HHsearch alignment for GI: 254780695 and conserved domain: COG4669

>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion].
Probab=99.95  E-value=1.2e-26  Score=196.43  Aligned_cols=177  Identities=23%  Similarity=0.309  Sum_probs=156.4

Q ss_pred             HHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEE--CCCCC-EEEECHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             9999984699824503899989999999999977992999--18997-79951899999999999769988776632565
Q gi|254780695|r   37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYEL  113 (563)
Q Consensus        37 ~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~--~~~g~-~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el  113 (563)
T Consensus        11 l~l~l~L~gCk-~~Ly~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~GlPr~~f~~l~d~   89 (246)
T COG4669          11 LLLILLLTGCK-VDLYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNGLPRKKFTTLGDI   89 (246)
T ss_pred             HHHHHHHHCCH-HHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             99999983356-98870798767889999999859760110467785589976899999999998669998777749985


Q ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHH-HHHHHH
Q ss_conf             3058884259999999999999999999996057631489999833666555555587159997068778988-999999
Q gi|254780695|r  114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIR  192 (563)
Q Consensus       114 ~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~~~-qv~~I~  192 (563)
T Consensus        90 Fp~-dgLVsSP~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK  168 (246)
T COG4669          90 FPK-DGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIK  168 (246)
T ss_pred             CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf             876-5665782899999999999999999975676588889997577786678888740689999568898167689999


Q ss_pred             HHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             99986540188352699828983
Q gi|254780695|r  193 HLVAAAVPNLDMGDVTVLDSTGK  215 (563)
Q Consensus       193 ~lVa~sV~gL~~e~VtVvD~~G~  215 (563)
T Consensus       169 ~LV~nSv~gL~YenISVVl~~~~  191 (246)
T COG4669         169 RLVANSVPGLQYENISVVLVPAS  191 (246)
T ss_pred             HHHHHCCCCCCHHCEEEEEEECC
T ss_conf             99981567776000699982044