HHsearch results for GI: 254780695 and protein with PDBid: 1yj7_A

>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=100.00  E-value=4.5e-44  Score=310.82  Aligned_cols=160  Identities=18%  Similarity=0.276  Sum_probs=146.0

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEECCC---CCEEEECHHHHHHHHHHHHHCCCCCCCCCCHHH-HHCCCCCCCCCH
Q ss_conf             4503899989999999999977992999189---977995189999999999976998877663256-530588842599
Q gi|254780695|r   49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE-LFDKVNSFGLTS  124 (563)
Q Consensus        49 ~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~---g~~I~Vp~~~~~~~r~~La~~glp~~~~~~g~e-l~d~~~~~g~T~  124 (563)
                      ++||+||+++|+++|++.|+++||+|++..+   |.+|+||+++++++|+.||.+|||+.+. .||+ +|++ ++||+|+
T Consensus         3 ~~Ly~~L~~~da~~i~~~L~~~gI~y~~~~~~~gg~~I~V~~~~~~~a~~~La~~glP~~~~-~~~~~lf~~-~~~~~T~   80 (171)
T 1yj7_A            3 EQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKF-ADIEVIFPP-SQLVASP   80 (171)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHTTCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCSCCCC-CCHHHHCC-------CH
T ss_pred             CHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHCCCCCCCC-CCHHHHCCC-CCCCCCH
T ss_conf             61106999999999999999879985975179984799976888999999999728998888-889998158-9876799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999960576314899998336665555555871599970687789-8899999999986540188
Q gi|254780695|r  125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLD  203 (563)
Q Consensus       125 ~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~-~~qv~~I~~lVa~sV~gL~  203 (563)
                      |+++++|+|||||||+|||++|++|++|||||++|++     ++.++||||+|+++++.. ..||.+|++|||+|||||+
T Consensus        81 ~~~~~~~~~ale~eL~~tI~~i~gV~~ArV~l~~P~~-----~~~~~tASV~l~~~~~~~l~~qv~~I~~LVa~sV~gL~  155 (171)
T 1yj7_A           81 SQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLK  155 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEC------------CEEEEEEEECTTCCCGGGHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-----CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999999999999816570157999957988-----88985179999718998769999999999997269989


Q ss_pred             CCCEEEEECCCC
Q ss_conf             352699828983
Q gi|254780695|r  204 MGDVTVLDSTGK  215 (563)
Q Consensus       204 ~e~VtVvD~~G~  215 (563)
                      ++||||+|+.+.
T Consensus       156 ~e~VtVv~q~~~  167 (171)
T 1yj7_A          156 LENISVVIKSSS  167 (171)
T ss_dssp             GGGEEEEEEECC
T ss_pred             CCCEEEEECCCC
T ss_conf             113699974687