLSNKEIAAKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTGV 219 >gi|271969439|ref|YP_003343635.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512614|gb|ACZ90892.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 11/177 (6%) Query: 76 SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNR 129 S P ++ + + D + E + F T + Sbjct: 42 RQARSTEPDVILMDIRMPGMDGIEATRRILAERPATKVVILTTFDTDEHVFAALRAGASG 101 Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + + A +R + ++ ++ + Q + V LT R Sbjct: 102 FLTKEVAPAELRHAVAVVAAGEALLSPSVTRRV-----VQQFAHRPAPVSGDGLAVLTVR 156 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 E E + ++EG ++D+IA L IS T ++ + K + R+ + A +V Sbjct: 157 EREVVRLVAEGLSNDQIAAKLVISPLTAKTHVTRALMKLNARDRAQLVILAYETGLV 213 >gi|187923501|ref|YP_001895143.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714695|gb|ACD15919.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 522 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE E L IS G ++ E+A IL +S +TV ++ S+ RK TR+ A A Sbjct: 462 LSPREAEVLKHISLGASNKEVARILELSPSTVRTHVESVFRKLECSTRAAATLKASALGC 521 Query: 246 V 246 + Sbjct: 522 I 522 >gi|150376486|ref|YP_001313082.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031033|gb|ABR63149.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 219 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 + ELT RE E L ++ G ++ +IA L + TV +++ IM K Sbjct: 138 GQLLNPAPAKSNLVAELTRREQEVLHLVASGMSNKQIARKLDLHEKTVKHHMTQIMAKLN 197 Query: 230 TKTRSGAI 237 R+ A Sbjct: 198 VANRTEAA 205 >gi|289662128|ref|ZP_06483709.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 923 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 37/61 (60%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + RE+E L ++ G ++ +IA L +S NT+ ++ ++ RK ++R A+A A++ + Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTIKFHLKNLYRKLDARSRENALAQALQRGL 908 Query: 246 V 246 + Sbjct: 909 L 909 >gi|239627726|ref|ZP_04670757.1| two-component protein Kinase [Clostridiales bacterium 1_7_47_FAA] gi|239517872|gb|EEQ57738.1| two-component protein Kinase [Clostridiales bacterium 1_7_47FAA] Length = 209 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 D +LT RE++ + +++G + EIA L ++ TV N I+ ++ K K R+ +AV+ Sbjct: 145 DLDLTPREMDIMRLVAQGMDNREIAAGLFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVK 204 Query: 243 NNI 245 NN+ Sbjct: 205 NNL 207 >gi|269138242|ref|YP_003294942.1| two-component response regulator EsrB, LuxR family [Edwardsiella tarda EIB202] gi|61743009|gb|AAX55229.1| EsrB [Edwardsiella tarda] gi|237861358|gb|ACR24241.1| EsrB [Edwardsiella tarda] gi|267983902|gb|ACY83731.1| two-component response regulator EsrB, LuxR family [Edwardsiella tarda EIB202] gi|304558285|gb|ADM40949.1| EsrB [Edwardsiella tarda FL6-60] Length = 214 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 15/169 (8%) Query: 83 PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV 137 P ++ + L D + +R +++ V E + + L Sbjct: 54 PDLVLLDLGLPGMDGVDVIRQLRRRWSDMRIVVVTASSEARRGSEALAAGALAYVLKQSP 113 Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 + + M G+ + L L+A+ ++ LT RE + L + Sbjct: 114 QQTLLAAMQHASLGKTFVDPALRLDSLVAS----------SDMAQEPPLTLRERQILKLV 163 Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 +EGK + +IA +L IS TV + ++MRK + +A R ++ Sbjct: 164 AEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWARRLGVL 212 >gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] Length = 207 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 9/168 (5%) Query: 72 QKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130 Q+L+ ++ + FD++ + + L R EL L PP Sbjct: 38 QELEDLLEKEGSFDIILLDLVMPGMKPGLEALTRILELNQNKPVMLISGNAPPG------ 91 Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 + + R G + R ++ G + + S + L+ + Sbjct: 92 -VIHEALHRGAAGYVEKSQSARSLVNAINFVLAGEIYVPMSLRLNSVRPSITDEKGLSPK 150 Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 E+E L ++ G + EIA LGIS TV ++ SI K K R+ A Sbjct: 151 ELEVLRCLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQAA 198 >gi|225865300|ref|YP_002750678.1| response regulator [Bacillus cereus 03BB102] gi|225788745|gb|ACO28962.1| response regulator [Bacillus cereus 03BB102] Length = 597 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 97/253 (38%), Gaps = 11/253 (4%) Query: 3 FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62 E Q + + EQ T V ++P ++ + +I L + +L + + Sbjct: 347 LEQVQGTLSVQSNVEQGTLIVCNIPLQTKPVHDIIRLLVVDDQALITNSLEQILENQTDF 406 Query: 63 LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119 +V + + + P ++ + + E + +L+ R + + T ++ Sbjct: 407 IVAGKAYDGSEALILCEQLEPDIVLMDIQMPEMNGIEALLEMKRRWPNMKIVLMTTFEDS 466 Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173 + ++ Y + ++ L L++ G I + R++E L Q Sbjct: 467 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 526 Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 KS + + LT RE+E L +S G IA L +S T+ NY +++ K R Sbjct: 527 KSTKQTF--PYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNR 584 Query: 234 SGAIAYAVRNNIV 246 AI A NI+ Sbjct: 585 EEAIKMARTENIL 597 >gi|194289452|ref|YP_002005359.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223287|emb|CAQ69292.1| putative Prolyl aminopeptidase, LuxR DNA binding domain C_term [Cupriavidus taiwanensis LMG 19424] Length = 366 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224 L +A + + LT RE + + I++G+ + +IA L + TV N+I SI Sbjct: 281 LEEVRAFLPSAQPARCPAFTALTRRERDIVELIAQGRDNAQIAAHLDLCEKTVRNHITSI 340 Query: 225 MRKTATKTRSGAIAYAVRNN 244 K + R AI A + Sbjct: 341 FAKLEVENRGQAIVLARKAG 360 >gi|159037739|ref|YP_001536992.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916574|gb|ABV98001.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 240 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 17/169 (10%) Query: 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIR 141 +R +S + + + EL PV IT N + A + Sbjct: 56 LRLQDMSGGEFLRRLREGGAELCPPVVVYALGEITDSMVDLVRAGANGVLAEDASKAELL 115 Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTW 196 I + + ++ +A + +S D G + LTGRE E L Sbjct: 116 IAVRAVASGHAMLGPP-------VARRMLDWLRSSDDPVGVPYPAVANNLTGREREILLL 168 Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 + G ++DEIA L IS TV ++ + K K R+ + +A + + Sbjct: 169 TARGLSADEIAGRLFISVATVRTHLYRLRCKLQLKDRAQLVTFAYQTGL 217 >gi|326776946|ref|ZP_08236211.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657279|gb|EGE42125.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 344 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + + L+ REVE + I+ G ++ +IA IS TV N+I I K + +RS Sbjct: 267 STPAPNRQQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRS 326 Query: 235 GAIAY 239 AIA+ Sbjct: 327 EAIAH 331 >gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 151 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 S + + L RE E L +++G ++ EIA L IS +TV +++++ K K+R Sbjct: 79 SLNEKELEKLNLNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRI 138 Query: 235 GAIAYAVRNNIV 246 A+ A R I+ Sbjct: 139 KALEKAKRLKII 150 >gi|269955047|ref|YP_003324836.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303728|gb|ACZ29278.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 230 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%) Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190 L + + G +L L + + + + L+ RE Sbjct: 102 FMLKSSPRAHLLHAVRTAASGEALLDPSLTRRLVESHVRRPRAVEPGQTPAQLAGLSPRE 161 Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 + L ++ G+++ EIA L ++ TV ++A+++RK + R+ A+ +V Sbjct: 162 RDVLQALARGESNAEIAGTLFLAETTVKTHVAAVLRKLGLRDRTQAVILGYEIGLV 217 >gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 514 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180 P + R C L D++ + M L ++D W L AN+ ++ Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424 Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239 G +LT RE + + G EIA LG++ NTV N++A+I K +R AI + Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484 Query: 240 AVRNNIV 246 A IV Sbjct: 485 ARERGIV 491 >gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T] gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301] gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401] gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 2457T] gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 301] gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401] gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017] gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T] gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70] gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671] gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71] gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71] gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218] gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304] Length = 215 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 95 VFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLRER------------- 141 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199 Query: 232 TRSGAIAYAVRNN 244 +R A ++ Sbjct: 200 SRVAATILFLQQR 212 >gi|307327124|ref|ZP_07606313.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887205|gb|EFN18202.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 216 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 12/133 (9%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 V+ L + D LT V G ++ P+ L Q Sbjct: 93 VYTALSNGASGFLLKDAGPALLTEAVRAAVRGDAMVAPQI------------TLRLLQHF 140 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 LT RE E + I+ G T+ EIA L I+ +TV ++ S+ K + Sbjct: 141 TKARRRGASEPAEPLTDREEEVIQGIARGLTNPEIAAELYIAPSTVKTHLGSVQAKLGLR 200 Query: 232 TRSGAIAYAVRNN 244 R A+A R+ Sbjct: 201 NRVEVAAWAFRSG 213 >gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302] gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9] gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302] gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 85-1] gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 117-3] gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9] Length = 225 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 VF + D+ L + G + + LR+R Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + LT RE++ L +++G ++ +IA +L IS TV +I +++RK + Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209 Query: 232 TRSGAIAYAVRNN 244 +R A ++ Sbjct: 210 SRVAATILFLQQR 222 >gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 12/135 (8%) Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171 F +L + L G L+P L+ Y Sbjct: 94 FFESLKAGASGYVLKSVADRDLLEACRAAMRGEPFLYPGAI---------TALIRDYLQR 144 Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 + + V + LT RE E + I+EG ++ EIA L IS TV+ + A+I++K + Sbjct: 145 VRQGERV---PESILTPREEEVVKLIAEGNSAKEIAETLVISVKTVDRHRANILQKLGMR 201 Query: 232 TRSGAIAYAVRNNIV 246 R YA+R +V Sbjct: 202 DRLDLTRYAIRAGLV 216 >gi|255534826|ref|YP_003095197.1| LuxR family transcriptional regulator protein [Flavobacteriaceae bacterium 3519-10] gi|255341022|gb|ACU07135.1| LuxR family transcriptional regulator protein [Flavobacteriaceae bacterium 3519-10] Length = 280 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 42/79 (53%) Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 +Q + KS +V G +LT RE E L+ I+ G + EIA + +S +TV ++ +I+ K Sbjct: 202 HQMHYNKSPNVIGGDFVKLTQRETEILSLIARGYSGSEIAKNICVSEHTVKSHRRNIIAK 261 Query: 228 TATKTRSGAIAYAVRNNIV 246 + I+ A+ ++ Sbjct: 262 MRVRNTKELISKAIEMAVI 280 >gi|213967183|ref|ZP_03395332.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301381082|ref|ZP_07229500.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060741|ref|ZP_07252282.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302133226|ref|ZP_07259216.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928025|gb|EEB61571.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 910 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 L+ RE+ L I++G ++ EI+ L IS +TV + + I K + R+ A+A A + Sbjct: 849 LSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908 Query: 246 V 246 + Sbjct: 909 L 909 >gi|330809600|ref|YP_004354062.1| two-component Response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377708|gb|AEA69058.1| Putative two-component Response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 210 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 65/171 (38%),