BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780694|ref|YP_003065107.1| probable transcriptional
regulator protein, LuxR family [Candidatus Liberibacter asiaticus str.
psy62]
         (246 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score =  514 bits (1324), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH
Sbjct: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI
Sbjct: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW
Sbjct: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA
Sbjct: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240

Query: 241 VRNNIV 246
           VRNNIV
Sbjct: 241 VRNNIV 246


>gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 235

 Score = 48.1 bits (113), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE  CL    +G TS+EIA  LG+S +TVN Y+ S   K     R  AIA A+R
Sbjct: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230


>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score = 28.5 bits (62), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGM-----DNRYC--SLTFDVARIRIGLMLLFP 149
           ++ + +Q+ +  F P  + +P NI  PA +     D RY    L   VA+I I    L+P
Sbjct: 243 EFLHYMQKQSNNFQPNLY-IPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYP 301

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                    L   G +A    N F  Y+ HW 
Sbjct: 302 S--------LSLNGSIALTHDNSFPGYNTHWS 325


>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 492

 Score = 25.0 bits (53), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 19 RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLF 69
          R  FV  L   S ++    P D +++W  R+Y  + +V  S  +F L  W L 
Sbjct: 6  RYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILL 58


>537021.9.peg.233_1 
          Length = 72

 Score = 24.3 bits (51), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           TPP    N    L+ +  RIRIG++++F K
Sbjct: 9   TPPKAHPN---ILSSNTERIRIGVLIIFNK 35


>gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 351

 Score = 22.3 bits (46), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 181 GKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GK+F  E+T     C  ++   +TS E  ++L   +N +  ++A  +R       +  +A
Sbjct: 181 GKNFVAEITINRAICQKYL---RTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLA 237

Query: 239 Y 239
           Y
Sbjct: 238 Y 238


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,020
Number of Sequences: 1233
Number of extensions: 6264
Number of successful extensions: 20
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 10
length of query: 246
length of database: 328,796
effective HSP length: 72
effective length of query: 174
effective length of database: 240,020
effective search space: 41763480
effective search space used: 41763480
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)