HHsearch results for GI: 254780695 and protein with PDBid: 1yj7_A
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=100.00 E-value=4.5e-44 Score=310.82 Aligned_cols=160 Identities=18% Similarity=0.276 Sum_probs=146.0
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEECCC---CCEEEECHHHHHHHHHHHHHCCCCCCCCCCHHH-HHCCCCCCCCCH
Q ss_conf 4503899989999999999977992999189---977995189999999999976998877663256-530588842599
Q gi|254780695|r 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE-LFDKVNSFGLTS 124 (563)
Q Consensus 49 ~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~---g~~I~Vp~~~~~~~r~~La~~glp~~~~~~g~e-l~d~~~~~g~T~ 124 (563)
++||+||+++|+++|++.|+++||+|++..+ |.+|+||+++++++|+.||.+|||+.+. .||+ +|++ ++||+|+
T Consensus 3 ~~Ly~~L~~~da~~i~~~L~~~gI~y~~~~~~~gg~~I~V~~~~~~~a~~~La~~glP~~~~-~~~~~lf~~-~~~~~T~ 80 (171)
T 1yj7_A 3 EQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKF-ADIEVIFPP-SQLVASP 80 (171)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCSCCCC-CCHHHHCC-------CH
T ss_pred CHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHCCCCCCCC-CCHHHHCCC-CCCCCCH
T ss_conf 61106999999999999999879985975179984799976888999999999728998888-889998158-9876799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999960576314899998336665555555871599970687789-8899999999986540188
Q gi|254780695|r 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLD 203 (563)
Q Consensus 125 ~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~-~~qv~~I~~lVa~sV~gL~ 203 (563)
|+++++|+|||||||+|||++|++|++|||||++|++ ++.++||||+|+++++.. ..||.+|++|||+|||||+
T Consensus 81 ~~~~~~~~~ale~eL~~tI~~i~gV~~ArV~l~~P~~-----~~~~~tASV~l~~~~~~~l~~qv~~I~~LVa~sV~gL~ 155 (171)
T 1yj7_A 81 SQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLK 155 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEC------------CEEEEEEEECTTCCCGGGHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-----CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999999816570157999957988-----88985179999718998769999999999997269989
Q ss_pred CCCEEEEECCCC
Q ss_conf 352699828983
Q gi|254780695|r 204 MGDVTVLDSTGK 215 (563)
Q Consensus 204 ~e~VtVvD~~G~ 215 (563)
++||||+|+.+.
T Consensus 156 ~e~VtVv~q~~~ 167 (171)
T 1yj7_A 156 LENISVVIKSSS 167 (171)
T ss_dssp GGGEEEEEEECC
T ss_pred CCCEEEEECCCC
T ss_conf 113699974687