HHsearch alignment for GI: 254780695 and conserved domain: COG4669
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion].
Probab=99.95 E-value=1.2e-26 Score=196.43 Aligned_cols=177 Identities=23% Similarity=0.309 Sum_probs=156.4
Q ss_pred HHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEE--CCCCC-EEEECHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 9999984699824503899989999999999977992999--18997-79951899999999999769988776632565
Q gi|254780695|r 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 (563)
Q Consensus 37 ~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~--~~~g~-~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el 113 (563)
T Consensus 11 l~l~l~L~gCk-~~Ly~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~GlPr~~f~~l~d~ 89 (246)
T COG4669 11 LLLILLLTGCK-VDLYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNGLPRKKFTTLGDI 89 (246)
T ss_pred HHHHHHHHCCH-HHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 99999983356-98870798767889999999859760110467785589976899999999998669998777749985
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHH-HHHHHH
Q ss_conf 3058884259999999999999999999996057631489999833666555555587159997068778988-999999
Q gi|254780695|r 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIR 192 (563)
Q Consensus 114 ~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~~~-qv~~I~ 192 (563)
T Consensus 90 Fp~-dgLVsSP~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK 168 (246)
T COG4669 90 FPK-DGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIK 168 (246)
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 876-5665782899999999999999999975676588889997577786678888740689999568898167689999
Q ss_pred HHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 99986540188352699828983
Q gi|254780695|r 193 HLVAAAVPNLDMGDVTVLDSTGK 215 (563)
Q Consensus 193 ~lVa~sV~gL~~e~VtVvD~~G~ 215 (563)
T Consensus 169 ~LV~nSv~gL~YenISVVl~~~~ 191 (246)
T COG4669 169 RLVANSVPGLQYENISVVLVPAS 191 (246)
T ss_pred HHHHHCCCCCCHHCEEEEEEECC
T ss_conf 99981567776000699982044