Query gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 563
No_of_seqs 144 out of 1037
Neff 8.2
Searched_HMMs 33803
Date Wed Jun 1 15:00:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780695.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1yj7_A ESCJ; mixed alpha/beta 100.0 1E-29 3E-34 216.3 10.0 101 113-219 2-103 (103)
2 >1yj7_A ESCJ; mixed alpha/beta 97.8 4.5E-05 1.3E-09 52.4 5.6 59 49-107 3-64 (68)
3 >2hfv_A Hypothetical protein R 96.7 0.0046 1.4E-07 39.0 6.3 62 44-105 19-92 (97)
4 >2wkb_A Macrophage migration i 71.5 6.1 0.00018 18.3 6.2 81 130-211 14-99 (125)
5 >2h8r_A Hepatocyte nuclear fac 66.9 6 0.00018 18.3 3.3 31 522-552 12-42 (122)
6 >2epi_A UPF0045 protein MJ1052 62.9 9 0.00026 17.2 4.4 49 57-105 23-74 (100)
7 >1ic8_A Hepatocyte nuclear fac 55.9 12 0.00035 16.4 3.3 31 522-552 11-41 (85)
8 >2aal_A Malonate semialdehyde 54.5 12 0.00036 16.2 7.1 80 130-210 15-106 (131)
9 >1vk8_A Hypothetical protein T 53.3 13 0.00038 16.1 5.5 49 57-105 32-83 (106)
10 >2ibo_A Hypothetical protein S 52.9 13 0.00039 16.1 5.6 48 58-105 20-70 (104)
11 >1yqh_A DUF77, IG hypothetical 51.5 14 0.00041 15.9 7.2 57 50-106 16-77 (109)
12 >1otf_A 4-oxalocrotonate tauto 50.8 14 0.00042 15.9 4.4 36 175-210 3-41 (62)
13 >3fwu_A Macrophage migration i 50.6 14 0.00042 15.8 8.0 86 120-210 30-119 (124)
14 >1mww_A Hypothetical protein H 50.3 14 0.00042 15.8 10.5 82 129-210 12-100 (128)
15 >1uiz_A MIF, macrophage migrat 50.2 14 0.00042 15.8 6.7 77 134-210 18-98 (104)
16 >1lxj_A YBL001C, hypothetical 48.5 15 0.00045 15.6 6.3 51 57-107 23-77 (104)
17 >2g80_A Protein UTR4; YEL038W, 46.0 6.7 0.0002 18.0 0.7 35 526-560 27-61 (78)
18 >1wom_A RSBQ, sigma factor SIG 44.1 18 0.00052 15.2 2.6 20 534-553 184-203 (204)
19 >1lxn_A Hypothetical protein M 43.4 18 0.00054 15.1 5.9 51 57-107 19-74 (99)
20 >1r3d_A Conserved hypothetical 41.5 19 0.00057 14.9 2.5 19 534-552 170-188 (191)
21 >1hfo_A Migration inhibitory f 39.8 21 0.00061 14.8 6.7 76 135-210 18-97 (103)
22 >3brc_A Conserved protein of u 35.9 23 0.00067 14.5 2.1 41 207-252 76-116 (120)
23 >2kog_A Vesicle-associated mem 35.7 24 0.0007 14.3 3.1 31 381-411 38-68 (119)
24 >1zhv_A Hypothetical protein A 35.3 24 0.00071 14.3 4.2 46 58-103 27-74 (84)
25 >3byi_A RHO GTPase activating 34.8 25 0.00073 14.2 2.1 19 534-552 50-68 (73)
26 >3cxl_A N-chimerin; SH2, RHO-G 34.6 25 0.00073 14.2 2.4 17 536-552 53-69 (74)
27 >2osa_A N-chimaerin; RHO-GAP, 34.6 25 0.00073 14.2 2.4 17 536-552 53-69 (74)
28 >1tx4_A P50-rhogap; complex (G 33.0 24 0.00072 14.3 1.9 19 534-552 49-67 (71)
29 >1f7c_A Rhogap protein; GTPase 32.2 27 0.0008 14.0 2.4 18 535-552 90-107 (112)
30 >3iug_A RHO/CDC42/RAC GTPase-a 32.0 27 0.00081 14.0 2.2 18 535-552 51-68 (73)
31 >3eap_A RHO GTPase-activating 31.9 27 0.00081 13.9 2.4 19 534-552 72-90 (95)
32 >2qv2_A OCRL, inositol polypho 31.7 26 0.00077 14.1 1.8 19 534-552 100-118 (123)
33 >3kuq_A RHO GTPase-activating 31.5 28 0.00082 13.9 2.0 19 534-552 49-67 (72)
34 >1p6t_A Potential copper-trans 30.6 27 0.00079 14.0 1.7 39 136-188 21-60 (72)
35 >1qup_A Superoxide dismutase 1 29.9 26 0.00076 14.1 1.6 21 137-157 21-41 (73)
36 >3cwf_A Alkaline phosphatase s 29.5 30 0.00089 13.7 3.2 22 202-223 46-67 (122)
37 >2yys_A Proline iminopeptidase 29.2 30 0.0009 13.6 2.5 21 534-554 170-190 (199)
38 >1pbw_A Rhogap domain, phospha 28.9 31 0.00091 13.6 2.2 19 534-552 71-89 (93)
39 >2ee4_A RHO GTPase activating 28.7 31 0.00091 13.6 2.4 18 535-552 76-93 (98)
40 >1zvp_A Hypothetical protein V 28.7 31 0.00092 13.6 3.3 40 60-99 43-84 (88)
41 >1ow3_A RHO-GTPase-activating 28.3 31 0.00093 13.5 1.9 19 534-552 49-67 (71)
42 >2a3m_A COG3005: nitrate/TMAO 28.2 20 0.00058 14.9 0.7 28 21-48 2-29 (83)
43 >3fwt_A Macrophage migration i 28.1 32 0.00093 13.5 7.7 78 132-210 37-119 (125)
44 >1osd_A MERP, hypothetical pro 26.6 34 0.00099 13.3 2.2 43 136-192 18-62 (72)
45 >3bf7_A Esterase YBFF; thioest 26.4 34 0.001 13.3 2.5 19 534-552 168-186 (187)
46 >2j5l_A Apical membrane antige 26.4 16 0.00048 15.5 0.0 21 195-215 193-213 (581)
47 >2g9o_A Copper-transporting AT 26.3 26 0.00077 14.1 1.1 20 137-156 19-38 (90)
48 >3e4r_A Nitrate transport prot 25.8 35 0.001 13.3 3.4 25 530-554 139-163 (181)
49 >1aw0_A Menkes copper-transpor 25.7 35 0.001 13.2 1.6 39 137-189 19-58 (72)
50 >3jx9_A Putative phosphoheptos 25.5 35 0.001 13.2 2.8 34 44-77 57-91 (112)
51 >2aj0_A Probable cadmium-trans 25.4 34 0.001 13.3 1.5 19 138-156 20-38 (71)
52 >1mqs_A SLY1 protein, SLY1P; S 25.1 36 0.0011 13.2 4.1 30 38-73 11-40 (79)
53 >2gqw_A Ferredoxin reductase; 25.1 31 0.00092 13.6 1.3 70 9-78 15-89 (116)
54 >1yg0_A COP associated protein 24.7 36 0.0011 13.1 5.2 44 136-193 16-60 (66)
55 >2qif_A Copper chaperone COPZ; 24.4 37 0.0011 13.1 1.7 39 137-189 18-57 (69)
56 >1aog_A Trypanothione reductas 24.4 37 0.0011 13.1 1.6 59 20-78 11-76 (108)
57 >1mwy_A ZNTA; open-faced beta- 24.0 37 0.0011 13.0 1.8 20 137-156 19-38 (73)
58 >1cke_A CK, MSSA, protein (cyt 23.3 11 0.00031 16.7 -1.4 42 51-92 11-52 (84)
59 >3dwc_A TCMCP-1, metallocarbox 23.2 39 0.0011 12.9 3.4 38 378-416 3-40 (83)
60 >2aqj_A Tryptophan halogenase, 22.9 19 0.00057 14.9 -0.1 12 205-216 32-43 (273)
61 >2ovj_A Mgcracgap, RAC GTPase- 22.7 40 0.0012 12.9 2.4 16 537-552 68-83 (88)
62 >2opa_A Probable tautomerase Y 22.3 40 0.0012 12.8 4.5 36 175-210 3-41 (47)
63 >1pjr_A PCRA; DNA repair, DNA 22.2 41 0.0012 12.8 4.2 28 48-77 68-95 (275)
64 >3fk2_A Glucocorticoid recepto 22.1 41 0.0012 12.8 2.4 18 535-552 117-134 (137)
65 >3dxs_X Copper-transporting AT 21.6 42 0.0012 12.7 1.8 43 137-193 18-62 (74)
66 >2is6_A DNA helicase II; hydro 21.1 43 0.0013 12.7 3.0 28 48-77 67-94 (232)
67 >3etc_A AMP-binding protein; a 20.9 43 0.0013 12.6 8.3 76 137-217 13-89 (105)
68 >3ksy_A SOS-1, SON of sevenles 20.5 44 0.0013 12.6 2.0 17 540-556 54-70 (129)
69 >1uxy_A MURB, uridine diphosph 20.4 44 0.0013 12.6 3.3 37 52-88 19-55 (87)
70 >1ni5_A Putative cell cycle pr 20.2 44 0.0013 12.5 2.4 22 532-553 11-32 (83)
71 >1cpz_A Protein (COPZ); copper 20.2 45 0.0013 12.5 2.2 38 137-188 16-54 (68)
No 1
>>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} (A:69-171)
Probab=99.96 E-value=1e-29 Score=216.30 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=95.2
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC-HHHHHHH
Q ss_conf 530588842599999999999999999999960576314899998336665555555871599970687789-8899999
Q gi|254780695|r 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191 (563)
Q Consensus 113 l~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~-~~qv~~I 191 (563)
+|++ ++||+|+|+++++|+||||+||+|||++|+||++|||||++|++ ++.+|||||+|+++++.+ ++||.+|
T Consensus 2 lf~~-~~l~~T~~ee~~~~~~ale~eL~~ti~~i~gV~~ArV~i~~p~~-----~~~~~sASV~l~~~~g~~l~~qv~~I 75 (103)
T 1yj7_A 2 IFPP-SQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQI 75 (103)
T ss_dssp HCC-------CHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEC------------CEEEEEEEECTTCCCGGGHHHH
T ss_pred HHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-----CCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 8158-98768999999999999999999999816781378999957887-----78997428999618988889999999
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCEEEC
Q ss_conf 9999865401883526998289835003
Q gi|254780695|r 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 (563)
Q Consensus 192 ~~lVa~sV~gL~~e~VtVvD~~G~~L~~ 219 (563)
++|||+|||||++|||||+|++|++|++
T Consensus 76 ~~lVa~sV~gL~~enVtVvd~~g~~lsa 103 (103)
T 1yj7_A 76 KNLVKNSVDDLKLENISVVIKSSSGQDG 103 (103)
T ss_dssp HHHHHHHSTTCCGGGEEEEEEECC----
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 9999972699991125999635877888
No 2
>>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} (A:1-68)
Probab=97.79 E-value=4.5e-05 Score=52.44 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=51.7
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEECCC---CCEEEECHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 4503899989999999999977992999189---9779951899999999999769988776
Q gi|254780695|r 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSSSS 107 (563)
Q Consensus 49 ~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~---g~~I~Vp~~~~~~~r~~La~~glp~~~~ 107 (563)
+.||+||+..||++|++.|...||..+-.++ |-+|.|++++...|--.|...|||+...
T Consensus 3 ~eL~~gL~e~eANevla~L~~~gI~A~K~~~~~~~~~i~V~~~d~~~Av~iL~~~GLPr~~~ 64 (68)
T 1yj7_A 3 EQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKF 64 (68)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCSCCCC
T ss_pred CHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHCCCCCCC
T ss_conf 60006989999999999999879984974089984699976888999999999847888888
No 3
>>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} (A:)
Probab=96.74 E-value=0.0046 Score=39.01 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCC------------CCEEEECHHHHHHHHHHHHHCCCCCC
Q ss_conf 699824503899989999999999977992999189------------97799518999999999997699887
Q gi|254780695|r 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN------------GSSISVPSSMVGKARIHLAAQGLPSS 105 (563)
Q Consensus 44 ~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~------------g~~I~Vp~~~~~~~r~~La~~glp~~ 105 (563)
++..++.|+..-++-++.-+.+.|+.+||++-+.+. |..|+|+++++.+||-.|..+|++..
T Consensus 19 ~~gkM~el~rtnd~v~a~~a~~lLe~aGI~~fi~De~ms~l~Gsigi~p~Ri~V~e~D~~~Ar~iL~e~g~~~~ 92 (97)
T 2hfv_A 19 FQGHLRELLRTNDAVLLSAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLVHEDDLAGARRLLTDAGLAHE 92 (97)
T ss_dssp CCCSEEEEEEECCHHHHHHHHHHHHHTTCCEECCSCCCCSSSCCSSSSCEEEEEEGGGHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCC
T ss_conf 14236888734889999999999845899769851874053044355137899747589999999997697411
No 4
>>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 2wkf_A* (A:)
Probab=71.48 E-value=6.1 Score=18.28 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCCCHHHH----HHHHHHHHHHHHCCCC
Q ss_conf 99999999999999605763148999983-366655555558715999706877898899----9999999865401883
Q gi|254780695|r 130 TRVRALEGEIARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMIRAINPSVYKSA----EAIRHLVAAAVPNLDM 204 (563)
Q Consensus 130 ~~~ralegeL~rtI~~~~~V~~ArV~l~~-p~~~~f~~~~~~~sASV~l~~~~~l~~~qv----~~I~~lVa~sV~gL~~ 204 (563)
....++..++...+...-+.-..++...+ |....+...+..|.+-|.++..++++++|= +.|..+++. .-|+.+
T Consensus 14 ~~~~~l~~~~~~~l~~~l~kp~~~i~v~i~~~~~~~fgg~~~p~~~v~i~~~g~~~~e~k~~~~~~i~~~l~~-~lgi~~ 92 (125)
T 2wkb_A 14 DKAQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNSLLADKITKILSN-HLSVKP 92 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCTTCEEEEEECTTCEETTBCSSCEEEEEECC-----CTHHHHHHHHHHHHHH-HHCCCG
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCEEECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHH-HCCCCH
T ss_conf 6599999999999999979797889999925851796688997599999996077826689999999999998-719893
Q ss_pred CCEEEEE
Q ss_conf 5269982
Q gi|254780695|r 205 GDVTVLD 211 (563)
Q Consensus 205 e~VtVvD 211 (563)
++|-|.=
T Consensus 93 ~~i~I~~ 99 (125)
T 2wkb_A 93 RRVYIEF 99 (125)
T ss_dssp GGEEEEE
T ss_pred HHEEEEE
T ss_conf 3499999
No 5
>>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} (A:1-122)
Probab=66.94 E-value=6 Score=18.31 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 1006899999999886999899999999863
Q gi|254780695|r 522 YVSKQSDLRLLHMIEINEERFAKILRKWARS 552 (563)
Q Consensus 522 ~~~~~~~~~i~~lv~e~Pe~vA~vLR~WL~e 552 (563)
.+..+..+++++|.++||..|+..||..|..
T Consensus 12 eE~~d~~~eVe~llr~d~~~v~~eIK~Fl~~ 42 (122)
T 2h8r_A 12 EEAAEQRAEVDRMLSEDPWRAAKMIKGYMQQ 42 (122)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 8542212115888755899999999999988
No 6
>>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii DSM2661} PDB: 2eky_A (A:)
Probab=62.86 E-value=9 Score=17.17 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHH---HHHHCCCCCC
Q ss_conf 899999999999779929991899779951899999999---9997699887
Q gi|254780695|r 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSS 105 (563)
Q Consensus 57 ~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~r~---~La~~glp~~ 105 (563)
..-.+++++.|++.|++|++.+-|++|.-+-+++.++-- ....+|-+.-
T Consensus 23 s~~Va~~i~~i~~sgl~y~~~pm~T~IEG~~dev~~~i~~~~e~~~~g~~RV 74 (100)
T 2epi_A 23 SKYVKKAIEVFKKYDLKVETNAMGTVLEGDLDEILKAFKEAHSTVLNDVDRV 74 (100)
T ss_dssp HHHHHHHHHHHTTSSCEEEEETTEEEEEEEHHHHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999999997599726079815773789999999999999997799879
No 7
>>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} (A:1-85)
Probab=55.89 E-value=12 Score=16.39 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 1006899999999886999899999999863
Q gi|254780695|r 522 YVSKQSDLRLLHMIEINEERFAKILRKWARS 552 (563)
Q Consensus 522 ~~~~~~~~~i~~lv~e~Pe~vA~vLR~WL~e 552 (563)
.+..+...++++|.++||..++..||..|..
T Consensus 11 eE~~~~~~~Veellr~d~~~v~~eIK~Fl~~ 41 (85)
T 1ic8_A 11 EEAAHQKAVVETLLQEDPWRVAKMVKSYLQQ 41 (85)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8888899999999860709999999999987
No 8
>>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A {Pseudomonas pavonaceae} (A:)
Probab=54.47 E-value=12 Score=16.24 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEE--EEEEE-CCCCCCC-----CCCCCCCEEEEEECCCCCCHHHHHH----HHHHHHH
Q ss_conf 999999999999996057631489--99983-3666555-----5555871599970687789889999----9999986
Q gi|254780695|r 130 TRVRALEGEIARTIQSISGIVAAR--VHIVM-PDMGSFR-----KIGARPTASVMIRAINPSVYKSAEA----IRHLVAA 197 (563)
Q Consensus 130 ~~~ralegeL~rtI~~~~~V~~Ar--V~l~~-p~~~~f~-----~~~~~~sASV~l~~~~~l~~~qv~~----I~~lVa~ 197 (563)
.++++|-.+|.+.+...-++.... |++.. |..+.+. .+....-.-|.+...++++++|-+. |..+++
T Consensus 15 e~k~~l~~~it~~l~~~~g~p~~~v~v~i~e~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~e~k~~l~~~i~~~l~- 93 (131)
T 2aal_A 15 AQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVISRPRSEEQKVCFYKLLTGALE- 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECCTTSCCCCCTTCEEEEEEESCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999999978994606999998170444764643466678764999998689999999999999999999-
Q ss_pred HHHCCCCCCEEEE
Q ss_conf 5401883526998
Q gi|254780695|r 198 AVPNLDMGDVTVL 210 (563)
Q Consensus 198 sV~gL~~e~VtVv 210 (563)
.+-|..+++|.|+
T Consensus 94 ~~~gi~~~~v~v~ 106 (131)
T 2aal_A 94 RDCGISPDDVIVA 106 (131)
T ss_dssp HHHCCCGGGEEEE
T ss_pred HHHCCCCCCEEEE
T ss_conf 9749792709999
No 9
>>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structural genomics, JCSG, PSI, protein structure initiative; HET: UNL; 1.80A {Thermotoga maritima} (A:)
Probab=53.33 E-value=13 Score=16.12 Aligned_cols=49 Identities=6% Similarity=0.012 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHH---HHHHCCCCCC
Q ss_conf 899999999999779929991899779951899999999---9997699887
Q gi|254780695|r 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSS 105 (563)
Q Consensus 57 ~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~r~---~La~~glp~~ 105 (563)
..-.++++..|++.|++|++.+-|++|--+-+++-++-- .....|.+.-
T Consensus 32 s~~Va~~i~~i~~sGl~y~~~pmgT~IEG~~dev~~~vk~~he~~~~g~~RV 83 (106)
T 1vk8_A 32 HEVIDRAIEKISSWGXKYEVGPSNTTVEGEFEEIXDRVKELARYLEQFAKRF 83 (106)
T ss_dssp HHHHHHHHHHHHTTCSCEEECSSCEEEEECHHHHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 7999999999997499579779844898789999999999999998599869
No 10
>>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} (A:)
Probab=52.89 E-value=13 Score=16.08 Aligned_cols=48 Identities=6% Similarity=0.071 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHH---HHHHCCCCCC
Q ss_conf 99999999999779929991899779951899999999---9997699887
Q gi|254780695|r 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSS 105 (563)
Q Consensus 58 ~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~r~---~La~~glp~~ 105 (563)
...++++..|++.|++|++.+-|++|.-+=+++-++-- ....+|.+.-
T Consensus 20 ~~Va~vi~~i~~sGl~y~~~pm~T~IEG~~dev~~vik~~~~~~~~g~~RV 70 (104)
T 2ibo_A 20 AVIDQVIAYLQTQEVTXVVTPFETVLEGEFDELXRILKEALEVAGQEADNV 70 (104)
T ss_dssp HHHHHHHHHHHHSSSEEEECSSCEEEEEEHHHHHHHHHHHHHHHHTSCSCE
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCEECCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 999999999985799489889876304899999999999999998799879
No 11
>>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} (A:)
Probab=51.47 E-value=14 Score=15.93 Aligned_cols=57 Identities=5% Similarity=0.071 Sum_probs=42.0
Q ss_pred EECCCCC-HHHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHH----HHHHHHCCCCCCC
Q ss_conf 5038999-8999999999997799299918997799518999999----9999976998877
Q gi|254780695|r 50 NLYVKLE-VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA----RIHLAAQGLPSSS 106 (563)
Q Consensus 50 ~L~~~l~-~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~----r~~La~~glp~~~ 106 (563)
|+=.+-+ ..-..+++..|++.|++|++.+-|++|.-+-+++-++ .-.+...|.|.-.
T Consensus 16 P~g~~~svs~~V~~~i~~i~~sGl~y~v~pmgT~IEGe~dev~~~vk~~~e~~~~~G~~RV~ 77 (109)
T 1yqh_A 16 PQAKTKDVYSVVDKAIEVVQQSGVRYEVGAXETTLEGELDVLLDVVKRAQQACVDAGAEEVI 77 (109)
T ss_dssp EECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 46899857999999999999749965866982579768999999999999999976998699
No 12
>>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} (A:)
Probab=50.79 E-value=14 Score=15.86 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=23.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH---HCCCCCCEEEE
Q ss_conf 9970687789889999999998654---01883526998
Q gi|254780695|r 175 VMIRAINPSVYKSAEAIRHLVAAAV---PNLDMGDVTVL 210 (563)
Q Consensus 175 V~l~~~~~l~~~qv~~I~~lVa~sV---~gL~~e~VtVv 210 (563)
|.+++.+++|.+|-+.+..-|..++ -|..+++|.|+
T Consensus 3 v~I~~~~grs~eqK~~L~~~it~~~~~~lg~~~~~v~V~ 41 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVL 41 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999981898999999999999999999849590249999
No 13
>>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} (A:1-124)
Probab=50.60 E-value=14 Score=15.84 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 425999999999999999999999605763148999983-3666555555587159997068778988999999999865
Q gi|254780695|r 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 (563)
Q Consensus 120 ~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~-p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~s 198 (563)
...++.. ...+..++.+.|..+-+--..+|.+.+ +....+......|.|-|.|+.-+++++++-+.+...+..-
T Consensus 30 v~~~~~~-----~~~f~~~ls~~ia~ilgKpe~~imV~i~~~~~m~fgGs~eP~a~v~i~sig~~~~~~n~~~s~~i~~~ 104 (124)
T 3fwu_A 30 TPLDHHK-----RENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAA 104 (124)
T ss_dssp SCCCHHH-----HHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCHHH-----HHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9898789-----99999999999999869997898999817864795688997379999996189988999999999999
Q ss_pred H---HCCCCCCEEEE
Q ss_conf 4---01883526998
Q gi|254780695|r 199 V---PNLDMGDVTVL 210 (563)
Q Consensus 199 V---~gL~~e~VtVv 210 (563)
+ -|+.+++|-|.
T Consensus 105 l~~~LgI~~dRiyI~ 119 (124)
T 3fwu_A 105 ITKECGIVADRIFVL 119 (124)
T ss_dssp HHHHHCCCGGGEEEE
T ss_pred HHHHCCCCCCEEEEE
T ss_conf 998729994429999
No 14
>>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} (A:)
Probab=50.31 E-value=14 Score=15.81 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEE--EEEEEE--CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---HHC
Q ss_conf 999999999999999605763148--999983--3666555555587159997068778988999999999865---401
Q gi|254780695|r 129 ITRVRALEGEIARTIQSISGIVAA--RVHIVM--PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA---VPN 201 (563)
Q Consensus 129 ~~~~ralegeL~rtI~~~~~V~~A--rV~l~~--p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~s---V~g 201 (563)
...++++..++.+.+..+-++-.. .|++.- |..-.|..+...+.+-|.++..++++.+|-+.+..-+... .-|
T Consensus 12 ~~~k~~l~~~i~~~l~~~~~kp~~~~~v~i~~~~~~~~~~~~~~~~~~~~v~i~~~~g~~~e~k~~l~~~i~~~l~~~lg 91 (128)
T 1mww_A 12 APRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLG 91 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 49999999999999999988494135899997181655746888898799999966899999999999999999998819
Q ss_pred CCCCCEEEE
Q ss_conf 883526998
Q gi|254780695|r 202 LDMGDVTVL 210 (563)
Q Consensus 202 L~~e~VtVv 210 (563)
..+++|-|+
T Consensus 92 i~~~~v~i~ 100 (128)
T 1mww_A 92 IRAHDVEIT 100 (128)
T ss_dssp CCGGGEEEE
T ss_pred CCHHHEEEE
T ss_conf 695259999
No 15
>>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} (A:1-104)
Probab=50.23 E-value=14 Score=15.81 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH---CCCCCCEEE
Q ss_conf 9999999999605763148999983-366655555558715999706877898899999999986540---188352699
Q gi|254780695|r 134 ALEGEIARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP---NLDMGDVTV 209 (563)
Q Consensus 134 alegeL~rtI~~~~~V~~ArV~l~~-p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~sV~---gL~~e~VtV 209 (563)
.+..+|.+.|..+-|=-..+|.+.+ |....+......|.|-|-|+.-+++++++-+.+...+..-+. |+.+++|-|
T Consensus 18 ~~~~~~~~~ia~~lgKpe~~imv~i~~~~~m~fgGs~~P~a~~~i~sig~~~~~~n~~~s~~i~~~l~~~LgI~~dRiyI 97 (104)
T 1uiz_A 18 TLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYI 97 (104)
T ss_dssp THHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99999999999887999899999972896179668899689999999768896787999999999999972989232999
Q ss_pred E
Q ss_conf 8
Q gi|254780695|r 210 L 210 (563)
Q Consensus 210 v 210 (563)
.
T Consensus 98 ~ 98 (104)
T 1uiz_A 98 N 98 (104)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 16
>>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 intergenic region; hypothetical protein, structural genomics, PSI; 1.80A {Saccharomyces cerevisiae} (A:)
Probab=48.54 E-value=15 Score=15.64 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHH----HHHHHHHCCCCCCCC
Q ss_conf 899999999999779929991899779951899999----999999769988776
Q gi|254780695|r 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK----ARIHLAAQGLPSSSS 107 (563)
Q Consensus 57 ~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~----~r~~La~~glp~~~~ 107 (563)
..-.+++++.|++.|++|++.+-|++|--+-+++.+ +.-.+...|.|.--+
T Consensus 23 s~~Va~~i~vi~~sGl~y~v~pmgT~IEG~~dev~~~v~~~~e~~~~~G~~RV~t 77 (104)
T 1lxj_A 23 SDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVXGLIGEIHEYGHEKGYVRVHT 77 (104)
T ss_dssp HHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999997599757669834797679999999999999999769985999
No 17
>>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), structural genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} (A:46-123)
Probab=46.03 E-value=6.7 Score=18.01 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999988699989999999986378635421
Q gi|254780695|r 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 (563)
Q Consensus 526 ~~~~~i~~lv~e~Pe~vA~vLR~WL~ee~~~~~~~ 560 (563)
+.+..+..+-++.++.++..|+.||.+|...--.|
T Consensus 27 ~v~~~l~~~~~~~~~~~~~~l~~~i~~DrK~t~LK 61 (78)
T 2g80_A 27 PVSNILSQFHIDNKEQLQAHILELVAKDVKDPILK 61 (78)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 78999999876258999999998753010114699
No 18
>>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* (A:1-138,A:206-271)
Probab=44.10 E-value=18 Score=15.19 Aligned_cols=20 Identities=0% Similarity=0.104 Sum_probs=17.7
Q ss_pred HHHHCHHHHHHHHHHHHHHH
Q ss_conf 98869998999999998637
Q gi|254780695|r 534 MIEINEERFAKILRKWARSE 553 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~ee 553 (563)
.-.++|++++++|+.||++.
T Consensus 184 ~~~e~p~~~~~~i~~fl~~~ 203 (204)
T 1wom_A 184 PHMSHPDETIQLIGDYLKAH 203 (204)
T ss_dssp HHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHH
T ss_conf 58969999999999999975
No 19
>>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:)
Probab=43.42 E-value=18 Score=15.12 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEEEC-HHHHHH----HHHHHHHCCCCCCCC
Q ss_conf 899999999999779929991899779951-899999----999999769988776
Q gi|254780695|r 57 VSDVNRISVALSEANIDFRISDNGSSISVP-SSMVGK----ARIHLAAQGLPSSSS 107 (563)
Q Consensus 57 ~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp-~~~~~~----~r~~La~~glp~~~~ 107 (563)
..-.++++..|++.|++|++.+-|++|--+ =+++.+ +...+...|.|.-..
T Consensus 19 s~~Va~vi~~i~~sgl~y~~~pmgT~iEge~~dev~~~ik~~he~~~~~G~~RV~t 74 (99)
T 1lxn_A 19 SSYVAAAVEALKKLNVRYEISGXGTLLEAEDLDELXEAVKAAHEAVLQAGSDRVYT 74 (99)
T ss_dssp HHHHHHHHHHHTTSSCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999975996674588226506889999999999999999779986999
No 20
>>1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} (A:1-123,A:197-264)
Probab=41.53 E-value=19 Score=14.93 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
.--|+|+++++.|+.||++
T Consensus 170 ~~~e~p~~~~~~i~~fl~~ 188 (191)
T 1r3d_A 170 VHHEQPQAFAKIVQAXIHS 188 (191)
T ss_dssp HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHH
T ss_conf 4897999999999999986
No 21
>>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} (A:1-103)
Probab=39.81 E-value=21 Score=14.76 Aligned_cols=76 Identities=8% Similarity=-0.029 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---HCCCCCCEEEE
Q ss_conf 999999999605763148999983-36665555555871599970687789889999999998654---01883526998
Q gi|254780695|r 135 LEGEIARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAV---PNLDMGDVTVL 210 (563)
Q Consensus 135 legeL~rtI~~~~~V~~ArV~l~~-p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~sV---~gL~~e~VtVv 210 (563)
+..+|.+.|..+-|=-..+|.+.+ |....+......|.|-|-|+.-+++++++-..+...+..-+ =|+.+++|-|.
T Consensus 18 ~~~~ls~~ia~~lgKpe~~imv~i~~~~~m~fgGs~~P~a~~~i~siG~~~~~~n~~~s~~i~~~l~~~LgI~~driyI~ 97 (103)
T 1hfo_A 18 FLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIH 97 (103)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred HHHHHHHHHHHHHCCCHHHEEEEEECCCCEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99999999998879898999999817950897788996799999992389988999999999999999709894429999
No 22
>>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str} (A:37-156)
Probab=35.88 E-value=23 Score=14.48 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=22.4
Q ss_pred EEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6998289835003676533324799999999999999999887754
Q gi|254780695|r 207 VTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 (563)
Q Consensus 207 VtVvD~~G~~L~~~~~~~~~~~~~~~~~~~~E~~~~~kI~~~L~~i 252 (563)
-.++|..|++|+..-+.+..-. ++.+|...+......|..+
T Consensus 76 LvimD~kgRiLTaslSPssiiH-----k~~ie~~v~~E~~eAL~ri 116 (120)
T 3brc_A 76 LVIXDSRGRLLSAAXSPPHVIH-----SXEVREAVRSEXTHALERI 116 (120)
T ss_dssp EEEEETTSCEEEEEEECCTTTS-----CCCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCEEEECCCCHHHHH-----HCCHHHHHHHHHHHHHHHH
T ss_conf 9998388768762279115431-----2229999999999999984
No 23
>>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} (A:)
Probab=35.67 E-value=24 Score=14.34 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 9899999999864312566113876899850
Q gi|254780695|r 381 IDSYLAEINKIVSAATGINSRRGDTITITSM 411 (563)
Q Consensus 381 ~~eel~~I~~lV~~AiG~d~~RGD~VtV~~~ 411 (563)
...+++++++.....+.-=-+||+.+....-
T Consensus 38 i~~~v~~v~~iM~~Ni~kileRge~L~~L~~ 68 (119)
T 2kog_A 38 TQAQVDEVVDIMRVNVDKVLERDQKLSELDD 68 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCCCSSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999982246999999
No 24
>>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens str} (A:1-11,A:62-134)
Probab=35.28 E-value=24 Score=14.30 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHCCCCEEECC--CCCEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 999999999997799299918--9977995189999999999976998
Q gi|254780695|r 58 SDVNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLP 103 (563)
Q Consensus 58 ~d~~~i~~~L~~~gI~y~~~~--~g~~I~Vp~~~~~~~r~~La~~glp 103 (563)
.=++.+...|.++||+--+-+ +.-.|+||+++..+|.-.|...+.-
T Consensus 27 Gi~a~i~~aLA~agIsV~~ISs~~sD~ilV~~~~~~~Ai~aL~~~~~~ 74 (84)
T 1zhv_A 27 GIVLSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLANAGHS 74 (84)
T ss_dssp CHHHHHHHHHHTTTCCCEEEECSSCEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHCCCE
T ss_conf 139999899987799669985212648998777899999999988999
No 25
>>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, SGC, signaling protein; 2.25A {Homo sapiens} (A:35-107)
Probab=34.78 E-value=25 Score=14.25 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=15.8
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
+-..+|-.+|.+||.||+|
T Consensus 50 ~~~~d~~~vA~~lK~flre 68 (73)
T 3byi_A 50 SQWEDIHVVTGALKMFFRE 68 (73)
T ss_dssp GGGCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 3202489999999999984
No 26
>>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, alternative splicing, GTPase activation, metal-binding, phorbol-ester binding; 2.60A {Homo sapiens} PDB: 1xa6_A (A:285-358)
Probab=34.59 E-value=25 Score=14.23 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.5
Q ss_pred HHCHHHHHHHHHHHHHH
Q ss_conf 86999899999999863
Q gi|254780695|r 536 EINEERFAKILRKWARS 552 (563)
Q Consensus 536 ~e~Pe~vA~vLR~WL~e 552 (563)
..+|-.+|.+||.|+++
T Consensus 53 ~~~~~~va~lLK~flre 69 (74)
T 3cxl_A 53 YEDINIITGALKLYFRD 69 (74)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 46778999999999984
No 27
>>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} (A:24-97)
Probab=34.59 E-value=25 Score=14.23 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.5
Q ss_pred HHCHHHHHHHHHHHHHH
Q ss_conf 86999899999999863
Q gi|254780695|r 536 EINEERFAKILRKWARS 552 (563)
Q Consensus 536 ~e~Pe~vA~vLR~WL~e 552 (563)
..+|-.+|.+||.|+++
T Consensus 53 ~~~~~~va~lLK~flre 69 (74)
T 2osa_A 53 YEDINIITGALKLYFRD 69 (74)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 43628999999999976
No 28
>>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} (A:25-95)
Probab=33.02 E-value=24 Score=14.28 Aligned_cols=19 Identities=21% Similarity=-0.003 Sum_probs=15.9
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
+-..+|..+|.+||.||+|
T Consensus 49 ~~~~~v~~va~~lK~fLre 67 (71)
T 1tx4_A 49 DQYNALHLPAVILKTFLRE 67 (71)
T ss_dssp GGSSCTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 4332088899999999970
No 29
>>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} (A:1-112)
Probab=32.18 E-value=27 Score=13.97 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHCHHHHHHHHHHHHHH
Q ss_conf 886999899999999863
Q gi|254780695|r 535 IEINEERFAKILRKWARS 552 (563)
Q Consensus 535 v~e~Pe~vA~vLR~WL~e 552 (563)
...+|-.+|.+||.|+++
T Consensus 90 ~~~d~~~va~llK~flre 107 (112)
T 1f7c_A 90 AEWEIKTITSALKTYLRM 107 (112)
T ss_dssp TTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 446798999999999984
No 30
>>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} (A:37-109)
Probab=32.00 E-value=27 Score=13.95 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=14.9
Q ss_pred HHHCHHHHHHHHHHHHHH
Q ss_conf 886999899999999863
Q gi|254780695|r 535 IEINEERFAKILRKWARS 552 (563)
Q Consensus 535 v~e~Pe~vA~vLR~WL~e 552 (563)
-..++-.+|.+||.|+++
T Consensus 51 ~~~~v~~va~~LK~flr~ 68 (73)
T 3iug_A 51 YVQDIHSVGSLCKLYFRE 68 (73)
T ss_dssp TTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 357788899999999985
No 31
>>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} (A:56-150)
Probab=31.88 E-value=27 Score=13.94 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=16.2
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
+-..+|-.+|.+||.||++
T Consensus 72 ~~~~~~~~va~~LK~fLr~ 90 (95)
T 3eap_A 72 LSSAPPCDIAGLLKQFFRE 90 (95)
T ss_dssp --CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6457830489999999985
No 32
>>2qv2_A OCRL, inositol polyphosphate 5-phosphatase OCRL-1; endocytosis, clathrin, APPL1, phosphoinositide, ASH, rhogap, hydrolase; 2.40A {Homo sapiens} (A:121-243)
Probab=31.74 E-value=26 Score=14.10 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=16.0
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
+-+.+|..+|.+||.||++
T Consensus 100 ~~~~~~~~va~~LK~flre 118 (123)
T 2qv2_A 100 TIPGSNHSVAEALLIFLEA 118 (123)
T ss_dssp SCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 7788888999999999985
No 33
>>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} (A:35-106)
Probab=31.49 E-value=28 Score=13.90 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
+-..+|..+|.+||.||++
T Consensus 49 ~~~~~~~~va~~LK~flr~ 67 (72)
T 3kuq_A 49 YEGQSAYDVADMLKQYFRD 67 (72)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 5438898999999999996
No 34
>>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} (A:1-72)
Probab=30.56 E-value=27 Score=14.01 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCHHHH
Q ss_conf 99999999605763148999983366655555558715999706877-898899
Q gi|254780695|r 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSA 188 (563)
Q Consensus 136 egeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~-l~~~qv 188 (563)
...+++.|..++||.+++|.+. +-.+.++..+. .+.+++
T Consensus 21 ~~~ie~~l~~~~GV~~v~v~~~--------------~~~~~v~~d~~~~~~~~i 60 (72)
T 1p6t_A 21 AARIEKGLKRMPGVTDANVNLA--------------TETVNVIYDPAETGTAAI 60 (72)
T ss_dssp HHHHHHHHTTSSSEEEEEEEGG--------------GTEEEEEECTTTSCHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEECC--------------CCCEEEEECCCCCCHHHH
T ss_conf 9999999865999389999911--------------694205636662468888
No 35
>>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} (A:1-73)
Probab=29.88 E-value=26 Score=14.11 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCCCCEEEEEEE
Q ss_conf 999999960576314899998
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHIV 157 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l~ 157 (563)
..+++.|..++||+++.|++.
T Consensus 21 ~~Ie~~l~~~~GV~~v~V~~~ 41 (73)
T 1qup_A 21 NDIKACLKNVPGINSLNFDIE 41 (73)
T ss_dssp HHHHHHHTTCTTEEEEEEETT
T ss_pred HHHHHHHHCCCCEEEEEEECC
T ss_conf 999999866999069999878
No 36
>>3cwf_A Alkaline phosphatase synthesis sensor protein PHOR; PAS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 2.20A {Bacillus subtilis subsp} (A:)
Probab=29.52 E-value=30 Score=13.68 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.5
Q ss_pred CCCCCEEEEECCCCEEECCCCC
Q ss_conf 8835269982898350036765
Q gi|254780695|r 202 LDMGDVTVLDSTGKLLTANEME 223 (563)
Q Consensus 202 L~~e~VtVvD~~G~~L~~~~~~ 223 (563)
..--.|+|+|.+|++|.+...+
T Consensus 46 ~~~~rItiid~~G~Vi~DS~~~ 67 (122)
T 3cwf_A 46 ALDVSASVIDTDGKVLYGSNGR 67 (122)
T ss_dssp HHTCEEEEEETTSCEEEETTSS
T ss_pred CCCCEEEEECCCCCEEEECCCC
T ss_conf 4464068971788688714996
No 37
>>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus HB8} (A:1-127,A:215-286)
Probab=29.19 E-value=30 Score=13.64 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=17.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHH
Q ss_conf 988699989999999986378
Q gi|254780695|r 534 MIEINEERFAKILRKWARSEI 554 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~ee~ 554 (563)
.--|+||+++..|+.||++-.
T Consensus 170 ~~~e~P~~~~~~i~~fl~~~~ 190 (199)
T 2yys_A 170 LWIDAPEAFEEAFKEALAALV 190 (199)
T ss_dssp HHHHCHHHHHHHHHHHHHTTC
T ss_pred HHHHCHHHHHHHHHHHHHHCC
T ss_conf 388599999999999997447
No 38
>>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} (A:1-93)
Probab=28.86 E-value=31 Score=13.61 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=16.8
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
+-..+|..||.+||.||++
T Consensus 71 ~~~~~~~~va~~LK~flr~ 89 (93)
T 1pbw_A 71 LEMIDVHVLADAFKRYLLD 89 (93)
T ss_dssp GGGBCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 4338888999999999980
No 39
>>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A (A:1-98)
Probab=28.73 E-value=31 Score=13.59 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=14.7
Q ss_pred HHHCHHHHHHHHHHHHHH
Q ss_conf 886999899999999863
Q gi|254780695|r 535 IEINEERFAKILRKWARS 552 (563)
Q Consensus 535 v~e~Pe~vA~vLR~WL~e 552 (563)
-..++-.+|.+||.|+++
T Consensus 76 ~~~~~~~va~~LK~ylre 93 (98)
T 2ee4_A 76 MEVTVNAVAGALKAFFAD 93 (98)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 446789999999999844
No 40
>>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Vibrio cholerae} (A:1-22,A:68-133)
Probab=28.65 E-value=31 Score=13.58 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCEEECC--CCCEEEECHHHHHHHHHHHHH
Q ss_conf 9999999997799299918--997799518999999999997
Q gi|254780695|r 60 VNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAA 99 (563)
Q Consensus 60 ~~~i~~~L~~~gI~y~~~~--~g~~I~Vp~~~~~~~r~~La~ 99 (563)
.++|.+.|.++||+--.-. +..-|+||+++.++|.-.|..
T Consensus 43 lAaIs~~LA~agIsifviSTy~tDhILVp~~~l~~Ai~~L~~ 84 (88)
T 1zvp_A 43 TAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGE 84 (88)
T ss_dssp HHHHHHHHHHTTCCCEEEECSSCEEEEEEGGGHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHH
T ss_conf 999989998769983898624064799713258999999999
No 41
>>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} (A:61-131)
Probab=28.30 E-value=31 Score=13.54 Aligned_cols=19 Identities=21% Similarity=0.018 Sum_probs=15.8
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
+-..+|-.+|.+||.|+++
T Consensus 49 ~~~~~~~~va~~LK~flr~ 67 (71)
T 1ow3_A 49 DQYNELHLPAVILKTFLRE 67 (71)
T ss_dssp GGSSCTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 4466488999999999986
No 42
>>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* (A:1-83)
Probab=28.24 E-value=20 Score=14.91 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8899999999999999999998469982
Q gi|254780695|r 21 RILILASVILVPIMLFMAARFFVNSPHY 48 (563)
Q Consensus 21 ~ki~~~~~~~~~i~~~~~~~~~~~~p~y 48 (563)
||.+++++++++++++.+..+|...|.+
T Consensus 2 kk~li~~~~~~l~~~~~~~~~~~~~p~~ 29 (83)
T 2a3m_A 2 RKSLFAVMVLALVAAFALPVIAAEAPAD 29 (83)
T ss_dssp ----------------------CCCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 0689999999999999856643028753
No 43
>>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major} (A:1-125)
Probab=28.13 E-value=32 Score=13.52 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCCCHHH----HHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999605763148999983-36665555555871599970687789889----9999999986540188352
Q gi|254780695|r 132 VRALEGEIARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGD 206 (563)
Q Consensus 132 ~ralegeL~rtI~~~~~V~~ArV~l~~-p~~~~f~~~~~~~sASV~l~~~~~l~~~q----v~~I~~lVa~sV~gL~~e~ 206 (563)
..++..+|.+.|..+-+--..+|.+.+ +....+.-....|.|-|.|+.-+++++++ ...|..++.. .-|+.+++
T Consensus 37 ~~~f~~~ls~~ia~~lgKpe~~ImV~v~~~~~m~fgGs~eP~a~v~i~sig~~~~~~n~~~s~~i~~~l~~-~LgI~~dR 115 (125)
T 3fwt_A 37 RANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSKPKMMTPRIAAAITK-ECGIPAER 115 (125)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHH-HHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHH-HCCCCCCE
T ss_conf 99999999999999878885579999807951796577996799999995289989999999999999999-83989550
Q ss_pred EEEE
Q ss_conf 6998
Q gi|254780695|r 207 VTVL 210 (563)
Q Consensus 207 VtVv 210 (563)
|-|.
T Consensus 116 iyI~ 119 (125)
T 3fwt_A 116 IYVF 119 (125)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 8999
No 44
>>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} (A:)
Probab=26.58 E-value=34 Score=13.34 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCHHHH-HHHH
Q ss_conf 99999999605763148999983366655555558715999706877-898899-9999
Q gi|254780695|r 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSA-EAIR 192 (563)
Q Consensus 136 egeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~-l~~~qv-~~I~ 192 (563)
..-+++.|..++||++++|.+. +-.|.+++.++ .+++++ +.|.
T Consensus 18 ~~~Ie~~l~~~~GV~~~~v~~~--------------~~~v~v~~d~~~~~~~~i~~~i~ 62 (72)
T 1osd_A 18 PITVKKAISKVEGVSKVDVTFE--------------TRQAVVTFDDAKTSVQKLTKATA 62 (72)
T ss_dssp HHHHHHHHHTSTTEEEEEEETT--------------TTEEEEEEETTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECC--------------CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 9999999974999689999867--------------99999998999999999999999
No 45
>>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A (A:1-119,A:188-255)
Probab=26.43 E-value=34 Score=13.33 Aligned_cols=19 Identities=5% Similarity=0.244 Sum_probs=17.0
Q ss_pred HHHHCHHHHHHHHHHHHHH
Q ss_conf 9886999899999999863
Q gi|254780695|r 534 MIEINEERFAKILRKWARS 552 (563)
Q Consensus 534 lv~e~Pe~vA~vLR~WL~e 552 (563)
.--|+||++.++++.||++
T Consensus 168 ~~~e~p~~~~~~i~~Fl~~ 186 (187)
T 3bf7_A 168 VHAEKPDAVLRAIRRYLND 186 (187)
T ss_dssp HHHHCHHHHHHHHHHHHHT
T ss_pred HHHHCHHHHHHHHHHHHHH
T ss_conf 1886999999999999972
No 46
>>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} (A:)
Probab=26.37 E-value=16 Score=15.48 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=7.4
Q ss_pred HHHHHHCCCCCCEEEEECCCC
Q ss_conf 986540188352699828983
Q gi|254780695|r 195 VAAAVPNLDMGDVTVLDSTGK 215 (563)
Q Consensus 195 Va~sV~gL~~e~VtVvD~~G~ 215 (563)
|.++-.+-.--+=.|-|..-+
T Consensus 193 v~~~~~ns~YR~PaVYD~ktk 213 (581)
T 2j5l_A 193 NPDNDKNSNYKYPAVYDYNDK 213 (581)
T ss_dssp ---------------------
T ss_pred CCCCCCCCCCCCCEEECCCCC
T ss_conf 768777642468614668898
No 47
>>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A (A:)
Probab=26.25 E-value=26 Score=14.07 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=13.2
Q ss_pred HHHHHHHHHCCCCCEEEEEE
Q ss_conf 99999996057631489999
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHI 156 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l 156 (563)
.-+++.|..++||.+++|++
T Consensus 19 ~~Ie~~l~~~~gV~~v~vn~ 38 (90)
T 2g9o_A 19 SNIESTLSALQYVSSIVVSL 38 (90)
T ss_dssp HHHHHHHTTCTTEEEEEEET
T ss_pred HHHHHHHHCCCCCEEEEEEC
T ss_conf 99999975478703999999
No 48
>>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:1-109,A:208-279)
Probab=25.84 E-value=35 Score=13.26 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 9999988699989999999986378
Q gi|254780695|r 530 RLLHMIEINEERFAKILRKWARSEI 554 (563)
Q Consensus 530 ~i~~lv~e~Pe~vA~vLR~WL~ee~ 554 (563)
+..+++.+||+++++++..++.-+.
T Consensus 139 ~a~~~~~~~~~e~~~~~a~~~~~~~ 163 (181)
T 3e4r_A 139 QADGLLERDRAGSIKTLAQVSGLPP 163 (181)
T ss_dssp HHHTHHHHTHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCH
T ss_conf 9999999799999999999989099
No 49
>>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} (A:)
Probab=25.70 E-value=35 Score=13.24 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCHHHHH
Q ss_conf 9999999605763148999983366655555558715999706877-8988999
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAE 189 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~-l~~~qv~ 189 (563)
.-+++.|..++||++++|++. +-.|.++..++ .+++++.
T Consensus 19 ~~Ie~~l~~~~GV~~v~v~~~--------------~~~v~v~~d~~~~~~~~i~ 58 (72)
T 1aw0_A 19 QSIEGVISKKPGVKSIRVSLA--------------NSNGTVEYDPLLTSPETLR 58 (72)
T ss_dssp HHHHHHHHTSTTCCCEEEETT--------------TTEEEEEECTTTCCHHHHH
T ss_pred HHHHHHHHCCCCCEEEEEECC--------------CCEEEEEECCCCCCHHHHH
T ss_conf 999998726899679999888--------------9999999999999999999
No 50
>>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15} (A:20-131)
Probab=25.50 E-value=35 Score=13.22 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=23.6
Q ss_pred CCCCCEEECCC-CCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 69982450389-99899999999999779929991
Q gi|254780695|r 44 NSPHYDNLYVK-LEVSDVNRISVALSEANIDFRIS 77 (563)
Q Consensus 44 ~~p~y~~L~~~-l~~~d~~~i~~~L~~~gI~y~~~ 77 (563)
+..+-+.||+- -+.+++.++..+|.+.||++-+.
T Consensus 57 t~tDRVLlfs~fs~dee~~~~ak~L~e~gi~~v~v 91 (112)
T 3jx9_A 57 HAVDRVLIFTPDTERSDLLASLARYDAWHTPYSII 91 (112)
T ss_dssp CTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 75687999759976389999999963687659996
No 51
>>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A (A:)
Probab=25.37 E-value=34 Score=13.33 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=11.1
Q ss_pred HHHHHHHHCCCCCEEEEEE
Q ss_conf 9999996057631489999
Q gi|254780695|r 138 EIARTIQSISGIVAARVHI 156 (563)
Q Consensus 138 eL~rtI~~~~~V~~ArV~l 156 (563)
-+++.|..++||++++|.+
T Consensus 20 ~v~~~l~~~~GV~~v~v~~ 38 (71)
T 2aj0_A 20 KFERNVKEIEGVTEAIVNF 38 (71)
T ss_dssp HHHHHHHHSTTEEEEEECC
T ss_pred HHHHHHCCCCCCEEEEEEC
T ss_conf 9999872379944999989
No 52
>>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (A:449-527)
Probab=25.12 E-value=36 Score=13.17 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999984699824503899989999999999977992
Q gi|254780695|r 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 (563)
Q Consensus 38 ~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~ 73 (563)
|++||++.++ +++..|..++...|.+.|++
T Consensus 11 fiI~yLst~~------~ls~~e~~~~e~aL~~~g~D 40 (79)
T 1mqs_A 11 FIVLYLTSTT------GLPKDFVQNVENYFKENDYD 40 (79)
T ss_dssp HHHHHHHCSS------CCCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHCCC------CCCHHHHHHHHHHHHHCCCC
T ss_conf 9999986278------98668999999999864998
No 53
>>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:120-235)
Probab=25.11 E-value=31 Score=13.57 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=43.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCEEECCCCCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 99998640698788999999999999999999984699-----82450389998999999999997799299918
Q gi|254780695|r 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-----HYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 (563)
Q Consensus 9 ~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p-----~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~ 78 (563)
+..+....+...++++++++..+.+-+...+...-.+. .-.+|...+++.-...+...|.+.||.+.++.
T Consensus 15 ~~~~~~~~~~~~~~v~IiGgG~~GiE~A~~l~~~g~~v~li~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~ 89 (116)
T 2gqw_A 15 DARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER 89 (116)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred HCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCC
T ss_conf 000001112567630897241111111222122103577642555001224657789999998652110341142
No 54
>>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, metal transport; NMR {Helicobacter pylori 26695} (A:)
Probab=24.69 E-value=36 Score=13.12 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHH-HHHH
Q ss_conf 999999996057631489999833666555555587159997068778988999-9999
Q gi|254780695|r 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRH 193 (563)
Q Consensus 136 egeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~-~I~~ 193 (563)
...+++.|..++||.+++|.+. +-.|.++..+..+++++. +|.+
T Consensus 16 ~~~Ie~~l~~~~gV~~v~v~l~--------------~~~v~V~~~~~~~~~~i~~~I~~ 60 (66)
T 1yg0_A 16 VDKIEKFVGEIEGVSFIDVSVE--------------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp HHHHHHHHTTSSSEEEEEEETT--------------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECC--------------CCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999971899469999888--------------99999999999999999999998
No 55
>>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} (A:)
Probab=24.41 E-value=37 Score=13.08 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCHHHHH
Q ss_conf 9999999605763148999983366655555558715999706877-8988999
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAE 189 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~-l~~~qv~ 189 (563)
.-+++.|..++||.+++|.+. +-.+.++..++ .+++++.
T Consensus 18 ~~ie~~l~~~~GV~~v~v~~~--------------~~~~~v~~d~~~~~~~~i~ 57 (69)
T 2qif_A 18 KAVETSVGELDGVSAVHVNLE--------------AGKVDVSFDADKVSVKDIA 57 (69)
T ss_dssp HHHHHHHHTSTTEEEEEEETT--------------TTEEEEEECTTTCCHHHHH
T ss_pred HHHHHHHHCCCCCEEEEEECC--------------CCEEEEEECCCCCCHHHHH
T ss_conf 999999971999479999887--------------9999999899989999999
No 56
>>1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase; HET: FAD; 2.30A {Trypanosoma cruzi} (A:177-284)
Probab=24.37 E-value=37 Score=13.08 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-------CCCCCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 78899999999999999999998469982450-------389998999999999997799299918
Q gi|254780695|r 20 TRILILASVILVPIMLFMAARFFVNSPHYDNL-------YVKLEVSDVNRISVALSEANIDFRISD 78 (563)
Q Consensus 20 ~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L-------~~~l~~~d~~~i~~~L~~~gI~y~~~~ 78 (563)
.+++++++...+.+=+...+.-+.....-+.| +..+++.-...+...|.+.||...++.
T Consensus 11 ~~~vvViGgG~~G~E~A~~l~~~~~~g~~vtl~e~~~~i~~~~~~~~~~~~~~~l~~~gv~i~~~~ 76 (108)
T 1aog_A 11 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE 76 (108)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred CHHHEEEECCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHCHHHHHCCCCCCCCCHHHHEEEECCCC
T ss_conf 633235522520000322311013334200000002220302331343331110000000331366
No 57
>>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} (A:)
Probab=24.01 E-value=37 Score=13.03 Aligned_cols=20 Identities=10% Similarity=0.406 Sum_probs=13.7
Q ss_pred HHHHHHHHHCCCCCEEEEEE
Q ss_conf 99999996057631489999
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHI 156 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l 156 (563)
.-+++.|..++||.+++|.+
T Consensus 19 ~~Ie~~l~~~~GV~~v~v~~ 38 (73)
T 1mwy_A 19 RKVENAVRQLAGVNQVQVLF 38 (73)
T ss_dssp HHHHHHHHTSSSEEEEEEET
T ss_pred HHHHHHHHCCCCCEEEEEEC
T ss_conf 99999986599947999989
No 58
>>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,; 1.75A {Escherichia coli} (A:38-121)
Probab=23.33 E-value=11 Score=16.67 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=35.7
Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHH
Q ss_conf 038999899999999999779929991899779951899999
Q gi|254780695|r 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 (563)
Q Consensus 51 L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~ 92 (563)
|=.+.+..|-..+...|+...|.++..+++..|++...++..
T Consensus 11 l~~~id~~d~~~i~~~l~~~~i~~~~~~~~~~v~lng~dvt~ 52 (84)
T 1cke_A 11 LHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSG 52 (84)
T ss_dssp HHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTEECHH
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCH
T ss_conf 981997046676654430233100123544267632444421
No 59
>>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma cruzi} (A:203-285)
Probab=23.19 E-value=39 Score=12.93 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 346989999999986431256611387689985035665
Q gi|254780695|r 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 (563)
Q Consensus 378 ~~~~~eel~~I~~lV~~AiG~d~~RGD~VtV~~~~F~~~ 416 (563)
.+++.+...++..-+...+|||.+|| .+-++.=||...
T Consensus 3 g~~~~~~Q~~~~~~i~~~~G~D~~~g-rld~s~HPFt~~ 40 (83)
T 3dwc_A 3 GPFPVSKQEALCRFFMDVWKFDFDGG-RLDVSAHPFCGN 40 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCTTSE-EEEECSSCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCC
T ss_conf 79999999999999999819886555-336676751168
No 60
>>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* (A:1-43,A:164-239,A:321-474)
Probab=22.89 E-value=19 Score=14.94 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=7.0
Q ss_pred CCEEEEECCCCE
Q ss_conf 526998289835
Q gi|254780695|r 205 GDVTVLDSTGKL 216 (563)
Q Consensus 205 e~VtVvD~~G~~ 216 (563)
-+|||++..-.+
T Consensus 32 ~~~~~~~~~~~~ 43 (273)
T 2aqj_A 32 ANITLIESAAIP 43 (273)
T ss_dssp CEEEEEECSSSC
T ss_pred CEEEEEECCCCC
T ss_conf 979999689999
No 61
>>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} (A:1-88)
Probab=22.69 E-value=40 Score=12.87 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=13.9
Q ss_pred HCHHHHHHHHHHHHHH
Q ss_conf 6999899999999863
Q gi|254780695|r 537 INEERFAKILRKWARS 552 (563)
Q Consensus 537 e~Pe~vA~vLR~WL~e 552 (563)
.+|-.+|.+||.||++
T Consensus 68 ~~~~~va~vLK~flr~ 83 (88)
T 2ovj_A 68 DDIHAICSLLKDFLRN 83 (88)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 4578999999999853
No 62
>>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2- fluoro-P-hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A* (A:1-47)
Probab=22.31 E-value=40 Score=12.82 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH---HHCCCCCCEEEE
Q ss_conf 997068778988999999999865---401883526998
Q gi|254780695|r 175 VMIRAINPSVYKSAEAIRHLVAAA---VPNLDMGDVTVL 210 (563)
Q Consensus 175 V~l~~~~~l~~~qv~~I~~lVa~s---V~gL~~e~VtVv 210 (563)
|.+++..|+|.+|-+.+..-+.-+ +-|..++.|.|+
T Consensus 3 i~V~~~~Grt~eQK~~l~~~iT~a~~~~lg~p~e~V~Vi 41 (47)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVF 41 (47)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999974899999999999999999999849490519999
No 63
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:287-385,A:549-724)
Probab=22.19 E-value=41 Score=12.80 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=13.9
Q ss_pred CEEECCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 245038999899999999999779929991
Q gi|254780695|r 48 YDNLYVKLEVSDVNRISVALSEANIDFRIS 77 (563)
Q Consensus 48 y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~ 77 (563)
..+||..-. .+..+...|...||||++.
T Consensus 68 iAIL~r~~~--~~~~~~~~l~~~gIP~~~~ 95 (275)
T 1pjr_A 68 FAVLYRTNA--QSRVMEEMLLKANIPYQIV 95 (275)
T ss_dssp EEEEESSGG--GHHHHHHHHHHTTCCEEEE
T ss_pred CEEEECCHH--HHHHHHHHHHHCCCCEEEE
T ss_conf 149951547--6999999999879989996
No 64
>>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} (A:1-137)
Probab=22.06 E-value=41 Score=12.79 Aligned_cols=18 Identities=6% Similarity=0.158 Sum_probs=15.1
Q ss_pred HHHCHHHHHHHHHHHHHH
Q ss_conf 886999899999999863
Q gi|254780695|r 535 IEINEERFAKILRKWARS 552 (563)
Q Consensus 535 v~e~Pe~vA~vLR~WL~e 552 (563)
-..+|-.+|.+||.||+|
T Consensus 117 ~~~d~~~va~lLK~flre 134 (137)
T 3fk2_A 117 KDFTVNTVAGAMKSFFSE 134 (137)
T ss_dssp GTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 458799999999998610
No 65
>>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} (X:)
Probab=21.64 E-value=42 Score=12.73 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCHHHH-HHHHH
Q ss_conf 9999999605763148999983366655555558715999706877-898899-99999
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSA-EAIRH 193 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~-l~~~qv-~~I~~ 193 (563)
.-+++.+..++||++++|.+. +-.|.++..++ .+++++ ++|..
T Consensus 18 ~~Ie~~l~~~~GV~~~~v~~~--------------~~~v~V~~~~~~~~~~~i~~ai~~ 62 (74)
T 3dxs_X 18 NSVEAALMNVNGVFKASVALL--------------QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp HHHHHHHHTSTTEEEEEEEGG--------------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEEECC--------------CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999972999579999844--------------999999999998999999999997
No 66
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:284-381,A:547-680)
Probab=21.12 E-value=43 Score=12.66 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=12.4
Q ss_pred CEEECCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 245038999899999999999779929991
Q gi|254780695|r 48 YDNLYVKLEVSDVNRISVALSEANIDFRIS 77 (563)
Q Consensus 48 y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~ 77 (563)
..+||..- .++..+...|...||||++.
T Consensus 67 IAIL~r~~--~~~~~l~~~L~~~gIP~~~~ 94 (232)
T 2is6_A 67 CAILYRSN--AQSRVLEEALLQASMPYRIY 94 (232)
T ss_dssp EEEEESSG--GGHHHHHHHHHHTTCCEEEC
T ss_pred CEEEECCC--HHHHHHHHHHHHCCCCEEEE
T ss_conf 24664152--41899999999779988985
No 67
>>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} (A:476-580)
Probab=20.87 E-value=43 Score=12.63 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCC
Q ss_conf 999999960576314899998336665555555871599970687789889999999998654018-8352699828983
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL-DMGDVTVLDSTGK 215 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~sV~gL-~~e~VtVvD~~G~ 215 (563)
+|+++.|.++++|..|-|.- .|.... .....+-|++......+......|...++..++.. -|..+.++|.--.
T Consensus 13 ~eIE~~i~~~~~v~~~~v~~-~~~~~~----~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~~~v~~lP~ 87 (105)
T 3etc_A 13 FEVESALIQHPAVLECAITG-VPDPVR----GQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPK 87 (105)
T ss_dssp HHHHHHHTTSTTEEEEEEEE-EEETTT----EEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---
T ss_pred HHHHHHHHCCCCCCEEEEEE-EECCCC----CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 99999998099823799998-886899----8189999998999997878999999999856888758619999798787
Q ss_pred EE
Q ss_conf 50
Q gi|254780695|r 216 LL 217 (563)
Q Consensus 216 ~L 217 (563)
.-
T Consensus 88 t~ 89 (105)
T 3etc_A 88 TI 89 (105)
T ss_dssp --
T ss_pred CC
T ss_conf 98
No 68
>>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A (A:634-762)
Probab=20.51 E-value=44 Score=12.58 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 98999999998637863
Q gi|254780695|r 540 ERFAKILRKWARSEIED 556 (563)
Q Consensus 540 e~vA~vLR~WL~ee~~~ 556 (563)
-+|.++||.||..-+.|
T Consensus 54 ~RV~nvlk~Wie~~~~D 70 (129)
T 3ksy_A 54 LRVLNVCRHWVEHHFYD 70 (129)
T ss_dssp HHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 79999999999838644
No 69
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:1-66,A:320-340)
Probab=20.44 E-value=44 Score=12.57 Aligned_cols=37 Identities=8% Similarity=-0.024 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECHH
Q ss_conf 3899989999999999977992999189977995189
Q gi|254780695|r 52 YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88 (563)
Q Consensus 52 ~~~l~~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~ 88 (563)
+.--+.+|..++...++.+++|+.+-.+|+-++++++
T Consensus 19 i~p~s~eeL~~ll~~~~~~~~p~~ILG~GSNlLf~d~ 55 (87)
T 1uxy_A 19 VCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLED 55 (87)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECSC
T ss_pred EEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECC
T ss_conf 9979999999999988876998899928488999479
No 70
>>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} (A:235-317)
Probab=20.24 E-value=44 Score=12.54 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=13.4
Q ss_pred HHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 9998869998999999998637
Q gi|254780695|r 532 LHMIEINEERFAKILRKWARSE 553 (563)
Q Consensus 532 ~~lv~e~Pe~vA~vLR~WL~ee 553 (563)
..+..-.|.+.++|||.||...
T Consensus 11 ~~l~~ls~~r~~~lLR~WL~~~ 32 (83)
T 1ni5_A 11 VPXLAXSDARRAAIIRRWLAGQ 32 (83)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHHHC
T ss_conf 6522257999999999999976
No 71
>>1cpz_A Protein (COPZ); copper chaperone, metal transport; NMR {Enterococcus hirae} (A:)
Probab=20.17 E-value=45 Score=12.53 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCHHHH
Q ss_conf 9999999605763148999983366655555558715999706877-898899
Q gi|254780695|r 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSA 188 (563)
Q Consensus 137 geL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~-l~~~qv 188 (563)
..+++.|..++||.+++|.+. +-.+.++..++ .+.+++
T Consensus 16 ~~Ie~~l~~~~GV~~v~v~~~--------------~~~~~v~~d~~~~~~~~i 54 (68)
T 1cpz_A 16 ARIEEAVGRISGVKKVKVQLK--------------KEKAVVKFDEANVQATEI 54 (68)
T ss_dssp HHHHHHHHTSTTEEEEEEETT--------------TTEEEEEECTTTCCHHHH
T ss_pred HHHHHHHHCCCCCEEEEEECC--------------CCEEEEEECCCCCCHHHH
T ss_conf 999988756999379999867--------------999999989998999999
Done!